Query 028846
Match_columns 203
No_of_seqs 153 out of 990
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 3.3E-63 7.2E-68 380.5 17.9 198 4-202 1-216 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 1.4E-30 3.1E-35 204.2 19.6 173 5-178 1-201 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 1.6E-27 3.5E-32 180.2 13.7 138 29-167 41-193 (198)
4 PF00957 Synaptobrevin: Synapt 99.9 2.5E-27 5.5E-32 165.8 11.5 87 111-197 3-89 (89)
5 KOG0860 Synaptobrevin/VAMP-lik 99.9 5E-27 1.1E-31 167.3 11.0 86 110-195 28-113 (116)
6 COG5143 SNC1 Synaptobrevin/VAM 99.8 1.5E-19 3.2E-24 140.2 13.2 143 30-172 32-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 1.9E-19 4.2E-24 124.2 11.4 80 31-111 1-81 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.6 0.0004 8.6E-09 54.5 7.8 78 110-187 93-170 (190)
9 PF00957 Synaptobrevin: Synapt 96.9 0.027 5.8E-07 38.9 10.2 76 112-191 11-86 (89)
10 PF03908 Sec20: Sec20; InterP 96.5 0.085 1.8E-06 36.7 10.9 75 115-192 5-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.0 0.059 1.3E-06 44.9 9.1 44 112-155 181-224 (269)
12 COG5074 t-SNARE complex subuni 95.0 0.22 4.7E-06 40.5 8.6 42 112-153 186-227 (280)
13 KOG0810 SNARE protein Syntaxin 94.8 0.21 4.5E-06 42.4 8.6 39 112-150 207-245 (297)
14 KOG0781 Signal recognition par 92.9 0.46 1E-05 42.7 7.3 86 7-94 4-95 (587)
15 PF03908 Sec20: Sec20; InterP 92.9 2.2 4.8E-05 29.5 10.6 38 113-150 10-47 (92)
16 PF09753 Use1: Membrane fusion 92.1 1.7 3.8E-05 35.7 9.5 39 149-189 202-243 (251)
17 PF01217 Clat_adaptor_s: Clath 91.9 4 8.6E-05 30.3 13.9 126 5-137 1-134 (141)
18 PF04086 SRP-alpha_N: Signal r 91.6 0.64 1.4E-05 38.8 6.6 64 29-94 5-70 (279)
19 PF10779 XhlA: Haemolysin XhlA 89.1 4.7 0.0001 26.5 9.0 52 137-191 18-69 (71)
20 KOG0860 Synaptobrevin/VAMP-lik 88.7 7.4 0.00016 28.3 10.0 28 130-160 58-85 (116)
21 COG5325 t-SNARE complex subuni 87.9 5.9 0.00013 33.1 9.1 50 112-161 196-249 (283)
22 PTZ00478 Sec superfamily; Prov 87.2 2.3 5.1E-05 28.8 5.3 58 134-191 9-66 (81)
23 PRK09400 secE preprotein trans 85.1 3.8 8.3E-05 26.3 5.3 51 143-193 5-55 (61)
24 COG5074 t-SNARE complex subuni 84.3 5.6 0.00012 32.5 7.1 11 76-86 104-114 (280)
25 KOG1983 Tomosyn and related SN 83.6 1 2.2E-05 44.4 3.2 43 128-170 944-986 (993)
26 KOG0938 Adaptor complexes medi 82.9 18 0.00038 31.4 9.8 90 1-94 1-93 (446)
27 KOG3385 V-SNARE [Intracellular 79.8 10 0.00022 27.5 6.4 74 112-190 37-114 (118)
28 PF03904 DUF334: Domain of unk 79.8 31 0.00068 28.0 9.9 19 181-199 156-174 (230)
29 KOG0810 SNARE protein Syntaxin 79.8 14 0.00031 31.3 8.4 9 153-161 244-252 (297)
30 PF09426 Nyv1_N: Vacuolar R-SN 79.5 5 0.00011 29.8 4.8 38 50-87 70-110 (141)
31 PF01601 Corona_S2: Coronaviru 79.4 0.66 1.4E-05 42.6 0.3 11 114-124 511-521 (610)
32 PF05478 Prominin: Prominin; 78.0 22 0.00049 34.4 10.1 8 172-179 410-417 (806)
33 KOG0812 SNARE protein SED5/Syn 77.7 31 0.00066 29.2 9.4 35 112-146 228-262 (311)
34 PF04099 Sybindin: Sybindin-li 77.7 22 0.00049 26.6 8.1 58 33-91 46-113 (142)
35 KOG3202 SNARE protein TLG1/Syn 77.3 27 0.00058 28.7 9.0 19 116-134 142-160 (235)
36 PF12606 RELT: Tumour necrosis 74.8 2 4.2E-05 26.5 1.4 12 191-202 16-32 (50)
37 PF04799 Fzo_mitofusin: fzo-li 73.3 23 0.0005 27.5 7.3 49 112-160 110-158 (171)
38 PF13800 Sigma_reg_N: Sigma fa 72.9 8 0.00017 26.8 4.4 13 166-178 6-18 (96)
39 PF06789 UPF0258: Uncharacteri 72.8 2.1 4.5E-05 32.5 1.4 31 163-196 125-155 (159)
40 PF06837 Fijivirus_P9-2: Fijiv 72.6 5.9 0.00013 31.2 3.8 38 116-153 21-60 (214)
41 PF13800 Sigma_reg_N: Sigma fa 71.4 9.1 0.0002 26.5 4.3 26 161-186 4-29 (96)
42 TIGR00327 secE_euk_arch protei 69.7 15 0.00033 23.5 4.7 44 150-193 8-51 (61)
43 PF07204 Orthoreo_P10: Orthore 67.8 3.2 6.9E-05 28.9 1.3 24 173-196 40-63 (98)
44 KOG0809 SNARE protein TLG2/Syn 67.7 22 0.00048 30.1 6.5 39 112-150 219-257 (305)
45 KOG3498 Preprotein translocase 66.2 22 0.00047 23.0 4.8 51 141-191 4-54 (67)
46 PF07798 DUF1640: Protein of u 66.1 60 0.0013 25.1 10.9 23 112-134 81-103 (177)
47 cd07912 Tweety_N N-terminal do 59.8 80 0.0017 28.2 8.9 18 114-131 126-143 (418)
48 KOG1666 V-SNARE [Intracellular 59.0 95 0.0021 25.1 10.6 18 112-129 129-146 (220)
49 PF04906 Tweety: Tweety; Inte 58.7 84 0.0018 27.9 8.9 14 114-127 106-119 (406)
50 PF05739 SNARE: SNARE domain; 58.0 43 0.00092 20.8 7.7 43 112-154 5-47 (63)
51 PF09753 Use1: Membrane fusion 58.0 97 0.0021 25.3 8.7 12 80-91 113-124 (251)
52 PF05659 RPW8: Arabidopsis bro 57.9 23 0.0005 26.8 4.6 20 156-175 79-98 (147)
53 PF04210 MtrG: Tetrahydrometha 57.9 51 0.0011 21.6 7.5 29 139-169 19-47 (70)
54 PF11337 DUF3139: Protein of u 55.5 14 0.00029 25.1 2.7 6 175-180 5-10 (85)
55 PF08006 DUF1700: Protein of u 55.0 81 0.0018 24.3 7.4 11 80-90 5-15 (181)
56 PF03302 VSP: Giardia variant- 54.9 8 0.00017 34.2 1.9 12 187-198 384-395 (397)
57 KOG1326 Membrane-associated pr 54.8 17 0.00037 35.7 4.1 27 164-190 1060-1086(1105)
58 PF06072 Herpes_US9: Alphaherp 53.6 55 0.0012 20.8 4.9 9 153-161 9-17 (60)
59 KOG2678 Predicted membrane pro 52.9 93 0.002 25.4 7.4 19 146-164 194-212 (244)
60 PRK10884 SH3 domain-containing 52.3 1.2E+02 0.0026 24.3 10.8 17 138-154 131-147 (206)
61 PF13124 DUF3963: Protein of u 52.1 33 0.00072 19.5 3.4 17 168-184 17-33 (40)
62 KOG3894 SNARE protein Syntaxin 50.2 1.6E+02 0.0034 25.3 8.7 15 132-146 253-267 (316)
63 KOG2678 Predicted membrane pro 49.3 85 0.0019 25.6 6.6 27 152-178 193-220 (244)
64 PRK13664 hypothetical protein; 47.8 36 0.00077 21.5 3.4 15 170-184 3-17 (62)
65 PF05478 Prominin: Prominin; 47.7 1.9E+02 0.0042 28.1 10.1 27 171-197 412-441 (806)
66 KOG0859 Synaptobrevin/VAMP-lik 47.5 73 0.0016 25.5 5.9 14 153-166 160-173 (217)
67 PF02439 Adeno_E3_CR2: Adenovi 46.1 33 0.0007 19.8 2.8 7 190-196 22-28 (38)
68 PF14575 EphA2_TM: Ephrin type 45.7 34 0.00073 22.7 3.4 19 179-197 6-24 (75)
69 cd00193 t_SNARE Soluble NSF (N 45.3 67 0.0014 19.2 5.9 43 112-154 7-49 (60)
70 KOG3287 Membrane trafficking p 44.8 1.7E+02 0.0037 23.8 7.7 56 126-181 150-210 (236)
71 KOG3208 SNARE protein GS28 [In 44.5 1.7E+02 0.0037 23.8 9.1 13 79-91 95-107 (231)
72 PF03164 Mon1: Trafficking pro 44.4 2.3E+02 0.005 25.2 9.8 87 7-93 13-103 (415)
73 COG5415 Predicted integral mem 43.8 1.2E+02 0.0027 24.5 6.7 20 138-157 14-33 (251)
74 PHA03240 envelope glycoprotein 43.7 25 0.00054 28.5 2.8 6 16-21 73-78 (258)
75 smart00397 t_SNARE Helical reg 43.6 75 0.0016 19.4 5.9 43 112-154 13-55 (66)
76 KOG4782 Predicted membrane pro 43.0 73 0.0016 22.2 4.7 36 149-184 28-67 (108)
77 PRK01026 tetrahydromethanopter 42.9 1E+02 0.0022 20.7 8.0 27 140-168 23-49 (77)
78 PF05393 Hum_adeno_E3A: Human 42.3 16 0.00035 25.1 1.4 9 188-196 46-54 (94)
79 PHA02844 putative transmembran 41.8 23 0.00049 23.6 2.0 9 177-185 52-60 (75)
80 PF06008 Laminin_I: Laminin Do 41.1 69 0.0015 26.4 5.3 41 112-152 193-233 (264)
81 COG5547 Small integral membran 40.2 40 0.00088 21.3 2.8 14 170-183 3-16 (62)
82 PF12751 Vac7: Vacuolar segreg 39.8 31 0.00067 30.4 3.1 21 166-186 294-314 (387)
83 KOG0811 SNARE protein PEP12/VA 39.6 2.3E+02 0.005 23.8 9.1 20 127-146 168-187 (269)
84 KOG2740 Clathrin-associated pr 39.5 1.1E+02 0.0023 26.9 6.2 44 51-94 53-96 (418)
85 PF12420 DUF3671: Protein of u 39.5 1.4E+02 0.003 21.2 5.9 18 169-186 40-57 (104)
86 PRK10573 type IV pilin biogene 39.3 2.6E+02 0.0056 24.3 9.1 18 1-18 1-19 (399)
87 TIGR01478 STEVOR variant surfa 39.2 30 0.00064 29.2 2.8 17 178-194 267-283 (295)
88 PF10392 COG5: Golgi transport 39.2 1.5E+02 0.0033 21.6 7.4 46 123-168 49-94 (132)
89 PF00482 T2SF: Type II secreti 39.2 67 0.0015 21.9 4.4 12 149-160 78-89 (124)
90 PF15339 Afaf: Acrosome format 38.9 47 0.001 25.9 3.6 21 177-197 131-152 (200)
91 TIGR01149 mtrG N5-methyltetrah 38.8 1.1E+02 0.0024 20.0 7.6 27 140-168 20-46 (70)
92 PF11166 DUF2951: Protein of u 38.3 1.4E+02 0.003 20.9 10.2 17 117-133 34-50 (98)
93 PTZ00370 STEVOR; Provisional 37.8 32 0.0007 29.0 2.8 17 178-194 263-279 (296)
94 COG1969 HyaC Ni,Fe-hydrogenase 37.4 30 0.00064 27.8 2.4 37 163-199 96-150 (227)
95 KOG1690 emp24/gp25L/p24 family 37.4 1.1E+02 0.0024 24.5 5.5 17 156-172 170-187 (215)
96 PF01102 Glycophorin_A: Glycop 36.3 46 0.001 24.4 3.1 13 177-189 67-79 (122)
97 PHA03164 hypothetical protein; 36.3 52 0.0011 22.0 3.0 19 175-193 59-77 (88)
98 COG5185 HEC1 Protein involved 36.2 2.9E+02 0.0062 25.3 8.5 43 127-169 283-325 (622)
99 PF12352 V-SNARE_C: Snare regi 36.1 1.1E+02 0.0024 19.2 7.6 45 112-156 9-53 (66)
100 PF00558 Vpu: Vpu protein; In 35.7 46 0.00099 22.6 2.8 19 177-195 7-25 (81)
101 PTZ00382 Variant-specific surf 35.2 22 0.00047 24.9 1.2 12 187-198 83-94 (96)
102 PF00517 GP41: Retroviral enve 34.6 1.3E+02 0.0029 23.9 5.8 10 116-125 106-115 (204)
103 COG3524 KpsE Capsule polysacch 34.0 72 0.0016 27.4 4.2 18 112-129 231-248 (372)
104 PF14004 DUF4227: Protein of u 33.6 70 0.0015 21.1 3.3 24 168-191 1-24 (71)
105 KOG4827 Uncharacterized conser 33.4 27 0.00058 27.9 1.5 21 167-187 238-258 (279)
106 PF14992 TMCO5: TMCO5 family 32.6 3.1E+02 0.0066 23.2 10.9 13 165-177 209-221 (280)
107 PF13908 Shisa: Wnt and FGF in 32.5 22 0.00047 27.6 0.9 16 181-196 82-97 (179)
108 PF07172 GRP: Glycine rich pro 31.7 54 0.0012 22.9 2.7 17 175-191 4-20 (95)
109 COG4327 Predicted membrane pro 31.7 99 0.0021 21.6 3.9 30 162-191 6-35 (101)
110 PF06695 Sm_multidrug_ex: Puta 31.6 1.8E+02 0.0038 21.1 5.6 14 167-180 65-78 (121)
111 PF00664 ABC_membrane: ABC tra 31.6 2.4E+02 0.0052 21.6 10.9 23 114-136 166-188 (275)
112 PF07296 TraP: TraP protein; 31.5 2.3E+02 0.0051 22.5 6.4 44 148-192 6-49 (202)
113 PF13980 UPF0370: Uncharacteri 31.4 86 0.0019 19.9 3.3 11 170-180 3-13 (63)
114 PF11675 DUF3271: Protein of u 30.8 1.9E+02 0.0041 23.8 6.0 55 3-60 28-82 (249)
115 PF02038 ATP1G1_PLM_MAT8: ATP1 30.5 1.2E+02 0.0025 18.7 3.7 12 171-182 11-22 (50)
116 PRK10381 LPS O-antigen length 30.4 80 0.0017 27.7 4.2 18 168-185 34-51 (377)
117 PF13706 PepSY_TM_3: PepSY-ass 30.1 92 0.002 17.5 3.1 16 169-184 3-18 (37)
118 PRK14125 cell division suppres 30.0 79 0.0017 22.3 3.4 15 168-182 2-16 (103)
119 PF14914 LRRC37AB_C: LRRC37A/B 30.0 50 0.0011 25.1 2.4 11 79-89 29-39 (154)
120 PRK15348 type III secretion sy 29.7 1E+02 0.0022 25.6 4.4 27 162-188 209-235 (249)
121 PF14898 DUF4491: Domain of un 29.5 38 0.00082 23.6 1.6 27 175-201 35-68 (94)
122 KOG2635 Medium subunit of clat 29.4 4.3E+02 0.0094 24.0 10.8 33 45-77 46-78 (512)
123 PF11166 DUF2951: Protein of u 29.1 2E+02 0.0044 20.1 9.0 10 172-181 70-79 (98)
124 PF13937 DUF4212: Domain of un 28.6 1.6E+02 0.0034 20.0 4.5 21 166-186 3-23 (81)
125 KOG1666 V-SNARE [Intracellular 28.4 3.2E+02 0.007 22.1 10.3 19 167-185 191-209 (220)
126 COG4499 Predicted membrane pro 28.1 85 0.0018 27.8 3.8 62 30-91 39-104 (434)
127 PF08999 SP_C-Propep: Surfacta 28.1 1.1E+02 0.0023 20.9 3.5 19 173-191 32-50 (93)
128 PLN03223 Polycystin cation cha 27.7 1.2E+02 0.0026 31.4 5.2 44 110-153 1580-1623(1634)
129 PF05399 EVI2A: Ectropic viral 27.4 52 0.0011 26.5 2.3 6 156-161 114-119 (227)
130 PF13172 PepSY_TM_1: PepSY-ass 27.3 1.1E+02 0.0025 16.6 3.8 16 167-182 2-17 (34)
131 PF11026 DUF2721: Protein of u 27.2 2.5E+02 0.0055 20.5 8.2 22 159-180 49-70 (130)
132 PF10031 DUF2273: Small integr 26.4 1.1E+02 0.0024 18.7 3.1 11 169-179 2-12 (51)
133 PF08372 PRT_C: Plant phosphor 26.3 3E+02 0.0065 21.1 6.3 13 162-174 82-94 (156)
134 PF06143 Baculo_11_kDa: Baculo 26.2 1.5E+02 0.0031 20.3 4.0 13 167-179 29-41 (84)
135 PF04888 SseC: Secretion syste 26.2 3.9E+02 0.0084 22.3 8.2 18 163-180 50-67 (306)
136 KOG3251 Golgi SNAP receptor co 26.2 3.5E+02 0.0076 21.9 10.5 14 175-188 191-204 (213)
137 PF06789 UPF0258: Uncharacteri 25.8 40 0.00087 25.7 1.3 22 170-191 126-147 (159)
138 PRK10299 PhoPQ regulatory prot 25.8 47 0.001 20.0 1.3 25 172-196 2-28 (47)
139 PRK15471 chain length determin 25.8 1.1E+02 0.0023 26.4 4.1 18 167-184 24-41 (325)
140 PF07352 Phage_Mu_Gam: Bacteri 25.5 2.8E+02 0.0061 20.6 6.0 51 110-160 9-60 (149)
141 PRK12430 putative bifunctional 25.3 1.2E+02 0.0027 26.6 4.3 36 144-179 106-141 (379)
142 cd01617 DCX Ubiquitin-like dom 25.3 1.3E+02 0.0028 19.9 3.7 49 25-73 25-78 (80)
143 PF13044 DUF3904: Protein of u 24.8 77 0.0017 26.4 2.9 35 162-196 400-435 (436)
144 PF10039 DUF2275: Predicted in 24.8 1E+02 0.0023 25.0 3.6 23 163-185 23-45 (218)
145 KOG3658 Tumor necrosis factor- 24.3 95 0.0021 29.5 3.6 28 169-196 677-704 (764)
146 PF05545 FixQ: Cbb3-type cytoc 24.3 1.7E+02 0.0036 17.4 4.0 18 175-192 11-28 (49)
147 PF03670 UPF0184: Uncharacteri 24.0 1.5E+02 0.0033 20.2 3.8 29 141-169 42-70 (83)
148 PF11190 DUF2976: Protein of u 24.0 1E+02 0.0022 21.2 3.0 25 167-193 56-80 (87)
149 PF06422 PDR_CDR: CDR ABC tran 23.9 98 0.0021 21.7 3.0 31 156-186 34-64 (103)
150 KOG4433 Tweety transmembrane/c 23.9 4.7E+02 0.01 24.0 7.7 24 113-136 129-152 (526)
151 COG2443 Sss1 Preprotein transl 23.8 2.1E+02 0.0046 18.5 5.9 35 158-192 21-55 (65)
152 PF08113 CoxIIa: Cytochrome c 23.5 1.5E+02 0.0032 16.6 3.1 12 183-194 14-25 (34)
153 PF06103 DUF948: Bacterial pro 23.5 2.4E+02 0.0051 18.9 6.5 7 116-122 38-44 (90)
154 PRK10884 SH3 domain-containing 22.7 4E+02 0.0087 21.3 10.3 7 177-183 174-180 (206)
155 KOG3065 SNAP-25 (synaptosome-a 22.5 2.9E+02 0.0064 23.2 6.0 45 112-156 219-263 (273)
156 TIGR02120 GspF general secreti 22.4 5.2E+02 0.011 22.4 8.0 9 135-143 310-318 (399)
157 PF00306 ATP-synt_ab_C: ATP sy 22.0 2E+02 0.0044 20.2 4.4 40 128-167 4-45 (113)
158 PTZ00032 60S ribosomal protein 22.0 1.8E+02 0.0038 23.4 4.3 13 44-56 182-194 (211)
159 PHA02947 S-S bond formation pa 21.6 85 0.0018 25.3 2.5 15 28-42 11-25 (215)
160 PRK13865 type IV secretion sys 21.5 3.9E+02 0.0084 21.7 6.4 7 154-160 21-27 (229)
161 PF04799 Fzo_mitofusin: fzo-li 21.2 4E+02 0.0087 20.7 6.4 33 127-159 132-164 (171)
162 PHA02690 hypothetical protein; 21.1 2.8E+02 0.006 18.8 7.5 32 161-192 33-64 (90)
163 PRK09697 protein secretion pro 21.0 82 0.0018 22.8 2.0 28 167-196 17-44 (139)
164 PF05624 LSR: Lipolysis stimul 20.9 38 0.00081 20.4 0.3 14 178-191 8-21 (49)
165 PF15106 TMEM156: TMEM156 prot 20.6 61 0.0013 26.1 1.5 26 167-192 169-194 (226)
166 COG3771 Predicted membrane pro 20.6 74 0.0016 21.9 1.7 15 185-199 49-63 (97)
167 PHA01811 hypothetical protein 20.1 1.3E+02 0.0028 19.4 2.6 18 44-61 5-22 (78)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-63 Score=380.52 Aligned_cols=198 Identities=71% Similarity=1.106 Sum_probs=191.2
Q ss_pred cceEEEEEEeCCeEEEeecCCCCCHHHHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 028846 4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (203)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 82 (203)
|+|+|++||||++|||||++.+|||..++.++|+|+|++ ++|++|.+|+|+|||+.+||++|+|++|++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 579999999999999999999999999999999999997 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCcchHHhh-----------------HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHH
Q 028846 83 ERVKDEFVSKYGGGKAATAPANGLNKEFG-----------------KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 145 (203)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~l~~~f~-----------------kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~ 145 (203)
++|++.|.++|+ ....++.+|++++||+ +|++++.|++|++++|.||||++++|||+||.|+
T Consensus 81 e~Ik~~F~k~YG-~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLV 159 (217)
T KOG0859|consen 81 ERIKEDFKKRYG-GGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLV 159 (217)
T ss_pred HHHHHHHHHHhc-cchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeee
Confidence 999999999996 4577788999999996 8899999999999999999999999999999999
Q ss_pred hhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 028846 146 DKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCG 202 (203)
Q Consensus 146 ~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~~~~C~gf~C~ 202 (203)
+||++|+.++..|++++++++|+|||+|.|+.++++++++++++||++.+||||.|-
T Consensus 160 dKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~ 216 (217)
T KOG0859|consen 160 DKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCP 216 (217)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999985
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=204.17 Aligned_cols=173 Identities=25% Similarity=0.488 Sum_probs=151.8
Q ss_pred ceEEEEEEe--CCeEEEeecC---CCCC----HHHHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 028846 5 SLIYAFVAR--GNVVLAEYTE---FSGN----FNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (203)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~---~~~~----~~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~ 74 (203)
+|++++|+| ++.|||...+ .+++ +.+.++.+++++.+. +.+.|.+.|+|.|||++++|++|+++||..||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 589999999 6799986644 1233 367899999999987 78999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCC-CCCCCcchHHhh-----------------HHHHHHHHHhhhhhhhhhhHHHHHH
Q 028846 75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFG-----------------KLAKVKAQVSEVKGVMMENIEKVLD 136 (203)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~l~~~f~-----------------kl~~~~~~~~~v~~im~~ni~~~l~ 136 (203)
+++||.||+++.+||.+.|+..... .+.||++ -+|| .+.++++++.+++.+|.+|+++++.
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~ 159 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQ 159 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 9999999999999999999644332 4678887 3443 6788999999999999999999999
Q ss_pred hhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHH
Q 028846 137 RGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKL 178 (203)
Q Consensus 137 Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~i 178 (203)
|||.|+.+...+.+|+..|+..+++|+.++++..|.+|.-++
T Consensus 160 rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~ 201 (216)
T KOG0862|consen 160 RGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYV 201 (216)
T ss_pred hchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988433
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-27 Score=180.21 Aligned_cols=138 Identities=23% Similarity=0.351 Sum_probs=121.0
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCC----C
Q 028846 29 NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAP----A 103 (203)
Q Consensus 29 ~~ia~~il~ki~~~~~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~----~ 103 (203)
.-+++.+.++.+|++ +++++.+.|..|.. ..||+++++++|.+||.|+||.+|+++.++|....++.+|+... +
T Consensus 41 ~F~sktvaeRt~~g~-rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~~ 119 (198)
T KOG0861|consen 41 TFISKTVAERTGPGQ-RQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADLS 119 (198)
T ss_pred HHHHHHHHHhcCccc-ccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCCC
Confidence 347899999999986 89999999999954 56799999999999999999999999999998888788888432 2
Q ss_pred Ccc----hHHh------hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHH
Q 028846 104 NGL----NKEF------GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 167 (203)
Q Consensus 104 ~~l----~~~f------~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 167 (203)
++. ..+| ++|.++|+++||+|.||++.|+.+|+|||+||+|++||++|+.+|+.|+++|++.++
T Consensus 120 ~~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 120 YPYLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred chhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 332 1233 499999999999999999999999999999999999999999999999999988663
No 4
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.95 E-value=2.5e-27 Score=165.82 Aligned_cols=87 Identities=47% Similarity=0.839 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 190 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~i 190 (203)
+++.++++++++|+++|.+|++++++|||+|++|+++|++|+.+|..|+++|+++++++||+++|+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 028846 191 IVLSVCH 197 (203)
Q Consensus 191 i~~~~C~ 197 (203)
|++.+||
T Consensus 83 i~~~~~g 89 (89)
T PF00957_consen 83 IIIVICG 89 (89)
T ss_dssp HHHTT--
T ss_pred HHHHHhC
Confidence 9999996
No 5
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5e-27 Score=167.34 Aligned_cols=86 Identities=41% Similarity=0.716 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALIL 189 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ 189 (203)
-+++.++|+|++||.+||++|++|+||||++|++|++||++|+..|..|.++|.+++|+|||++.|+.++++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHh
Q 028846 190 IIVLSV 195 (203)
Q Consensus 190 ii~~~~ 195 (203)
+|++++
T Consensus 108 iiii~~ 113 (116)
T KOG0860|consen 108 VIIIYI 113 (116)
T ss_pred HHHHHH
Confidence 776654
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.83 E-value=1.5e-19 Score=140.22 Aligned_cols=143 Identities=23% Similarity=0.345 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEe-CCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCC-CCCCc-
Q 028846 30 SIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVD-NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANG- 105 (203)
Q Consensus 30 ~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~-~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~- 105 (203)
..+..+|..+.|. .++.+++.++|.|||... +|++|.|+++++||.++|+..++++..+|.......++.. ..++.
T Consensus 32 ~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~ 111 (190)
T COG5143 32 SKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLAYGYLNSIATEFLKSSALEQLIDDTVGIMR 111 (190)
T ss_pred chHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhhhhHHHHhhccHhhhhhhHhhcccCccchhh
Confidence 4667777776654 456788899999999875 5999999999999999999999999988866553332221 11111
Q ss_pred --c---hHH-h------hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHH
Q 028846 106 --L---NKE-F------GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQ 172 (203)
Q Consensus 106 --l---~~~-f------~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~ 172 (203)
+ .+. + |+++++++++++++.+|.+|+++++.|||+|+.|.++|+.|...|+.|+++|++.+..+||+
T Consensus 112 ~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 112 VNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred hhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 1 111 2 38999999999999999999999999999999999999999999999999999999999994
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.82 E-value=1.9e-19 Score=124.18 Aligned_cols=80 Identities=34% Similarity=0.713 Sum_probs=72.5
Q ss_pred HHHHHHhcCCCCC-CeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHH
Q 028846 31 IAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE 109 (203)
Q Consensus 31 ia~~il~ki~~~~-~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~ 109 (203)
+|+++|+++++.+ +|.+++.+++.|||+++||++|+|+||++||+++||.||++|+++|.++|+.+++..+.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5889999999765 899999999999999999999999999999999999999999999999997677888889999 88
Q ss_pred hh
Q 028846 110 FG 111 (203)
Q Consensus 110 f~ 111 (203)
|+
T Consensus 80 F~ 81 (83)
T PF13774_consen 80 FD 81 (83)
T ss_dssp HH
T ss_pred cC
Confidence 86
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0004 Score=54.49 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIAL 187 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~ 187 (203)
|-+...++...++++.+|..|+++.++||++.....++..+++.+.+.|++-..+...++|||.-|+=.+++....+.
T Consensus 93 ~~~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~ 170 (190)
T COG5143 93 FLKSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILL 170 (190)
T ss_pred hhhhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 335566788889999999999999999999999999999999999999999999999999999999888777655443
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.86 E-value=0.027 Score=38.85 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
++++++..+.+.-+-+.++-+++=+=.++-+.|.+.|+....+|...++.. +...++-+-+.+++++++++++++.
T Consensus 11 ~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~----~~~~~k~~~i~~~iv~~~~~~i~~~ 86 (89)
T PF00957_consen 11 QVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM----WWRNYKLYIIIIIIVIIIILIIIIV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhHHhhhhhhhhHHHHH
Confidence 566666666666666667777777777777888888888888888876543 3334455555555555555555543
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.53 E-value=0.085 Score=36.69 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=47.0
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhh----------HHHHHHHHHHHhhHHHHHHHHHH
Q 028846 115 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST----------GTKMRRKMWLQNMKIKLIVLGIL 184 (203)
Q Consensus 115 ~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~----------a~~l~~~~~~~~~k~~iii~~iv 184 (203)
++-+.+..++..|.+.+++. ...++.|.+.|+.|......|..- -+++.|+.|.-++.+++.+.+++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777777777766543 455666667777666544333321 25566777777777777666666
Q ss_pred HHHHHHHH
Q 028846 185 IALILIIV 192 (203)
Q Consensus 185 ~~~~~ii~ 192 (203)
++++||+|
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 66667665
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.059 Score=44.93 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 155 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s 155 (203)
.+.+++.++.||.+|+++=-.-+=+-|+.+|.+++.-++.+.+.
T Consensus 181 ~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 181 AIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 67788999999999998877777899999999998877776553
No 12
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.01 E-value=0.22 Score=40.46 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 153 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~ 153 (203)
.|.+++.-+.|+.+...+=-..+.++.|..|.+.+..++-..
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~ 227 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQE 227 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHh
Confidence 455555555565555555456778899998888877666553
No 13
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=0.21 Score=42.35 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 150 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~ 150 (203)
.+.+++..+.|++++..+=--.+...||.+|.++...++
T Consensus 207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~ 245 (297)
T KOG0810|consen 207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVEN 245 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 556666777777666655555667888888887754443
No 14
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=0.46 Score=42.73 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=63.7
Q ss_pred EEEEEEeCCeEEEeecCCCCCHHH----HHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHHH
Q 028846 7 IYAFVARGNVVLAEYTEFSGNFNS----IAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (203)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~~~~----ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~--~~~~~~itd~~~~~~~af~ 80 (203)
.++.+.+|+.+|..|.....+|.. +++.+|-.-. .+--+++.+.|+..|-.++ +++|+|+-.+-..-..+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er--~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER--GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh--cCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 477889999999999877666543 4444433211 1122377888888876654 7999999888888788889
Q ss_pred HHHHHHHHHHhhcC
Q 028846 81 FLERVKDEFVSKYG 94 (203)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (203)
||+++.+.|...|.
T Consensus 82 ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 82 LLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999885
No 15
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=92.85 E-value=2.2 Score=29.48 Aligned_cols=38 Identities=5% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhh
Q 028846 113 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 150 (203)
Q Consensus 113 l~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~ 150 (203)
|....+.+.+.-+-...|++.+.+.-+.|..+.+.=.+
T Consensus 10 L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~ 47 (92)
T PF03908_consen 10 LRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDG 47 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444444444556666666666666665544333
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=92.08 E-value=1.7 Score=35.73 Aligned_cols=39 Identities=15% Similarity=0.439 Sum_probs=16.9
Q ss_pred hhhhHhHHHHHhhHHHHHHH---HHHHhhHHHHHHHHHHHHHHH
Q 028846 149 ENLHQQAQDFRSTGTKMRRK---MWLQNMKIKLIVLGILIALIL 189 (203)
Q Consensus 149 ~~L~~~s~~f~~~a~~l~~~---~~~~~~k~~iii~~iv~~~~~ 189 (203)
+.+..+.....+.+.+++.. .|+ ++.|++++++++++++
T Consensus 202 ~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 202 EGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Confidence 33344444455544444432 233 4445544444444333
No 17
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=91.94 E-value=4 Score=30.30 Aligned_cols=126 Identities=14% Similarity=0.267 Sum_probs=72.2
Q ss_pred ceEEEEEEe--CCeEEEeec-CCCCC-----HHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcc
Q 028846 5 SLIYAFVAR--GNVVLAEYT-EFSGN-----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQ 76 (203)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~-~~~~~-----~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~ 76 (203)
||..-+|.. |.++++-|= ..+.. ++...+.+..+-+. .--.+..+++.+-|...+++.++++++.+...-
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSK--QSPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSS--STSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccc--cceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 455555655 346666653 22221 23333333333221 124577899988888889999999999999998
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 028846 77 IPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGKLAKVKAQVSEVKGVMMENIEKVLDR 137 (203)
Q Consensus 77 ~af~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~kl~~~~~~~~~v~~im~~ni~~~l~R 137 (203)
....||+.+.+.+..-++ +. ....+...|+.+-.+-+|+=+---++.-+-+.+++|
T Consensus 79 ~~~e~l~~~v~~l~~~~~--~v---~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~ 134 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFG--NV---SEKDILENFDLVYLILDEIIDGGIILETDPNVILKR 134 (141)
T ss_dssp HHHHHHHHHHHHHHHHHS--S----SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhc--cc---cHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence 999999999988877663 11 222333445544444444333323333344444433
No 18
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=91.63 E-value=0.64 Score=38.78 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHHHHHHHHHHHHHhhcC
Q 028846 29 NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (203)
Q Consensus 29 ~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~--~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 94 (203)
..+++.+|-.=.. ...+|++++|..+|...| +++|++|--.-+.-..+=.||+.|+..|...|.
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~ 70 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYK 70 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHh
Confidence 3455555433222 235689999999998876 799999988888888888999999999999985
No 19
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.07 E-value=4.7 Score=26.46 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=25.2
Q ss_pred hhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 137 RGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 137 Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
..++++.++..++.+......-..+-.++.-...| -+.+++++++.+++..|
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554555544433 12244455554444333
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=7.4 Score=28.26 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=17.7
Q ss_pred hHHHHHHhhhhhHHHHhhhhhhhHhHHHHHh
Q 028846 130 NIEKVLDRGEKIELLVDKTENLHQQAQDFRS 160 (203)
Q Consensus 130 ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 160 (203)
.++.+-+| -|.|.+-|+.-...|...++
T Consensus 58 kL~~L~dr---ad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 58 KLDELDDR---ADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444444 45566677778888877655
No 21
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.94 E-value=5.9 Score=33.08 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhh----HhHHHHHhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH----QQAQDFRST 161 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~----~~s~~f~~~ 161 (203)
.+.++..-+.|+..|..+=-.-+.+.|+-++.+...-++.+ ..++...+.
T Consensus 196 eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA 249 (283)
T COG5325 196 EIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKA 249 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHh
Confidence 56667777778877877777778889988887775444444 334455443
No 22
>PTZ00478 Sec superfamily; Provisional
Probab=87.19 E-value=2.3 Score=28.80 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 134 VLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 134 ~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
+.+..+.++.+.+...+.-.+|.+|-+.++|=.|+-+.+-.+...+.++++-++.|+|
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~I 66 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSI 66 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556677777777777888888888888888888888787777666665555554
No 23
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=85.09 E-value=3.8 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=34.8
Q ss_pred HHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028846 143 LLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 193 (203)
Q Consensus 143 ~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~~ 193 (203)
.+.+...+.-.++.++-+.++|=-++-.++..+...+.++++-++.|+|=+
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777777888888888777776666666666543
No 24
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=84.30 E-value=5.6 Score=32.53 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=6.9
Q ss_pred chHHHHHHHHH
Q 028846 76 QIPMAFLERVK 86 (203)
Q Consensus 76 ~~af~fL~~i~ 86 (203)
.+--.||+.|+
T Consensus 104 ~~r~Kf~~~I~ 114 (280)
T COG5074 104 NVRQKFLKLIQ 114 (280)
T ss_pred HHHHHHHHHHH
Confidence 34457787775
No 25
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.62 E-value=1 Score=44.42 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=36.1
Q ss_pred hhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHH
Q 028846 128 MENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 170 (203)
Q Consensus 128 ~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 170 (203)
..-.+.+.+|||+|+.++++|++|++++..|...|.++..++-
T Consensus 944 ~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~ 986 (993)
T KOG1983|consen 944 SGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYK 986 (993)
T ss_pred hhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhh
Confidence 3445778999999999999999999999999998877764443
No 26
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.92 E-value=18 Score=31.41 Aligned_cols=90 Identities=16% Similarity=0.279 Sum_probs=61.2
Q ss_pred CCCcceEEEEEEeCCeEEEee-c-CCCCCHHHHHH-HHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcch
Q 028846 1 MSQKSLIYAFVARGNVVLAEY-T-EFSGNFNSIAY-QCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI 77 (203)
Q Consensus 1 ~~~~~i~Ya~Iar~~~iLae~-~-~~~~~~~~ia~-~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~ 77 (203)
|..+.+.|. .||++++... . +-.++..++-+ .++....-.. -..+.++-+|||...+++-.++||........
T Consensus 1 misglfi~n--~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~--PV~~igsttf~~~r~~nl~lvaitksN~Nva~ 76 (446)
T KOG0938|consen 1 MISGLFIYN--LRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRS--PVLTIGSTTFHHIRSSNLWLVAITKSNANVAA 76 (446)
T ss_pred CcceEEEEe--ccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCC--CeeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence 444555553 5788877753 2 23456555443 2233322221 25678999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHhhcC
Q 028846 78 PMAFLERVKDEFVSKYG 94 (203)
Q Consensus 78 af~fL~~i~~~f~~~~~ 94 (203)
.|.||.++-+.+..-++
T Consensus 77 v~eFl~kl~avm~aYfg 93 (446)
T KOG0938|consen 77 VFEFLYKLDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999888766553
No 27
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.83 E-value=10 Score=27.47 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHh----hhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD----KTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIAL 187 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~----ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~ 187 (203)
.++.++++|..+|..-.+--+++-....-|+.+.+ -+.-|+..-.+|+.=|++-.++.| .|.+++++|+++
T Consensus 37 ~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~~f 111 (118)
T KOG3385|consen 37 AAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVAFF 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHHH
Confidence 56778888888877654433333333333333332 222233333455554554333333 345555555444
Q ss_pred HHH
Q 028846 188 ILI 190 (203)
Q Consensus 188 ~~i 190 (203)
++.
T Consensus 112 i~~ 114 (118)
T KOG3385|consen 112 ILW 114 (118)
T ss_pred Hhh
Confidence 433
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=79.81 E-value=31 Score=28.04 Aligned_cols=19 Identities=11% Similarity=0.460 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 028846 181 LGILIALILIIVLSVCHGF 199 (203)
Q Consensus 181 ~~iv~~~~~ii~~~~C~gf 199 (203)
+.++++++|+.++.+-|+|
T Consensus 156 aml~Vf~LF~lvmt~g~d~ 174 (230)
T PF03904_consen 156 AMLFVFMLFALVMTIGSDF 174 (230)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3334444444444444443
No 29
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.81 E-value=14 Score=31.35 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.6
Q ss_pred HhHHHHHhh
Q 028846 153 QQAQDFRST 161 (203)
Q Consensus 153 ~~s~~f~~~ 161 (203)
.+|..|..+
T Consensus 244 ~~A~~~V~~ 252 (297)
T KOG0810|consen 244 ENAVDYVEQ 252 (297)
T ss_pred HHHHHHHHH
Confidence 345555554
No 30
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=79.51 E-value=5 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=30.8
Q ss_pred eCCeEEEEEE---eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 028846 50 CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (203)
Q Consensus 50 ~~~~~~~~l~---~~~~~~~~itd~~~~~~~af~fL~~i~~ 87 (203)
.|||-.+|.. +++-+++|.+..+.|+-++...|.|++.
T Consensus 70 IDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 70 IDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred ccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 4899888876 4689999999999999999999999964
No 31
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=79.40 E-value=0.66 Score=42.63 Aligned_cols=11 Identities=9% Similarity=0.450 Sum_probs=5.3
Q ss_pred HHHHHHHhhhh
Q 028846 114 AKVKAQVSEVK 124 (203)
Q Consensus 114 ~~~~~~~~~v~ 124 (203)
-.+..|+++++
T Consensus 511 LNLt~EI~~Lq 521 (610)
T PF01601_consen 511 LNLTSEIDELQ 521 (610)
T ss_dssp HHHHHHHHHHH
T ss_pred eccHHHHHHHH
Confidence 34555554443
No 32
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=77.96 E-value=22 Score=34.37 Aligned_cols=8 Identities=0% Similarity=-0.093 Sum_probs=3.5
Q ss_pred HhhHHHHH
Q 028846 172 QNMKIKLI 179 (203)
Q Consensus 172 ~~~k~~ii 179 (203)
-.|||++-
T Consensus 410 ~~yR~~~~ 417 (806)
T PF05478_consen 410 DSYRWIVG 417 (806)
T ss_pred HHHHHHHH
Confidence 34444443
No 33
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.75 E-value=31 Score=29.17 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD 146 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ 146 (203)
.+..++..+.|+-+|+.+=-..+=+.||-+.-+.+
T Consensus 228 ~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~ 262 (311)
T KOG0812|consen 228 TMQNIESTISELGGIFQQLASMVSEQEETIQRIDD 262 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788888888887655566666665444443
No 34
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=77.67 E-value=22 Score=26.56 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHhcCCCC---------CCeeEEEeCCeEEEEEE-eCCEEEEEEecCCCCcchHHHHHHHHHHHHHh
Q 028846 33 YQCLQKLPAS---------NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVS 91 (203)
Q Consensus 33 ~~il~ki~~~---------~~k~~~~~~~~~~~~l~-~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~ 91 (203)
+.+..++.|. ..-.+++.+.|..|++- -.|+-|+++||+..+. ..-.+++.+.+.|.+
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~d 113 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVD 113 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHH
Confidence 5566777761 24567888999999875 5799999999999863 444566666666644
No 35
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.29 E-value=27 Score=28.66 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=7.3
Q ss_pred HHHHHhhhhhhhhhhHHHH
Q 028846 116 VKAQVSEVKGVMMENIEKV 134 (203)
Q Consensus 116 ~~~~~~~v~~im~~ni~~~ 134 (203)
.|+++-+=++...++|.+.
T Consensus 142 ~qqqm~~eQDe~Ld~ls~t 160 (235)
T KOG3202|consen 142 LQQQMLQEQDEGLDGLSAT 160 (235)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444333
No 36
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=74.75 E-value=2 Score=26.46 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=7.3
Q ss_pred HHHHhcc-----CCccc
Q 028846 191 IVLSVCH-----GFNCG 202 (203)
Q Consensus 191 i~~~~C~-----gf~C~ 202 (203)
..+++|. |++|+
T Consensus 16 Lg~~I~~~~K~ygYkht 32 (50)
T PF12606_consen 16 LGLSICTTLKAYGYKHT 32 (50)
T ss_pred HHHHHHHHhhccccccc
Confidence 3345662 77886
No 37
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=73.29 E-value=23 Score=27.54 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 160 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 160 (203)
-...+..++++++.-|.+.|+++-..-++||.+..++..|.+.+..+..
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788999999999999999988888888888888777777665544
No 38
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=72.93 E-value=8 Score=26.78 Aligned_cols=13 Identities=0% Similarity=0.141 Sum_probs=5.5
Q ss_pred HHHHHHHhhHHHH
Q 028846 166 RRKMWLQNMKIKL 178 (203)
Q Consensus 166 ~~~~~~~~~k~~i 178 (203)
|+..|+...+.++
T Consensus 6 kK~K~k~~l~~~~ 18 (96)
T PF13800_consen 6 KKAKRKSRLRTVV 18 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 39
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=72.84 E-value=2.1 Score=32.53 Aligned_cols=31 Identities=29% Similarity=0.570 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 028846 163 TKMRRKMWLQNMKIKLIVLGILIALILIIVLSVC 196 (203)
Q Consensus 163 ~~l~~~~~~~~~k~~iii~~iv~~~~~ii~~~~C 196 (203)
.+.||.. -+|+..+++++||+++++|++.+|
T Consensus 125 ae~kr~K---~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 125 AELKRSK---VCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHheEEEEEEEE
Confidence 4444443 346667777778788888888888
No 40
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=72.59 E-value=5.9 Score=31.17 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=23.8
Q ss_pred HHHHHhhhhhhhhh--hHHHHHHhhhhhHHHHhhhhhhhH
Q 028846 116 VKAQVSEVKGVMME--NIEKVLDRGEKIELLVDKTENLHQ 153 (203)
Q Consensus 116 ~~~~~~~v~~im~~--ni~~~l~Rge~l~~l~~ks~~L~~ 153 (203)
.+-|++.++.+|++ |-+.+++|.-.=.+|.++-++|..
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~ 60 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLET 60 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhh
Confidence 34456677778876 778888775544555555555543
No 41
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=71.38 E-value=9.1 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028846 161 TGTKMRRKMWLQNMKIKLIVLGILIA 186 (203)
Q Consensus 161 ~a~~l~~~~~~~~~k~~iii~~iv~~ 186 (203)
-.++.||+..|++.-+.+++++++++
T Consensus 4 i~kK~K~k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIISALVIFI 29 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 35889999999999988887544443
No 42
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=69.72 E-value=15 Score=23.52 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=30.9
Q ss_pred hhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028846 150 NLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 193 (203)
Q Consensus 150 ~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~~ 193 (203)
+.-.++.++-+.+++=.|+-+++..+...+.++++-++.|+|=+
T Consensus 8 ~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikl 51 (61)
T TIGR00327 8 EFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKI 51 (61)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777877888888888887777666666665543
No 43
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=67.77 E-value=3.2 Score=28.90 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 028846 173 NMKIKLIVLGILIALILIIVLSVC 196 (203)
Q Consensus 173 ~~k~~iii~~iv~~~~~ii~~~~C 196 (203)
.||+++..++-++++++||.+..|
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHH
Confidence 466777777656665666666666
No 44
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.73 E-value=22 Score=30.05 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 150 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~ 150 (203)
.+.++-+-+.|+.+|+.+=-..+.+.|--+|-+.-.-|+
T Consensus 219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEq 257 (305)
T KOG0809|consen 219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhh
Confidence 366667777778888877777788888777665533333
No 45
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.24 E-value=22 Score=23.02 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=27.2
Q ss_pred hHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 141 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 141 l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
++.+.+-+.+-..+|..|.+++.+=-|+-+-+-.+-..+.+++.-++.|.|
T Consensus 4 ~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~v 54 (67)
T KOG3498|consen 4 VDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFV 54 (67)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555556666666666556666555555555444444444443
No 46
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.09 E-value=60 Score=25.13 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKV 134 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~ 134 (203)
...+++.+++.+++-+.+-++++
T Consensus 81 ~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 81 ENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666553
No 47
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=59.76 E-value=80 Score=28.22 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhhhhhhhH
Q 028846 114 AKVKAQVSEVKGVMMENI 131 (203)
Q Consensus 114 ~~~~~~~~~v~~im~~ni 131 (203)
+.+.++++.+.+.+...+
T Consensus 126 ~~l~nqv~~l~~al~~t~ 143 (418)
T cd07912 126 AGIDNQTSDTEASLNVTV 143 (418)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 334444444444443333
No 48
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.01 E-value=95 Score=25.09 Aligned_cols=18 Identities=11% Similarity=0.420 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMME 129 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ 129 (203)
.|.+.-+.+.|-+.|+.|
T Consensus 129 rLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 129 RLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 344444555555555444
No 49
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=58.70 E-value=84 Score=27.88 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhhhh
Q 028846 114 AKVKAQVSEVKGVM 127 (203)
Q Consensus 114 ~~~~~~~~~v~~im 127 (203)
..++.+++++..-|
T Consensus 106 ~~i~~~v~~~~~~l 119 (406)
T PF04906_consen 106 SGIDNLVSDTTEAL 119 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 50
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=58.05 E-value=43 Score=20.76 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
.|..+...+.+++++..+=-+.+-+.++-|+.+.+..+.-...
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 5778888999998888766677778888888888766655443
No 51
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=57.98 E-value=97 Score=25.35 Aligned_cols=12 Identities=8% Similarity=0.423 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q 028846 80 AFLERVKDEFVS 91 (203)
Q Consensus 80 ~fL~~i~~~f~~ 91 (203)
.+-.+++++...
T Consensus 113 ~~~~eLR~~ll~ 124 (251)
T PF09753_consen 113 RYTSELRKRLLS 124 (251)
T ss_pred hhhHHHHhhhcc
Confidence 344566666544
No 52
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=57.95 E-value=23 Score=26.80 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=9.6
Q ss_pred HHHHhhHHHHHHHHHHHhhH
Q 028846 156 QDFRSTGTKMRRKMWLQNMK 175 (203)
Q Consensus 156 ~~f~~~a~~l~~~~~~~~~k 175 (203)
...-....+++|.-+|++++
T Consensus 79 ~~LV~k~sk~~r~n~~kk~~ 98 (147)
T PF05659_consen 79 KELVEKCSKVRRWNLYKKPR 98 (147)
T ss_pred HHHHHHhccccHHHHHhhHh
Confidence 33444444555555555554
No 53
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=57.93 E-value=51 Score=21.64 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=15.8
Q ss_pred hhhHHHHhhhhhhhHhHHHHHhhHHHHHHHH
Q 028846 139 EKIELLVDKTENLHQQAQDFRSTGTKMRRKM 169 (203)
Q Consensus 139 e~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 169 (203)
+|||.+++|-|. .+|.-+++..+++-|-.
T Consensus 19 ~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 19 KRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 444455544443 34556777777766543
No 54
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=55.51 E-value=14 Score=25.11 Aligned_cols=6 Identities=67% Similarity=0.899 Sum_probs=2.3
Q ss_pred HHHHHH
Q 028846 175 KIKLIV 180 (203)
Q Consensus 175 k~~iii 180 (203)
|+++++
T Consensus 5 kii~ii 10 (85)
T PF11337_consen 5 KIILII 10 (85)
T ss_pred HHHHHH
Confidence 333333
No 55
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=54.99 E-value=81 Score=24.30 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 028846 80 AFLERVKDEFV 90 (203)
Q Consensus 80 ~fL~~i~~~f~ 90 (203)
.||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 46666665543
No 56
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=54.89 E-value=8 Score=34.19 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=10.2
Q ss_pred HHHHHHHHhccC
Q 028846 187 LILIIVLSVCHG 198 (203)
Q Consensus 187 ~~~ii~~~~C~g 198 (203)
+.|+-||++|+|
T Consensus 384 vGfLcWwf~crg 395 (397)
T PF03302_consen 384 VGFLCWWFICRG 395 (397)
T ss_pred HHHHhhheeecc
Confidence 458899999987
No 57
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=54.80 E-value=17 Score=35.68 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028846 164 KMRRKMWLQNMKIKLIVLGILIALILI 190 (203)
Q Consensus 164 ~l~~~~~~~~~k~~iii~~iv~~~~~i 190 (203)
|--+...|+.|+++|+..++++++++.
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~ 1086 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLL 1086 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334567899999999887665554443
No 58
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=53.61 E-value=55 Score=20.81 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.7
Q ss_pred HhHHHHHhh
Q 028846 153 QQAQDFRST 161 (203)
Q Consensus 153 ~~s~~f~~~ 161 (203)
+.|..|-+.
T Consensus 9 ETA~~FL~R 17 (60)
T PF06072_consen 9 ETATEFLRR 17 (60)
T ss_pred ccHHHHHHH
Confidence 445556543
No 59
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=52.94 E-value=93 Score=25.36 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=10.5
Q ss_pred hhhhhhhHhHHHHHhhHHH
Q 028846 146 DKTENLHQQAQDFRSTGTK 164 (203)
Q Consensus 146 ~ks~~L~~~s~~f~~~a~~ 164 (203)
..++.|...|...++.+++
T Consensus 194 ~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 194 VNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred HHHHHHHhhhHHHHHHHHh
Confidence 3455666666666555433
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.29 E-value=1.2e+02 Score=24.27 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=7.3
Q ss_pred hhhhHHHHhhhhhhhHh
Q 028846 138 GEKIELLVDKTENLHQQ 154 (203)
Q Consensus 138 ge~l~~l~~ks~~L~~~ 154 (203)
...+++|.++-++|..+
T Consensus 131 ~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 131 DSVINGLKEENQKLKNQ 147 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 61
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=52.12 E-value=33 Score=19.46 Aligned_cols=17 Identities=18% Similarity=0.624 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHHHH
Q 028846 168 KMWLQNMKIKLIVLGIL 184 (203)
Q Consensus 168 ~~~~~~~k~~iii~~iv 184 (203)
+.|-||...-+.+..++
T Consensus 17 qkwirnit~cfal~vv~ 33 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVV 33 (40)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888877655544443
No 62
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.21 E-value=1.6e+02 Score=25.26 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=11.4
Q ss_pred HHHHHhhhhhHHHHh
Q 028846 132 EKVLDRGEKIELLVD 146 (203)
Q Consensus 132 ~~~l~Rge~l~~l~~ 146 (203)
+++++...+||-+.+
T Consensus 253 ehvl~Q~~~Id~I~d 267 (316)
T KOG3894|consen 253 EHVLQQDQNIDLIHD 267 (316)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467788888887776
No 63
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=49.33 E-value=85 Score=25.58 Aligned_cols=27 Identities=4% Similarity=0.024 Sum_probs=15.4
Q ss_pred hHhHHHHHhhHHHHHHHHHHH-hhHHHH
Q 028846 152 HQQAQDFRSTGTKMRRKMWLQ-NMKIKL 178 (203)
Q Consensus 152 ~~~s~~f~~~a~~l~~~~~~~-~~k~~i 178 (203)
..++...+-.+.++.+...-+ .+++++
T Consensus 193 D~N~~~L~~~Serve~y~ksk~s~wf~~ 220 (244)
T KOG2678|consen 193 DVNSQGLMDVSERVEKYDKSKLSYWFYI 220 (244)
T ss_pred hHHHHHHHhhhHHHHHHHHhhhhHHHHH
Confidence 345556666677777766544 344333
No 64
>PRK13664 hypothetical protein; Provisional
Probab=47.80 E-value=36 Score=21.49 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=9.2
Q ss_pred HHHhhHHHHHHHHHH
Q 028846 170 WLQNMKIKLIVLGIL 184 (203)
Q Consensus 170 ~~~~~k~~iii~~iv 184 (203)
|...|+|++++.+.|
T Consensus 3 WLadyWWilill~lv 17 (62)
T PRK13664 3 WLAKYWWILVLVFLV 17 (62)
T ss_pred hHHHHHHHHHHHHHH
Confidence 677777775544433
No 65
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=47.72 E-value=1.9e+02 Score=28.06 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=10.9
Q ss_pred HHhhHHHHHHHHHHHHHH---HHHHHHhcc
Q 028846 171 LQNMKIKLIVLGILIALI---LIIVLSVCH 197 (203)
Q Consensus 171 ~~~~k~~iii~~iv~~~~---~ii~~~~C~ 197 (203)
+|.+--.++..+++++++ +....+.||
T Consensus 412 yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444433333333 333444554
No 66
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.48 E-value=73 Score=25.51 Aligned_cols=14 Identities=21% Similarity=0.499 Sum_probs=6.9
Q ss_pred HhHHHHHhhHHHHH
Q 028846 153 QQAQDFRSTGTKMR 166 (203)
Q Consensus 153 ~~s~~f~~~a~~l~ 166 (203)
+.+...+.++...+
T Consensus 160 dKTenl~~~s~~fr 173 (217)
T KOG0859|consen 160 DKTENLRSKSFDFR 173 (217)
T ss_pred chhhhhhhhhHHHH
Confidence 44555555554433
No 67
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=46.14 E-value=33 Score=19.79 Aligned_cols=7 Identities=14% Similarity=0.534 Sum_probs=3.4
Q ss_pred HHHHHhc
Q 028846 190 IIVLSVC 196 (203)
Q Consensus 190 ii~~~~C 196 (203)
.++..+|
T Consensus 22 ~~~~YaC 28 (38)
T PF02439_consen 22 CMFYYAC 28 (38)
T ss_pred HHHHHHH
Confidence 3444556
No 68
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=45.73 E-value=34 Score=22.73 Aligned_cols=19 Identities=42% Similarity=1.057 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 028846 179 IVLGILIALILIIVLSVCH 197 (203)
Q Consensus 179 ii~~iv~~~~~ii~~~~C~ 197 (203)
+++++++++++++...+|+
T Consensus 6 ~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhheeEEEEE
Confidence 3344444444444455553
No 69
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=45.33 E-value=67 Score=19.25 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
.+.++...+.+++++..+=-..+-+-|+.|+.+.+..+.....
T Consensus 7 ~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 7 ELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888776654455666677888887665555544
No 70
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.85 E-value=1.7e+02 Score=23.82 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHH-----HHHHHHhhHHHHHHH
Q 028846 126 VMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMR-----RKMWLQNMKIKLIVL 181 (203)
Q Consensus 126 im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~-----~~~~~~~~k~~iii~ 181 (203)
.+.-+++.+.++-+++..--.++..+++-+..+..+=+.|- |-.||.-.-...+++
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~ 210 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMIL 210 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHH
Confidence 44456677777777777777777777777666655433333 445777665444433
No 71
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.50 E-value=1.7e+02 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 028846 79 MAFLERVKDEFVS 91 (203)
Q Consensus 79 f~fL~~i~~~f~~ 91 (203)
+..|++..++|..
T Consensus 95 rEILqdy~qef~r 107 (231)
T KOG3208|consen 95 REILQDYTQEFRR 107 (231)
T ss_pred HHHHHHHHHHHHH
Confidence 4466666666644
No 72
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=44.39 E-value=2.3e+02 Score=25.18 Aligned_cols=87 Identities=6% Similarity=0.053 Sum_probs=55.4
Q ss_pred EEEEEEeCCeEEEeecCCCC---CHHHHHHHHHhcCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 028846 7 IYAFVARGNVVLAEYTEFSG---NFNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (203)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~---~~~~ia~~il~ki~~-~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 82 (203)
++-..+..++++...-..+. .+-.+.+.++.-... ++.-..++.|+..|.|+..+++.++||+..+-+......-|
T Consensus 13 h~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL 92 (415)
T PF03164_consen 13 HFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQL 92 (415)
T ss_pred eEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHH
Confidence 34445555666654322121 123344444443322 24556788899999999999999999999988877777777
Q ss_pred HHHHHHHHhhc
Q 028846 83 ERVKDEFVSKY 93 (203)
Q Consensus 83 ~~i~~~f~~~~ 93 (203)
+-+........
T Consensus 93 ~~ly~qils~l 103 (415)
T PF03164_consen 93 DYLYSQILSIL 103 (415)
T ss_pred HHHHHHHHHhc
Confidence 77766554444
No 73
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=43.79 E-value=1.2e+02 Score=24.46 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=10.3
Q ss_pred hhhhHHHHhhhhhhhHhHHH
Q 028846 138 GEKIELLVDKTENLHQQAQD 157 (203)
Q Consensus 138 ge~l~~l~~ks~~L~~~s~~ 157 (203)
++.|+.|+.+-+++.-..+.
T Consensus 14 ~~~L~rle~qi~q~~~~~~~ 33 (251)
T COG5415 14 TADLSRLESQIHQLDVALKK 33 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 74
>PHA03240 envelope glycoprotein M; Provisional
Probab=43.74 E-value=25 Score=28.45 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.4
Q ss_pred eEEEee
Q 028846 16 VVLAEY 21 (203)
Q Consensus 16 ~iLae~ 21 (203)
.+||-|
T Consensus 73 ~plC~Y 78 (258)
T PHA03240 73 HPICTY 78 (258)
T ss_pred ceeEEe
Confidence 334433
No 75
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=43.58 E-value=75 Score=19.36 Aligned_cols=43 Identities=14% Similarity=0.413 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
.+..+...+.+++++..+=-..+-+.++.|+.+.+..+.....
T Consensus 13 ~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 13 ELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6777778888887776655556667788888888766555544
No 76
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=42.97 E-value=73 Score=22.20 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred hhhhHhHHHHHhhHHHHHHH----HHHHhhHHHHHHHHHH
Q 028846 149 ENLHQQAQDFRSTGTKMRRK----MWLQNMKIKLIVLGIL 184 (203)
Q Consensus 149 ~~L~~~s~~f~~~a~~l~~~----~~~~~~k~~iii~~iv 184 (203)
|+|...-+.|.+++.+.++. .+-+|||-.+-..++.
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~ 67 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIG 67 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 55665666677766555533 3456666555444433
No 77
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=42.93 E-value=1e+02 Score=20.69 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=14.6
Q ss_pred hhHHHHhhhhhhhHhHHHHHhhHHHHHHH
Q 028846 140 KIELLVDKTENLHQQAQDFRSTGTKMRRK 168 (203)
Q Consensus 140 ~l~~l~~ks~~L~~~s~~f~~~a~~l~~~ 168 (203)
|||++++|-|. .+|.-|++..+++=|-
T Consensus 23 rLD~iEeKVEf--tn~Ei~Qr~GkkvGRD 49 (77)
T PRK01026 23 RLDEIEEKVEF--TNAEIFQRIGKKVGRD 49 (77)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhH
Confidence 34444444333 3456677777776654
No 78
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=42.25 E-value=16 Score=25.13 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=5.5
Q ss_pred HHHHHHHhc
Q 028846 188 ILIIVLSVC 196 (203)
Q Consensus 188 ~~ii~~~~C 196 (203)
+.+|.+.+|
T Consensus 46 l~VilwfvC 54 (94)
T PF05393_consen 46 LLVILWFVC 54 (94)
T ss_pred HHHHHHHHH
Confidence 445566677
No 79
>PHA02844 putative transmembrane protein; Provisional
Probab=41.84 E-value=23 Score=23.57 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 028846 177 KLIVLGILI 185 (203)
Q Consensus 177 ~iii~~iv~ 185 (203)
+++++.+++
T Consensus 52 ii~i~~v~~ 60 (75)
T PHA02844 52 ILTIIFVVF 60 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 80
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.14 E-value=69 Score=26.37 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 152 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~ 152 (203)
|+..++.-+++..+...+--+.--.+..+++.+..+-..++
T Consensus 193 kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~ 233 (264)
T PF06008_consen 193 KLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELS 233 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444333333333333334444444444333
No 81
>COG5547 Small integral membrane protein [Function unknown]
Probab=40.21 E-value=40 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=9.4
Q ss_pred HHHhhHHHHHHHHH
Q 028846 170 WLQNMKIKLIVLGI 183 (203)
Q Consensus 170 ~~~~~k~~iii~~i 183 (203)
|.+++|+-++.+++
T Consensus 3 flk~fkypIIgglv 16 (62)
T COG5547 3 FLKKFKYPIIGGLV 16 (62)
T ss_pred HHHHhccchHHHHH
Confidence 67778877765543
No 82
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=39.81 E-value=31 Score=30.36 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=14.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 028846 166 RRKMWLQNMKIKLIVLGILIA 186 (203)
Q Consensus 166 ~~~~~~~~~k~~iii~~iv~~ 186 (203)
+++-||.++...+++.+++++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL 314 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLL 314 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHH
Confidence 456799999877766554433
No 83
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.56 E-value=2.3e+02 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=11.4
Q ss_pred hhhhHHHHHHhhhhhHHHHh
Q 028846 127 MMENIEKVLDRGEKIELLVD 146 (203)
Q Consensus 127 m~~ni~~~l~Rge~l~~l~~ 146 (203)
...+.+.+=+|.+-++.|+.
T Consensus 168 ~~~~~~~ieeR~q~I~~lE~ 187 (269)
T KOG0811|consen 168 LEYQLDLIEEREQAIEQLEA 187 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33455555566666666654
No 84
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.53 E-value=1.1e+02 Score=26.92 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcC
Q 028846 51 DAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (203)
Q Consensus 51 ~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~ 94 (203)
..|.++-...+++.+++++..+.|.-.++.||+++-+-|.+-|+
T Consensus 53 p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 53 PHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred CceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 33444445567888888888888888999999999999887664
No 85
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=39.49 E-value=1.4e+02 Score=21.18 Aligned_cols=18 Identities=6% Similarity=0.104 Sum_probs=9.8
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 028846 169 MWLQNMKIKLIVLGILIA 186 (203)
Q Consensus 169 ~~~~~~k~~iii~~iv~~ 186 (203)
.-|++|-..+++.+++.+
T Consensus 40 i~~KKyg~~~il~~l~~l 57 (104)
T PF12420_consen 40 IIFKKYGLIFILPFLVPL 57 (104)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 455666665555544443
No 86
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=39.30 E-value=2.6e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=11.9
Q ss_pred CCCcc-eEEEEEEeCCeEE
Q 028846 1 MSQKS-LIYAFVARGNVVL 18 (203)
Q Consensus 1 ~~~~~-i~Ya~Iar~~~iL 18 (203)
|+++. +.|.++.+++.+.
T Consensus 1 ~~~~~~~~y~a~~~~G~~~ 19 (399)
T PRK10573 1 MASKQLWRWQAINGKGELQ 19 (399)
T ss_pred CCCCCeEEEEEECCCCCEE
Confidence 66554 7888887766543
No 87
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=39.20 E-value=30 Score=29.20 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028846 178 LIVLGILIALILIIVLS 194 (203)
Q Consensus 178 iii~~iv~~~~~ii~~~ 194 (203)
++++++|++|++.||+.
T Consensus 267 vllil~vvliiLYiWly 283 (295)
T TIGR01478 267 VLIILTVVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445556666778874
No 88
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=39.19 E-value=1.5e+02 Score=21.64 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=31.2
Q ss_pred hhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHH
Q 028846 123 VKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRK 168 (203)
Q Consensus 123 v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~ 168 (203)
++....+|.+.++..-..++.++.-.+.+..+......+..+++.+
T Consensus 49 i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 49 IRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888777777776666666666666665666543
No 89
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=39.17 E-value=67 Score=21.93 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=5.4
Q ss_pred hhhhHhHHHHHh
Q 028846 149 ENLHQQAQDFRS 160 (203)
Q Consensus 149 ~~L~~~s~~f~~ 160 (203)
+.|+..+..+.+
T Consensus 78 ~~l~~~a~~~~~ 89 (124)
T PF00482_consen 78 EVLEQLADQLRE 89 (124)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 90
>PF15339 Afaf: Acrosome formation-associated factor
Probab=38.89 E-value=47 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=13.1
Q ss_pred HHHHHH-HHHHHHHHHHHHhcc
Q 028846 177 KLIVLG-ILIALILIIVLSVCH 197 (203)
Q Consensus 177 ~iii~~-iv~~~~~ii~~~~C~ 197 (203)
.+++++ +..+++|++++++|.
T Consensus 131 kLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 131 KLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 455567788888884
No 91
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=38.83 E-value=1.1e+02 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=14.7
Q ss_pred hhHHHHhhhhhhhHhHHHHHhhHHHHHHH
Q 028846 140 KIELLVDKTENLHQQAQDFRSTGTKMRRK 168 (203)
Q Consensus 140 ~l~~l~~ks~~L~~~s~~f~~~a~~l~~~ 168 (203)
|||.+++|-|. .++.-|++..+++-|-
T Consensus 20 rLd~iEeKVEf--~~~E~~Qr~Gkk~GRD 46 (70)
T TIGR01149 20 RLDEIEEKVEF--VNGEVAQRIGKKVGRD 46 (70)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhH
Confidence 34444444443 3456677777776654
No 92
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=38.35 E-value=1.4e+02 Score=20.91 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=9.8
Q ss_pred HHHHhhhhhhhhhhHHH
Q 028846 117 KAQVSEVKGVMMENIEK 133 (203)
Q Consensus 117 ~~~~~~v~~im~~ni~~ 133 (203)
+...+++..-|..++|+
T Consensus 34 q~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 34 QHDQELVNQKLDRTLDE 50 (98)
T ss_pred HhhHHHHHHHHHhhHHH
Confidence 44445555566666665
No 93
>PTZ00370 STEVOR; Provisional
Probab=37.79 E-value=32 Score=29.04 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028846 178 LIVLGILIALILIIVLS 194 (203)
Q Consensus 178 iii~~iv~~~~~ii~~~ 194 (203)
++++++|++|++.||+.
T Consensus 263 vllil~vvliilYiwly 279 (296)
T PTZ00370 263 VLLILAVVLIILYIWLY 279 (296)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445556666778874
No 94
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=37.43 E-value=30 Score=27.76 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=24.6
Q ss_pred HHHHHHHHHH----hhHHHHHH-------------H-HHHHHHHHHHHHHhccCC
Q 028846 163 TKMRRKMWLQ----NMKIKLIV-------------L-GILIALILIIVLSVCHGF 199 (203)
Q Consensus 163 ~~l~~~~~~~----~~k~~iii-------------~-~iv~~~~~ii~~~~C~gf 199 (203)
....++.||+ ..|+++.+ . .......+.|++.+|.||
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567889999 88888764 2 222333456777788777
No 95
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.41 E-value=1.1e+02 Score=24.54 Aligned_cols=17 Identities=35% Similarity=0.734 Sum_probs=11.0
Q ss_pred HHHHhhHHHHH-HHHHHH
Q 028846 156 QDFRSTGTKMR-RKMWLQ 172 (203)
Q Consensus 156 ~~f~~~a~~l~-~~~~~~ 172 (203)
..|+..|...+ |-|||.
T Consensus 170 ~~FR~tSES~NsRvm~Ws 187 (215)
T KOG1690|consen 170 ETFRDTSESANSRVMWWS 187 (215)
T ss_pred HHHHhhhhhhcceeeehh
Confidence 45777776666 556774
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.28 E-value=46 Score=24.40 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 028846 177 KLIVLGILIALIL 189 (203)
Q Consensus 177 ~iii~~iv~~~~~ 189 (203)
..|++++++.++.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3444444444333
No 97
>PHA03164 hypothetical protein; Provisional
Probab=36.26 E-value=52 Score=22.04 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028846 175 KIKLIVLGILIALILIIVL 193 (203)
Q Consensus 175 k~~iii~~iv~~~~~ii~~ 193 (203)
...++-++++..|+++|++
T Consensus 59 tFlvLtgLaIamILfiifv 77 (88)
T PHA03164 59 TFLVLTGLAIAMILFIIFV 77 (88)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 3444444555555555543
No 98
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=36.23 E-value=2.9e+02 Score=25.33 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=33.9
Q ss_pred hhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHH
Q 028846 127 MMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 169 (203)
Q Consensus 127 m~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 169 (203)
+.+-|..+++=.+.+..|.+|=-.|+..+..|...-..++.++
T Consensus 283 l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 283 LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4455666777788899999999999999999988766666555
No 99
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=36.14 E-value=1.1e+02 Score=19.16 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 156 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~ 156 (203)
.|......++++.++-.+.+..+-..++.|.....+..++...-.
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~ 53 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLP 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677778888888888888888888888888877777766544
No 100
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=35.74 E-value=46 Score=22.61 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028846 177 KLIVLGILIALILIIVLSV 195 (203)
Q Consensus 177 ~iii~~iv~~~~~ii~~~~ 195 (203)
..+++++|++++.|+++.+
T Consensus 7 ~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 101
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=35.19 E-value=22 Score=24.87 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=7.8
Q ss_pred HHHHHHHHhccC
Q 028846 187 LILIIVLSVCHG 198 (203)
Q Consensus 187 ~~~ii~~~~C~g 198 (203)
+.++.|+++|++
T Consensus 83 v~~l~w~f~~r~ 94 (96)
T PTZ00382 83 VGFLCWWFVCRG 94 (96)
T ss_pred HHHHhheeEEee
Confidence 446677788753
No 102
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=34.63 E-value=1.3e+02 Score=23.88 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.4
Q ss_pred HHHHHhhhhh
Q 028846 116 VKAQVSEVKG 125 (203)
Q Consensus 116 ~~~~~~~v~~ 125 (203)
=+++++...+
T Consensus 106 W~~~i~~~~~ 115 (204)
T PF00517_consen 106 WEKEISNYTG 115 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhcccHH
Confidence 3444444433
No 103
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=34.04 E-value=72 Score=27.37 Aligned_cols=18 Identities=39% Similarity=0.494 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMME 129 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ 129 (203)
.|.+++.+++.++.+|.+
T Consensus 231 eL~~iqaqL~tvks~m~~ 248 (372)
T COG3524 231 ELIVIQAQLDTVKSVMNP 248 (372)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 677889999999999943
No 104
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=33.60 E-value=70 Score=21.14 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 168 KMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 168 ~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
|.||+..|..++..+..+++-+.|
T Consensus 1 r~~~~~ik~~~LF~~~T~lfYy~~ 24 (71)
T PF14004_consen 1 RRWLDMIKFFLLFTGCTLLFYYAI 24 (71)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888887777665544433
No 105
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.41 E-value=27 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=15.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 028846 167 RKMWLQNMKIKLIVLGILIAL 187 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~iv~~~ 187 (203)
.+.+|.+||||+|-.++|++.
T Consensus 238 eRSF~AKYWMYiiPlglVVl~ 258 (279)
T KOG4827|consen 238 ERSFLAKYWMYIIPLGLVVLF 258 (279)
T ss_pred chhHHHHHHHhhccchhhhhh
Confidence 567899999999977655543
No 106
>PF14992 TMCO5: TMCO5 family
Probab=32.57 E-value=3.1e+02 Score=23.19 Aligned_cols=13 Identities=8% Similarity=0.460 Sum_probs=8.5
Q ss_pred HHHHHHHHhhHHH
Q 028846 165 MRRKMWLQNMKIK 177 (203)
Q Consensus 165 l~~~~~~~~~k~~ 177 (203)
-++..|.|..+++
T Consensus 209 ~~~~~wkr~lr~l 221 (280)
T PF14992_consen 209 NSPTFWKRALRLL 221 (280)
T ss_pred hhhHHHHHHHHHH
Confidence 3356777777764
No 107
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=32.54 E-value=22 Score=27.58 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 028846 181 LGILIALILIIVLSVC 196 (203)
Q Consensus 181 ~~iv~~~~~ii~~~~C 196 (203)
++|++++++||++.+|
T Consensus 82 vgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 82 VGVICGVIAIVVLIVC 97 (179)
T ss_pred eehhhHHHHHHHhHhh
Confidence 3334444444545555
No 108
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.74 E-value=54 Score=22.88 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028846 175 KIKLIVLGILIALILII 191 (203)
Q Consensus 175 k~~iii~~iv~~~~~ii 191 (203)
|.+++++++++++++|.
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444554444444443
No 109
>COG4327 Predicted membrane protein [Function unknown]
Probab=31.73 E-value=99 Score=21.59 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 162 GTKMRRKMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 162 a~~l~~~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
+..-++..|..|..++.++.+|=.++.|+.
T Consensus 6 ~~~~a~aywranttli~~lL~vwflVSfvv 35 (101)
T COG4327 6 AEHPARAYWRANTTLIAALLGVWFLVSFVV 35 (101)
T ss_pred cccHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344556678888887776665544444444
No 110
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=31.57 E-value=1.8e+02 Score=21.09 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=9.3
Q ss_pred HHHHHHhhHHHHHH
Q 028846 167 RKMWLQNMKIKLIV 180 (203)
Q Consensus 167 ~~~~~~~~k~~iii 180 (203)
++.++++|.++-+.
T Consensus 65 ~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 65 KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHHHhHHHHH
Confidence 66778888755443
No 111
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=31.57 E-value=2.4e+02 Score=21.64 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHH
Q 028846 114 AKVKAQVSEVKGVMMENIEKVLD 136 (203)
Q Consensus 114 ~~~~~~~~~v~~im~~ni~~~l~ 136 (203)
.+..++..+..+-+.+.+.+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
T PF00664_consen 166 RKLSKKYQEANSELNSFLSESLS 188 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchh
Confidence 33344444433334444444443
No 112
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=31.46 E-value=2.3e+02 Score=22.46 Aligned_cols=44 Identities=7% Similarity=0.194 Sum_probs=31.1
Q ss_pred hhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 148 TENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 148 s~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
+..+.-.|..|.- ++=|++-.|.=+|-++.=++-..++++|+.|
T Consensus 6 ~~~~a~~a~~~~V-a~vLRWl~W~vky~VI~PlATmaLmalfVlw 49 (202)
T PF07296_consen 6 SSRQAGHALRYVV-ARVLRWLFWCVKYAVIWPLATMALMALFVLW 49 (202)
T ss_pred hhHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555665543 6789999998888777767766777777777
No 113
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=31.41 E-value=86 Score=19.90 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=7.3
Q ss_pred HHHhhHHHHHH
Q 028846 170 WLQNMKIKLIV 180 (203)
Q Consensus 170 ~~~~~k~~iii 180 (203)
|...|+|++++
T Consensus 3 WladYWWiiLl 13 (63)
T PF13980_consen 3 WLADYWWIILL 13 (63)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 114
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=30.81 E-value=1.9e+02 Score=23.81 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=37.8
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEe
Q 028846 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60 (203)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~ 60 (203)
|++|-|..|+.-+..+.........+-+++..++..-+.+ .+..++.++ ||..+.
T Consensus 28 pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN-~Kyayeg~n--YHwvIT 82 (249)
T PF11675_consen 28 PKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESEN-IKYAYEGGN--YHWVIT 82 (249)
T ss_pred CCceeEEeccCceEEEeecCccchhHHHHHHHHHhccccc-cceeeeCCc--eEEEEE
Confidence 6789999999877666655555566777888888876555 355555555 555543
No 115
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=30.49 E-value=1.2e+02 Score=18.66 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=5.0
Q ss_pred HHhhHHHHHHHH
Q 028846 171 LQNMKIKLIVLG 182 (203)
Q Consensus 171 ~~~~k~~iii~~ 182 (203)
|...++.-++++
T Consensus 11 y~tLrigGLi~A 22 (50)
T PF02038_consen 11 YETLRIGGLIFA 22 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHhhccchHHH
Confidence 344444444333
No 116
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=30.40 E-value=80 Score=27.74 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=9.7
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 028846 168 KMWLQNMKIKLIVLGILI 185 (203)
Q Consensus 168 ~~~~~~~k~~iii~~iv~ 185 (203)
+.+|++.+++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~ 51 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFA 51 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666665555444333
No 117
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=30.07 E-value=92 Score=17.47 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=7.6
Q ss_pred HHHHhhHHHHHHHHHH
Q 028846 169 MWLQNMKIKLIVLGIL 184 (203)
Q Consensus 169 ~~~~~~k~~iii~~iv 184 (203)
.|.+-.+|.-++.+++
T Consensus 3 ~~~~~H~W~Gl~~g~~ 18 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLL 18 (37)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555544433
No 118
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=30.04 E-value=79 Score=22.34 Aligned_cols=15 Identities=7% Similarity=0.186 Sum_probs=9.0
Q ss_pred HHHHHhhHHHHHHHH
Q 028846 168 KMWLQNMKIKLIVLG 182 (203)
Q Consensus 168 ~~~~~~~k~~iii~~ 182 (203)
++.|+++++.+++++
T Consensus 2 ~~~~~~~~~~ii~~~ 16 (103)
T PRK14125 2 KLKESKIHVSIFFVL 16 (103)
T ss_pred chHHHHHHHHHHHHH
Confidence 466777776664443
No 119
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=30.03 E-value=50 Score=25.08 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 028846 79 MAFLERVKDEF 89 (203)
Q Consensus 79 f~fL~~i~~~f 89 (203)
..|+..+-+..
T Consensus 29 R~lIShVirtL 39 (154)
T PF14914_consen 29 RRLISHVIRTL 39 (154)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 120
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=29.74 E-value=1e+02 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028846 162 GTKMRRKMWLQNMKIKLIVLGILIALI 188 (203)
Q Consensus 162 a~~l~~~~~~~~~k~~iii~~iv~~~~ 188 (203)
+.+.+--.||..|.+++++++.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLG 235 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555689999998888776554433
No 121
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=29.46 E-value=38 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHH--H---HHHHHhcc--CCcc
Q 028846 175 KIKLIVLGILIALI--L---IIVLSVCH--GFNC 201 (203)
Q Consensus 175 k~~iii~~iv~~~~--~---ii~~~~C~--gf~C 201 (203)
++++++.++++++. + ++|.++|| ||+|
T Consensus 35 W~~FL~~Gi~~~~~Sl~~~~~~~S~llgv~g~s~ 68 (94)
T PF14898_consen 35 WPIFLLAGIACIIASLFVSNVIWSALLGVLGFSC 68 (94)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 34555554444433 1 35566776 6665
No 122
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.43 E-value=4.3e+02 Score=23.96 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=26.2
Q ss_pred eeEEEeCCeEEEEEEeCCEEEEEEecCCCCcch
Q 028846 45 KFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI 77 (203)
Q Consensus 45 k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~ 77 (203)
...++.+.+-|-|-.-|.+-++.||.+.+.--.
T Consensus 46 hT~vEt~~VRYVYqP~d~lY~vLITtk~SNIle 78 (512)
T KOG2635|consen 46 HTFVETDSVRYVYQPLDNLYIVLITTKQSNILE 78 (512)
T ss_pred ccEEecccEEEEEEecccEEEEEEeccccchhh
Confidence 345677888888888899999999999887543
No 123
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=29.07 E-value=2e+02 Score=20.07 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=4.7
Q ss_pred HhhHHHHHHH
Q 028846 172 QNMKIKLIVL 181 (203)
Q Consensus 172 ~~~k~~iii~ 181 (203)
+.+|+|++..
T Consensus 70 r~~KmwilGl 79 (98)
T PF11166_consen 70 RDIKMWILGL 79 (98)
T ss_pred HHHHHHHHHH
Confidence 3445555433
No 124
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=28.64 E-value=1.6e+02 Score=19.96 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=12.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 028846 166 RRKMWLQNMKIKLIVLGILIA 186 (203)
Q Consensus 166 ~~~~~~~~~k~~iii~~iv~~ 186 (203)
++..|.+|.+++.++.++=.+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~v 23 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFV 23 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 355677888877665554333
No 125
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.43 E-value=3.2e+02 Score=22.13 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=8.2
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 028846 167 RKMWLQNMKIKLIVLGILI 185 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~iv~ 185 (203)
|++...++-.++|+++.++
T Consensus 191 RR~~~nk~~~~aii~~l~~ 209 (220)
T KOG1666|consen 191 RRLIRNKFTLTAIIALLVL 209 (220)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 126
>COG4499 Predicted membrane protein [Function unknown]
Probab=28.13 E-value=85 Score=27.78 Aligned_cols=62 Identities=10% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCC-EEEEEEe--cCCCCcchHHHHHHHHHHHHHh
Q 028846 30 SIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNG-YTYCVVA--DESSGRQIPMAFLERVKDEFVS 91 (203)
Q Consensus 30 ~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~~~-~~~~~it--d~~~~~~~af~fL~~i~~~f~~ 91 (203)
.+-..++++.||. +...+.+.|.+.+||-+-+. -.|--+. +++---|+|..-+..+.+.-.+
T Consensus 39 ~~~~~lld~~~~f~~~eit~~~Ds~vIsy~i~~~~~~F~~~k~~~k~~Klr~a~~~I~~l~e~~~t 104 (434)
T COG4499 39 ALLAELLDKSPPFIVAEITEDNDSFVISYPIPEAAKSFASAKRKEKTRKLRLALQNIATLSELNNT 104 (434)
T ss_pred HHHHHHhccCCCccceeecccCceeEEEecCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556778887765 33344556777777754322 1222222 2222234455555555554333
No 127
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=28.08 E-value=1.1e+02 Score=20.87 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 028846 173 NMKIKLIVLGILIALILII 191 (203)
Q Consensus 173 ~~k~~iii~~iv~~~~~ii 191 (203)
+.|-.+|+.+++++++.+|
T Consensus 32 ~lKrlliivvVvVlvVvvi 50 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVI 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHH
Confidence 3343344444343333333
No 128
>PLN03223 Polycystin cation channel protein; Provisional
Probab=27.67 E-value=1.2e+02 Score=31.44 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhH
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 153 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~ 153 (203)
-+.|.+.++.+-+++.-+.++-.++++|++++.++++|-.+|.+
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 33666667777788888888888899999988888887766654
No 129
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=27.40 E-value=52 Score=26.53 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.7
Q ss_pred HHHHhh
Q 028846 156 QDFRST 161 (203)
Q Consensus 156 ~~f~~~ 161 (203)
..|++.
T Consensus 114 ~~~kk~ 119 (227)
T PF05399_consen 114 EIFKKE 119 (227)
T ss_pred cccchh
Confidence 344444
No 130
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=27.30 E-value=1.1e+02 Score=16.60 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=8.1
Q ss_pred HHHHHHhhHHHHHHHH
Q 028846 167 RKMWLQNMKIKLIVLG 182 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~ 182 (203)
|+.|++-.++.-++.+
T Consensus 2 r~~~~~~H~~~g~~~~ 17 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAA 17 (34)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455555555554444
No 131
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=27.20 E-value=2.5e+02 Score=20.49 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=12.0
Q ss_pred HhhHHHHHHHHHHHhhHHHHHH
Q 028846 159 RSTGTKMRRKMWLQNMKIKLIV 180 (203)
Q Consensus 159 ~~~a~~l~~~~~~~~~k~~iii 180 (203)
.++-+.+++++++=+.-+....
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~ 70 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLAT 70 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666555544443
No 132
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.37 E-value=1.1e+02 Score=18.73 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=7.0
Q ss_pred HHHHhhHHHHH
Q 028846 169 MWLQNMKIKLI 179 (203)
Q Consensus 169 ~~~~~~k~~ii 179 (203)
-||++++..++
T Consensus 2 e~~~~~~~~ii 12 (51)
T PF10031_consen 2 EFWKNHRGKII 12 (51)
T ss_pred hHHHHCcchHH
Confidence 47788875444
No 133
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=26.30 E-value=3e+02 Score=21.07 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhh
Q 028846 162 GTKMRRKMWLQNM 174 (203)
Q Consensus 162 a~~l~~~~~~~~~ 174 (203)
..+++.-.-|+.=
T Consensus 82 gERl~allsWrdP 94 (156)
T PF08372_consen 82 GERLQALLSWRDP 94 (156)
T ss_pred HHHHHHhhccCCc
Confidence 4455555555433
No 134
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=26.21 E-value=1.5e+02 Score=20.33 Aligned_cols=13 Identities=0% Similarity=0.371 Sum_probs=7.7
Q ss_pred HHHHHHhhHHHHH
Q 028846 167 RKMWLQNMKIKLI 179 (203)
Q Consensus 167 ~~~~~~~~k~~ii 179 (203)
++...|.+-+++.
T Consensus 29 N~sfirdFvLVic 41 (84)
T PF06143_consen 29 NRSFIRDFVLVIC 41 (84)
T ss_pred ChHHHHHHHHHHH
Confidence 4566677766443
No 135
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=26.19 E-value=3.9e+02 Score=22.34 Aligned_cols=18 Identities=0% Similarity=-0.156 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 028846 163 TKMRRKMWLQNMKIKLIV 180 (203)
Q Consensus 163 ~~l~~~~~~~~~k~~iii 180 (203)
.+.++.-||.+.--|++.
T Consensus 50 eeaqK~Gi~~kIf~wi~~ 67 (306)
T PF04888_consen 50 EEAQKAGIFSKIFGWIGT 67 (306)
T ss_pred HHHHhcChHHHHHHHHHH
Confidence 344444455555444433
No 136
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.19 E-value=3.5e+02 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.178 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 028846 175 KIKLIVLGILIALI 188 (203)
Q Consensus 175 k~~iii~~iv~~~~ 188 (203)
|+++++++++|+++
T Consensus 191 k~iF~~G~i~~~v~ 204 (213)
T KOG3251|consen 191 KIIFYGGVILTLVI 204 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 137
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=25.82 E-value=40 Score=25.70 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=10.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 028846 170 WLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 170 ~~~~~k~~iii~~iv~~~~~ii 191 (203)
=.|+-|.-=|++++++++..+|
T Consensus 126 e~kr~K~Cki~~Li~~~vc~~i 147 (159)
T PF06789_consen 126 ELKRSKVCKIFALIVLAVCAVI 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe
Confidence 4456565555444443333333
No 138
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=25.77 E-value=47 Score=19.99 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=12.7
Q ss_pred HhhHHHHHHH-HHHHHHHHHHHH-Hhc
Q 028846 172 QNMKIKLIVL-GILIALILIIVL-SVC 196 (203)
Q Consensus 172 ~~~k~~iii~-~iv~~~~~ii~~-~~C 196 (203)
|+++|+++++ +++|++++...+ +.|
T Consensus 2 kk~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 4556555544 445555554333 566
No 139
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=25.76 E-value=1.1e+02 Score=26.37 Aligned_cols=18 Identities=6% Similarity=-0.088 Sum_probs=9.2
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 028846 167 RKMWLQNMKIKLIVLGIL 184 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~iv 184 (203)
....|++.++++++.++.
T Consensus 24 ~~~L~r~k~~Ii~~~~~~ 41 (325)
T PRK15471 24 LVQLWRGKMTIIISVIVA 41 (325)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 345666665555444433
No 140
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.50 E-value=2.8e+02 Score=20.65 Aligned_cols=51 Identities=16% Similarity=0.334 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHh-hhhhHHHHhhhhhhhHhHHHHHh
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDR-GEKIELLVDKTENLHQQAQDFRS 160 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~R-ge~l~~l~~ks~~L~~~s~~f~~ 160 (203)
+.+|..++.+++++...|.+.|+.+-++ ...+..+..+.+.|...-..|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999999999999888877644 44566666666666666555544
No 141
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=25.31 E-value=1.2e+02 Score=26.55 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=19.7
Q ss_pred HHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHH
Q 028846 144 LVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLI 179 (203)
Q Consensus 144 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ii 179 (203)
..+|+.+.--.+++|-.+-+.-+|-+|-|.+++-++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 106 VIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred HHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 334444444444556555555566667666666554
No 142
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=25.28 E-value=1.3e+02 Score=19.93 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhcCCC--CCCeeEEEeCC-eEEEEE--EeCCEEEEEEecCCC
Q 028846 25 SGNFNSIAYQCLQKLPA--SNNKFTYNCDA-HTFNYL--VDNGYTYCVVADESS 73 (203)
Q Consensus 25 ~~~~~~ia~~il~ki~~--~~~k~~~~~~~-~~~~~l--~~~~~~~~~itd~~~ 73 (203)
-.+|+.+...+-+++.+ +.-+..++.++ ....-+ .++|-.|+|...+.+
T Consensus 25 ~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 25 FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 46899998888888874 55567788777 544432 257899999876654
No 143
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=24.84 E-value=77 Score=26.43 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHhc
Q 028846 162 GTKMRRKMWLQNMKIKLIVLGILIAL-ILIIVLSVC 196 (203)
Q Consensus 162 a~~l~~~~~~~~~k~~iii~~iv~~~-~~ii~~~~C 196 (203)
-+.+---.||--+--|||++++|+++ ++..=++.|
T Consensus 400 ikevtgtswwmvmihyiivgliviv~vv~glklwgc 435 (436)
T PF13044_consen 400 IKEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLWGC 435 (436)
T ss_pred hhhccCcchHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 34455556887777777777655443 333334444
No 144
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=24.79 E-value=1e+02 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 028846 163 TKMRRKMWLQNMKIKLIVLGILI 185 (203)
Q Consensus 163 ~~l~~~~~~~~~k~~iii~~iv~ 185 (203)
++.-.++|.+.+|.+.+++++++
T Consensus 23 ~~~~~~~~~k~~r~~Al~alil~ 45 (218)
T PF10039_consen 23 KKGVFRMWRKYKRAIALAALILF 45 (218)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 34334455555555555444443
No 145
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=24.29 E-value=95 Score=29.52 Aligned_cols=28 Identities=14% Similarity=0.604 Sum_probs=20.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 028846 169 MWLQNMKIKLIVLGILIALILIIVLSVC 196 (203)
Q Consensus 169 ~~~~~~k~~iii~~iv~~~~~ii~~~~C 196 (203)
.|..--+|...|++++++++.++|+.+|
T Consensus 677 ~w~~~~w~~v~i~gi~~i~~m~~fik~~ 704 (764)
T KOG3658|consen 677 EWIVLNWLAVNIVGIVLIVLMAFFIKIC 704 (764)
T ss_pred HHHHhhhHHhHhHHHHHHHHHHHhhhhe
Confidence 4666666666677777777788888887
No 146
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.28 E-value=1.7e+02 Score=17.40 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028846 175 KIKLIVLGILIALILIIV 192 (203)
Q Consensus 175 k~~iii~~iv~~~~~ii~ 192 (203)
+.+.++..+++++.+++|
T Consensus 11 ~~~~~v~~~~~F~gi~~w 28 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIW 28 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 147
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.05 E-value=1.5e+02 Score=20.16 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=18.1
Q ss_pred hHHHHhhhhhhhHhHHHHHhhHHHHHHHH
Q 028846 141 IELLVDKTENLHQQAQDFRSTGTKMRRKM 169 (203)
Q Consensus 141 l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 169 (203)
|+.|++|.+.|...-..+-.+.|+.|..+
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777766666666666655443
No 148
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=24.04 E-value=1e+02 Score=21.19 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=16.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028846 167 RKMWLQNMKIKLIVLGILIALILIIVL 193 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~iv~~~~~ii~~ 193 (203)
.|.=|..+...+++++++ ++++||+
T Consensus 56 gK~~W~~fg~~~vVGvvL--lv~viwL 80 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGVVL--LVFVIWL 80 (87)
T ss_pred CcccHHHhhhHHHHHHHH--HHHHHHH
Confidence 445567787777766644 4566765
No 149
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=23.93 E-value=98 Score=21.71 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=18.7
Q ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028846 156 QDFRSTGTKMRRKMWLQNMKIKLIVLGILIA 186 (203)
Q Consensus 156 ~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~ 186 (203)
.+|-+.+-.....-.|||+-+.+...++.++
T Consensus 34 ~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~ 64 (103)
T PF06422_consen 34 DDYLEESYGYSYSHRWRNFGILIAFWIFFIV 64 (103)
T ss_pred HHHHhhhccccccchhhhHHHHHHHHHHHHH
Confidence 3455555556666778888766655444333
No 150
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=23.91 E-value=4.7e+02 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHH
Q 028846 113 LAKVKAQVSEVKGVMMENIEKVLD 136 (203)
Q Consensus 113 l~~~~~~~~~v~~im~~ni~~~l~ 136 (203)
.+-++.++.++++-|.+..+..++
T Consensus 129 v~ti~~qv~~~~~~l~~~~~~~l~ 152 (526)
T KOG4433|consen 129 VSTIDAQVSDTAEGLNNTAEQLLE 152 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666655554444443
No 151
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=23.79 E-value=2.1e+02 Score=18.51 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=15.8
Q ss_pred HHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 158 FRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 158 f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
|-+-|+|=-|.-.-+--|...+.++++-++.|+|-
T Consensus 21 vl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~ 55 (65)
T COG2443 21 VLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIY 55 (65)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333334444444555554444444445544
No 152
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=23.51 E-value=1.5e+02 Score=16.56 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 028846 183 ILIALILIIVLS 194 (203)
Q Consensus 183 iv~~~~~ii~~~ 194 (203)
++.+++++.|..
T Consensus 14 iLt~~ILvFWfg 25 (34)
T PF08113_consen 14 ILTAFILVFWFG 25 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 153
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.47 E-value=2.4e+02 Score=18.90 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 028846 116 VKAQVSE 122 (203)
Q Consensus 116 ~~~~~~~ 122 (203)
+++++++
T Consensus 38 l~~~~~~ 44 (90)
T PF06103_consen 38 LQEQVDP 44 (90)
T ss_pred HHHhHHH
Confidence 3333333
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.75 E-value=4e+02 Score=21.28 Aligned_cols=7 Identities=14% Similarity=0.040 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 028846 177 KLIVLGI 183 (203)
Q Consensus 177 ~iii~~i 183 (203)
++..++|
T Consensus 174 f~~Gg~v 180 (206)
T PRK10884 174 FMYGGGV 180 (206)
T ss_pred HHHchHH
Confidence 3333333
No 155
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.50 E-value=2.9e+02 Score=23.18 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 156 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~ 156 (203)
.|+++.+-+..+|+.-.+--.++=...+.|+.+.++++.+...-.
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~ 263 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVD 263 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHH
Confidence 666666666677666555555666677888999999888876543
No 156
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=22.37 E-value=5.2e+02 Score=22.43 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.9
Q ss_pred HHhhhhhHH
Q 028846 135 LDRGEKIEL 143 (203)
Q Consensus 135 l~Rge~l~~ 143 (203)
+.+|+.+.+
T Consensus 310 l~~G~sls~ 318 (399)
T TIGR02120 310 VREGGSLSR 318 (399)
T ss_pred HHCCccHHH
Confidence 344444443
No 157
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=22.01 E-value=2e+02 Score=20.20 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=26.6
Q ss_pred hhhHHHHHHhhhhhHHHHhh--hhhhhHhHHHHHhhHHHHHH
Q 028846 128 MENIEKVLDRGEKIELLVDK--TENLHQQAQDFRSTGTKMRR 167 (203)
Q Consensus 128 ~~ni~~~l~Rge~l~~l~~k--s~~L~~~s~~f~~~a~~l~~ 167 (203)
...+..+|.++..|+.+..- ++.|+...+.....++.++.
T Consensus 4 ~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 4 AGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 34566667777777777765 66677776666666666665
No 158
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=21.96 E-value=1.8e+02 Score=23.41 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=11.5
Q ss_pred CeeEEEeCCeEEE
Q 028846 44 NKFTYNCDAHTFN 56 (203)
Q Consensus 44 ~k~~~~~~~~~~~ 56 (203)
++.+++.+||.||
T Consensus 182 ~kVvFDRgGy~YH 194 (211)
T PTZ00032 182 SKVRFDRAHYKYA 194 (211)
T ss_pred CEEEEeCCCCeeh
Confidence 6788999999998
No 159
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=21.60 E-value=85 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCCC
Q 028846 28 FNSIAYQCLQKLPAS 42 (203)
Q Consensus 28 ~~~ia~~il~ki~~~ 42 (203)
+.......|+++..+
T Consensus 11 Y~~f~~ryL~kL~~~ 25 (215)
T PHA02947 11 YNLFIERYLQNLSLY 25 (215)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456667778887654
No 160
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=21.48 E-value=3.9e+02 Score=21.72 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=3.4
Q ss_pred hHHHHHh
Q 028846 154 QAQDFRS 160 (203)
Q Consensus 154 ~s~~f~~ 160 (203)
.+..|..
T Consensus 21 ~a~~~E~ 27 (229)
T PRK13865 21 EVEAFQT 27 (229)
T ss_pred HHHHHHH
Confidence 3445554
No 161
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.24 E-value=4e+02 Score=20.74 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=14.6
Q ss_pred hhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHH
Q 028846 127 MMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 159 (203)
Q Consensus 127 m~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~ 159 (203)
+.+.|+.+=+-..+...|.+|+..|..+-..|.
T Consensus 132 L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 132 LEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333334444444455555554444443
No 162
>PHA02690 hypothetical protein; Provisional
Probab=21.06 E-value=2.8e+02 Score=18.77 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 161 TGTKMRRKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 161 ~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
.++-+-|++|.=-+-+.+.++.+.++++=.+|
T Consensus 33 gs~plLR~~~RlLfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 33 GSTPLLRQMWRLLFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667776555555555554444444444
No 163
>PRK09697 protein secretion protein GspB; Provisional
Probab=20.96 E-value=82 Score=22.77 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=16.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 028846 167 RKMWLQNMKIKLIVLGILIALILIIVLSVC 196 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~iv~~~~~ii~~~~C 196 (203)
.-||-++..-.|+ .++++.++..|.+.|
T Consensus 17 ~~~~~~~~~~TI~--~Vi~L~~~~L~~AG~ 44 (139)
T PRK09697 17 PGIFSRQKHSTII--YVICLLLICLWFAGM 44 (139)
T ss_pred cchhhhhhccchH--HHHHHHHHHHHHhcc
Confidence 3466655554443 445555666777666
No 164
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.93 E-value=38 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 028846 178 LIVLGILIALILII 191 (203)
Q Consensus 178 iii~~iv~~~~~ii 191 (203)
++++++++++++.|
T Consensus 8 iilg~~ll~~Ligi 21 (49)
T PF05624_consen 8 IILGALLLLLLIGI 21 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443334333
No 165
>PF15106 TMEM156: TMEM156 protein family
Probab=20.63 E-value=61 Score=26.13 Aligned_cols=26 Identities=23% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 167 RKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 167 ~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
+-++--+..||+++.+|.++++++|+
T Consensus 169 n~~CsmKITWYvLVllVfiflii~iI 194 (226)
T PF15106_consen 169 NSTCSMKITWYVLVLLVFIFLIILII 194 (226)
T ss_pred CceeehhhHHHHHHHHHHHHHHHHHH
Confidence 34454455566665554444443333
No 166
>COG3771 Predicted membrane protein [Function unknown]
Probab=20.59 E-value=74 Score=21.94 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhccCC
Q 028846 185 IALILIIVLSVCHGF 199 (203)
Q Consensus 185 ~~~~~ii~~~~C~gf 199 (203)
..+.+++-+.+||+|
T Consensus 49 F~~G~~lgwli~g~f 63 (97)
T COG3771 49 FAAGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566667789877
No 167
>PHA01811 hypothetical protein
Probab=20.13 E-value=1.3e+02 Score=19.43 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.5
Q ss_pred CeeEEEeCCeEEEEEEeC
Q 028846 44 NKFTYNCDAHTFNYLVDN 61 (203)
Q Consensus 44 ~k~~~~~~~~~~~~l~~~ 61 (203)
...+....||.+||+-++
T Consensus 5 divtlrvkgyi~hyldd~ 22 (78)
T PHA01811 5 DIVTLRVKGYILHYLDDD 22 (78)
T ss_pred cEEEEEEeeEEEEEEcCc
Confidence 357788899999998764
Done!