Query 028846
Match_columns 203
No_of_seqs 153 out of 990
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 1.1E-53 3.9E-58 336.9 7.1 172 3-175 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 6.5E-45 2.2E-49 288.7 13.2 167 5-173 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 3.1E-33 1.1E-37 221.3 10.0 163 4-167 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 1E-30 3.5E-35 202.4 16.2 116 3-119 53-169 (173)
5 3hd7_A Vesicle-associated memb 100.0 4.8E-30 1.6E-34 178.6 11.6 87 111-197 5-91 (91)
6 2kog_A Vesicle-associated memb 99.9 4.5E-29 1.6E-33 181.4 2.4 89 109-197 31-119 (119)
7 2vx8_A Nucleoporin-like protei 99.9 8.5E-27 2.9E-31 179.8 14.2 109 3-112 43-151 (169)
8 1sfc_A VAMP 2, protein (synapt 99.9 1.2E-22 3.9E-27 142.4 8.1 69 109-177 28-96 (96)
9 2nps_A VAMP-4, vesicle-associa 99.9 6.8E-23 2.3E-27 137.2 4.6 67 111-177 8-74 (74)
10 1l4a_A Synaptobrevin; snare, s 99.9 7.4E-23 2.5E-27 139.0 3.4 67 110-176 14-80 (80)
11 3bw6_A Synaptobrevin homolog Y 99.8 2.4E-20 8.1E-25 140.5 12.1 97 3-100 4-116 (144)
12 3b5n_A Synaptobrevin homolog 1 99.8 5.5E-20 1.9E-24 118.5 7.1 59 112-170 3-61 (61)
13 1n7s_A Vesicle-associated memb 99.8 1.5E-19 5E-24 117.3 7.1 60 111-170 4-63 (63)
14 1gl2_A Endobrevin; membrane pr 99.7 1.9E-17 6.6E-22 107.8 5.7 59 109-167 7-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.6 3.7E-16 1.3E-20 100.5 6.1 58 112-169 5-62 (63)
16 3fie_C Fragment of vesicle-ass 98.0 2.2E-08 7.4E-13 57.6 -6.1 28 112-139 10-37 (38)
17 3zym_A Phosphatidylinositol-bi 97.7 1.2E-05 4.2E-10 67.2 2.0 30 112-141 281-310 (310)
18 2fh5_A Signal recognition part 97.4 0.00058 2E-08 52.6 7.8 105 6-112 12-128 (185)
19 3hd7_B Syntaxin-1A; membrane p 97.3 0.0057 2E-07 43.1 11.7 45 110-154 20-64 (109)
20 3hd7_A Vesicle-associated memb 94.9 0.49 1.7E-05 31.9 10.2 50 112-161 13-62 (91)
21 2vgl_S AP-2 complex subunit si 94.4 0.76 2.6E-05 33.3 11.1 72 46-122 48-119 (142)
22 1w63_Q Adapter-related protein 94.2 1.2 4.2E-05 32.9 12.8 71 46-121 48-118 (158)
23 3tjz_C Coatomer subunit zeta-1 92.2 2.6 9E-05 31.0 12.5 113 5-122 12-130 (153)
24 3hd7_B Syntaxin-1A; membrane p 91.5 2.5 8.5E-05 29.3 10.9 7 82-88 13-19 (109)
25 1w63_M Adaptor-related protein 89.8 3 0.0001 35.7 10.7 112 4-120 1-117 (423)
26 2vgl_M AP-2 complex subunit MU 89.3 9.1 0.00031 32.8 13.4 70 46-120 46-115 (435)
27 2kog_A Vesicle-associated memb 85.8 0.27 9.2E-06 34.9 1.3 51 112-162 41-91 (119)
28 1jth_B Syntaxin 1A; coiled-coi 81.9 6.7 0.00023 25.1 6.8 44 111-154 10-53 (77)
29 2fz0_A R-snare NYV1P, V-snare 81.1 1.8 6.3E-05 31.2 4.0 60 28-87 46-114 (149)
30 1rh5_B Preprotein translocase 80.6 1.1 3.8E-05 29.0 2.5 52 141-192 5-56 (74)
31 2ww9_B Protein transport prote 79.2 1.5 5E-05 28.8 2.8 45 148-192 25-69 (80)
32 1t3j_A Mitofusin 1; coiled coi 70.5 14 0.00049 24.9 6.0 45 112-156 37-81 (96)
33 2wwb_B SEC61gamma, protein tra 68.7 0.86 2.9E-05 29.0 -0.3 48 144-191 7-54 (68)
34 2nps_B Syntaxin 13, vesicle-as 66.7 21 0.00071 22.3 7.0 43 112-154 7-49 (71)
35 1n7s_A Vesicle-associated memb 60.5 26 0.00088 21.3 7.3 52 119-170 5-56 (63)
36 3mp7_B Preprotein translocase 59.9 3.8 0.00013 25.4 1.4 49 144-192 4-52 (61)
37 1txp_A HnRNP C, heterogeneous 58.5 6.8 0.00023 20.0 2.0 24 115-142 3-26 (28)
38 1sfc_A VAMP 2, protein (synapt 57.5 40 0.0014 22.5 8.1 50 112-161 38-87 (96)
39 3b5n_A Synaptobrevin homolog 1 57.2 30 0.001 20.9 7.1 51 120-170 4-54 (61)
40 3b5n_B Protein SSO1; snare com 56.5 33 0.0011 21.3 7.6 45 111-155 10-54 (69)
41 3fym_A Putative uncharacterize 56.4 2.9 9.8E-05 29.6 0.5 24 170-193 101-124 (130)
42 2k1a_A Integrin alpha-IIB; sin 52.7 25 0.00084 19.9 4.0 19 182-200 20-38 (42)
43 2l8s_A Integrin alpha-1; trans 51.9 13 0.00043 22.4 2.7 19 182-200 19-37 (54)
44 2knc_A Integrin alpha-IIB; tra 51.8 12 0.00042 22.4 2.7 19 182-200 22-40 (54)
45 2j3t_C Trafficking protein par 51.0 27 0.00094 25.1 5.1 57 33-91 46-107 (145)
46 2zxe_G FXYD10, phospholemman-l 50.3 23 0.00079 22.6 3.9 8 195-202 39-46 (74)
47 1gl2_B Syntaxin 7; membrane pr 49.5 42 0.0015 20.5 6.7 45 111-155 9-53 (65)
48 1urq_A M-tomosyn isoform; tran 48.6 45 0.0015 20.5 6.4 49 112-160 12-60 (63)
49 3h3g_B Parathyroid hormone-rel 46.0 13 0.00046 18.3 1.8 13 162-174 4-16 (24)
50 3cue_C Transport protein parti 45.7 45 0.0015 24.4 5.6 57 33-91 52-113 (159)
51 1n7s_B Syntaxin 1A; neuronal s 44.8 52 0.0018 20.2 6.9 45 110-154 11-55 (68)
52 4a4y_A Protein MXIG; protein b 43.6 46 0.0016 22.7 4.9 44 4-59 84-127 (146)
53 2oxj_A Hybrid alpha/beta pepti 39.8 41 0.0014 18.0 3.2 14 141-154 3-16 (34)
54 3cue_A Transport protein parti 39.8 68 0.0023 24.9 6.0 46 46-91 120-188 (219)
55 1sfc_B Protein (syntaxin 1A), 37.4 80 0.0027 20.2 7.4 45 110-154 20-64 (83)
56 2ygg_A Sodium/hydrogen exchang 36.5 28 0.00096 22.0 2.7 23 117-139 6-28 (70)
57 3c3f_A Alpha/beta peptide with 33.8 57 0.0019 17.4 3.2 10 143-152 5-14 (34)
58 2nps_A VAMP-4, vesicle-associa 33.4 89 0.003 19.5 5.4 50 112-161 16-65 (74)
59 2j3t_D Trafficking protein par 33.3 1.7E+02 0.0057 22.6 10.2 58 33-92 119-180 (219)
60 1nhl_A Synaptosomal-associated 31.6 81 0.0028 18.5 5.6 39 116-154 5-43 (54)
61 3bo0_B Preprotein translocase 30.9 70 0.0024 19.4 4.0 18 175-192 37-54 (65)
62 1l4a_A Synaptobrevin; snare, s 30.4 97 0.0033 19.7 4.7 50 112-161 23-72 (80)
63 2p06_A Hypothetical protein AF 29.7 1.1E+02 0.0037 20.0 4.8 49 75-127 25-76 (114)
64 1pi7_A VPU protein, U ORF prot 28.6 58 0.002 17.7 2.8 11 178-188 7-17 (36)
65 2klu_A T-cell surface glycopro 28.4 13 0.00046 23.2 0.2 21 176-196 10-30 (70)
66 3b5n_C Protein transport prote 27.3 1.2E+02 0.004 19.0 6.1 48 119-166 20-67 (70)
67 3nmd_A CGMP dependent protein 27.1 1.2E+02 0.0042 19.1 4.9 42 120-161 21-62 (72)
68 1kd8_B GABH BLL, GCN4 acid bas 26.9 81 0.0028 17.0 3.8 9 143-151 5-13 (36)
69 3vmt_A Monofunctional glycosyl 26.4 35 0.0012 27.4 2.3 21 164-184 26-46 (263)
70 1dn1_B Syntaxin 1A, syntaxin b 25.3 51 0.0017 26.2 3.2 41 112-152 201-241 (267)
71 2j3w_A Sedlin, trafficking pro 24.2 1.9E+02 0.0065 20.3 7.6 48 45-93 64-112 (142)
72 3t97_C Nuclear pore glycoprote 23.9 93 0.0032 19.1 3.5 24 134-157 7-30 (64)
73 2jp3_A FXYD domain-containing 22.6 99 0.0034 19.2 3.4 8 173-180 16-23 (67)
74 1gl2_A Endobrevin; membrane pr 21.3 1.5E+02 0.005 18.0 6.0 49 120-168 11-59 (65)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=1.1e-53 Score=336.92 Aligned_cols=172 Identities=38% Similarity=0.664 Sum_probs=135.3
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 028846 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (203)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 82 (203)
.|+|+|||||||++|||||+..+|||..+++++|+++|+.+++.++++|+|.|||+.++|++|+|+||++||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 47899999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCcchHHhh-----------------HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHH
Q 028846 83 ERVKDEFVSKYGGGKAATAPANGLNKEFG-----------------KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 145 (203)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~l~~~f~-----------------kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~ 145 (203)
++|+++|.+.|+ ..+.++.|++++.+|+ ++.+++++++||++||.+||+++|+|||+||.|+
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~ 159 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLI 159 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCE
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999995 4556667777766664 7888999999999999999999999999999999
Q ss_pred hhhhhhhHhHHHHHhhHHHHHHHHHHHhhH
Q 028846 146 DKTENLHQQAQDFRSTGTKMRRKMWLQNMK 175 (203)
Q Consensus 146 ~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k 175 (203)
+||++|+.+|..|+++|++++|+|||+|+|
T Consensus 160 ~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 160 DKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp ETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=6.5e-45 Score=288.69 Aligned_cols=167 Identities=27% Similarity=0.475 Sum_probs=100.5
Q ss_pred ceEEEEEEeC--CeEEEeecCCC---CC----HHHHHHHHHhcCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 028846 5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (203)
Q Consensus 5 ~i~Ya~Iar~--~~iLae~~~~~---~~----~~~ia~~il~ki~~-~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~ 74 (203)
||+|+||||+ ++|||+|++.+ |+ +..+++.+++++|+ .+++.+++.++|.|||+.++|++|+||||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 89999998643 44 88999999999998 578999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCC-CCCCcchHHhh-----------------HHHHHHHHHhhhhhhhhhhHHHHHH
Q 028846 75 RQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFG-----------------KLAKVKAQVSEVKGVMMENIEKVLD 136 (203)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~l~~~f~-----------------kl~~~~~~~~~v~~im~~ni~~~l~ 136 (203)
+++||.||++|+++|...|+. .+.+ +.|++++ +|+ +|.+++++++||++||.+||+++|+
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~ 159 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQ 159 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHhccc-hhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999963 4443 4577763 443 8899999999999999999999999
Q ss_pred hhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHh
Q 028846 137 RGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 173 (203)
Q Consensus 137 Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~ 173 (203)
|||+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 160 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 160 RGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp -------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-33 Score=221.33 Aligned_cols=163 Identities=22% Similarity=0.296 Sum_probs=133.4
Q ss_pred cceEEEEEEeC--C--eEEEeecCCC----------CCHHH-HHHHHHhcCCCCCCeeEEEeCCeEEE-EEEeCCEEEEE
Q 028846 4 KSLIYAFVARG--N--VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYCV 67 (203)
Q Consensus 4 ~~i~Ya~Iar~--~--~iLae~~~~~----------~~~~~-ia~~il~ki~~~~~k~~~~~~~~~~~-~l~~~~~~~~~ 67 (203)
|.|++..|.+. + .+|+...+.+ ++|.. +++.+++++||+ +|.+++.|+|.|| |+.++|++|+|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEEE
Confidence 34777777773 2 4565433221 34443 567999999885 6999999999999 89999999999
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhcCCCCCCC--CCCCcc------hHHh------hHHHHHHHHHhhhhhhhhhhHHH
Q 028846 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAAT--APANGL------NKEF------GKLAKVKAQVSEVKGVMMENIEK 133 (203)
Q Consensus 68 itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~--~~~~~l------~~~f------~kl~~~~~~~~~v~~im~~ni~~ 133 (203)
+||++||+++||.||++|+++|.+.|++..+.. ..++++ ...| +++.+++++++||++||.+||++
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~ 160 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMES 160 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCCCTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGG
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccccccHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997545532 234443 1233 28999999999999999999999
Q ss_pred HHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHH
Q 028846 134 VLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 167 (203)
Q Consensus 134 ~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 167 (203)
+|+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 161 vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 161 LLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp TSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999985
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=202.37 Aligned_cols=116 Identities=34% Similarity=0.573 Sum_probs=107.1
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 028846 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (203)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 82 (203)
+|+|+|||||||++|||||+..+|||+.+++++|+++|+.++|.+++.++|.|||++++|++|+||||++||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 67899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCcchHHhhH-HHHHHHH
Q 028846 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGK-LAKVKAQ 119 (203)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~l~~~f~k-l~~~~~~ 119 (203)
++|+++|.+.|+ .++.++.+|+|+++|++ |.+..+.
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~ 169 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKH 169 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHH
Confidence 999999999995 57788899999999984 4444433
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.97 E-value=4.8e-30 Score=178.56 Aligned_cols=87 Identities=32% Similarity=0.588 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 190 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~i 190 (203)
+++.+++++++||+++|.+|++++++|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++++++
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 028846 191 IVLSVCH 197 (203)
Q Consensus 191 i~~~~C~ 197 (203)
|++++|.
T Consensus 85 i~~~~~~ 91 (91)
T 3hd7_A 85 IIVYFST 91 (91)
T ss_dssp HHHTTCC
T ss_pred HHHHHhC
Confidence 9999993
No 6
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.95 E-value=4.5e-29 Score=181.41 Aligned_cols=89 Identities=31% Similarity=0.564 Sum_probs=85.4
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028846 109 EFGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALI 188 (203)
Q Consensus 109 ~f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~ 188 (203)
+-+++.+++++++||+++|.+||+++++|||+||.|++||++|+.+|..|+++|++++++|||+|+|+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 028846 189 LIIVLSVCH 197 (203)
Q Consensus 189 ~ii~~~~C~ 197 (203)
++|++++|.
T Consensus 111 ~iIi~~~c~ 119 (119)
T 2kog_A 111 IIIIVYFST 119 (119)
T ss_dssp HHHHHHHHC
T ss_pred HHhhhheeC
Confidence 999999993
No 7
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.94 E-value=8.5e-27 Score=179.82 Aligned_cols=109 Identities=34% Similarity=0.597 Sum_probs=101.7
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 028846 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (203)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL 82 (203)
+|+|+|+||+||++||+||++..+||..+++.+++++++.++|.+++.|+|.|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 47899999999999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCcchHHhhH
Q 028846 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGK 112 (203)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~l~~~f~k 112 (203)
++|+++|.+.|+ ..+..+.+++|+++|+.
T Consensus 123 edI~~eF~~~y~-~~~~~a~pysf~~eF~~ 151 (169)
T 2vx8_A 123 NEVKKRFQTTYG-SRAQTALPYAMNSEFSS 151 (169)
T ss_dssp HHHHHHHHHHHT-TGGGTCCTTTTHHHHHH
T ss_pred HHHHHHHHHHhh-hhhhccCCcchhHHHHH
Confidence 999999999996 46666678899878884
No 8
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.88 E-value=1.2e-22 Score=142.36 Aligned_cols=69 Identities=35% Similarity=0.626 Sum_probs=64.1
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHH
Q 028846 109 EFGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIK 177 (203)
Q Consensus 109 ~f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ 177 (203)
+-++|.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++++|||+|+|++
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345999999999999999999999999999999999999999999999999999999999999999975
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.87 E-value=6.8e-23 Score=137.23 Aligned_cols=67 Identities=45% Similarity=0.742 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHH
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIK 177 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ 177 (203)
++|.+++.+|+||++||.+||+++|+|||+||.|+++|++|+.+|..|+++|++++++|||+++|++
T Consensus 8 d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 8 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp SSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999999999999999999999999999999999974
No 10
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.86 E-value=7.4e-23 Score=138.99 Aligned_cols=67 Identities=37% Similarity=0.628 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHH
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKI 176 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~ 176 (203)
-++|.+++.+++||++||.+||+++|+|||+||.|+++|++|+.+|..|+++|++++++|||+|+|+
T Consensus 14 ~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 14 SKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3599999999999999999999999999999999999999999999999999999999999999985
No 11
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.84 E-value=2.4e-20 Score=140.49 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=85.1
Q ss_pred CcceEEEEEEeC----CeEEEeecCCC----------CCH-HHHHHHHHhcCCCCCCeeEEEeCCeEEEEE-EeCCEEEE
Q 028846 3 QKSLIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYC 66 (203)
Q Consensus 3 ~~~i~Ya~Iar~----~~iLae~~~~~----------~~~-~~ia~~il~ki~~~~~k~~~~~~~~~~~~l-~~~~~~~~ 66 (203)
.|.|+|.+|+|+ .++|+++++.+ ++| ..+++++++|+|++ +|.+++.++|+|||+ .++|++|+
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEE
Confidence 466888889998 68999987765 455 77899999999986 699999999999999 78999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCC
Q 028846 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT 100 (203)
Q Consensus 67 ~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~ 100 (203)
|+||++||+++||.||++|+++|.++|+...+.+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~ 116 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWAD 116 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTT
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhh
Confidence 9999999999999999999999999996443655
No 12
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.81 E-value=5.5e-20 Score=118.51 Aligned_cols=59 Identities=36% Similarity=0.730 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 170 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 170 (203)
++.+++.+++||++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++++||
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 78999999999999999999999999999999999999999999999999999999998
No 13
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.79 E-value=1.5e-19 Score=117.32 Aligned_cols=60 Identities=37% Similarity=0.670 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHH
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 170 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 170 (203)
++|.+++.++++|++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++++||
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 479999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=1.9e-17 Score=107.82 Aligned_cols=59 Identities=32% Similarity=0.626 Sum_probs=52.5
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHH
Q 028846 109 EFGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 167 (203)
Q Consensus 109 ~f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 167 (203)
+-++|.+++.+|+||+.||.+||+++|+|||+|+.|++||++|+.+|..|+++|++|+|
T Consensus 7 ~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 7 GNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34589999999999999999999999999999999999999999999999999999885
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.63 E-value=3.7e-16 Score=100.53 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 169 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 169 (203)
++.+++.++++|+++|.+|++++++|||+|+.|++||++|..+|..|.+.|++|++++
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999864
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.04 E-value=2.2e-08 Score=57.60 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGE 139 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge 139 (203)
++.+++++++||++||.+||+++|+||+
T Consensus 10 ~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 10 RLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp SSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 6677899999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=97.68 E-value=1.2e-05 Score=67.17 Aligned_cols=30 Identities=33% Similarity=0.751 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKI 141 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l 141 (203)
.+.++|+|++||++||.+||+++++|||+|
T Consensus 281 ~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 281 RVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 567899999999999999999999999986
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.39 E-value=0.00058 Score=52.60 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=70.0
Q ss_pred eEEEEEEeCCeEEEeecCCCCC----HHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHH
Q 028846 6 LIYAFVARGNVVLAEYTEFSGN----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPM 79 (203)
Q Consensus 6 i~Ya~Iar~~~iLae~~~~~~~----~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~--~~~~~~itd~~~~~~~af 79 (203)
=+.+.+.+|+.||..|+..... ...+++.++-.=..+ ..++++|+|...+..+| +++|++|--.-.+-..+=
T Consensus 12 D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 12 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred eEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 3678899999999998543323 455555554432222 23688899999998876 799999988777777788
Q ss_pred HHHHHHHHHHHhhcCCC--CCCC----CCCCcchHHhhH
Q 028846 80 AFLERVKDEFVSKYGGG--KAAT----APANGLNKEFGK 112 (203)
Q Consensus 80 ~fL~~i~~~f~~~~~~~--~~~~----~~~~~l~~~f~k 112 (203)
.||+.++..|...|.+. .... ..+.++++.|++
T Consensus 90 ~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~ 128 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLR 128 (185)
T ss_dssp HHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHH
Confidence 89999999999998432 1011 123457777774
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.32 E-value=0.0057 Score=43.06 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
...+.++++.+.|+.+++.+=-..+-+.|+.+|.++...++-..+
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~ 64 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 347888999999999888777777889999999988776665544
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.86 E-value=0.49 Score=31.87 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 161 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 161 (203)
++++++.-+.+.-+-+.++-+++=+=.++-++|...|.....+|...++.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444455555555555666666777777777777766553
No 21
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=94.37 E-value=0.76 Score=33.28 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=53.2
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhhHHHHHHHHHhh
Q 028846 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGKLAKVKAQVSE 122 (203)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~kl~~~~~~~~~ 122 (203)
-.++.+++.|-|...+++.|+++++.+.+.-..+.||..+.+.+..-++ + .....+...|.++-.+-+|+=+
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~-~----v~E~~I~~Nf~~vy~lLDE~id 119 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH-N----VCELDLVFNFYKVYTVVDEMFL 119 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT-S----CCHHHHHHTHHHHHHHHHHHEE
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc-c----CCHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999898889999999999999999999999999888876663 1 2223344556666655555433
No 22
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.16 E-value=1.2 Score=32.85 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=53.1
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhhHHHHHHHHHh
Q 028846 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGKLAKVKAQVS 121 (203)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~kl~~~~~~~~ 121 (203)
-.++.+++.|-|...+++.|+++++.+.+.-..+.||..+.+.+..-++ + .....+...|.++-.+-+|+=
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~-~----v~E~~I~~Nf~~vy~lLDE~i 118 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG-S----VCELDIIFNFEKAYFILDEFL 118 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS-S----CCHHHHHHHHHHHHHHHHTTE
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc-c----CCHHHHHHhHHHHHHHHHHHH
Confidence 3567889999898889999999999999999999999998888876553 1 222344556666666555543
No 23
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=92.17 E-value=2.6 Score=30.98 Aligned_cols=113 Identities=11% Similarity=0.140 Sum_probs=72.5
Q ss_pred ceEEEEEEe--CCeEEEeecCCC-CCH---HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 028846 5 SLIYAFVAR--GNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (203)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~~~-~~~---~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~a 78 (203)
+|.+.+|-. |.++|+-|=... .+. ....+.+.+++...++ -....+++.+.|....++.|+++++.+.+.-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 566666664 457777653321 222 2223334444433332 467789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhhHHHHHHHHHhh
Q 028846 79 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGKLAKVKAQVSE 122 (203)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~kl~~~~~~~~~ 122 (203)
+.||..+.+.+..-+++ .. ....+...|+++-.+-+|+=+
T Consensus 91 le~L~~~ve~l~~yf~~-~v---~E~~I~~Nf~~vy~lLDE~id 130 (153)
T 3tjz_C 91 MTVLNCLFDSLSQMLRK-NV---EKRALLENMEGLFLAVDEIVD 130 (153)
T ss_dssp HHHHHHHHHHHHHHHTS-CC---CHHHHHHTHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHHHHHHHc
Confidence 99999999888776631 12 223344566666555555433
No 24
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=91.46 E-value=2.5 Score=29.27 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 028846 82 LERVKDE 88 (203)
Q Consensus 82 L~~i~~~ 88 (203)
|.+++++
T Consensus 13 l~~i~eR 19 (109)
T 3hd7_B 13 LSEIETR 19 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 25
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.75 E-value=3 Score=35.72 Aligned_cols=112 Identities=12% Similarity=0.148 Sum_probs=68.5
Q ss_pred cceEEEEEEe-CCeEE-Ee-ecC-CCCC-HHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 028846 4 KSLIYAFVAR-GNVVL-AE-YTE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (203)
Q Consensus 4 ~~i~Ya~Iar-~~~iL-ae-~~~-~~~~-~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~a 78 (203)
|||...+|.. .+.++ +- |.. ...+ .+..-+.++.+.......-.++.+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 4666666665 34554 43 332 1222 233334444332211122356788999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhhHHHHHHHHH
Q 028846 79 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGKLAKVKAQV 120 (203)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~kl~~~~~~~ 120 (203)
+.||..+.+.+..-++ . .....+...|.++..+-+|+
T Consensus 81 le~L~~~v~~l~~yf~--~---v~E~~I~~Nf~~vy~lLDE~ 117 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK--E---LEEESIRDNFVIIYELLDEL 117 (423)
T ss_dssp HHHHHHHHHHHHHHSS--C---CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--h---cCHHHHHHhHHHHHHHHHHH
Confidence 9999999888876662 1 22233445566665555444
No 26
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=89.28 E-value=9.1 Score=32.80 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=51.8
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhhHHHHHHHHH
Q 028846 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGKLAKVKAQV 120 (203)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~kl~~~~~~~ 120 (203)
-.++.+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++ . .....+...|.++..+-+|+
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~--~---v~E~~I~~Nf~~vy~lLDE~ 115 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG--K---ISEENIKNNFVLIYELLDEI 115 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS--S---CCHHHHHHTHHHHHHHHHHH
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh--c---cCHHHHHHhHHHHHHHHHHH
Confidence 3567889999998899999999999999999999999999888876663 1 22233445555555554444
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=85.78 E-value=0.27 Score=34.95 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTG 162 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a 162 (203)
++++++..+.+.-+-+.+.-+++-+=.++-+.|.+.|.....+|+..+++.
T Consensus 41 evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 41 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555555555555556666677778888888887776643
No 28
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=81.86 E-value=6.7 Score=25.13 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
..+.+++..+.|+.+++.+=-..+.+.|+.||.++...+.-..+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 36788999999999998877778889999999888766655433
No 29
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=81.08 E-value=1.8 Score=31.17 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHH-HHHHhcCCCC-CCeeEEE----eCCeEEEEEE---eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 028846 28 FNSIA-YQCLQKLPAS-NNKFTYN----CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (203)
Q Consensus 28 ~~~ia-~~il~ki~~~-~~k~~~~----~~~~~~~~l~---~~~~~~~~itd~~~~~~~af~fL~~i~~ 87 (203)
|..++ ..++.++-|- ..|.+-+ .|||-.+|.. +++.+|+|.|..+.|+-++...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 44443 4445665542 3344433 3899888876 3578999999999999999999999975
No 30
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=80.57 E-value=1.1 Score=28.96 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=31.5
Q ss_pred hHHHHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 141 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 141 l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
++.+.+...+.-.++.+|-+.+++=-|+-+.+..+...+.++++-++.|+|-
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666677777777777778888888877776666666555554
No 31
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=79.23 E-value=1.5 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=28.7
Q ss_pred hhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 148 TENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 148 s~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
..+.-.++.+|-+.+++=-|+-+++..+...+.++++-++.|+|-
T Consensus 25 ~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIk 69 (80)
T 2ww9_B 25 PVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIK 69 (80)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666677788888877777666666666643
No 32
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=70.50 E-value=14 Score=24.88 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHH
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 156 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~ 156 (203)
-...+..+++++++-|.+-|+.+-.+=..||.+..++..|.+.|.
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 446778889999999988888887777777776666666555444
No 33
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=68.71 E-value=0.86 Score=29.00 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028846 144 LVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 191 (203)
Q Consensus 144 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii 191 (203)
+.+...+.-.++.+|-+.++|=-|+-+++..|...+.++++-++.|+|
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFV 54 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666667777777777766666665555553
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=66.68 E-value=21 Score=22.33 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
.+.+++..+.++.+++.+=-.-+-+.|+.||.++...+.-..+
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 49 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5788999999999998877777889999999998776665544
No 35
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=60.50 E-value=26 Score=21.32 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHH
Q 028846 119 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 170 (203)
Q Consensus 119 ~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 170 (203)
.+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|.....+|...++..-
T Consensus 5 ~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~ 56 (63)
T 1n7s_A 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555556666666777777777766665543
No 36
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=59.90 E-value=3.8 Score=25.35 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=29.3
Q ss_pred HHhhhhhhhHhHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028846 144 LVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 192 (203)
Q Consensus 144 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~iv~~~~~ii~ 192 (203)
+.+...+.-.++..+-+.++|=.|+-+.+..|...+.++++-++.|+|-
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666676767666677777777777766666655555543
No 37
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=58.46 E-value=6.8 Score=20.04 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=16.1
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhhH
Q 028846 115 KVKAQVSEVKGVMMENIEKVLDRGEKIE 142 (203)
Q Consensus 115 ~~~~~~~~v~~im~~ni~~~l~Rge~l~ 142 (203)
.++.++..+ ..++|.+|+|-|+++
T Consensus 3 ~IkkELtQI----K~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQI----KQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhhh
Confidence 355566553 468888888877764
No 38
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=57.54 E-value=40 Score=22.52 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 161 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 161 (203)
.++.++..+.+.-+-+.+.-+++-+=.++-+.|...|......|....+.
T Consensus 38 eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rk 87 (96)
T 1sfc_A 38 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555666666666666555443
No 39
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=57.22 E-value=30 Score=20.95 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=27.9
Q ss_pred HhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHHHH
Q 028846 120 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 170 (203)
Q Consensus 120 ~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 170 (203)
+..++.-+.+-.+-+.++-+++-.--++-+.|.+.|.....+|...++..-
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~ 54 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGAN 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455554444445555666667777777666655443
No 40
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=56.51 E-value=33 Score=21.26 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhH
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 155 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s 155 (203)
..+.+++..+.++.+++.+=-..+.+.|+.|+.++...+.-..+.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 54 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDV 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 367889999999999988877788899999999987766665443
No 41
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=56.38 E-value=2.9 Score=29.61 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 028846 170 WLQNMKIKLIVLGILIALILIIVL 193 (203)
Q Consensus 170 ~~~~~k~~iii~~iv~~~~~ii~~ 193 (203)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555555554
No 42
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=52.74 E-value=25 Score=19.91 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhccCCc
Q 028846 182 GILIALILIIVLSVCHGFN 200 (203)
Q Consensus 182 ~iv~~~~~ii~~~~C~gf~ 200 (203)
+++++.+++..++-||=|+
T Consensus 20 GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 20 GLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 3344444555677884444
No 43
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=51.90 E-value=13 Score=22.39 Aligned_cols=19 Identities=32% Similarity=0.537 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhccCCc
Q 028846 182 GILIALILIIVLSVCHGFN 200 (203)
Q Consensus 182 ~iv~~~~~ii~~~~C~gf~ 200 (203)
+++++.+++..++-||=|+
T Consensus 19 GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 19 GLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 3444444555677885443
No 44
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.75 E-value=12 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhccCCc
Q 028846 182 GILIALILIIVLSVCHGFN 200 (203)
Q Consensus 182 ~iv~~~~~ii~~~~C~gf~ 200 (203)
+++++.+++..++-||=|+
T Consensus 22 GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 22 GLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCccc
Confidence 3444444555677884443
No 45
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=51.04 E-value=27 Score=25.08 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=40.9
Q ss_pred HHHHhcCCCC---CCeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHH-HHHHh
Q 028846 33 YQCLQKLPAS---NNKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVK-DEFVS 91 (203)
Q Consensus 33 ~~il~ki~~~---~~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~-~~f~~ 91 (203)
..+.+++.|. ..-.+++.++|..|+. .-.|+=|+.++|+..+ -.-.||+++. +.|.+
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVE 107 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHH
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHH
Confidence 4556666654 2456778889977754 4679999999998754 3567899999 57665
No 46
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=50.32 E-value=23 Score=22.57 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=1.5
Q ss_pred hccCCccc
Q 028846 195 VCHGFNCG 202 (203)
Q Consensus 195 ~C~gf~C~ 202 (203)
.+|-.+|.
T Consensus 39 lS~kcrCk 46 (74)
T 2zxe_G 39 LAGKCRCK 46 (74)
T ss_dssp TTTC----
T ss_pred HcCccccC
Confidence 33333553
No 47
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=49.50 E-value=42 Score=20.47 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhH
Q 028846 111 GKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 155 (203)
Q Consensus 111 ~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s 155 (203)
..+.+++..+.++.+++.+=-.-+-+.|+.|+.++...+.-..+.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999988777778899999999987666655443
No 48
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=48.57 E-value=45 Score=20.47 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 160 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 160 (203)
.++.+...+.+..+-+.+..+++-.=.++-+.|.+.+++.+..|..+++
T Consensus 12 qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 12 AASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555566666666666666655543
No 49
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=46.04 E-value=13 Score=18.32 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhh
Q 028846 162 GTKMRRKMWLQNM 174 (203)
Q Consensus 162 a~~l~~~~~~~~~ 174 (203)
-..++|+||..+.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578899998874
No 50
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=45.73 E-value=45 Score=24.39 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHhcCCCCC---CeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHH-HHHh
Q 028846 33 YQCLQKLPASN---NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKD-EFVS 91 (203)
Q Consensus 33 ~~il~ki~~~~---~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~-~f~~ 91 (203)
+.+.+++.|.+ .-..++.+.|..|+. .-.|+=|++++|+..+ -.-.+|++|.+ .|.+
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 55667777653 445667788877765 4579999999997744 45578888886 6655
No 51
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=44.81 E-value=52 Score=20.19 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
...+.+++..+.++.+++.+=-..+.+.|+.|+.++...+.-..+
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 55 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 55 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 347888999999999998887778889999999998766655544
No 52
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=43.58 E-value=46 Score=22.69 Aligned_cols=44 Identities=14% Similarity=0.428 Sum_probs=32.6
Q ss_pred cceEEEEEEeCCeEEEeecCCCCCHHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEE
Q 028846 4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (203)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~ 59 (203)
.-|+|.-|++++. |+++++.| +++.-+.+--++++++..||...
T Consensus 84 dgiiyltiskdni--cqfsdekg----------eqidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 84 DGIIYLTISKDNI--CQFSDEKG----------EQIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp CEEEEEEECTTCC--EEEECTTS----------CEECCCSSSSEEEETTEEEEEEE
T ss_pred CcEEEEEEecCcc--eecccccC----------cEeeccccccceeecceEeehhc
Confidence 4589999999884 88988766 23444444458999999999854
No 53
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.81 E-value=41 Score=17.98 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.8
Q ss_pred hHHHHhhhhhhhHh
Q 028846 141 IELLVDKTENLHQQ 154 (203)
Q Consensus 141 l~~l~~ks~~L~~~ 154 (203)
++.|++|.+.|-..
T Consensus 3 MnQLE~kVEeLl~~ 16 (34)
T 2oxj_A 3 MXQLEXKVXELLXK 16 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444433
No 54
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=39.76 E-value=68 Score=24.89 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=33.8
Q ss_pred eEEEeCCeEEEE-EEeCCEEEEEEecCCCCc----------------------chHHHHHHHHHHHHHh
Q 028846 46 FTYNCDAHTFNY-LVDNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVS 91 (203)
Q Consensus 46 ~~~~~~~~~~~~-l~~~~~~~~~itd~~~~~----------------------~~af~fL~~i~~~f~~ 91 (203)
..+..+.|..|+ ..-.|+=|++++|+..+. ...-.||.+|.+.|.+
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 456667777764 456799999999987633 4467899999988866
No 55
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=37.40 E-value=80 Score=20.19 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 110 FGKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 110 f~kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
...+.+++..+.++.+++.+=-.-+.+.|+-|+.++...+.-..+
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 64 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 347889999999999998877777889999999988766655544
No 56
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=36.46 E-value=28 Score=21.98 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhh
Q 028846 117 KAQVSEVKGVMMENIEKVLDRGE 139 (203)
Q Consensus 117 ~~~~~~v~~im~~ni~~~l~Rge 139 (203)
.++++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999988864
No 57
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.81 E-value=57 Score=17.39 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=3.9
Q ss_pred HHHhhhhhhh
Q 028846 143 LLVDKTENLH 152 (203)
Q Consensus 143 ~l~~ks~~L~ 152 (203)
.|++|-++|-
T Consensus 5 QLEdKVEeLl 14 (34)
T 3c3f_A 5 QIEXKLEXIL 14 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 58
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=33.40 E-value=89 Score=19.52 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 161 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 161 (203)
.++.++.-+.+.-+-+.+.-+++-.=.++-+.|...|......|....+.
T Consensus 16 el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 16 QVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333344444444444555555666666666666655543
No 59
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=33.27 E-value=1.7e+02 Score=22.64 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHhcCCCCC---CeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhh
Q 028846 33 YQCLQKLPASN---NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSK 92 (203)
Q Consensus 33 ~~il~ki~~~~---~k~~~~~~~~~~~~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~ 92 (203)
..+.+++.|.+ .-..++.+.|..|+. ...|+-|+.++|+. ....-.||+++.+.|.+.
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~ 180 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDF 180 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHH
Confidence 44456676642 335778888888754 46799999999986 445678999999877664
No 60
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=31.56 E-value=81 Score=18.47 Aligned_cols=39 Identities=8% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHh
Q 028846 116 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 154 (203)
Q Consensus 116 ~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 154 (203)
...-+.++.++-.+.+..+-+.||.|+...+.-++...+
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 445667788888889999999999999887766665554
No 61
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=30.94 E-value=70 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028846 175 KIKLIVLGILIALILIIV 192 (203)
Q Consensus 175 k~~iii~~iv~~~~~ii~ 192 (203)
+..+++++++.++.++|+
T Consensus 37 ~~t~vv~~~v~~i~~~i~ 54 (65)
T 3bo0_B 37 KVTALGISLLGIIGYIIH 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhHHHHHHHHHH
Confidence 333333333333334433
No 62
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.40 E-value=97 Score=19.69 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 161 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 161 (203)
.++.++..+.+.-+-+.+.-+++-+=.++-+.|...|......|...++.
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666777777777777778888888888888877553
No 63
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=29.66 E-value=1.1e+02 Score=19.96 Aligned_cols=49 Identities=10% Similarity=0.295 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHhh---HHHHHHHHHhhhhhhh
Q 028846 75 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG---KLAKVKAQVSEVKGVM 127 (203)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~l~~~f~---kl~~~~~~~~~v~~im 127 (203)
-++|-.||.++...|.+..+ .+..+|.+. -+|. -++.+-.+++++++..
T Consensus 25 frlaekflremhakymkrvs---rpgntprpw-fdfseerllsrlfeemdelreav 76 (114)
T 2p06_A 25 FRLAEKFLREMHAKYMKRVS---RPGNTPRPW-FDFSEERLLSRLFEEMDELREAV 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---STTCCSCHH-HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc---CCCCCCCCc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999988763 233445443 2333 3566666666665443
No 64
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=28.59 E-value=58 Score=17.70 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 028846 178 LIVLGILIALI 188 (203)
Q Consensus 178 iii~~iv~~~~ 188 (203)
.++++++++++
T Consensus 7 ~ivalivalIi 17 (36)
T 1pi7_A 7 AIVALVVAIII 17 (36)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 65
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=28.35 E-value=13 Score=23.23 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 028846 176 IKLIVLGILIALILIIVLSVC 196 (203)
Q Consensus 176 ~~iii~~iv~~~~~ii~~~~C 196 (203)
+.+++++++.+++|+-+..+|
T Consensus 10 ~LivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 335666666666655555554
No 66
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=27.31 E-value=1.2e+02 Score=18.97 Aligned_cols=48 Identities=6% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHH
Q 028846 119 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMR 166 (203)
Q Consensus 119 ~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~ 166 (203)
-.++...+=..++..+-+-||+|+..+..-+.+..+.+.=.++.+.|+
T Consensus 20 ~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 20 MAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455556678888889999999888877777777665555555554
No 67
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.06 E-value=1.2e+02 Score=19.12 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=25.8
Q ss_pred HhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhh
Q 028846 120 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 161 (203)
Q Consensus 120 ~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 161 (203)
+.+.+..+.+-.+++-++.+.|+.|+..-......-..++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666667777777777776666555555555443
No 68
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.88 E-value=81 Score=17.02 Aligned_cols=9 Identities=44% Similarity=0.449 Sum_probs=3.4
Q ss_pred HHHhhhhhh
Q 028846 143 LLVDKTENL 151 (203)
Q Consensus 143 ~l~~ks~~L 151 (203)
.|++|.++|
T Consensus 5 QLE~KVEeL 13 (36)
T 1kd8_B 5 QLKAKVEEL 13 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 69
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=26.40 E-value=35 Score=27.36 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 028846 164 KMRRKMWLQNMKIKLIVLGIL 184 (203)
Q Consensus 164 ~l~~~~~~~~~k~~iii~~iv 184 (203)
+-.+|.|+++.-.++++++++
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~ 46 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILI 46 (263)
T ss_dssp ---------CCTTHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHH
Confidence 444556666665444444433
No 70
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=25.32 E-value=51 Score=26.15 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhh
Q 028846 112 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 152 (203)
Q Consensus 112 kl~~~~~~~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~ 152 (203)
.|.+++..+.++.+++.+=-.-+.+.|+.|+.++...+.-.
T Consensus 201 ~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 201 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67888888889988887766778899999999887665443
No 71
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=24.23 E-value=1.9e+02 Score=20.32 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=34.6
Q ss_pred eeEEEeCCeEEEE-EEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 028846 45 KFTYNCDAHTFNY-LVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93 (203)
Q Consensus 45 k~~~~~~~~~~~~-l~~~~~~~~~itd~~~~~~~af~fL~~i~~~f~~~~ 93 (203)
..+...+++..|+ ....|+=|+.++|+. .....-.||+++.+.|.+..
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 3455667887774 556799999999973 24457789999998876643
No 72
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.85 E-value=93 Score=19.14 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHHhhhhhHHHHhhhhhhhHhHHH
Q 028846 134 VLDRGEKIELLVDKTENLHQQAQD 157 (203)
Q Consensus 134 ~l~Rge~l~~l~~ks~~L~~~s~~ 157 (203)
++++|++|..|...+.........
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q~~ 30 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQKR 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777666655544333
No 73
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.61 E-value=99 Score=19.25 Aligned_cols=8 Identities=0% Similarity=0.351 Sum_probs=3.0
Q ss_pred hhHHHHHH
Q 028846 173 NMKIKLIV 180 (203)
Q Consensus 173 ~~k~~iii 180 (203)
..++.-++
T Consensus 16 tLRigGLi 23 (67)
T 2jp3_A 16 SLQLGGLI 23 (67)
T ss_dssp HHHHHHHH
T ss_pred Hheecchh
Confidence 33433333
No 74
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.31 E-value=1.5e+02 Score=17.96 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=23.4
Q ss_pred HhhhhhhhhhhHHHHHHhhhhhHHHHhhhhhhhHhHHHHHhhHHHHHHH
Q 028846 120 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRK 168 (203)
Q Consensus 120 ~~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~ 168 (203)
+..++.-+.+-.+-+.++-+++-.=-++-+.|.+.|.....+|...++.
T Consensus 11 l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 11 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333444444444444444455556666666665555443
Done!