Query 028847
Match_columns 203
No_of_seqs 211 out of 2106
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03767 NAD(P)H:quinone oxido 100.0 1.2E-37 2.5E-42 240.3 23.4 199 1-201 1-200 (200)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 3.8E-37 8.2E-42 236.6 22.5 195 4-199 2-197 (197)
3 KOG3135 1,4-benzoquinone reduc 100.0 1.1E-35 2.3E-40 213.8 19.4 199 2-201 1-202 (203)
4 PRK05569 flavodoxin; Provision 100.0 9.2E-27 2E-31 170.1 17.1 138 2-193 1-140 (141)
5 COG0655 WrbA Multimeric flavod 100.0 1.5E-26 3.3E-31 179.2 18.0 195 4-199 2-205 (207)
6 PRK05568 flavodoxin; Provision 99.9 2.2E-26 4.8E-31 168.3 16.9 139 2-194 1-141 (142)
7 PRK06756 flavodoxin; Provision 99.9 2.7E-26 5.8E-31 169.0 16.9 145 1-195 1-146 (148)
8 PRK06703 flavodoxin; Provision 99.9 4.6E-25 1E-29 162.9 16.5 148 1-199 1-150 (151)
9 PRK06242 flavodoxin; Provision 99.9 7E-25 1.5E-29 161.7 13.6 146 4-195 2-149 (150)
10 TIGR01753 flav_short flavodoxi 99.9 5.7E-24 1.2E-28 154.9 15.5 138 5-193 1-140 (140)
11 PRK11921 metallo-beta-lactamas 99.9 3.5E-24 7.6E-29 180.8 16.4 145 2-196 247-393 (394)
12 PF03358 FMN_red: NADPH-depend 99.9 1.9E-24 4.1E-29 159.7 10.2 138 4-146 2-144 (152)
13 PRK07308 flavodoxin; Validated 99.9 4E-23 8.8E-28 151.7 15.9 144 2-195 1-145 (146)
14 PRK05452 anaerobic nitric oxid 99.9 2.7E-23 5.9E-28 178.7 17.0 146 2-197 251-397 (479)
15 PRK09267 flavodoxin FldA; Vali 99.9 5.3E-22 1.1E-26 149.2 17.9 163 1-195 1-166 (169)
16 PRK10569 NAD(P)H-dependent FMN 99.9 1E-22 2.2E-27 155.6 14.0 170 4-198 2-174 (191)
17 TIGR03566 FMN_reduc_MsuE FMN r 99.9 6.7E-22 1.4E-26 149.3 12.5 169 4-197 1-172 (174)
18 PRK00170 azoreductase; Reviewe 99.9 1.1E-21 2.4E-26 151.3 12.9 142 1-144 1-171 (201)
19 TIGR03567 FMN_reduc_SsuE FMN r 99.9 6.3E-21 1.4E-25 143.6 12.6 167 4-194 1-170 (171)
20 PRK12359 flavodoxin FldB; Prov 99.9 7.6E-20 1.7E-24 136.9 18.2 162 4-196 2-168 (172)
21 PRK01355 azoreductase; Reviewe 99.9 1.3E-20 2.9E-25 145.1 13.9 142 2-143 1-164 (199)
22 COG0426 FpaA Uncharacterized f 99.8 3.1E-20 6.7E-25 152.9 14.6 141 4-194 248-388 (388)
23 PRK13556 azoreductase; Provisi 99.8 9.3E-20 2E-24 141.4 13.4 142 2-144 1-177 (208)
24 TIGR02690 resist_ArsH arsenica 99.8 2.6E-19 5.6E-24 138.6 15.4 172 3-199 27-203 (219)
25 PRK09739 hypothetical protein; 99.8 6.9E-20 1.5E-24 141.2 11.5 118 2-120 3-133 (199)
26 TIGR01752 flav_long flavodoxin 99.8 8.6E-19 1.9E-23 131.5 17.0 158 4-193 1-163 (167)
27 PRK09271 flavodoxin; Provision 99.8 6.2E-19 1.4E-23 131.3 14.2 142 4-196 2-147 (160)
28 PRK06934 flavodoxin; Provision 99.8 3.3E-19 7.2E-24 137.8 10.6 112 3-122 36-174 (221)
29 PF12682 Flavodoxin_4: Flavodo 99.8 3.1E-19 6.8E-24 132.0 9.8 106 4-120 1-116 (156)
30 TIGR01754 flav_RNR ribonucleot 99.8 2E-18 4.2E-23 125.9 13.6 106 4-135 2-111 (140)
31 PRK13555 azoreductase; Provisi 99.8 5.5E-18 1.2E-22 131.0 14.6 139 2-140 1-173 (208)
32 PRK07116 flavodoxin; Provision 99.8 1.6E-18 3.5E-23 129.1 11.1 109 2-120 2-119 (160)
33 PF02525 Flavodoxin_2: Flavodo 99.8 2E-17 4.3E-22 127.5 13.9 140 3-144 1-173 (199)
34 PRK09004 FMN-binding protein M 99.8 3.7E-17 8E-22 119.8 14.0 119 2-145 1-120 (146)
35 COG0716 FldA Flavodoxins [Ener 99.7 9.1E-17 2E-21 118.6 15.0 148 2-195 1-150 (151)
36 PRK11104 hemG protoporphyrinog 99.7 1.4E-17 2.9E-22 126.0 9.5 88 4-118 2-89 (177)
37 PRK04930 glutathione-regulated 99.7 4.6E-16 9.9E-21 117.6 13.1 132 2-145 5-151 (184)
38 COG0431 Predicted flavoprotein 99.7 3.9E-16 8.5E-21 118.8 12.5 130 4-145 2-137 (184)
39 PF12641 Flavodoxin_3: Flavodo 99.7 1.2E-15 2.5E-20 113.1 13.9 148 6-190 1-160 (160)
40 COG1182 AcpD Acyl carrier prot 99.7 1.9E-15 4.1E-20 113.8 13.0 140 2-141 1-171 (202)
41 PRK08105 flavodoxin; Provision 99.7 2.9E-15 6.3E-20 110.2 13.6 121 2-145 1-122 (149)
42 PF12724 Flavodoxin_5: Flavodo 99.6 1.7E-15 3.7E-20 110.8 10.6 89 6-121 1-89 (143)
43 PF00258 Flavodoxin_1: Flavodo 99.6 4.6E-15 9.9E-20 108.3 11.6 121 7-146 1-126 (143)
44 COG2249 MdaB Putative NADPH-qu 99.6 2.2E-15 4.9E-20 114.4 9.7 111 4-119 2-125 (189)
45 COG4635 HemG Flavodoxin [Energ 99.6 3.4E-15 7.5E-20 107.6 6.8 88 4-117 2-89 (175)
46 PRK00871 glutathione-regulated 99.6 6.2E-14 1.4E-18 105.4 12.2 125 5-145 2-143 (176)
47 PRK05723 flavodoxin; Provision 99.5 3.4E-13 7.4E-18 99.2 14.3 118 4-145 2-123 (151)
48 PRK10953 cysJ sulfite reductas 99.5 1.9E-12 4.1E-17 114.4 14.7 121 2-144 61-182 (600)
49 KOG4530 Predicted flavoprotein 99.4 1.2E-12 2.6E-17 94.2 8.2 132 3-142 11-150 (199)
50 TIGR01931 cysJ sulfite reducta 99.4 8.6E-12 1.9E-16 110.5 14.5 120 3-144 59-179 (597)
51 PRK03600 nrdI ribonucleotide r 99.2 5.4E-10 1.2E-14 80.5 11.6 122 4-193 2-129 (134)
52 TIGR00333 nrdI ribonucleoside- 98.9 2.5E-08 5.4E-13 70.8 10.5 76 7-121 1-77 (125)
53 PRK02551 flavoprotein NrdI; Pr 98.6 4.8E-07 1E-11 66.5 10.5 139 2-195 1-152 (154)
54 KOG1159 NADP-dependent flavopr 98.4 1.7E-06 3.7E-11 73.3 9.5 118 4-142 2-121 (574)
55 COG1780 NrdI Protein involved 98.0 8.8E-05 1.9E-09 52.7 9.4 127 5-198 3-135 (141)
56 PF07972 Flavodoxin_NdrI: NrdI 97.8 7.2E-05 1.6E-09 52.8 5.9 78 7-118 1-83 (122)
57 COG0369 CysJ Sulfite reductase 97.1 0.0036 7.7E-08 55.7 9.2 118 3-142 48-166 (587)
58 PRK10427 putative PTS system f 96.9 0.0068 1.5E-07 42.4 7.1 85 1-117 1-87 (114)
59 PRK10310 PTS system galactitol 96.7 0.0047 1E-07 41.6 5.2 38 2-40 1-39 (94)
60 COG1440 CelA Phosphotransferas 96.1 0.064 1.4E-06 36.4 7.7 81 2-115 1-81 (102)
61 TIGR00853 pts-lac PTS system, 96.0 0.028 6E-07 38.0 5.8 38 2-41 3-40 (95)
62 COG1445 FrwB Phosphotransferas 95.9 0.047 1E-06 38.2 6.7 84 3-118 2-87 (122)
63 PRK09590 celB cellobiose phosp 95.7 0.023 5E-07 39.0 4.6 83 2-115 1-83 (104)
64 PRK07053 glutamine amidotransf 95.7 0.045 9.8E-07 43.2 6.8 57 1-80 1-58 (234)
65 PF02302 PTS_IIB: PTS system, 95.2 0.12 2.7E-06 34.0 6.7 57 4-80 1-57 (90)
66 PRK10499 PTS system N,N'-diace 95.1 0.51 1.1E-05 32.5 9.6 79 2-115 3-81 (106)
67 PRK13143 hisH imidazole glycer 94.9 0.1 2.2E-06 40.1 6.3 46 4-79 2-47 (200)
68 KOG1160 Fe-S oxidoreductase [E 94.4 0.21 4.6E-06 42.7 7.5 95 3-121 47-146 (601)
69 COG3414 SgaB Phosphotransferas 94.3 0.19 4.1E-06 33.8 5.7 32 2-34 1-32 (93)
70 PF06283 ThuA: Trehalose utili 93.9 0.62 1.3E-05 36.1 8.9 84 4-114 1-88 (217)
71 cd05565 PTS_IIB_lactose PTS_II 93.4 0.18 3.9E-06 34.3 4.5 79 4-115 2-80 (99)
72 cd05564 PTS_IIB_chitobiose_lic 93.1 0.2 4.3E-06 33.8 4.3 79 4-115 1-79 (96)
73 cd05566 PTS_IIB_galactitol PTS 93.0 0.32 7E-06 32.0 5.2 34 3-37 1-34 (89)
74 PRK13146 hisH imidazole glycer 92.2 0.81 1.8E-05 35.4 7.2 49 1-78 1-49 (209)
75 PRK06490 glutamine amidotransf 91.7 1.1 2.3E-05 35.5 7.6 35 2-41 7-41 (239)
76 CHL00188 hisH imidazole glycer 90.9 1.4 3E-05 34.2 7.3 49 1-80 1-49 (210)
77 cd05567 PTS_IIB_mannitol PTS_I 90.7 0.95 2.1E-05 29.7 5.4 35 3-38 1-35 (87)
78 PRK11574 oxidative-stress-resi 89.2 1.7 3.7E-05 33.0 6.6 104 1-117 1-109 (196)
79 PRK08250 glutamine amidotransf 89.2 3.2 6.8E-05 32.8 8.2 54 4-80 2-56 (235)
80 PF08357 SEFIR: SEFIR domain; 89.1 1.6 3.4E-05 31.6 6.0 66 3-79 1-67 (150)
81 cd05569 PTS_IIB_fructose PTS_I 88.6 2.7 5.7E-05 28.3 6.4 60 6-80 2-63 (96)
82 PRK06895 putative anthranilate 88.6 6 0.00013 29.9 9.1 52 3-80 2-54 (190)
83 PRK11404 putative PTS system 88.0 2.1 4.5E-05 37.6 6.9 59 4-77 5-65 (482)
84 PRK13608 diacylglycerol glucos 87.9 1.1 2.3E-05 38.1 5.0 41 2-43 5-48 (391)
85 PRK05637 anthranilate synthase 87.9 8.5 0.00019 29.8 9.7 34 2-41 1-34 (208)
86 PRK09065 glutamine amidotransf 87.7 5.6 0.00012 31.4 8.7 75 2-96 1-84 (237)
87 cd00133 PTS_IIB PTS_IIB: subun 87.6 2.2 4.8E-05 26.9 5.5 30 4-34 1-30 (84)
88 cd05568 PTS_IIB_bgl_like PTS_I 87.3 1.4 3E-05 28.4 4.3 27 3-29 1-27 (85)
89 TIGR00829 FRU PTS system, fruc 87.1 3.2 6.8E-05 27.3 5.9 59 7-80 2-62 (85)
90 cd05563 PTS_IIB_ascorbate PTS_ 87.0 2.2 4.8E-05 27.7 5.2 30 4-34 1-30 (86)
91 cd01748 GATase1_IGP_Synthase T 86.8 2.7 5.8E-05 32.1 6.3 45 5-79 1-45 (198)
92 PRK10017 colanic acid biosynth 86.7 11 0.00023 32.7 10.5 49 66-120 113-161 (426)
93 PRK02261 methylaspartate mutas 86.6 9.8 0.00021 27.4 11.9 113 2-141 1-115 (137)
94 PRK13170 hisH imidazole glycer 85.7 2.2 4.7E-05 32.7 5.2 43 4-76 2-44 (196)
95 PRK09548 PTS system ascorbate- 85.3 1.9 4.2E-05 38.6 5.3 36 2-38 506-541 (602)
96 PRK11780 isoprenoid biosynthes 84.7 4.9 0.00011 31.3 6.9 134 2-145 1-174 (217)
97 PRK01175 phosphoribosylformylg 84.7 8.7 0.00019 30.9 8.4 54 3-79 4-57 (261)
98 PRK10712 PTS system fructose-s 84.6 3.8 8.2E-05 36.7 6.9 63 3-80 104-168 (563)
99 PRK13527 glutamine amidotransf 83.6 8.6 0.00019 29.4 7.8 51 4-79 2-52 (200)
100 PRK11538 ribosome-associated p 83.0 4.7 0.0001 27.7 5.4 57 16-96 3-59 (105)
101 PRK11559 garR tartronate semia 82.9 19 0.00041 29.1 10.0 119 1-147 1-123 (296)
102 PRK13055 putative lipid kinase 82.0 7.2 0.00016 32.4 7.3 40 1-41 1-42 (334)
103 PRK13525 glutamine amidotransf 81.5 7.3 0.00016 29.6 6.6 13 67-79 35-47 (189)
104 cd01750 GATase1_CobQ Type 1 gl 81.0 6.1 0.00013 30.1 6.0 46 6-80 2-47 (194)
105 PRK01372 ddl D-alanine--D-alan 80.9 9.5 0.00021 30.9 7.6 41 1-42 3-46 (304)
106 TIGR01737 FGAM_synth_I phospho 79.9 15 0.00032 28.7 8.1 48 4-79 2-49 (227)
107 PRK13141 hisH imidazole glycer 78.9 8.9 0.00019 29.3 6.4 45 5-79 2-46 (205)
108 cd03825 GT1_wcfI_like This fam 78.7 13 0.00028 30.2 7.8 39 4-43 2-41 (365)
109 PRK09765 PTS system 2-O-a-mann 78.7 8 0.00017 35.2 6.9 63 3-80 164-228 (631)
110 COG0118 HisH Glutamine amidotr 78.4 6.7 0.00014 30.2 5.4 80 3-116 2-83 (204)
111 PRK03619 phosphoribosylformylg 78.3 18 0.00038 28.2 8.0 47 4-78 2-49 (219)
112 PF13380 CoA_binding_2: CoA bi 78.2 12 0.00025 26.0 6.3 108 3-145 1-109 (116)
113 PRK11880 pyrroline-5-carboxyla 77.5 13 0.00027 29.6 7.2 24 67-96 59-82 (267)
114 PRK08229 2-dehydropantoate 2-r 77.4 16 0.00035 30.2 8.0 73 1-82 1-85 (341)
115 PRK13054 lipid kinase; Reviewe 76.7 15 0.00032 29.9 7.5 39 1-41 2-40 (300)
116 cd03147 GATase1_Ydr533c_like T 76.1 15 0.00033 28.8 7.1 42 67-115 91-135 (231)
117 PRK05928 hemD uroporphyrinogen 75.8 9.7 0.00021 29.6 6.0 41 66-114 48-88 (249)
118 PRK14571 D-alanyl-alanine synt 75.6 16 0.00035 29.6 7.4 38 4-42 2-42 (299)
119 PRK14188 bifunctional 5,10-met 75.5 44 0.00095 27.5 11.2 39 4-43 34-72 (296)
120 KOG3179 Predicted glutamine sy 75.0 37 0.00081 26.4 8.8 65 3-88 5-79 (245)
121 PRK00861 putative lipid kinase 74.9 18 0.00039 29.4 7.5 40 1-42 1-42 (300)
122 PRK05282 (alpha)-aspartyl dipe 74.9 9.2 0.0002 30.2 5.5 15 65-79 74-88 (233)
123 PF00289 CPSase_L_chain: Carba 74.4 9.7 0.00021 26.3 5.0 106 1-145 1-106 (110)
124 PLN02617 imidazole glycerol ph 73.2 11 0.00023 33.7 6.1 46 3-78 7-52 (538)
125 cd03142 GATase1_ThuA Type 1 gl 72.7 34 0.00073 26.7 8.1 61 19-97 24-86 (215)
126 PF02410 Oligomerisation: Olig 72.7 8.7 0.00019 26.0 4.3 54 19-96 1-54 (100)
127 cd00877 Ran Ran (Ras-related n 71.9 22 0.00047 25.9 6.8 46 66-116 68-113 (166)
128 cd01741 GATase1_1 Subgroup of 71.8 26 0.00056 26.2 7.3 72 4-96 1-77 (188)
129 PRK14194 bifunctional 5,10-met 71.5 56 0.0012 26.9 11.2 39 4-43 35-73 (301)
130 COG1587 HemD Uroporphyrinogen- 70.9 24 0.00053 27.8 7.2 73 21-113 136-210 (248)
131 PRK11914 diacylglycerol kinase 70.7 17 0.00037 29.6 6.5 39 2-41 8-48 (306)
132 PF13192 Thioredoxin_3: Thiore 70.5 15 0.00032 23.2 4.9 37 4-42 2-38 (76)
133 PF01695 IstB_IS21: IstB-like 70.4 6.7 0.00014 29.5 3.7 68 4-78 48-116 (178)
134 COG0287 TyrA Prephenate dehydr 70.3 17 0.00037 29.5 6.2 62 18-81 13-75 (279)
135 PRK06444 prephenate dehydrogen 70.1 7 0.00015 30.0 3.8 27 4-36 2-28 (197)
136 PRK02645 ppnK inorganic polyph 69.5 11 0.00024 31.0 5.1 37 2-39 3-39 (305)
137 KOG1158 NADP/FAD dependent oxi 68.6 22 0.00048 32.5 7.0 116 3-142 47-164 (645)
138 COG1810 Uncharacterized protei 68.5 11 0.00025 29.3 4.5 21 1-24 1-21 (224)
139 COG0512 PabA Anthranilate/para 68.3 43 0.00094 25.6 7.6 68 3-94 2-73 (191)
140 PF01866 Diphthamide_syn: Puta 68.2 22 0.00047 29.2 6.6 43 3-46 210-253 (307)
141 TIGR01855 IMP_synth_hisH imida 67.8 13 0.00027 28.4 4.8 44 6-79 2-45 (196)
142 COG2910 Putative NADH-flavin r 67.7 46 0.00099 25.6 7.5 85 4-96 2-88 (211)
143 PRK05665 amidotransferase; Pro 67.6 59 0.0013 25.7 8.7 14 67-80 54-67 (240)
144 PRK05479 ketol-acid reductoiso 67.5 61 0.0013 27.1 9.0 56 19-80 28-83 (330)
145 COG0240 GpsA Glycerol-3-phosph 67.4 73 0.0016 26.6 10.2 98 3-119 2-109 (329)
146 PRK07765 para-aminobenzoate sy 67.3 56 0.0012 25.3 9.3 54 4-79 2-56 (214)
147 PRK13059 putative lipid kinase 67.2 34 0.00074 27.8 7.5 39 3-42 2-42 (295)
148 PRK13609 diacylglycerol glucos 66.9 11 0.00023 31.6 4.6 40 2-42 4-44 (380)
149 PF10087 DUF2325: Uncharacteri 66.9 35 0.00075 22.7 7.5 43 65-117 43-85 (97)
150 COG3360 Uncharacterized conser 66.8 11 0.00024 23.6 3.4 37 3-41 7-43 (71)
151 TIGR01823 PabB-fungal aminodeo 66.8 61 0.0013 30.3 9.7 72 4-95 7-81 (742)
152 PRK08727 hypothetical protein; 66.7 59 0.0013 25.4 8.5 57 5-77 43-100 (233)
153 PLN02832 glutamine amidotransf 66.4 23 0.00049 28.3 6.0 13 66-78 34-46 (248)
154 PRK10125 putative glycosyl tra 66.1 18 0.0004 30.8 6.0 39 4-43 2-41 (405)
155 PF01210 NAD_Gly3P_dh_N: NAD-d 66.1 10 0.00022 27.8 3.8 42 66-118 65-106 (157)
156 PRK00094 gpsA NAD(P)H-dependen 66.1 70 0.0015 26.0 9.3 25 67-97 68-92 (325)
157 PF03446 NAD_binding_2: NAD bi 65.9 21 0.00045 26.2 5.5 119 2-147 1-121 (163)
158 KOG0093 GTPase Rab3, small G p 65.9 24 0.00053 26.0 5.5 110 2-115 21-134 (193)
159 PRK11199 tyrA bifunctional cho 65.9 16 0.00034 31.0 5.4 55 3-81 99-153 (374)
160 PRK01231 ppnK inorganic polyph 65.8 15 0.00032 30.1 5.1 37 2-39 4-40 (295)
161 PRK05788 cobalamin biosynthesi 65.7 15 0.00032 30.4 5.1 55 3-80 4-61 (315)
162 PRK04155 chaperone protein Hch 65.1 35 0.00075 27.9 7.0 39 3-42 50-100 (287)
163 PRK09212 pyruvate dehydrogenas 65.0 46 0.001 27.6 8.0 70 13-96 209-279 (327)
164 PRK08818 prephenate dehydrogen 64.4 19 0.00042 30.5 5.6 16 66-81 47-62 (370)
165 COG0693 ThiJ Putative intracel 64.3 48 0.001 24.7 7.4 103 1-116 1-108 (188)
166 COG3828 Uncharacterized protei 64.2 4.1 9E-05 31.2 1.4 37 1-38 2-39 (239)
167 cd04962 GT1_like_5 This family 64.1 8.4 0.00018 31.6 3.5 37 4-41 2-38 (371)
168 COG3340 PepE Peptidase E [Amin 63.8 30 0.00065 27.0 6.0 14 66-79 80-93 (224)
169 PF00117 GATase: Glutamine ami 63.3 52 0.0011 24.5 7.5 63 11-96 5-68 (192)
170 TIGR00514 accC acetyl-CoA carb 63.3 54 0.0012 28.4 8.4 34 1-41 1-34 (449)
171 PRK00074 guaA GMP synthase; Re 62.6 32 0.0007 30.5 6.9 35 1-41 2-36 (511)
172 PRK14179 bifunctional 5,10-met 62.5 85 0.0018 25.6 11.4 39 4-43 34-72 (284)
173 PF00781 DAGK_cat: Diacylglyce 62.1 51 0.0011 23.0 7.0 71 4-96 1-74 (130)
174 cd04124 RabL2 RabL2 subfamily. 62.0 31 0.00067 24.8 5.8 47 65-116 67-113 (161)
175 PRK05395 3-dehydroquinate dehy 61.9 46 0.00099 24.3 6.4 78 3-96 2-92 (146)
176 PRK00994 F420-dependent methyl 61.9 80 0.0017 25.2 9.8 90 1-115 1-95 (277)
177 COG0002 ArgC Acetylglutamate s 61.6 36 0.00078 28.6 6.6 37 1-42 1-37 (349)
178 COG2454 Uncharacterized conser 61.0 26 0.00057 27.0 5.2 73 3-91 129-201 (211)
179 TIGR00090 iojap_ybeB iojap-lik 61.0 20 0.00044 24.1 4.3 53 20-96 2-54 (99)
180 COG1597 LCB5 Sphingosine kinas 60.8 46 0.001 27.3 7.2 42 1-43 1-44 (301)
181 cd01866 Rab2 Rab2 subfamily. 60.5 61 0.0013 23.3 7.6 47 66-116 72-118 (168)
182 PRK13566 anthranilate synthase 60.4 58 0.0013 30.3 8.3 34 3-42 527-560 (720)
183 PRK00726 murG undecaprenyldiph 60.1 15 0.00032 30.4 4.2 39 2-42 1-39 (357)
184 TIGR00322 diphth2_R diphthamid 60.0 32 0.00069 28.7 6.1 43 3-46 233-276 (332)
185 PRK15005 universal stress prot 59.9 22 0.00047 24.9 4.6 41 1-42 1-42 (144)
186 TIGR00147 lipid kinase, YegS/R 59.8 52 0.0011 26.5 7.3 40 2-42 1-42 (293)
187 COG1484 DnaC DNA replication p 59.7 11 0.00024 30.0 3.3 67 4-77 106-174 (254)
188 PF03575 Peptidase_S51: Peptid 59.7 14 0.00031 26.8 3.7 40 21-77 3-42 (154)
189 PRK08655 prephenate dehydrogen 59.7 49 0.0011 28.7 7.4 78 4-97 2-79 (437)
190 COG1927 Mtd Coenzyme F420-depe 59.4 84 0.0018 24.6 11.1 95 1-115 1-95 (277)
191 PRK00436 argC N-acetyl-gamma-g 59.0 45 0.00098 27.8 6.9 15 67-81 65-79 (343)
192 PF04723 GRDA: Glycine reducta 58.7 39 0.00084 24.4 5.4 63 104-192 2-64 (150)
193 cd05212 NAD_bind_m-THF_DH_Cycl 58.6 36 0.00077 24.6 5.5 53 4-81 30-82 (140)
194 PRK10712 PTS system fructose-s 58.5 22 0.00047 32.0 5.1 32 4-36 2-35 (563)
195 PRK06545 prephenate dehydrogen 58.3 1.1E+02 0.0024 25.6 9.6 71 19-97 11-81 (359)
196 cd03802 GT1_AviGT4_like This f 57.9 23 0.0005 28.4 5.0 39 4-43 2-47 (335)
197 CHL00144 odpB pyruvate dehydro 57.8 71 0.0015 26.6 7.8 69 13-95 209-278 (327)
198 cd04121 Rab40 Rab40 subfamily. 57.8 77 0.0017 23.8 7.5 46 66-116 74-119 (189)
199 smart00175 RAB Rab subfamily o 57.5 60 0.0013 22.9 6.7 48 65-116 67-114 (164)
200 cd01867 Rab8_Rab10_Rab13_like 57.4 69 0.0015 23.0 8.1 48 65-116 70-117 (167)
201 PRK10834 vancomycin high tempe 57.1 35 0.00075 27.1 5.5 62 73-139 48-111 (239)
202 PLN03071 GTP-binding nuclear p 56.6 48 0.001 25.5 6.3 45 67-116 82-126 (219)
203 COG3019 Predicted metal-bindin 56.3 66 0.0014 23.4 6.2 67 5-88 27-94 (149)
204 TIGR01815 TrpE-clade3 anthrani 56.1 56 0.0012 30.4 7.4 33 3-41 517-549 (717)
205 PF00885 DMRL_synthase: 6,7-di 55.1 76 0.0016 23.0 6.7 67 4-84 5-76 (144)
206 TIGR02717 AcCoA-syn-alpha acet 55.1 1.4E+02 0.0031 25.9 11.5 63 70-145 64-128 (447)
207 cd03132 GATase1_catalase Type 54.9 67 0.0014 22.6 6.5 98 3-116 2-104 (142)
208 PRK15083 PTS system mannitol-s 54.6 29 0.00063 31.7 5.4 37 3-40 379-416 (639)
209 PRK06217 hypothetical protein; 54.3 19 0.00041 26.9 3.6 25 2-27 1-25 (183)
210 COG2984 ABC-type uncharacteriz 54.2 61 0.0013 26.9 6.6 40 3-43 160-199 (322)
211 PF09822 ABC_transp_aux: ABC-t 54.1 1E+02 0.0022 24.5 8.0 68 67-143 193-266 (271)
212 PLN02683 pyruvate dehydrogenas 54.1 1E+02 0.0022 26.1 8.2 69 13-95 236-305 (356)
213 COG0799 Uncharacterized homolo 53.5 66 0.0014 22.5 5.8 57 16-96 3-59 (115)
214 PRK10264 hydrogenase 1 maturat 53.3 53 0.0011 25.2 5.9 69 3-90 4-77 (195)
215 PF01220 DHquinase_II: Dehydro 53.2 65 0.0014 23.4 5.9 76 4-96 2-91 (140)
216 PRK13152 hisH imidazole glycer 53.0 41 0.00088 25.6 5.3 45 5-79 2-46 (201)
217 cd01868 Rab11_like Rab11-like. 52.7 82 0.0018 22.4 7.1 48 65-116 70-117 (165)
218 cd01080 NAD_bind_m-THF_DH_Cycl 52.3 47 0.001 24.7 5.4 18 65-82 82-99 (168)
219 TIGR03682 arCOG04112 arCOG0411 51.5 54 0.0012 27.1 6.1 43 3-46 213-256 (308)
220 PRK08939 primosomal protein Dn 51.4 14 0.00031 30.4 2.7 67 4-77 157-224 (306)
221 PRK14189 bifunctional 5,10-met 51.2 1.4E+02 0.0029 24.5 11.5 39 4-43 34-72 (285)
222 PRK11200 grxA glutaredoxin 1; 51.1 55 0.0012 20.8 5.0 39 4-42 2-40 (85)
223 cd03134 GATase1_PfpI_like A ty 50.8 92 0.002 22.4 7.1 97 4-116 1-103 (165)
224 cd03030 GRX_SH3BGR Glutaredoxi 50.7 54 0.0012 21.7 5.0 36 6-42 2-40 (92)
225 PF02153 PDH: Prephenate dehyd 50.7 1.3E+02 0.0027 24.0 8.8 27 65-97 40-66 (258)
226 cd01452 VWA_26S_proteasome_sub 50.7 39 0.00084 25.7 4.8 38 4-42 109-146 (187)
227 COG1736 DPH2 Diphthamide synth 50.5 64 0.0014 27.2 6.3 43 3-46 238-281 (347)
228 PRK08116 hypothetical protein; 50.4 90 0.0019 25.1 7.1 36 5-42 116-152 (268)
229 PRK10026 arsenate reductase; P 50.2 48 0.001 24.0 5.0 37 3-45 2-39 (141)
230 PF07881 Fucose_iso_N1: L-fuco 50.2 70 0.0015 23.9 5.8 114 3-142 4-133 (171)
231 PRK01966 ddl D-alanyl-alanine 50.1 42 0.00091 27.8 5.3 41 2-43 3-46 (333)
232 PRK13337 putative lipid kinase 50.1 1.1E+02 0.0023 25.0 7.6 40 2-42 1-42 (304)
233 PF02780 Transketolase_C: Tran 50.0 28 0.0006 24.1 3.7 73 4-95 11-86 (124)
234 PF02593 dTMP_synthase: Thymid 49.8 1.2E+02 0.0027 23.7 10.0 106 7-144 2-109 (217)
235 PRK14325 (dimethylallyl)adenos 49.8 80 0.0017 27.4 7.2 24 1-24 2-28 (444)
236 cd06388 PBP1_iGluR_AMPA_GluR4 49.8 76 0.0016 26.7 6.9 37 3-42 125-161 (371)
237 PRK14619 NAD(P)H-dependent gly 49.2 1.4E+02 0.0031 24.2 10.7 62 4-96 6-67 (308)
238 PF00071 Ras: Ras family; Int 49.1 42 0.00092 23.8 4.7 74 66-143 67-140 (162)
239 PLN02335 anthranilate synthase 49.1 82 0.0018 24.5 6.5 32 4-41 20-51 (222)
240 TIGR00465 ilvC ketol-acid redu 49.0 1.5E+02 0.0033 24.5 9.0 16 66-81 55-70 (314)
241 PRK14618 NAD(P)H-dependent gly 48.9 1.5E+02 0.0032 24.3 10.0 25 66-96 70-94 (328)
242 PRK08591 acetyl-CoA carboxylas 48.6 33 0.00072 29.6 4.7 34 1-41 1-34 (451)
243 PRK14187 bifunctional 5,10-met 48.6 1.5E+02 0.0033 24.3 11.1 39 4-43 34-72 (294)
244 cd03805 GT1_ALG2_like This fam 48.3 32 0.0007 28.5 4.5 36 4-40 2-38 (392)
245 PRK05670 anthranilate synthase 48.2 1.2E+02 0.0025 22.8 8.4 32 5-42 2-33 (189)
246 PRK13181 hisH imidazole glycer 48.0 56 0.0012 24.8 5.4 45 5-79 2-46 (199)
247 TIGR01692 HIBADH 3-hydroxyisob 47.8 1.5E+02 0.0032 23.9 9.5 108 19-147 7-117 (288)
248 PRK03372 ppnK inorganic polyph 47.8 47 0.001 27.4 5.2 37 2-39 5-41 (306)
249 PF04127 DFP: DNA / pantothena 47.8 9.2 0.0002 29.1 1.0 83 3-86 4-98 (185)
250 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 47.7 1E+02 0.0022 22.0 7.4 47 66-116 70-116 (166)
251 cd01864 Rab19 Rab19 subfamily. 47.6 36 0.00079 24.4 4.2 47 66-116 71-117 (165)
252 COG0386 BtuE Glutathione perox 47.5 53 0.0012 24.3 4.8 43 104-146 22-65 (162)
253 TIGR00412 redox_disulf_2 small 47.1 68 0.0015 20.1 4.9 37 4-42 2-38 (76)
254 PF13344 Hydrolase_6: Haloacid 46.8 17 0.00037 24.4 2.1 56 70-142 4-59 (101)
255 PF09314 DUF1972: Domain of un 46.5 1.3E+02 0.0028 22.9 10.5 60 2-80 1-65 (185)
256 PRK11892 pyruvate dehydrogenas 46.5 1.4E+02 0.003 26.2 8.1 69 13-95 348-417 (464)
257 CHL00197 carA carbamoyl-phosph 46.3 82 0.0018 26.9 6.5 29 4-40 194-222 (382)
258 KOG2728 Uncharacterized conser 46.3 32 0.00068 27.6 3.7 34 79-118 8-41 (302)
259 PF13460 NAD_binding_10: NADH( 46.1 35 0.00075 25.0 3.9 32 65-97 55-86 (183)
260 TIGR02654 circ_KaiB circadian 45.7 27 0.00058 23.1 2.8 68 6-96 6-76 (87)
261 PTZ00182 3-methyl-2-oxobutanat 45.4 1.5E+02 0.0032 25.0 7.9 69 13-95 241-310 (355)
262 TIGR00872 gnd_rel 6-phosphoglu 45.3 1.7E+02 0.0036 23.8 8.6 118 4-147 2-120 (298)
263 PLN02605 monogalactosyldiacylg 45.3 36 0.00079 28.6 4.3 38 5-43 1-41 (382)
264 PRK14186 bifunctional 5,10-met 45.2 1.7E+02 0.0038 24.0 11.4 39 4-43 34-72 (297)
265 PF11382 DUF3186: Protein of u 45.0 46 0.001 27.4 4.7 51 90-144 66-116 (308)
266 PLN02347 GMP synthetase 44.9 2.1E+02 0.0047 25.6 9.1 33 3-41 11-43 (536)
267 PRK14175 bifunctional 5,10-met 44.7 1.7E+02 0.0038 23.9 10.7 39 4-43 34-72 (286)
268 TIGR01501 MthylAspMutase methy 44.6 1.2E+02 0.0025 21.8 11.5 108 7-140 4-112 (134)
269 COG0394 Wzb Protein-tyrosine-p 43.9 37 0.00081 24.4 3.6 28 1-29 1-28 (139)
270 PF02595 Gly_kinase: Glycerate 43.8 42 0.00091 28.6 4.4 40 4-43 2-44 (377)
271 cd01740 GATase1_FGAR_AT Type 1 43.6 1.4E+02 0.0031 23.4 7.2 30 32-79 23-52 (238)
272 COG2044 Predicted peroxiredoxi 43.4 76 0.0016 22.4 4.9 41 1-42 1-43 (120)
273 PF11965 DUF3479: Domain of un 43.3 85 0.0018 23.4 5.5 76 4-94 2-80 (164)
274 cd03140 GATase1_PfpI_3 Type 1 43.1 40 0.00086 24.8 3.8 41 69-116 59-100 (170)
275 PF10662 PduV-EutP: Ethanolami 42.9 1.2E+02 0.0026 22.0 6.1 23 2-25 1-23 (143)
276 PRK03708 ppnK inorganic polyph 42.9 57 0.0012 26.4 4.9 35 4-39 2-36 (277)
277 PRK10474 putative PTS system f 42.9 74 0.0016 20.8 4.7 37 64-117 32-68 (88)
278 PRK02649 ppnK inorganic polyph 42.7 59 0.0013 26.8 5.0 37 2-39 1-37 (305)
279 PF00763 THF_DHG_CYH: Tetrahyd 42.5 1.1E+02 0.0025 21.1 7.3 67 4-84 31-101 (117)
280 TIGR01133 murG undecaprenyldip 42.4 43 0.00094 27.2 4.3 34 4-39 2-35 (348)
281 PRK13265 glycine/sarcosine/bet 42.3 98 0.0021 22.4 5.3 63 104-192 3-65 (154)
282 PRK14190 bifunctional 5,10-met 42.3 1.9E+02 0.0041 23.6 11.2 39 4-43 34-72 (284)
283 cd04158 ARD1 ARD1 subfamily. 42.2 1.3E+02 0.0028 21.7 6.5 48 66-116 62-109 (169)
284 cd04108 Rab36_Rab34 Rab34/Rab3 42.0 75 0.0016 23.1 5.2 91 4-96 2-98 (170)
285 TIGR00272 DPH2 diphthamide bio 42.0 84 0.0018 27.9 6.1 45 3-48 282-327 (496)
286 PRK14177 bifunctional 5,10-met 41.9 1.9E+02 0.0042 23.6 12.4 39 4-43 35-73 (284)
287 cd06578 HemD Uroporphyrinogen- 41.9 1.3E+02 0.0028 22.8 6.8 73 20-114 10-85 (239)
288 PRK09301 circadian clock prote 41.8 31 0.00066 23.6 2.7 69 5-96 8-79 (103)
289 PRK06835 DNA replication prote 41.7 33 0.00072 28.6 3.5 69 4-77 184-253 (329)
290 PRK08118 topology modulation p 41.7 40 0.00086 24.9 3.6 26 2-28 1-26 (167)
291 PF00496 SBP_bac_5: Bacterial 41.7 1.2E+02 0.0027 24.9 7.0 72 5-93 296-367 (374)
292 COG2210 Peroxiredoxin family p 41.6 92 0.002 22.5 5.2 39 1-40 1-39 (137)
293 PF07991 IlvN: Acetohydroxy ac 41.5 55 0.0012 24.4 4.2 64 3-80 5-70 (165)
294 PRK05678 succinyl-CoA syntheta 41.5 2E+02 0.0043 23.6 10.1 65 65-146 57-124 (291)
295 PF09651 Cas_APE2256: CRISPR-a 40.9 68 0.0015 22.9 4.6 37 5-42 24-60 (136)
296 PRK05642 DNA replication initi 40.7 73 0.0016 24.9 5.1 37 4-42 46-83 (234)
297 PRK14169 bifunctional 5,10-met 40.6 2E+02 0.0044 23.5 11.6 39 4-43 32-70 (282)
298 PRK00758 GMP synthase subunit 40.6 1.3E+02 0.0028 22.4 6.3 30 5-40 2-31 (184)
299 cd04116 Rab9 Rab9 subfamily. 40.5 70 0.0015 22.9 4.8 51 66-116 73-123 (170)
300 PRK13142 hisH imidazole glycer 40.3 85 0.0018 24.0 5.2 45 5-79 2-46 (192)
301 COG0047 PurL Phosphoribosylfor 40.2 92 0.002 24.6 5.4 38 1-43 1-38 (231)
302 PRK08181 transposase; Validate 40.1 26 0.00057 28.3 2.5 67 5-78 108-175 (269)
303 cd04106 Rab23_lke Rab23-like s 40.0 1.3E+02 0.0028 21.1 7.4 47 65-116 69-115 (162)
304 PLN02968 Probable N-acetyl-gam 39.6 1.2E+02 0.0027 25.8 6.6 15 66-80 100-114 (381)
305 TIGR02069 cyanophycinase cyano 39.6 1.5E+02 0.0032 23.6 6.8 60 4-78 30-90 (250)
306 PRK07567 glutamine amidotransf 39.6 1.8E+02 0.0039 23.0 7.2 13 67-79 48-60 (242)
307 TIGR01019 sucCoAalpha succinyl 39.5 2.1E+02 0.0046 23.4 10.3 106 14-146 13-122 (286)
308 cd01865 Rab3 Rab3 subfamily. 39.2 69 0.0015 23.0 4.6 48 65-116 68-115 (165)
309 PRK10638 glutaredoxin 3; Provi 39.2 95 0.0021 19.6 4.7 35 2-42 1-36 (83)
310 PRK12490 6-phosphogluconate de 39.0 2.1E+02 0.0045 23.2 9.1 62 71-147 60-121 (299)
311 TIGR03521 GldG gliding-associa 39.0 2.1E+02 0.0045 25.7 8.3 71 65-144 229-309 (552)
312 cd03820 GT1_amsD_like This fam 38.9 68 0.0015 25.2 4.9 39 4-43 1-41 (348)
313 cd03141 GATase1_Hsp31_like Typ 38.8 39 0.00084 26.2 3.3 43 67-116 87-132 (221)
314 PRK10342 glycerate kinase I; P 38.7 70 0.0015 27.3 4.9 39 4-42 2-43 (381)
315 cd04117 Rab15 Rab15 subfamily. 38.2 1.2E+02 0.0026 21.7 5.7 48 65-116 67-114 (161)
316 cd03067 PDI_b_PDIR_N PDIb fami 38.1 1.1E+02 0.0024 21.0 4.9 46 3-50 20-68 (112)
317 PRK07417 arogenate dehydrogena 38.0 1.5E+02 0.0033 23.7 6.8 66 4-80 2-67 (279)
318 PRK04539 ppnK inorganic polyph 37.8 72 0.0016 26.2 4.8 36 2-38 5-40 (296)
319 cd04107 Rab32_Rab38 Rab38/Rab3 37.7 1.3E+02 0.0027 22.6 5.9 52 65-116 68-119 (201)
320 PF02662 FlpD: Methyl-viologen 37.5 1.4E+02 0.0031 20.9 9.4 63 69-138 51-124 (124)
321 PRK06774 para-aminobenzoate sy 37.5 1.7E+02 0.0036 22.0 6.5 32 5-42 2-33 (191)
322 PRK10853 putative reductase; P 37.5 76 0.0016 22.1 4.3 35 6-45 2-37 (118)
323 PRK06111 acetyl-CoA carboxylas 37.2 2.7E+02 0.0058 23.9 8.7 34 1-41 1-34 (450)
324 TIGR00130 frhD coenzyme F420-r 37.1 1.6E+02 0.0035 21.3 6.8 74 2-91 2-81 (153)
325 PRK03995 hypothetical protein; 37.1 1.3E+02 0.0028 24.3 6.1 23 5-27 3-25 (267)
326 PRK00211 sulfur relay protein 37.0 97 0.0021 21.6 4.8 39 2-42 1-42 (119)
327 COG1393 ArsC Arsenate reductas 36.9 90 0.0019 21.8 4.5 35 6-45 3-38 (117)
328 PLN03049 pyridoxine (pyridoxam 36.9 2.4E+02 0.0052 24.8 8.1 88 3-97 60-158 (462)
329 cd04113 Rab4 Rab4 subfamily. 36.9 1.5E+02 0.0032 20.9 7.3 47 66-116 68-114 (161)
330 cd06312 PBP1_ABC_sugar_binding 36.9 2E+02 0.0043 22.3 9.0 38 4-42 1-40 (271)
331 PRK14176 bifunctional 5,10-met 36.8 2.4E+02 0.0051 23.1 11.0 39 4-43 40-78 (287)
332 PRK07206 hypothetical protein; 36.7 48 0.001 28.2 3.8 34 1-41 1-34 (416)
333 PF02882 THF_DHG_CYH_C: Tetrah 36.7 1.4E+02 0.003 22.1 5.7 56 3-83 37-92 (160)
334 COG1435 Tdk Thymidine kinase [ 36.6 87 0.0019 24.2 4.7 37 2-40 3-40 (201)
335 PRK06761 hypothetical protein; 36.4 79 0.0017 25.8 4.8 37 1-39 1-38 (282)
336 PHA03075 glutaredoxin-like pro 36.2 79 0.0017 22.2 4.0 27 2-29 1-28 (123)
337 PF04908 SH3BGR: SH3-binding, 35.8 1.2E+02 0.0025 20.5 4.8 38 4-42 2-41 (99)
338 cd02973 TRX_GRX_like Thioredox 35.8 97 0.0021 18.4 4.7 39 4-42 2-40 (67)
339 PRK09932 glycerate kinase II; 35.6 86 0.0019 26.8 5.0 39 4-42 2-43 (381)
340 PRK09393 ftrA transcriptional 35.6 56 0.0012 26.8 3.9 44 66-116 71-115 (322)
341 PRK10466 hybD hydrogenase 2 ma 35.5 1.4E+02 0.003 22.0 5.6 67 4-89 2-74 (164)
342 PRK08057 cobalt-precorrin-6x r 35.4 30 0.00066 27.6 2.2 22 1-24 1-22 (248)
343 PLN02958 diacylglycerol kinase 35.4 1.9E+02 0.0041 25.5 7.3 39 2-41 111-152 (481)
344 cd04120 Rab12 Rab12 subfamily. 35.3 1.2E+02 0.0026 23.1 5.4 48 65-116 67-114 (202)
345 KOG0524 Pyruvate dehydrogenase 35.2 2.3E+02 0.0049 23.3 7.0 75 4-96 238-319 (359)
346 cd01743 GATase1_Anthranilate_S 35.1 1.9E+02 0.004 21.5 6.9 42 16-80 11-53 (184)
347 PRK11863 N-acetyl-gamma-glutam 34.8 1.1E+02 0.0024 25.3 5.5 35 1-42 1-35 (313)
348 PF01820 Dala_Dala_lig_N: D-al 34.8 1.2E+02 0.0026 20.9 5.0 41 3-44 1-44 (117)
349 TIGR01505 tartro_sem_red 2-hyd 34.7 2.4E+02 0.0052 22.6 9.2 110 19-146 10-119 (291)
350 COG0518 GuaA GMP synthase - Gl 34.7 2.1E+02 0.0046 21.9 8.0 21 3-24 2-22 (198)
351 COG2085 Predicted dinucleotide 34.5 2.2E+02 0.0048 22.2 8.3 30 65-96 55-84 (211)
352 cd04951 GT1_WbdM_like This fam 34.5 80 0.0017 25.4 4.7 38 4-42 1-39 (360)
353 TIGR00888 guaA_Nterm GMP synth 34.3 2E+02 0.0042 21.5 7.0 24 13-41 8-31 (188)
354 cd03138 GATase1_AraC_2 AraC tr 34.2 54 0.0012 24.5 3.4 44 66-116 65-113 (195)
355 PRK10307 putative glycosyl tra 34.1 69 0.0015 27.0 4.3 37 4-41 2-41 (412)
356 PRK05339 PEP synthetase regula 34.0 1.9E+02 0.004 23.5 6.4 40 1-43 1-42 (269)
357 COG3412 Uncharacterized protei 34.0 72 0.0016 22.7 3.6 36 1-42 1-36 (129)
358 cd04115 Rab33B_Rab33A Rab33B/R 34.0 1.3E+02 0.0027 21.7 5.3 47 67-116 72-118 (170)
359 PRK14191 bifunctional 5,10-met 33.9 2.6E+02 0.0057 22.8 10.8 39 4-43 33-71 (285)
360 PRK06893 DNA replication initi 33.7 2.2E+02 0.0049 22.0 7.3 35 5-41 41-76 (229)
361 cd04150 Arf1_5_like Arf1-Arf5- 33.5 1.1E+02 0.0023 22.0 4.8 47 67-116 64-110 (159)
362 PRK06223 malate dehydrogenase; 33.3 2.6E+02 0.0057 22.6 8.5 71 2-78 2-78 (307)
363 cd02978 KaiB_like KaiB-like fa 33.1 1.3E+02 0.0028 19.1 5.8 37 6-42 4-43 (72)
364 TIGR00035 asp_race aspartate r 33.1 2.2E+02 0.0047 22.1 6.7 134 2-143 1-147 (229)
365 PRK03378 ppnK inorganic polyph 33.0 1.1E+02 0.0023 25.2 5.0 36 2-38 5-40 (292)
366 KOG1478 3-keto sterol reductas 32.9 50 0.0011 26.8 3.0 25 1-25 1-25 (341)
367 cd01862 Rab7 Rab7 subfamily. 32.8 1.3E+02 0.0029 21.3 5.2 51 66-116 68-118 (172)
368 PF13439 Glyco_transf_4: Glyco 32.8 82 0.0018 22.2 4.1 30 12-42 10-39 (177)
369 PRK14866 hypothetical protein; 32.6 1.2E+02 0.0025 26.7 5.3 24 4-27 2-25 (451)
370 cd06386 PBP1_NPR_C_like Ligand 32.5 2.8E+02 0.006 23.3 7.7 37 3-40 138-176 (387)
371 COG0680 HyaD Ni,Fe-hydrogenase 32.5 2.1E+02 0.0045 21.2 6.3 69 3-90 2-75 (160)
372 cd06259 YdcF-like YdcF-like. Y 32.4 1.4E+02 0.003 21.1 5.2 63 73-139 3-65 (150)
373 PHA01633 putative glycosyl tra 32.4 2.3E+02 0.0051 23.6 7.1 78 4-118 2-79 (335)
374 PRK07952 DNA replication prote 32.4 1.1E+02 0.0024 24.2 5.0 71 5-81 101-173 (244)
375 cd04955 GT1_like_6 This family 32.2 66 0.0014 26.0 3.8 38 4-42 1-42 (363)
376 PLN00223 ADP-ribosylation fact 32.2 90 0.0019 23.1 4.3 47 67-116 81-127 (181)
377 PRK14172 bifunctional 5,10-met 32.2 2.8E+02 0.0061 22.6 11.1 39 4-43 34-72 (278)
378 PF04392 ABC_sub_bind: ABC tra 32.2 1.2E+02 0.0027 24.3 5.4 39 3-42 132-170 (294)
379 cd03146 GAT1_Peptidase_E Type 32.1 1.7E+02 0.0037 22.5 5.9 14 65-78 75-88 (212)
380 PRK14806 bifunctional cyclohex 32.0 3.9E+02 0.0084 24.8 9.1 80 2-97 3-84 (735)
381 PRK15456 universal stress prot 31.9 1.2E+02 0.0025 21.2 4.7 40 1-42 1-41 (142)
382 PRK14568 vanB D-alanine--D-lac 31.8 1.2E+02 0.0025 25.3 5.3 39 3-42 4-45 (343)
383 PRK12419 riboflavin synthase s 31.8 1.8E+02 0.0039 21.6 5.6 38 4-42 12-53 (158)
384 COG0473 LeuB Isocitrate/isopro 31.6 1.1E+02 0.0024 25.7 4.9 22 60-81 55-76 (348)
385 cd04118 Rab24 Rab24 subfamily. 31.3 2.1E+02 0.0046 21.0 6.6 45 67-116 70-114 (193)
386 PRK13304 L-aspartate dehydroge 31.3 2.7E+02 0.0059 22.2 9.8 58 68-141 59-116 (265)
387 PRK14818 NADH dehydrogenase su 31.2 1.4E+02 0.0031 22.4 5.0 48 65-121 65-112 (173)
388 cd03129 GAT1_Peptidase_E_like 31.2 2.3E+02 0.0049 21.6 6.5 14 65-78 75-88 (210)
389 cd04141 Rit_Rin_Ric Rit/Rin/Ri 31.0 1.8E+02 0.004 21.1 5.7 49 65-116 68-116 (172)
390 cd04122 Rab14 Rab14 subfamily. 30.9 2E+02 0.0043 20.5 9.2 48 65-116 69-116 (166)
391 PF08660 Alg14: Oligosaccharid 30.8 2.3E+02 0.0049 21.1 8.1 34 81-119 70-103 (170)
392 TIGR01616 nitro_assoc nitrogen 30.8 1.3E+02 0.0029 21.2 4.6 35 6-45 3-38 (126)
393 TIGR00725 conserved hypothetic 30.6 1.1E+02 0.0023 22.6 4.3 31 2-33 1-32 (159)
394 cd00578 L-fuc_L-ara-isomerases 30.4 3.6E+02 0.0078 23.3 15.0 109 4-141 2-129 (452)
395 PF09960 DUF2194: Uncharacteri 30.4 2.4E+02 0.0052 25.7 7.2 75 4-96 55-129 (585)
396 COG0300 DltE Short-chain dehyd 30.4 2.4E+02 0.0053 22.8 6.6 23 2-24 5-27 (265)
397 cd03130 GATase1_CobB Type 1 gl 30.3 1.1E+02 0.0023 23.3 4.4 12 67-78 37-48 (198)
398 PRK13626 transcriptional regul 30.0 1.8E+02 0.004 25.9 6.5 36 5-41 405-440 (552)
399 PRK08997 isocitrate dehydrogen 30.0 1.5E+02 0.0033 24.8 5.5 73 1-82 1-76 (334)
400 cd01863 Rab18 Rab18 subfamily. 29.9 2E+02 0.0043 20.2 6.1 49 65-116 67-115 (161)
401 COG0022 AcoB Pyruvate/2-oxoglu 29.8 2.7E+02 0.006 23.1 6.8 37 5-45 203-239 (324)
402 COG0104 PurA Adenylosuccinate 29.6 63 0.0014 27.8 3.2 53 59-118 357-418 (430)
403 PF13552 DUF4127: Protein of u 29.5 2.4E+02 0.0053 25.0 7.0 31 87-121 329-359 (497)
404 PRK14175 bifunctional 5,10-met 29.3 1.4E+02 0.0031 24.4 5.2 53 3-80 159-211 (286)
405 COG5426 Uncharacterized membra 29.2 53 0.0011 25.3 2.5 62 1-77 1-76 (254)
406 PRK12361 hypothetical protein; 29.2 2.8E+02 0.006 24.8 7.5 40 1-42 241-282 (547)
407 KOG2884 26S proteasome regulat 29.2 1.4E+02 0.0031 23.5 4.8 39 4-43 109-147 (259)
408 cd06348 PBP1_ABC_ligand_bindin 29.1 3E+02 0.0064 22.3 7.2 34 3-37 137-170 (344)
409 cd04101 RabL4 RabL4 (Rab-like4 28.8 98 0.0021 21.9 3.9 46 66-116 71-116 (164)
410 cd03795 GT1_like_4 This family 28.7 1E+02 0.0022 24.8 4.4 39 4-43 1-42 (357)
411 cd05017 SIS_PGI_PMI_1 The memb 28.7 99 0.0021 21.1 3.7 30 4-35 44-73 (119)
412 PF07689 KaiB: KaiB domain; I 28.7 1.7E+02 0.0037 19.0 5.0 62 13-97 8-71 (82)
413 PRK11391 etp phosphotyrosine-p 28.6 1.1E+02 0.0023 22.1 3.9 27 1-28 1-27 (144)
414 PRK00772 3-isopropylmalate deh 28.6 1.2E+02 0.0025 25.8 4.6 23 59-81 54-79 (358)
415 PF01380 SIS: SIS domain SIS d 28.5 1.1E+02 0.0023 20.9 3.9 35 4-42 54-88 (131)
416 cd01892 Miro2 Miro2 subfamily. 28.5 2.3E+02 0.0049 20.4 7.3 45 66-116 73-117 (169)
417 COG3660 Predicted nucleoside-d 28.5 1.1E+02 0.0024 24.9 4.3 24 4-28 2-25 (329)
418 COG0041 PurE Phosphoribosylcar 28.4 1.4E+02 0.003 22.1 4.4 39 1-42 1-41 (162)
419 PRK14170 bifunctional 5,10-met 28.4 3.3E+02 0.0072 22.3 11.5 39 4-43 33-71 (284)
420 PRK14569 D-alanyl-alanine synt 28.4 1.3E+02 0.0029 24.3 4.9 38 3-41 4-44 (296)
421 COG0621 MiaB 2-methylthioadeni 28.4 3.7E+02 0.0081 23.5 7.7 30 68-97 38-67 (437)
422 cd03136 GATase1_AraC_ArgR_like 28.3 88 0.0019 23.1 3.6 43 67-116 61-104 (185)
423 PRK09273 hypothetical protein; 28.2 93 0.002 24.2 3.7 36 4-42 2-38 (211)
424 COG2072 TrkA Predicted flavopr 28.1 49 0.0011 28.7 2.4 64 69-141 131-201 (443)
425 PLN02204 diacylglycerol kinase 28.0 2.8E+02 0.0061 25.3 7.1 63 2-77 159-225 (601)
426 PRK14183 bifunctional 5,10-met 27.9 3.4E+02 0.0073 22.2 11.2 39 4-43 33-71 (281)
427 COG4551 Predicted protein tyro 27.7 22 0.00047 23.8 0.2 43 64-118 44-86 (109)
428 cd03812 GT1_CapH_like This fam 27.6 3.2E+02 0.007 21.9 8.2 39 4-43 1-40 (358)
429 cd03035 ArsC_Yffb Arsenate Red 27.5 1.5E+02 0.0032 20.1 4.3 34 7-45 2-36 (105)
430 TIGR01383 not_thiJ DJ-1 family 27.5 59 0.0013 23.8 2.6 42 68-116 61-105 (179)
431 PRK06851 hypothetical protein; 27.4 2E+02 0.0044 24.4 5.9 38 3-42 30-68 (367)
432 PRK06921 hypothetical protein; 27.4 1.2E+02 0.0027 24.2 4.5 37 4-41 118-155 (266)
433 cd00995 PBP2_NikA_DppA_OppA_li 27.3 2.6E+02 0.0056 23.7 6.8 36 5-41 325-360 (466)
434 PHA02774 E1; Provisional 27.3 1.8E+02 0.0038 26.6 5.7 70 4-96 435-507 (613)
435 PRK14077 pnk inorganic polypho 27.3 1.3E+02 0.0029 24.5 4.7 35 2-38 10-44 (287)
436 PLN02404 6,7-dimethyl-8-ribity 27.2 1.9E+02 0.0041 21.0 5.0 39 3-42 8-50 (141)
437 PRK01911 ppnK inorganic polyph 27.0 1.4E+02 0.0031 24.4 4.8 34 4-38 2-35 (292)
438 smart00177 ARF ARF-like small 26.8 2.5E+02 0.0054 20.4 7.6 47 67-116 77-123 (175)
439 PF08477 Miro: Miro-like prote 26.8 87 0.0019 20.8 3.2 47 67-115 70-116 (119)
440 PRK12491 pyrroline-5-carboxyla 26.1 2.5E+02 0.0054 22.6 6.1 15 66-80 59-73 (272)
441 PRK06455 riboflavin synthase; 26.1 2.7E+02 0.0059 20.5 10.9 96 3-120 2-104 (155)
442 PF13793 Pribosyltran_N: N-ter 26.0 1.2E+02 0.0027 20.9 3.8 20 7-29 3-22 (116)
443 PRK15453 phosphoribulokinase; 26.0 1.8E+02 0.0039 23.9 5.1 42 1-44 1-45 (290)
444 cd03808 GT1_cap1E_like This fa 26.0 1.4E+02 0.0031 23.5 4.7 38 4-43 1-38 (359)
445 smart00178 SAR Sar1p-like memb 25.9 2.7E+02 0.0058 20.4 8.0 48 66-116 80-127 (184)
446 PLN00016 RNA-binding protein; 25.9 72 0.0016 26.7 3.1 40 1-42 51-90 (378)
447 PRK14184 bifunctional 5,10-met 25.9 3.7E+02 0.0081 22.0 10.8 39 4-43 33-71 (286)
448 CHL00023 ndhK NADH dehydrogena 25.8 1.9E+02 0.0041 22.8 5.0 46 66-120 67-112 (225)
449 PRK14182 bifunctional 5,10-met 25.8 3.7E+02 0.008 22.0 12.9 40 3-43 31-70 (282)
450 TIGR00768 rimK_fam alpha-L-glu 25.6 2.2E+02 0.0047 22.3 5.7 35 4-43 1-35 (277)
451 PRK12559 transcriptional regul 25.6 1.9E+02 0.0041 20.5 4.7 34 6-44 2-36 (131)
452 PRK07178 pyruvate carboxylase 25.4 2.2E+02 0.0048 24.8 6.1 35 1-42 1-35 (472)
453 PF09314 DUF1972: Domain of un 25.3 1.3E+02 0.0028 22.9 4.0 34 108-141 2-37 (185)
454 PRK10239 2-amino-4-hydroxy-6-h 25.3 2.2E+02 0.0047 21.1 5.1 28 2-29 1-28 (159)
455 PF13477 Glyco_trans_4_2: Glyc 25.2 1.7E+02 0.0038 20.0 4.6 34 4-42 1-34 (139)
456 PRK09599 6-phosphogluconate de 25.1 3.7E+02 0.0081 21.7 10.1 62 71-147 60-121 (301)
457 PF00731 AIRC: AIR carboxylase 25.0 2.8E+02 0.0061 20.3 7.4 35 3-40 1-35 (150)
458 cd08490 PBP2_NikA_DppA_OppA_li 25.0 3.3E+02 0.0071 23.3 7.1 36 5-41 323-358 (470)
459 PRK14167 bifunctional 5,10-met 25.0 3.9E+02 0.0085 22.0 8.3 39 4-43 33-71 (297)
460 PF03618 Kinase-PPPase: Kinase 24.9 2.5E+02 0.0053 22.6 5.7 36 6-44 2-37 (255)
461 PRK07119 2-ketoisovalerate fer 24.9 2.1E+02 0.0046 24.0 5.6 27 17-44 258-284 (352)
462 cd04125 RabA_like RabA-like su 24.9 2.8E+02 0.0061 20.2 9.6 48 65-116 67-114 (188)
463 PLN02353 probable UDP-glucose 24.8 1.8E+02 0.0038 25.7 5.3 16 66-81 74-89 (473)
464 PRK08084 DNA replication initi 24.8 2.1E+02 0.0046 22.3 5.3 36 5-42 47-83 (235)
465 cd03137 GATase1_AraC_1 AraC tr 24.8 1.1E+02 0.0025 22.5 3.7 44 67-117 61-106 (187)
466 PF02602 HEM4: Uroporphyrinoge 24.8 1.2E+02 0.0025 23.3 3.8 54 24-97 133-188 (231)
467 PRK03731 aroL shikimate kinase 24.6 1E+02 0.0022 22.4 3.3 25 1-27 1-26 (171)
468 PRK09189 uroporphyrinogen-III 24.5 2.6E+02 0.0057 21.6 5.9 21 70-97 170-190 (240)
469 PF01965 DJ-1_PfpI: DJ-1/PfpI 24.5 38 0.00083 24.2 1.0 43 67-116 34-80 (147)
470 PF13587 DJ-1_PfpI_N: N-termin 24.4 57 0.0012 17.8 1.4 10 3-12 1-10 (38)
471 COG3640 CooC CO dehydrogenase 24.4 3.8E+02 0.0081 21.5 9.4 32 66-97 94-130 (255)
472 COG1821 Predicted ATP-utilizin 24.3 2.2E+02 0.0047 23.2 5.1 82 4-90 2-93 (307)
473 cd04140 ARHI_like ARHI subfami 24.2 2.7E+02 0.0058 19.8 7.5 50 66-116 68-117 (165)
474 cd06302 PBP1_LsrB_Quorum_Sensi 24.1 3.7E+02 0.008 21.3 9.3 33 5-38 2-35 (298)
475 PRK14025 multifunctional 3-iso 24.1 1.4E+02 0.0029 25.1 4.2 85 3-96 2-87 (330)
476 cd04161 Arl2l1_Arl13_like Arl2 23.9 1.9E+02 0.0041 20.8 4.7 49 66-117 62-110 (167)
477 COG0296 GlgB 1,4-alpha-glucan 23.9 2.9E+02 0.0063 25.4 6.5 62 15-97 162-224 (628)
478 cd04147 Ras_dva Ras-dva subfam 23.9 3.1E+02 0.0067 20.4 8.4 47 67-116 67-113 (198)
479 COG0054 RibH Riboflavin syntha 23.9 2.9E+02 0.0063 20.3 5.4 39 4-43 14-56 (152)
480 PTZ00132 GTP-binding nuclear p 23.9 3.2E+02 0.0069 20.6 7.0 44 67-115 78-121 (215)
481 PF01750 HycI: Hydrogenase mat 23.7 1.3E+02 0.0029 20.9 3.7 54 18-90 2-55 (130)
482 CHL00194 ycf39 Ycf39; Provisio 23.7 2.3E+02 0.0051 22.9 5.6 17 65-81 59-75 (317)
483 PLN00123 isocitrate dehydrogen 23.7 4.6E+02 0.01 22.3 7.4 77 4-96 32-115 (360)
484 cd03811 GT1_WabH_like This fam 23.6 1.3E+02 0.0029 23.5 4.1 39 4-43 1-40 (353)
485 TIGR00014 arsC arsenate reduct 23.6 1.9E+02 0.0042 19.7 4.4 34 7-45 2-36 (114)
486 COG1763 MobB Molybdopterin-gua 23.5 2.2E+02 0.0047 21.1 4.8 85 1-97 1-90 (161)
487 PF05368 NmrA: NmrA-like famil 23.5 1.2E+02 0.0026 23.2 3.8 47 65-118 59-105 (233)
488 cd03148 GATase1_EcHsp31_like T 23.4 85 0.0018 24.7 2.8 29 68-96 94-125 (232)
489 TIGR00114 lumazine-synth 6,7-d 23.3 2.6E+02 0.0055 20.2 5.0 38 4-42 2-43 (138)
490 PRK09982 universal stress prot 23.2 2.5E+02 0.0053 19.7 5.1 37 3-42 4-41 (142)
491 PRK03673 hypothetical protein; 23.2 3.7E+02 0.008 23.1 6.8 45 1-47 1-49 (396)
492 PRK08219 short chain dehydroge 23.2 1.1E+02 0.0024 23.0 3.4 26 1-26 1-26 (227)
493 PLN02225 1-deoxy-D-xylulose-5- 23.2 5.6E+02 0.012 24.0 8.2 70 13-96 575-644 (701)
494 PF03960 ArsC: ArsC family; I 23.2 1.7E+02 0.0038 19.7 4.1 32 9-45 1-33 (110)
495 PRK13526 glutamine amidotransf 23.2 2.2E+02 0.0048 21.5 4.9 14 65-78 34-47 (179)
496 PRK12439 NAD(P)H-dependent gly 23.1 3.6E+02 0.0078 22.4 6.7 26 66-97 73-98 (341)
497 cd06339 PBP1_YraM_LppC_lipopro 23.1 3.1E+02 0.0068 22.4 6.3 32 3-36 125-156 (336)
498 PF00465 Fe-ADH: Iron-containi 23.1 2.7E+02 0.0058 23.3 6.0 34 4-39 23-56 (366)
499 COG0426 FpaA Uncharacterized f 23.0 2.8E+02 0.006 23.9 5.9 56 78-141 223-278 (388)
500 cd02072 Glm_B12_BD B12 binding 23.0 2.9E+02 0.0062 19.6 10.8 73 7-97 2-75 (128)
No 1
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-37 Score=240.26 Aligned_cols=199 Identities=53% Similarity=0.856 Sum_probs=166.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| ||+|||+|++|||++||+.+++++++..|++++++++.+..+.++...+.+......+....+++.+||+||||||+
T Consensus 1 M~-kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPt 79 (200)
T PRK03767 1 MA-KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPT 79 (200)
T ss_pred CC-eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecc
Confidence 65 99999999999999999999999986238999999998766666655444333223333347899999999999999
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|++++|+++|+|+|++..+|..+.+.||++++|+++||..++...++..+...|..+||.+++.++.+... ......++
T Consensus 80 y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~~~~~-~~~~~~~~ 158 (200)
T PRK03767 80 RFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAFQGQ-MDVDEVTG 158 (200)
T ss_pred cCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCccccc-cccccccC
Confidence 99999999999999998777666899999999999999777777778888899999999999988876532 11223467
Q ss_pred CCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 161 GSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 161 ~~~~g~~~~~~-~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
|++||...+.+ +++.+|+++|++.|+.+|+++++.++++++
T Consensus 159 g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 159 GSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999986 788899999999999999999999999864
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=3.8e-37 Score=236.62 Aligned_cols=195 Identities=51% Similarity=0.840 Sum_probs=167.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+|||+|++|||++||+.|++++++..|++++++++.+..+++++.+..+...++.|....+++.+||+||||||+|++
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~g 81 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRFG 81 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccccc
Confidence 89999999999999999999999976338899999998877777776554444444555556789999999999999999
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSP 163 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (203)
+++++||+|+|++..+|....+.||++++|+++||..++.+.++..+...|.++||.+++.++.++. .......+++++
T Consensus 82 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~~~~-~~~~~~~~gg~~ 160 (197)
T TIGR01755 82 NMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYAAQE-QMGVDEVRGGSP 160 (197)
T ss_pred CccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCccccc-ccccccccCCCC
Confidence 9999999999999887766689999999999999987777777888889999999999999887642 233344578999
Q ss_pred CccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 164 YGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 164 ~g~~~~~~-~~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
||...+.+ +++.+|++.|++.|+.+|+++++.+++|
T Consensus 161 ~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 161 YGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred cceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999987 7888999999999999999999999875
No 3
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=213.78 Aligned_cols=199 Identities=73% Similarity=1.113 Sum_probs=186.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCC-CCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKS-DVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|.||.||++|.+|+-..||+++.++++..+| +++++.+++..++.++..+...+++ +.|.++.+.|.+||+++||.|+
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~g-eA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGG-EATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCC-eeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 4799999999999999999999999998755 9999999999888899988888875 7899899999999999999999
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC-CCCCCCcccccc
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT-FGAGMSEMEKVK 159 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~-~~~~~~~~~~~~ 159 (203)
.+|.+|+++|.|+|+...+|..+.|.||++++|.+.|..+|+++.++.+....|.++||++||.+|. ++-++.++++++
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~ 159 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVH 159 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999888899998999999999999999999998 555788899999
Q ss_pred CCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 160 GGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 160 ~~~~~g~~~~~~-~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
++++||++.+++ ||++.|++.+++.++..|+.+++.++++.+
T Consensus 160 Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 160 GGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred CCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999865
No 4
>PRK05569 flavodoxin; Provisional
Probab=99.95 E-value=9.2e-27 Score=170.11 Aligned_cols=138 Identities=28% Similarity=0.320 Sum_probs=114.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++++++ .|++++++++.+.+ ..++.+||.||||||+|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~~--------------------~~~~~~~d~iilgsPty 59 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKE-AGAEVTIKHVADAK--------------------VEDVLEADAVAFGSPSM 59 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHh-CCCeEEEEECCcCC--------------------HHHHhhCCEEEEECCCc
Confidence 4699999999999999999999999987 48899999887642 34789999999999999
Q ss_pred CCCc--HHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 82 FGMM--AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 82 ~~~~--~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
++++ |++++.|+|++... .++||++++|+|+||..+. .+..+.+.+...|+.+++. +. ++
T Consensus 60 ~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~g~~~~~~-~~----------~~ 121 (141)
T PRK05569 60 DNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDNGE---FMKLWKDRMKDYGFNVIGD-LA----------VN 121 (141)
T ss_pred CCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHCCCeEeee-EE----------Ec
Confidence 9885 47899999998532 4689999999999986433 2455677888889998764 22 22
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 193 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 193 (203)
+.|+++++++|++||++|+
T Consensus 122 ---------------~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 122 ---------------ESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999986
No 5
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=179.24 Aligned_cols=195 Identities=39% Similarity=0.560 Sum_probs=150.0
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC------CCCCCCCChhhhhccCeEE
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP------KSDVPTITPNELAEADGIL 75 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~aD~ii 75 (203)
|++.|++|+ +|||..+++++++++++. |+|++++++.+..+.+|..+..|+. ++|......+++.+||+||
T Consensus 2 ki~~I~gs~r~~G~t~~l~~~~~~g~~~~-G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 2 KILGINGSPRSNGNTAKLAEAVLEGAEEA-GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHHc-CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 788888887 599999999999999995 9999999999987777665544432 2232223467899999999
Q ss_pred EecccCCCCcHHHHHHHHHH-hcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCc
Q 028847 76 LGFPTRFGMMAAQFKAFLDA-TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSE 154 (203)
Q Consensus 76 igsP~y~~~~~~~lk~fld~-~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~ 154 (203)
||||+|++++|++||+|||| ...+|....+++|+.+.|++.+..+++++.++..+...+.++++.+++.++...+.-..
T Consensus 81 ~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~ 160 (207)
T COG0655 81 FGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGNAVVGSG 160 (207)
T ss_pred EeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEecccccccccCcc
Confidence 99999999999999999999 66666667899999999999988777776568888899999999999988763221001
Q ss_pred cccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 155 MEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
...+..+.++|....+......+.+.+++-++.+++..++...++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
T COG0655 161 VDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKL 205 (207)
T ss_pred cccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhh
Confidence 112556777877776653223367777888888888877766654
No 6
>PRK05568 flavodoxin; Provisional
Probab=99.95 E-value=2.2e-26 Score=168.27 Aligned_cols=139 Identities=25% Similarity=0.345 Sum_probs=116.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++++++ .|++++++++.+.+ ..++.+||.||||+|+|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~~--------------------~~~~~~~d~iilgsp~y 59 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKE-NGAEVKLLNVSEAS--------------------VDDVKGADVVALGSPAM 59 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEECCCCC--------------------HHHHHhCCEEEEECCcc
Confidence 4699999999999999999999999987 48999999988743 34789999999999999
Q ss_pred CCCcH--HHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 82 FGMMA--AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 82 ~~~~~--~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+++++ +.++.|++++. ..++||++++|+|+||..+. ....+.+.|...|+++++.++. ++
T Consensus 60 ~~~~~~~~~~~~f~~~~~-----~~~~~k~~~~f~t~G~~~~~---~~~~~~~~l~~~g~~~~~~~~~----------~~ 121 (142)
T PRK05568 60 GDEVLEEGEMEPFVESIS-----SLVKGKKLVLFGSYGWGDGE---WMRDWVERMEGYGANLVNEGLI----------VN 121 (142)
T ss_pred CcccccchhHHHHHHHhh-----hhhCCCEEEEEEccCCCCCh---HHHHHHHHHHHCCCEEeCCcEE----------Ee
Confidence 99874 68999999984 25689999999999885332 2455777888899999887543 22
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
+.|+++++++|+++|++|++
T Consensus 122 ---------------~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 122 ---------------NTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999874
No 7
>PRK06756 flavodoxin; Provisional
Probab=99.95 E-value=2.7e-26 Score=169.00 Aligned_cols=145 Identities=26% Similarity=0.337 Sum_probs=119.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|||+|.+|||+++|+.|++++++ .|++++++++.+.+ ...++.++|.||||+|+
T Consensus 1 mm-kv~IiY~S~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~~-------------------~~~~~~~~d~vi~gspt 59 (148)
T PRK06756 1 MS-KLVMIFASMSGNTEEMADHIAGVIRE-TENEIEVIDIMDSP-------------------EASILEQYDGIILGAYT 59 (148)
T ss_pred Cc-eEEEEEECCCchHHHHHHHHHHHHhh-cCCeEEEeehhccC-------------------CHHHHhcCCeEEEEeCC
Confidence 55 99999999999999999999999987 48899999886532 13478899999999999
Q ss_pred CC-CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 81 RF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 81 y~-~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
|+ +.+|..++.|++.+.. ..++||++++|+++++.++....++..+.+.|.+.|+.+++.++. ++
T Consensus 60 ~~~g~~p~~~~~fl~~l~~----~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~----------~~ 125 (148)
T PRK06756 60 WGDGDLPDDFLDFYDAMDS----IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLK----------VE 125 (148)
T ss_pred CCCCCCcHHHHHHHHHHhc----CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeE----------Ee
Confidence 96 7788899999999853 268999999999977643322334677888999999999987654 22
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
+.|+++|++++++||++|++.
T Consensus 126 ---------------~~p~~~d~~~~~~~~~~~~~~ 146 (148)
T PRK06756 126 ---------------LTPEDEDVEKCLQFGAEFVKH 146 (148)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999764
No 8
>PRK06703 flavodoxin; Provisional
Probab=99.94 E-value=4.6e-25 Score=162.92 Aligned_cols=148 Identities=24% Similarity=0.256 Sum_probs=121.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|+|+|.+|||+.+|+.|++.+++ .|++++++++.+.+ ..++.++|.|||++|+
T Consensus 1 mm-kv~IiY~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~viigspt 58 (151)
T PRK06703 1 MA-KILIAYASMSGNTEDIADLIKVSLDA-FDHEVVLQEMDGMD--------------------AEELLAYDGIILGSYT 58 (151)
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHHHh-cCCceEEEehhhCC--------------------HHHHhcCCcEEEEECC
Confidence 65 99999999999999999999999988 48899999887632 3468899999999999
Q ss_pred C-CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 81 R-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 81 y-~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
| .+.+|..++.|++++.. ..+++|++++|+++++..+........+.+.|.+.|+.+++.++.+ .
T Consensus 59 ~~~g~~p~~~~~f~~~l~~----~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~----------~ 124 (151)
T PRK06703 59 WGDGDLPYEAEDFHEDLEN----IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKI----------E 124 (151)
T ss_pred CCCCcCcHHHHHHHHHHhc----CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEE----------e
Confidence 9 57888899999998853 2678999999999988543222335667888999999998876542 1
Q ss_pred CCCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 028847 160 GGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~-~~~~~~~~~~g~~l~~~~~~~ 199 (203)
..|+ +++++++++++++|++.++++
T Consensus 125 ---------------~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 125 ---------------LAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred ---------------cCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 4675 789999999999999887765
No 9
>PRK06242 flavodoxin; Provisional
Probab=99.93 E-value=7e-25 Score=161.71 Aligned_cols=146 Identities=24% Similarity=0.266 Sum_probs=111.7
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|++|||+|. +|||+++|+.|++.++ ++++++.+. ..+++.+||.||||+|+|+
T Consensus 2 k~~IiY~S~~tGnT~~~A~~ia~~l~------~~~~~i~~~--------------------~~~~~~~~d~ii~g~pvy~ 55 (150)
T PRK06242 2 KALIVYASVHHGNTEKIAKAIAEVLD------AEVIDPGDV--------------------NPEDLSEYDLIGFGSGIYF 55 (150)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhcC------cEEecHHHC--------------------CcccHhHCCEEEEeCchhc
Confidence 899999998 7999999999999883 345665432 1247889999999999999
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+++|+.++.|++++. .+.||++++|+|+|+.+++. ...+...+...|+.+++.....+. .
T Consensus 56 ~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~~~~g~-----------~ 115 (150)
T PRK06242 56 GKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEFSCKGF-----------D 115 (150)
T ss_pred CCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEEecCCc-----------c
Confidence 999999999999984 45899999999999865432 456778888899999876433221 1
Q ss_pred CCccceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 163 PYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 163 ~~g~~~~~~-~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
.++.....+ .+.++|+++++++|+++|++|++.
T Consensus 116 ~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 116 TFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred cccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 122211111 234689999999999999999753
No 10
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.92 E-value=5.7e-24 Score=154.85 Aligned_cols=138 Identities=26% Similarity=0.340 Sum_probs=113.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM 84 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
|+|+|+|++|||+++|+.|++++.+ .|++++++++.+.. ..++.++|.||||+|+|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~iilgspty~~g 59 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKE-AGAEVDLLEVADAD--------------------AEDLLSYDAVLLGCSTWGDE 59 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHh-cCCeEEEEEcccCC--------------------HHHHhcCCEEEEEcCCCCCC
Confidence 5899999999999999999999988 48899999987642 34788899999999999855
Q ss_pred -cH-HHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 85 -MA-AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 85 -~~-~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+| +.++.|++++.. ..++||++++|+++|+.+. ...+...+...|...|+.+++.++. +.
T Consensus 60 ~~p~~~~~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~----------~~--- 121 (140)
T TIGR01753 60 DLEQDDFEPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLK----------VD--- 121 (140)
T ss_pred CCCcchHHHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCee----------ee---
Confidence 76 899999999853 2579999999999988542 2234666778888899999877543 11
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028847 163 PYGAGTFAGDGSRQPSELELAQAFHQGKYFA 193 (203)
Q Consensus 163 ~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 193 (203)
..|++++++++++|+++|+
T Consensus 122 ------------~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 122 ------------GDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred ------------cCCCHHHHHHHHHHHHHhC
Confidence 5799999999999999873
No 11
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.92 E-value=3.5e-24 Score=180.84 Aligned_cols=145 Identities=25% Similarity=0.325 Sum_probs=122.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhh--ccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAA--SVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
++||+|||+|++|||++||+.|+++++ . .|++|+++++.+.++.++ ..++.+||+||||||
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~~~~i----------------~~~~~~~d~ii~Gsp 309 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSDKNDI----------------ITEVFKSKAILVGSS 309 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCCHHHH----------------HHHHHhCCEEEEECC
Confidence 368999999999999999999999998 5 589999999988655443 236778999999999
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+|++++.+.++.|++.+... .++||++++|+++||.+++ +..+.+.|...|+.+++.++.+ +
T Consensus 310 T~~~~~~~~~~~~l~~l~~~----~~~~K~~a~FGsygw~g~a----~~~~~~~l~~~g~~~v~~~~~~----------~ 371 (394)
T PRK11921 310 TINRGILSSTAAILEEIKGL----GFKNKKAAAFGSYGWSGES----VKIITERLKKAGFEIVNDGIRE----------L 371 (394)
T ss_pred CcCccccHHHHHHHHHhhcc----CcCCCEEEEEecCCCccHH----HHHHHHHHHHCCCEEccCcEEE----------E
Confidence 99999888999999998643 6899999999999996443 4557788999999999776542 2
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
..|+++++++|+++|++|++.+
T Consensus 372 ---------------~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 372 ---------------WNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred ---------------eCCCHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999998653
No 12
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.91 E-value=1.9e-24 Score=159.70 Aligned_cols=138 Identities=29% Similarity=0.383 Sum_probs=108.7
Q ss_pred eEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhc---CCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKM---GAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+||++|++ |||+++++.+++.+++. |++++++++.+. +.+++.++ .|...++... ..+++.+||+|||+|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~-g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~-~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEA-GAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQE-LYDKLKEADGIIFAS 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHT-TEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHH-HHHHHHHSSEEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHc-CCEEEEEecccc-chhhcccccccccCCcHHHHH-HHhceecCCeEEEee
Confidence 9999999974 99999999999999984 999999999997 33344322 2222222222 368999999999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
|+|++++|++||+|+||+.. +....++||++++++++++..++.. ....+...+..+|+.+++..+
T Consensus 79 P~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~~~-~~~~l~~~~~~~~~~~~~~~~ 144 (152)
T PF03358_consen 79 PVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGGLR-ALEQLRQILDYLGMIVVPSGV 144 (152)
T ss_dssp EEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTTHH-HHHHHHHHHHHTTBEEECCSE
T ss_pred cEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHHHH-HHHHHHHHHHHCCCEEcCCcE
Confidence 99999999999999999963 2345899999999988877555544 467788888889999998743
No 13
>PRK07308 flavodoxin; Validated
Probab=99.91 E-value=4e-23 Score=151.72 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=115.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|+.|+|+|++|||+++|+.|++.+++ .|+++++.++.+.+ ..++.++|.|||++|+|
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~~--------------------~~~l~~~d~vi~g~~t~ 59 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRE-LGHDVDVDECTTVD--------------------ASDFEDADIAIVATYTY 59 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHh-CCCceEEEecccCC--------------------HhHhccCCEEEEEeCcc
Confidence 3499999999999999999999999987 48889988887642 34688999999999999
Q ss_pred C-CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 82 F-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 82 ~-~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
. +.+|..++.|++.+.. ..++||++++|++++..++..-.....+.+.|...|+.++..++. ++
T Consensus 60 g~G~~p~~~~~fl~~l~~----~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~----------~~- 124 (146)
T PRK07308 60 GDGELPDEIVDFYEDLAD----LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVK----------VD- 124 (146)
T ss_pred CCCCCCHHHHHHHHHHhc----CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEE----------Ee-
Confidence 6 8899999999999864 268899999999965432222223556677888899998776543 22
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
..|+++++++++++|++|++.
T Consensus 125 --------------~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 125 --------------LAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred --------------CCCCHHHHHHHHHHHHHHHhh
Confidence 569999999999999999753
No 14
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.91 E-value=2.7e-23 Score=178.74 Aligned_cols=146 Identities=24% Similarity=0.363 Sum_probs=121.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
++||+|+|+|++|||++||+.|++++++. .|++++++++.+.++..+. .++.+||+||||||+
T Consensus 251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~----------------~~~~~ad~vilGspT 314 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEIL----------------TNVFRSKGVLVGSST 314 (479)
T ss_pred cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHH----------------hHHhhCCEEEEECCc
Confidence 36899999999999999999999999863 3678999999876654432 356789999999999
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|++++.++++.|++.+... .++||++++|+|+||.+++ ...+.+.|...|+.++. ++. ++
T Consensus 315 ~~~~~~p~~~~fl~~l~~~----~l~gK~~~vFGSygw~g~a----~~~~~~~l~~~g~~~~~-~l~----------~~- 374 (479)
T PRK05452 315 MNNVMMPKIAGLLEEITGL----RFRNKRASAFGSHGWSGGA----VDRLSTRLQDAGFEMSL-SLK----------AK- 374 (479)
T ss_pred cCCcchHHHHHHHHHhhcc----CcCCCEEEEEECCCcCcHH----HHHHHHHHHHCCCEEec-cEE----------EE-
Confidence 9999999999999998643 6899999999999996543 45577888899999974 332 22
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 197 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 197 (203)
..|++++++++++||++|++.++
T Consensus 375 --------------~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 375 --------------WRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred --------------ecCCHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999997665
No 15
>PRK09267 flavodoxin FldA; Validated
Probab=99.90 E-value=5.3e-22 Score=149.23 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=116.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| ||+|+|+|.+|||+++|+.|++.++. .+++++++.+.. ..++.++|.||||+|+
T Consensus 1 mm-ki~IiY~S~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~~--------------------~~~l~~~d~vi~g~pt 56 (169)
T PRK09267 1 MA-KIGIFFGSDTGNTEDIAKMIQKKLGK---DVADVVDIAKAS--------------------KEDFEAYDLLILGIPT 56 (169)
T ss_pred CC-eEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEhhhCC--------------------HhhHhhCCEEEEEecC
Confidence 65 99999999999999999999999964 267888876532 3478899999999999
Q ss_pred CC-CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCC--chhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccc
Q 028847 81 RF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEK 157 (203)
Q Consensus 81 y~-~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|+ +.+|+.++.|++.+.. ..++||++++|+++++.+.. ....+..+.+.|.+.|+++++.....|+.......
T Consensus 57 ~~~G~~~~~~~~fl~~~~~----~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~ 132 (169)
T PRK09267 57 WGYGELQCDWDDFLPELEE----IDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKA 132 (169)
T ss_pred cCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccce
Confidence 95 8889999999998742 26889999999987654222 12335667788888999999985444443322222
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 158 VKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
++++..+|.. . +.+..++..+ ++.++++++|...
T Consensus 133 ~~~~~~~g~~-~--d~~~~~~~td-~~i~~w~~~i~~~ 166 (169)
T PRK09267 133 VDDGKFVGLA-L--DEDNQSELTD-ERIEAWVKQIKPE 166 (169)
T ss_pred eeCCEEEEEE-e--cCCCchhhhH-HHHHHHHHHHHHH
Confidence 3444444432 1 3333344444 8888888887653
No 16
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.90 E-value=1e-22 Score=155.56 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=124.5
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
||++|++|+ .++|.++++.+++.+.+. |++++++|+.+.++.+|..++.. .++. ....+++.+||+|||+||+|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~-g~ev~~idL~~l~~~~~~~~~~~--~~~~-~~~~~~i~~AD~iIi~tP~Y 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGL-GVEVYHWNLQNFAPEDLLYARFD--SPAL-KTFTEQLAQADGLIVATPVY 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhC-CCEEEEEEccCCChHHHHhccCC--CHHH-HHHHHHHHHCCEEEEECCcc
Confidence 899999998 488999999999999874 89999999998877665543211 1111 11368999999999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHH-HHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~-~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|+++|+.||+|||++.. ..++||++++++++|.. ++... + ..+...|...|+.+++.+........
T Consensus 78 ~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~~-~~~~~-~~~~lr~~l~~l~a~~~~~~~~~~~~~~------- 144 (191)
T PRK10569 78 KASFSGALKTLLDLLPE----RALEHKVVLPLATGGSV-AHMLA-VDYALKPVLSALKAQEILHGVFADDSQV------- 144 (191)
T ss_pred CCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCCc-hhHHH-HHHHHHHHHHHcCCeecCceEEEechhh-------
Confidence 99999999999999852 46899999999998654 33332 3 34556777889988776643211000
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
. .+ +..+..+++..++.+.++++++..+..
T Consensus 145 ----~--~~--d~~~~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 145 ----I--DY--HHQPQFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred ----h--cc--ccccccCHHHHHHHHHHHHHHHHHHcc
Confidence 0 01 112345888999999999999876654
No 17
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.88 E-value=6.7e-22 Score=149.34 Aligned_cols=169 Identities=20% Similarity=0.146 Sum_probs=116.7
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC-CCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP-KSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||++|.||+ .|+|.++++.+.+.+.+..|++++++|+.+.++ ++..+.+.. .++......+++.+||+|||+||+
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~ 78 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAP--SLGGALWRSQLPPDAERILQAIESADLLVVGSPV 78 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcCh--hhccccccCCCCHHHHHHHHHHHHCCEEEEECCc
Confidence 799999997 589999999999987632488999999987543 222221111 011111246889999999999999
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
||+++|++||+|||++.. ..+.||++++++++|+..++. .....+...+...|+.+++..+...
T Consensus 79 Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~----------- 142 (174)
T TIGR03566 79 YRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERHAL-MVEHQLRPLFGFFQALTLPTGVYAS----------- 142 (174)
T ss_pred CcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccchH-HHHHHHHHHHHHhCcccccceEEEE-----------
Confidence 999999999999999852 368999999998887644432 2123355566677877765432210
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 197 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 197 (203)
.. .+ .+| ...+++..++++++++.+++.+.
T Consensus 143 ~~-----~~-~~g-~l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 143 DA-----DF-ADY-RLASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred hh-----hh-ccc-cccCHHHHHHHHHHHHHHHHHhc
Confidence 00 01 112 23577788999999999887764
No 18
>PRK00170 azoreductase; Reviewed
Probab=99.87 E-value=1.1e-21 Score=151.31 Aligned_cols=142 Identities=20% Similarity=0.166 Sum_probs=99.0
Q ss_pred CCceEEEEEecC--c-chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhhhc--CC--CCCCCCC----------C
Q 028847 1 MATKVYIVYYSM--Y-GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKM--GA--GPKSDVP----------T 62 (203)
Q Consensus 1 mm~kilIiy~S~--~-G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~~~--~~--~~~~~~~----------~ 62 (203)
|| ||++|++|+ . |+|.++++.+.+++++. +|.+|+++|+.+..++ ++.+. .+ .+....+ .
T Consensus 1 Mm-kil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 78 (201)
T PRK00170 1 MS-KVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIP-VLDGEVVGALGKSAETLTPRQQEAVALSD 78 (201)
T ss_pred CC-eEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCC-CCCHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 64 999999997 4 89999999999999873 3789999999987652 22211 11 1110000 1
Q ss_pred CChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCCCCCc--hhHHHHHH
Q 028847 63 ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAI 131 (203)
Q Consensus 63 ~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~ 131 (203)
...+++.+||+|||+||+||+++|+.||+||||+.... ..+.++||++.+++|+|+..... ......+.
T Consensus 79 ~l~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~ 158 (201)
T PRK00170 79 ELLEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLK 158 (201)
T ss_pred HHHHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHH
Confidence 12578999999999999999999999999999985321 11358999999999987643221 22233444
Q ss_pred HHHHHcCcEEecC
Q 028847 132 TQLVHHGMIFVPI 144 (203)
Q Consensus 132 ~~l~~~g~~~v~~ 144 (203)
..+...|+..++.
T Consensus 159 ~~~~~~G~~~~~~ 171 (201)
T PRK00170 159 TFLGFIGITDVEF 171 (201)
T ss_pred HHHHhcCCCceEE
Confidence 5555667766543
No 19
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.86 E-value=6.3e-21 Score=143.59 Aligned_cols=167 Identities=19% Similarity=0.125 Sum_probs=114.2
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
||++|++|+ .|+|.++++.+.+.+.+ .|.+++++++.+.+..+|..+.. ..++. ....+++.+||+|||+||+|
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~~~~~~~~~--~~~~~-~~l~~~i~~AD~iI~~sP~Y 76 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQE-QGVEVDHLSVRDLPAEDLLFARF--DSPAI-KAATAQVAQADGVVVATPVY 76 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHH-CCCeEEEEEecCCChHHhhhcCC--CCHHH-HHHHHHHHHCCEEEEECCcc
Confidence 699999997 58999999999999987 38899999998876654443211 11111 11368899999999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHH-HHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~-~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|+++|+.||+|||++.. ..++||++++++++|.. ++... + ..+...|...|+.++...+..+.. .
T Consensus 77 ~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~~-~~~~~-~~~~l~~~l~~l~~~~~~~~v~~~~~-------~- 142 (171)
T TIGR03567 77 KASYSGVLKALLDLLPQ----RALRGKVVLPIATGGSI-AHLLA-IDYALKPVLSALGARHILPGVFALDS-------Q- 142 (171)
T ss_pred cCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCch-hHHHH-HHHHHHHHHHHcCCccccceEEEEhh-------H-
Confidence 99999999999999852 36899999988887653 23222 3 235567777888654433221100 0
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
. .+...|....+++..++++.++++++.
T Consensus 143 ---~---~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 143 ---I---ERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred ---h---ccccCCccccCHHHHHHHHHHHHHHHh
Confidence 0 011112111467778888888887753
No 20
>PRK12359 flavodoxin FldB; Provisional
Probab=99.86 E-value=7.6e-20 Score=136.94 Aligned_cols=162 Identities=20% Similarity=0.212 Sum_probs=116.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-C
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-F 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
|++|+|+|.+|||+.+|+.|++.+.. ..++++++.+.. .+++.+||.||||+|+| .
T Consensus 2 ki~I~Y~S~TGNTe~vAe~I~~~lg~---~~v~v~~i~~~~--------------------~~~l~~yD~iIlG~pTw~~ 58 (172)
T PRK12359 2 KIGLFYGSSTCYTEMAAEKIRDIIGE---ELVDLHNLKDDP--------------------PKLMEQYDVLILGIPTWDF 58 (172)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHhCC---CeEEEEEcccCC--------------------hhHHccCCEEEEEecccCC
Confidence 89999999999999999999999843 257888887642 35788999999999999 6
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCc--hhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc-
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK- 159 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~- 159 (203)
+.+|..+..|++.+.. ..|+||++++|+++++.+.+. ..++..+.+.|...|.++++...+.|+++....-++
T Consensus 59 Gel~~d~~~~~~~l~~----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~ 134 (172)
T PRK12359 59 GEIQEDWEAVWDQLDD----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTA 134 (172)
T ss_pred CcCcHHHHHHHHHHhh----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEc
Confidence 7789999999988753 368999999999988643322 233556778888899999998777776654332222
Q ss_pred CCC-CCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 160 GGS-PYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 160 ~~~-~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
.+. +.|- +. |. .+.++..-+++..+.++|....
T Consensus 135 ~~~~f~gl-~l--D~-~nq~~~t~~ri~~W~~~~~~~~ 168 (172)
T PRK12359 135 DGQLFVGL-AL--DE-VNQYDLSDERIQQWCEQILLEM 168 (172)
T ss_pred CCCEEEEE-EE--cC-CCchhhhHHHHHHHHHHHHHHH
Confidence 111 2211 11 11 2333445678888888876543
No 21
>PRK01355 azoreductase; Reviewed
Probab=99.86 E-value=1.3e-20 Score=145.13 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=99.9
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhhhcC---CCCCCCCCCCChhhhhccCe
Q 028847 2 ATKVYIVYYSMY----GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKMG---AGPKSDVPTITPNELAEADG 73 (203)
Q Consensus 2 m~kilIiy~S~~----G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aD~ 73 (203)
|+||++|++|+. |+|.++++.+.+++++. .+.+++++|+.+.++++|...+. +...++......+++.+||+
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 359999999984 78999999999999873 35799999999876643322111 11111111124689999999
Q ss_pred EEEecccCCCCcHHHHHHHHHHhccc-----c---c----ccCCCCCeEEEEEccCCCCCCc--hhHHHHHHHHHHHcCc
Q 028847 74 ILLGFPTRFGMMAAQFKAFLDATGGL-----W---R----SQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGM 139 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk~fld~~~~~-----~---~----~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~~~l~~~g~ 139 (203)
|||+||+||+++|++||+||||+... + . .+.+.||++.+++|+|+..+.. ......+...+...|+
T Consensus 81 iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G~ 160 (199)
T PRK01355 81 VVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLGA 160 (199)
T ss_pred EEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcCC
Confidence 99999999999999999999998532 1 0 1357899999999998643211 2223445556666677
Q ss_pred EEec
Q 028847 140 IFVP 143 (203)
Q Consensus 140 ~~v~ 143 (203)
..+.
T Consensus 161 ~~~~ 164 (199)
T PRK01355 161 KVVD 164 (199)
T ss_pred Ccee
Confidence 6654
No 22
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.85 E-value=3.1e-20 Score=152.86 Aligned_cols=141 Identities=30% Similarity=0.420 Sum_probs=122.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.|+|.|++|||+.||++|++++.+ .|++|+++++...+++++. .++.+|++|++|+|+++.
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~-~gv~v~~~~~~~~~~~eI~----------------~~i~~a~~~vvGsPT~~~ 310 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMK-EGVDVEVINLEDADPSEIV----------------EEILDAKGLVVGSPTING 310 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhh-cCCceEEEEcccCCHHHHH----------------HHHhhcceEEEecCcccC
Confidence 69999999999999999999999999 5999999999987766653 589999999999999999
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSP 163 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (203)
++++++..++-.+... ..++|.+++|+++||.+++. ..+.+.|...|+.+...++. ++
T Consensus 311 ~~~p~i~~~l~~v~~~----~~~~k~~~vfgS~GW~g~av----~~i~~~l~~~g~~~~~~~i~----------vk---- 368 (388)
T COG0426 311 GAHPPIQTALGYVLAL----APKNKLAGVFGSYGWSGEAV----DLIEEKLKDLGFEFGFDGIE----------VK---- 368 (388)
T ss_pred CCCchHHHHHHHHHhc----cCcCceEEEEeccCCCCcch----HHHHHHHHhcCcEEeccceE----------EE----
Confidence 9999999999988643 67899999999999977654 34668889889988765543 33
Q ss_pred CccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 164 YGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 164 ~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
..|+++++++|+++|+.|++
T Consensus 369 -----------~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 369 -----------FRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred -----------ecCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999863
No 23
>PRK13556 azoreductase; Provisional
Probab=99.83 E-value=9.3e-20 Score=141.38 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=99.5
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhh-----hcCCCCCC-----------CC
Q 028847 2 ATKVYIVYYSMY----GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLG-----KMGAGPKS-----------DV 60 (203)
Q Consensus 2 m~kilIiy~S~~----G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~-----~~~~~~~~-----------~~ 60 (203)
|+|||+|.+|+. ++|.++++.+.+.+++. +|.+|+++||.+..++. +. .+...... +.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPY-VGVDMINGTFKAGKGFELTEEEAKAVAV 79 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC-CCHHHHHhhccccccccCCHHHHHHHHH
Confidence 359999999974 78999999999999864 37899999999765532 22 11111110 00
Q ss_pred CCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc-----c----ccCCCCCeEEEEEccCCCCC-----CchhH
Q 028847 61 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----R----SQQLAGKPAGIFYSTGSQGG-----GQETT 126 (203)
Q Consensus 61 ~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~-----~----~~~l~gK~~~~~~t~g~~~~-----~~~~~ 126 (203)
.....+++.+||.|||++|+||+++|+.||+|||++.... . .+.+.+|++.+++++|+... +....
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 0113578999999999999999999999999999997531 1 13589999999999876441 11122
Q ss_pred HHHHHHHHHHcCcEEecC
Q 028847 127 PLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 127 ~~~~~~~l~~~g~~~v~~ 144 (203)
...+...|...|+..++.
T Consensus 160 ~~~l~~il~~~G~~~~~~ 177 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET 177 (208)
T ss_pred HHHHHHHHHhcCCCceeE
Confidence 334555666677766553
No 24
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.83 E-value=2.6e-19 Score=138.60 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=123.3
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCC--ChhhhhccCeEEEec
Q 028847 3 TKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI--TPNELAEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~aD~iiigs 78 (203)
+||++|.||. .+++..+++++++.+.+. |++++++|+.+.+..+.. .+..|.. ..+.+.+||+|||+|
T Consensus 27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~~-g~~v~~idl~~lPl~~~d-------~~~~p~v~~l~~~v~~ADgvii~T 98 (219)
T TIGR02690 27 PRILLLYGSLRERSYSRLLAEEAARLLGCE-GRETRIFDPPGLPLPDAA-------HADHPKVRELRQLSEWSEGQVWCS 98 (219)
T ss_pred CEEEEEECCCCCcchHHHHHHHHHHHHhhc-CCEEEEeCcccCCCCCcC-------cccCHHHHHHHHHHHhCCEEEEeC
Confidence 4999999996 467999999999999874 899999999875432110 0111211 357889999999999
Q ss_pred ccCCCCcHHHHHHHHHHhccccc-ccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccc
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEK 157 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|+||+++|+.|||+||++.+.+. ...+.||++++++++++.+ +. .+...+...|...++.+++..+..+....
T Consensus 99 PEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~-g~-ra~~~LR~vl~~l~a~v~p~~v~i~~a~~---- 172 (219)
T TIGR02690 99 PERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ-SF-NAVNILRRLGRWMRMPTIPNQSSVAKAFD---- 172 (219)
T ss_pred CccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh-HH-HHHHHHHHHHHHCCCccccchhhhhhhHh----
Confidence 99999999999999999986432 1358999999988775533 33 33667778888899999887544321100
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 158 VKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
.+..+| ...+++..+...++.+++...+...
T Consensus 173 ----------~fd~~G-~l~d~~~~~~l~~~l~~~~~~~~~~ 203 (219)
T TIGR02690 173 ----------EFDEAG-RMKPSDYYDRVVDVMEELTKFTLLT 203 (219)
T ss_pred ----------hcCcCC-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 111122 2456777888888888888777653
No 25
>PRK09739 hypothetical protein; Provisional
Probab=99.83 E-value=6.9e-20 Score=141.21 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=90.1
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcC--CCCC--CCCC---CCChhhhhccC
Q 028847 2 ATKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMG--AGPK--SDVP---TITPNELAEAD 72 (203)
Q Consensus 2 m~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~--~~~~--~~~~---~~~~~~l~~aD 72 (203)
||||++|++|+ .|+|.++++.+.+.+++. |.+++++|+.+.++++++.+.. +... ...+ ....+++.+||
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~-g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD 81 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQER-GHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHD 81 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCC
Confidence 45999999998 478999999999999984 8899999999877666654321 1111 0111 12368899999
Q ss_pred eEEEecccCCCCcHHHHHHHHHHhcccc---c-ccCCCCCeEEEEEccCCCC
Q 028847 73 GILLGFPTRFGMMAAQFKAFLDATGGLW---R-SQQLAGKPAGIFYSTGSQG 120 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~lk~fld~~~~~~---~-~~~l~gK~~~~~~t~g~~~ 120 (203)
.|||++|+||+++|+.||+|||++.... . ...+.+|+++++.|+|+..
T Consensus 82 ~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 82 ALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred EEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 9999999999999999999999985321 1 2357899999988877643
No 26
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.83 E-value=8.6e-19 Score=131.48 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=110.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-C
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-F 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
||+|+|+|.+|||+++|+.|++.+.+ .+++++++.+.. ..++.++|.||||+|+| +
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~~--------------------~~~l~~~d~ii~gspty~~ 57 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE---DDVDVFNIAKAS--------------------KEDLNAYDKLILGTPTWGV 57 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEcccCC--------------------HhHHhhCCEEEEEecCCCC
Confidence 68999999999999999999999964 357888887632 34788999999999999 6
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCC--chhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+.+|..++.|++.+.. ..++||++++|++++..+.+ ...++..+.+.|...|+++++...+.|+....+-.+..
T Consensus 58 g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~ 133 (167)
T TIGR01752 58 GELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRD 133 (167)
T ss_pred CcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeC
Confidence 7789899999998753 26889999999988653211 12335667788888999999987666654432222211
Q ss_pred CCCCccceecCCCCCCCCHHH--HHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELE--LAQAFHQGKYFA 193 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~--~~~~~~~g~~l~ 193 (203)
+. .+.|-...+|++++ .+++.++.+.|.
T Consensus 134 ~~-----~f~gl~~~~~~~~~~~~~r~~~w~~~~~ 163 (167)
T TIGR01752 134 GD-----KFVGLALDEDNQPDLTEERIEKWVEQIK 163 (167)
T ss_pred CC-----EEEEEEecCCCchhhhHHHHHHHHHHHH
Confidence 10 11111113454444 466667766655
No 27
>PRK09271 flavodoxin; Provisional
Probab=99.82 E-value=6.2e-19 Score=131.33 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=101.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|++|+|+|.+|||+++|+.|++.+++ .|+++++.++....+.+ ...++.++|.||||||+|++
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~----------------~~~~~~~~d~vilgt~T~~~ 64 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEE-AGHEVDWVETDVQTLAE----------------YPLDPEDYDLYLLGTWTDNA 64 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHh-CCCeeEEEecccccccc----------------cccCcccCCEEEEECcccCC
Confidence 89999999999999999999999988 48899888876543221 12367789999999999965
Q ss_pred C-cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCc--hhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 84 M-MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 84 ~-~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+ +|..++.|++.+.. ...++|++++|++++...++. ..+...+...|... ...+. ++
T Consensus 65 G~~p~~~~~f~~~l~~----~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~----------~~- 124 (160)
T PRK09271 65 GRTPPEMKRFIAELAE----TIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLK----------IE- 124 (160)
T ss_pred CcCCHHHHHHHHHHHH----HhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCcee----------ee-
Confidence 5 57789999999852 134789999999985333221 12234444555321 11111 11
Q ss_pred CCCCccceecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSE-LELAQAFHQGKYFAGIT 196 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~-~~~~~~~~~g~~l~~~~ 196 (203)
..|.+ .|++++++++++++..+
T Consensus 125 --------------~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 125 --------------QMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred --------------cCCccchhHHHHHHHHHHHHHHh
Confidence 45665 47899999999999776
No 28
>PRK06934 flavodoxin; Provisional
Probab=99.80 E-value=3.3e-19 Score=137.83 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=81.1
Q ss_pred ceEEEEEecCc------------------------chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCC-CC
Q 028847 3 TKVYIVYYSMY------------------------GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAG-PK 57 (203)
Q Consensus 3 ~kilIiy~S~~------------------------G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~ 57 (203)
.||||+|+|.. |||+++|+.|++.+.. .-.+++..+.+..+.+++....... ..
T Consensus 36 ~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~ga-Dl~eI~~~~~Y~~~yd~~~~~a~~E~~~ 114 (221)
T PRK06934 36 RRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGG-DLFRIETVKPYPRQHDPLLKYAEQEVKE 114 (221)
T ss_pred CceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCC-CEEEEEEccccCCCCchhhhHHHHhhhc
Confidence 48999999976 8999999999999854 1224444444433333333321111 12
Q ss_pred CCCCCC--ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCC
Q 028847 58 SDVPTI--TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG 122 (203)
Q Consensus 58 ~~~~~~--~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~ 122 (203)
+..|.. ..+++.+||.|+||+|+||+.+|++++.||++. ++.||++++|+|+|+.+.+
T Consensus 115 ~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg~g 174 (221)
T PRK06934 115 GGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSRFS 174 (221)
T ss_pred CCCHHHHHHHHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCCCcc
Confidence 223332 257899999999999999999999999999998 6899999999999765433
No 29
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.80 E-value=3.1e-19 Score=132.05 Aligned_cols=106 Identities=27% Similarity=0.450 Sum_probs=65.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhh------c-CCC-CCCCCCCC--ChhhhhccCe
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGK------M-GAG-PKSDVPTI--TPNELAEADG 73 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~------~-~~~-~~~~~~~~--~~~~l~~aD~ 73 (203)
|+||||+|.+|||+++|+.|++.+ |+++.-+......+...+.. . .+. .....|++ ...++.+||.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~----gadi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKT----GADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCC----T-EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHH----CCCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 799999999999999999999987 33433332222222200110 0 000 11223433 2458999999
Q ss_pred EEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC
Q 028847 74 ILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 120 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
|+||+|+||+++|+++++||++. +++||+++.|+|+|+.+
T Consensus 77 I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~ 116 (156)
T PF12682_consen 77 IFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSG 116 (156)
T ss_dssp EEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS--
T ss_pred EEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCC
Confidence 99999999999999999999987 68999999999998754
No 30
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.80 E-value=2e-18 Score=125.93 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=79.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEE-EEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAK-LWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR- 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y- 81 (203)
|++|||+|.+|||+++|+.|++.++. .|++++ ++++.+... ...++.++|.||||||+|
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~~~------------------~~~~~~~~d~iilgs~t~~ 62 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTLAD------------------APLDPENYDLVFLGTWTWE 62 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhh-CCeeEEeccccccccc------------------CcCChhhCCEEEEEcCeeC
Confidence 89999999999999999999999987 487776 444443100 123577899999999998
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCc--hhHHHHHHHHHH
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLV 135 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~~~l~ 135 (203)
++.+|..++.|++.+. .++|++++|++++...++. ..+...+.+.|.
T Consensus 63 ~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 63 RGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred CCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 6678889999999983 4799999999996543321 133555555653
No 31
>PRK13555 azoreductase; Provisional
Probab=99.78 E-value=5.5e-18 Score=131.00 Aligned_cols=139 Identities=15% Similarity=0.037 Sum_probs=95.9
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHh----hhcCCCC--CCCC-------C--
Q 028847 2 ATKVYIVYYSMY----GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVL----GKMGAGP--KSDV-------P-- 61 (203)
Q Consensus 2 m~kilIiy~S~~----G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~----~~~~~~~--~~~~-------~-- 61 (203)
|+|+|+|++|+. +.|.++++.+.+.+++. ++.+|+.+||.+.+++.+- ...+... .+.. +
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 359999999964 67999999999999875 3479999999987654221 1111110 0000 1
Q ss_pred CCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCCCCCc-----hhHH
Q 028847 62 TITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ-----ETTP 127 (203)
Q Consensus 62 ~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~~-----~~~~ 127 (203)
....+++.+||.|||++|.||+++|+.||+|||++.... ..+.++||++.+++++|+...+. ....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~ 160 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAV 160 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHH
Confidence 113678999999999999999999999999999986431 12468999999999987644331 1112
Q ss_pred HHHHHHHHHcCcE
Q 028847 128 LTAITQLVHHGMI 140 (203)
Q Consensus 128 ~~~~~~l~~~g~~ 140 (203)
..+...|...|+.
T Consensus 161 ~yl~~il~~~Gi~ 173 (208)
T PRK13555 161 NYVTTVLGFWGIT 173 (208)
T ss_pred HHHHHHHHhcCCC
Confidence 3444455555554
No 32
>PRK07116 flavodoxin; Provisional
Probab=99.78 E-value=1.6e-18 Score=129.11 Aligned_cols=109 Identities=25% Similarity=0.394 Sum_probs=73.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchh---H----hhhcCCCCCCCCCCC--ChhhhhccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSED---V----LGKMGAGPKSDVPTI--TPNELAEAD 72 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~---~----~~~~~~~~~~~~~~~--~~~~l~~aD 72 (203)
|||++|||+|.+|||+++|+.|++.+.. .. +++.....+.... . ............|.. ...++.++|
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~-d~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D 78 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGA-DL--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYD 78 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcC-Ce--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCC
Confidence 3599999999999999999999999954 12 2333222211000 0 000000000011110 134788999
Q ss_pred eEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC
Q 028847 73 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 120 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
.||||+|+|++++|+.++.|++++ .+.||++++|+|+|+.+
T Consensus 79 ~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~ 119 (160)
T PRK07116 79 VIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSG 119 (160)
T ss_pred EEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCC
Confidence 999999999999999999999986 57899999999987654
No 33
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.76 E-value=2e-17 Score=127.48 Aligned_cols=140 Identities=21% Similarity=0.192 Sum_probs=95.5
Q ss_pred ceEEEEEecCc---chHHHHHHHHHHHhhccCC-ceEEEEEcCCCCchhHhhh--cC---CCCC-C-CCCCCCh-hhhhc
Q 028847 3 TKVYIVYYSMY---GHVEKLAEEIQKGAASVEG-VEAKLWQVPETLSEDVLGK--MG---AGPK-S-DVPTITP-NELAE 70 (203)
Q Consensus 3 ~kilIiy~S~~---G~T~~la~~i~~~l~~~~g-~~v~~~~l~~~~~~~~~~~--~~---~~~~-~-~~~~~~~-~~l~~ 70 (203)
||||||++|+. ++|.++++.+.+.+++. + .+++++||... +.+.+.. .. ..++ . ....... +++.+
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~-~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 78 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEA-GPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLW 78 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHH-TTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHc-CCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 39999999985 46999999999999985 7 79999999986 3222211 00 0000 0 0000123 78999
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhccc---c--------cccCCCCCeEEEEEccCCCCC----------CchhHHHH
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATGGL---W--------RSQQLAGKPAGIFYSTGSQGG----------GQETTPLT 129 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~~~---~--------~~~~l~gK~~~~~~t~g~~~~----------~~~~~~~~ 129 (203)
||.|||++|+||+++|+.||.|||++... + ..+.|+||++.+++|+|+... ..+..+..
T Consensus 79 AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 79 ADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred cCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 99999999999999999999999998321 1 135789999999999987621 11232334
Q ss_pred HHHHHHHcCcEEecC
Q 028847 130 AITQLVHHGMIFVPI 144 (203)
Q Consensus 130 ~~~~l~~~g~~~v~~ 144 (203)
+...+...|+..+..
T Consensus 159 ~~~~~~~~G~~~~~~ 173 (199)
T PF02525_consen 159 LRGILKFCGIKDVES 173 (199)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHhCCCceeeE
Confidence 555667789988864
No 34
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.75 E-value=3.7e-17 Score=119.83 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=97.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|+|+|.+|||+.+|+.|++.+.+ .|.++++++..+ .+++.++|.+||++|+|
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~----------------------~~~l~~~~~li~~~sT~ 57 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEE-AGFSTETLHGPL----------------------LDDLSASGLWLIVTSTH 57 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHH-cCCceEEeccCC----------------------HHHhccCCeEEEEECCC
Confidence 4799999999999999999999999987 488888876532 34688899999999999
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
.|.+|...+.|++.+... ...++|+++++|+.+++.+.........+.+.|...|+..+...
T Consensus 58 G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 120 (146)
T PRK09004 58 GAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGET 120 (146)
T ss_pred CCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeecc
Confidence 899999999999988531 23689999999999988653323345667788888999988654
No 35
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.75 E-value=9.1e-17 Score=118.58 Aligned_cols=148 Identities=24% Similarity=0.192 Sum_probs=106.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|+|+|.+|||+.+|+.|++.+.+. +.++.+...... ....+..+|.+++++|+|
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~-~~~~~~~~~~~~--------------------~~~~~~~~d~~~~g~~t~ 59 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD-GFEVDIDIRPGI--------------------KDDLLESYDELLLGTPTW 59 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC-CceEEEeecCCc--------------------chhhhccCCEEEEEeCCC
Confidence 35999999999999999999999999984 777744333321 112346899999999999
Q ss_pred C-CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCC-chhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 82 F-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 82 ~-~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~-~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
. +..|..+..|++.+.. ..+++|++++|+++.+.+.+ .......+...+...|....+..-..+.
T Consensus 60 ~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~--------- 126 (151)
T COG0716 60 GAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGY--------- 126 (151)
T ss_pred CCCcCCccHHHHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccce---------
Confidence 5 6667799999999863 37999999999996665444 2233556667777777544433222110
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
.....|++++.+++++|++++...
T Consensus 127 ------------~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 127 ------------IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ------------eccCCCCCccHHHHHHHHHHHHhh
Confidence 001458899999999999998753
No 36
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.74 E-value=1.4e-17 Score=125.98 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=77.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|++|+|+|.+|||+++|+.|++.++. |++++++++.+.. ..++.+||.||||+|+|++
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~~--------------------~~~l~~yD~vIlGspi~~G 59 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE--GIQCDVVNLHRIE--------------------EPDLSDYDRVVIGASIRYG 59 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC--CCeEEEEEhhhcC--------------------ccCHHHCCEEEEECccccC
Confidence 89999999999999999999999975 7789999887632 2368899999999999999
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.+++.++.|+++.. ..+++|++++|+++..
T Consensus 60 ~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l~ 89 (177)
T PRK11104 60 HFHSALYKFVKKHA-----TQLNQMPSAFFSVNLT 89 (177)
T ss_pred CcCHHHHHHHHHHH-----HHhCCCeEEEEEechh
Confidence 99999999998863 3689999999998853
No 37
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.70 E-value=4.6e-16 Score=117.64 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=85.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|||+|||++|+.......-+.+.+.+.+ ..+|+++|+....++.-. +. ....+.+.+||.|||.+|+|
T Consensus 5 ~~kiLiI~aHP~~~~S~~n~~l~~~~~~--~~~v~~~DL~~~~p~~~~---------d~-~~eq~~l~~aD~iV~~fPl~ 72 (184)
T PRK04930 5 PPKVLLLYAHPESQDSVANRVLLKPAQQ--LEHVTVHDLYAHYPDFFI---------DI-PHEQALLREHDVIVFQHPLY 72 (184)
T ss_pred CCEEEEEECCCCcccCHHHHHHHHHHHc--CCceEEEECcccCCCCCC---------CH-HHHHHHHHhCCEEEEEcCcc
Confidence 4699999999864322222233333433 347999999886442100 00 01356899999999999999
Q ss_pred CCCcHHHHHHHHHHhccc-c--c--ccCCCCCeEEEEEccCCCCC-----Cch-hHHHHHHH----HHHHcCcEEecCC
Q 028847 82 FGMMAAQFKAFLDATGGL-W--R--SQQLAGKPAGIFYSTGSQGG-----GQE-TTPLTAIT----QLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~-~--~--~~~l~gK~~~~~~t~g~~~~-----~~~-~~~~~~~~----~l~~~g~~~v~~~ 145 (203)
|+++|+.||.|+|++... | . ...++||++.+++|.|++.. +.. .++.++.. .+...||.+++..
T Consensus 73 w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~ 151 (184)
T PRK04930 73 TYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPI 151 (184)
T ss_pred ccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcE
Confidence 999999999999998532 1 1 13589999999988776421 111 12333333 3445688887654
No 38
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.69 E-value=3.9e-16 Score=118.76 Aligned_cols=130 Identities=23% Similarity=0.307 Sum_probs=95.4
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCC---CChhhhhccCeEEEe
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPT---ITPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~l~~aD~iiig 77 (203)
||++|+||. .+.|+.+++.+++.+.....+++..+++ +.+. +.... .+..|. ...+++.++|++||+
T Consensus 2 kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~-~lP~~~~d~~------~~~~p~~v~~~~~~i~~aD~li~~ 74 (184)
T COG0431 2 KILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDL-DLPLYNEDLE------ADGLPPAVQALREAIAAADGLIIA 74 (184)
T ss_pred eEEEEeccCcccchHHHHHHHHHHhhcccCceEEEeccc-ccCCCCcchh------hccCCHHHHHHHHHHHhCCEEEEE
Confidence 899999997 4679999999999998842233444343 2211 10000 012222 136789999999999
Q ss_pred cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 78 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 78 sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
||+|++++|+.+||.||++.+ ..+.+|++++++++++..++.. ....+...+...++.+++.+
T Consensus 75 tPeYn~s~pg~lKnaiD~l~~----~~~~~Kpv~~~~~s~g~~~~~~-a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 75 TPEYNGSYPGALKNAIDWLSR----EALGGKPVLLLGTSGGGAGGLR-AQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred CCccCCCCCHHHHHHHHhCCH----hHhCCCcEEEEecCCCchhHHH-HHHHHHHHHHhcCceecccc
Confidence 999999999999999999974 2689999999999988655543 34566777788899998875
No 39
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.69 E-value=1.2e-15 Score=113.13 Aligned_cols=148 Identities=26% Similarity=0.317 Sum_probs=95.8
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCc
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMM 85 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~ 85 (203)
+|+|.|.+|||+++|++|++.+.. .+++++.+.. +.+.+||.|++|+++|.|++
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~-----~~~~~~~~~~---------------------~~~~~yD~i~lG~w~d~G~~ 54 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA-----KDIVSVEEPP---------------------EDLEDYDLIFLGFWIDKGTP 54 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----ceeEeccccc---------------------cCCCCCCEEEEEcCccCCCC
Confidence 589999999999999999999942 4566666521 12889999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHH---HHHHcCcEEecCCCCCCCCCCc-cccccC-
Q 028847 86 AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAIT---QLVHHGMIFVPIGYTFGAGMSE-MEKVKG- 160 (203)
Q Consensus 86 ~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~---~l~~~g~~~v~~~~~~~~~~~~-~~~~~~- 160 (203)
+..++.||.++ +||++++|+|+|....... ...+.+ .+...+..+++...+.|.-... ....+.
T Consensus 55 d~~~~~fl~~l---------~~KkV~lF~T~G~~~~s~~--~~~~~~~~~~~~~~~~~~lg~f~CqGk~~~~~~e~~~~~ 123 (160)
T PF12641_consen 55 DKDMKEFLKKL---------KGKKVALFGTAGAGPDSEY--AKKILKNVEALLPKGNEILGTFMCQGKMDPKVIEKYKKM 123 (160)
T ss_pred CHHHHHHHHHc---------cCCeEEEEEecCCCCchHH--HHHHHHHHHHhhccCCeecceEEeCCcCCHHHHHHHHhc
Confidence 99999999975 6899999999987433221 222222 3333456777655444421100 000000
Q ss_pred ---CCCCccce--ecC--CCCCCCCHHHHHHHHHHHH
Q 028847 161 ---GSPYGAGT--FAG--DGSRQPSELELAQAFHQGK 190 (203)
Q Consensus 161 ---~~~~g~~~--~~~--~~~~~p~~~~~~~~~~~g~ 190 (203)
........ .+. .+..+||++|++.|+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~a~~HPde~Dl~~a~~~~k 160 (160)
T PF12641_consen 124 LPKNPPHAMTPERLARFDEAASHPDEEDLQNAKAFFK 160 (160)
T ss_pred cCCCCCCcccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 00000000 000 2446899999999988763
No 40
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.67 E-value=1.9e-15 Score=113.82 Aligned_cols=140 Identities=19% Similarity=0.083 Sum_probs=100.7
Q ss_pred CceEEEEEecCc---chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhh----hcCCCCCCC-CC---------CC
Q 028847 2 ATKVYIVYYSMY---GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLG----KMGAGPKSD-VP---------TI 63 (203)
Q Consensus 2 m~kilIiy~S~~---G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~----~~~~~~~~~-~~---------~~ 63 (203)
|+|||+|-.|+. +.|.++++.+.+.+++. ++.++..+||...+++.+-. ..+...... .+ ..
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 479999999985 56999999999999875 67789999998876554322 111111110 11 11
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCCCCCc----hhHHHHH
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ----ETTPLTA 130 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~~----~~~~~~~ 130 (203)
..+++..||.+||++|.||+++|++||+|||++.+.. ..+.+.||++.++.+.|+.++.. .....++
T Consensus 81 l~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YL 160 (202)
T COG1182 81 LLEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYL 160 (202)
T ss_pred HHHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHH
Confidence 3678999999999999999999999999999995421 24578999999999988865443 2234455
Q ss_pred HHHHHHcCcEE
Q 028847 131 ITQLVHHGMIF 141 (203)
Q Consensus 131 ~~~l~~~g~~~ 141 (203)
...|...|+.-
T Consensus 161 r~ilgF~Gitd 171 (202)
T COG1182 161 RTILGFLGITD 171 (202)
T ss_pred HHHhhhcCCCc
Confidence 55666666643
No 41
>PRK08105 flavodoxin; Provisional
Probab=99.66 E-value=2.9e-15 Score=110.18 Aligned_cols=121 Identities=18% Similarity=0.102 Sum_probs=96.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|+|+|.+|||+.+|+.|++.+.+ .|+++++.++.+.. .....++|.|||++|+|
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~~--------------------~~~~~~~~~vi~~~sT~ 59 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTA-QGHEVTLFEDPELS--------------------DWQPYQDELVLVVTSTT 59 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCceEEechhhCC--------------------chhcccCCeEEEEECCC
Confidence 5799999999999999999999999988 48899888875421 11234579999999999
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
.|.+|..++.|++.+... ...++|+++++|+.++..+.........+.+.|...|++.+...
T Consensus 60 G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 122 (149)
T PRK08105 60 GQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGER 122 (149)
T ss_pred CCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeecc
Confidence 789999999999998632 13689999999999987542223345667788888999988653
No 42
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.65 E-value=1.7e-15 Score=110.78 Aligned_cols=89 Identities=24% Similarity=0.423 Sum_probs=72.9
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCc
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMM 85 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~ 85 (203)
||||.|.+|||+++|+.|++.+.+. ++.+++.+... ...++.++|.||||+|+|.+.+
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~----~~~v~~~~~~~------------------~~~~~~~yD~vi~gspiy~g~~ 58 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEE----GELVDLEKVEE------------------DEPDLSDYDAVIFGSPIYAGRI 58 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhh----ccEEEHHhhhh------------------cccccccCCEEEEEEEEECCcC
Confidence 6899999999999999999999762 44455544210 1347899999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCC
Q 028847 86 AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 121 (203)
Q Consensus 86 ~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~ 121 (203)
++.++.|++++. ..+.+|++++|+++++...
T Consensus 59 ~~~~~~fi~~~~-----~~l~~k~v~~f~~~~~~~~ 89 (143)
T PF12724_consen 59 PGEMREFIKKNK-----DNLKNKKVALFSVGGSSPE 89 (143)
T ss_pred CHHHHHHHHHHH-----HHHcCCcEEEEEEeCCCCc
Confidence 999999999874 3689999999999988543
No 43
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.63 E-value=4.6e-15 Score=108.33 Aligned_cols=121 Identities=29% Similarity=0.325 Sum_probs=91.2
Q ss_pred EEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC-CCc
Q 028847 7 IVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GMM 85 (203)
Q Consensus 7 Iiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~-~~~ 85 (203)
|+|+|.+|||+++|+.|++++++ .|++++++++.+.+.. ..++.+++.+||++|+|+ +.+
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~sT~~~g~~ 61 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDDS------------------PSDLSEYDLLIFGVSTYGEGEP 61 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCHH------------------HHHHCTTSEEEEEEEEETTTEE
T ss_pred CEEECCchhHHHHHHHHHHHHHH-cCCceeeechhhhhhh------------------hhhhhhhceeeEeecccCCCcc
Confidence 79999999999999999999998 4999999999885421 237889999999999997 446
Q ss_pred HHHHH----HHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 86 AAQFK----AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 86 ~~~lk----~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
|...+ .++...........++++++++|+.+++.+++-......+.+.|...|+.++....
T Consensus 62 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~ 126 (143)
T PF00258_consen 62 PDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLL 126 (143)
T ss_dssp SGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSE
T ss_pred hhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcE
Confidence 64444 33333210001246899999999998776555223467788999999999987643
No 44
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.63 E-value=2.2e-15 Score=114.44 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=86.5
Q ss_pred eEEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCC---CChhhhhccCeEEEecc
Q 028847 4 KVYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT---ITPNELAEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~aD~iiigsP 79 (203)
||||||+++. +.|..+++.+.+.+.+. |.++...|+.....++...... ...+. ...+++.+||.||+..|
T Consensus 2 kiLii~aHP~~sf~~~~~~~~~~~~n~~-~~~v~~~dl~~~~fd~~~~~~d----~~~~~Dv~~E~e~l~~AD~ivlqfP 76 (189)
T COG2249 2 KILIIYAHPNESFTHALSDAALERLNEA-GHEVALKDLYALGFDPYLTYPD----GEFPIDVKAEQEKLLWADVIVLQFP 76 (189)
T ss_pred cEEEEEeCchhhhhHHHHHHHHHHHHHc-chHHHhhhhhhhcCCceeecCc----cCCCCCHHHHHHHHHhcceEEEEcC
Confidence 8999999997 78999999999999984 8888888887765443332111 11211 13789999999999999
Q ss_pred cCCCCcHHHHHHHHHHhcccc----cc-----cCCCCCeEEEEEccCCC
Q 028847 80 TRFGMMAAQFKAFLDATGGLW----RS-----QQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~----~~-----~~l~gK~~~~~~t~g~~ 119 (203)
+||+++|+.||.|||++.... .. +.+.||++.+++|.|++
T Consensus 77 lwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 77 LWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred chhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 999999999999999985331 11 46999999999998864
No 45
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.59 E-value=3.4e-15 Score=107.60 Aligned_cols=88 Identities=22% Similarity=0.406 Sum_probs=79.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|+||+|+|++|+|+++|+.|+..|++. |.+|++.|+.... ..++.++|.||||+|+|.+
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~-g~qvdi~dl~~~~--------------------~~~l~~ydavVIgAsI~~~ 60 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRES-GIQVDIQDLHAVE--------------------EPALEDYDAVVIGASIRYG 60 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhc-CCeeeeeehhhhh--------------------ccChhhCceEEEecchhhh
Confidence 899999999999999999999999984 9999999998631 2378999999999999999
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.....+++|+.+.. ..|..||.++|++.-
T Consensus 61 h~~~~~~~Fv~k~~-----e~L~~kP~A~f~vnl 89 (175)
T COG4635 61 HFHEAVQSFVKKHA-----EALSTKPSAFFSVNL 89 (175)
T ss_pred hhHHHHHHHHHHHH-----HHHhcCCceEEEeeh
Confidence 99999999999874 468999999999863
No 46
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.56 E-value=6.2e-14 Score=105.39 Aligned_cols=125 Identities=17% Similarity=0.274 Sum_probs=80.5
Q ss_pred EEEEEecCcch----HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 5 VYIVYYSMYGH----VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 5 ilIiy~S~~G~----T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||||+++++.. ++.+++.+. +. .+|+++|+.+..+..-.+ .....+.+.+||.|||.+|+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~----~~--~~v~v~dL~~~~p~~~~d----------v~~eq~~l~~aD~iV~~fP~ 65 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQAR----TL--EGVEIRSLYQLYPDFNID----------IAAEQEALSRADLIVWQHPM 65 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHH----hc--CCeEEEEChhhcCCcchh----------HHHHHHHHHhCCEEEEEcCh
Confidence 99999998643 444444444 21 268899988764421110 00136789999999999999
Q ss_pred CCCCcHHHHHHHHHHhccc-c--c--ccCCCCCeEEEEEccCCCC-----CCc---hhHHHHHHHHHHHcCcEEecCC
Q 028847 81 RFGMMAAQFKAFLDATGGL-W--R--SQQLAGKPAGIFYSTGSQG-----GGQ---ETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~-~--~--~~~l~gK~~~~~~t~g~~~-----~~~---~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
||+++|+.||.|+|++... + . ...++||++.+++|.|+.. ++. +.-+..+...+...|+..++..
T Consensus 66 ~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~ 143 (176)
T PRK00871 66 QWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPF 143 (176)
T ss_pred hhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceE
Confidence 9999999999999998532 1 1 2358999998888877641 121 1112222334455688876543
No 47
>PRK05723 flavodoxin; Provisional
Probab=99.54 E-value=3.4e-13 Score=99.24 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=90.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhcc--CeEEEecccC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEA--DGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--D~iiigsP~y 81 (203)
||.|+|+|.+|||+.+|+.+++.+.+ .|+++.++...+ ..++.++ |.|||++|||
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~-~g~~~~~~~~~~----------------------~~~~~~~~~~~li~~~sT~ 58 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKA-AGFEAWHNPRAS----------------------LQDLQAFAPEALLAVTSTT 58 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHH-CCCceeecCcCC----------------------HhHHHhCCCCeEEEEECCC
Confidence 89999999999999999999999987 477776533211 2234444 9999999999
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCC-CchhHHHHHHHHHHHcCcEEecCC
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG-GQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~-~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
.|.+|.....|.+.+... ....|+|+++++|+.+...++ ..-.....+.+.|.+.|.+.+...
T Consensus 59 G~Ge~Pd~~~~f~~~L~~~-~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~ 123 (151)
T PRK05723 59 GMGELPDNLMPLYSAIRDQ-LPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPM 123 (151)
T ss_pred CCCCCchhHHHHHHHHHhc-CccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeecc
Confidence 688999999999988531 012689999999999987653 223446677888888898887543
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.46 E-value=1.9e-12 Score=114.39 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=99.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|++++|+|+|.+||++.+|+.+++.+.+ .|.++++.++.+.. ..++.+++.+||++++|
T Consensus 61 ~~~v~IlygSqTGnae~lA~~la~~l~~-~g~~~~v~~~~d~~--------------------~~~L~~~~~vl~v~ST~ 119 (600)
T PRK10953 61 MPGITLISASQTGNARRVAEQLRDDLLA-AKLNVNLVNAGDYK--------------------FKQIAQEKLLIVVTSTQ 119 (600)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCCcEEechHhCC--------------------HhHhccCCeEEEEECCC
Confidence 4789999999999999999999999988 48999998887643 34788899999999999
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
.|.+|...+.|.+.+... ....|.|+++++|+.+++.+.........+.+.|...|+..+..
T Consensus 120 G~Ge~Pdna~~F~~~L~~~-~~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~ 182 (600)
T PRK10953 120 GEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLD 182 (600)
T ss_pred CCCCCChhHHHHHHHHhhC-cCcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 899999999999988432 12368999999999998875433344566778889999988743
No 49
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=94.25 Aligned_cols=132 Identities=22% Similarity=0.153 Sum_probs=87.0
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHhhc-cCCceEEEEEcCCCCchh-HhhhcCCCCCCC-CCC---CChhhhhccCeE
Q 028847 3 TKVYIVYYSMY--GHVEKLAEEIQKGAAS-VEGVEAKLWQVPETLSED-VLGKMGAGPKSD-VPT---ITPNELAEADGI 74 (203)
Q Consensus 3 ~kilIiy~S~~--G~T~~la~~i~~~l~~-~~g~~v~~~~l~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~l~~aD~i 74 (203)
+||++|.||-. ..+-.+|.++.+.-++ ..|.+++.+|+.+.+... ..+...-..-|. .+. +...++..+|.|
T Consensus 11 ~kv~~imGSvR~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~i 90 (199)
T KOG4530|consen 11 IKVAAIMGSVRKKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEADSI 90 (199)
T ss_pred HHHHHHhhhhhhcccCHHHHHHHHHhhhccCCCCceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhcceE
Confidence 38899999963 3455677777665554 268899999998854210 000000000011 111 135689999999
Q ss_pred EEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 75 LLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 75 iigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
+|+||.||+++|+.|||.||+++. .+.|||+.+++.+| -||+.. ..++........|++.
T Consensus 91 vFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivSyGG-hGGg~c--~~qL~~v~~fLkm~va 150 (199)
T KOG4530|consen 91 VFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVSYGG-HGGGRC--QYQLRQVGVFLKMHVA 150 (199)
T ss_pred EEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEEecC-CCCchH--HHHHHHHHhhheeeee
Confidence 999999999999999999999974 58899999775555 444432 3345555555566643
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.39 E-value=8.6e-12 Score=110.53 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=97.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR- 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y- 81 (203)
++|+|+|+|.+|||+.+|+.+++.+.+ .|.++++.++.+.. ..++.+++.+||++++|
T Consensus 59 ~~i~IlygSqTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~~--------------------~~~l~~~~~li~v~ST~G 117 (597)
T TIGR01931 59 KRVTILYGSQTGNARRLAKRLAEKLEA-AGFSVRLSSADDYK--------------------FKQLKKERLLLLVISTQG 117 (597)
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHh-CCCccEEechHHCC--------------------HhhcccCceEEEEeCCCC
Confidence 589999999999999999999999988 48999998887753 34678899999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
.|.+|...+.|.+.+... ....++|+++++|+.+++.+.........+.+.|...|+..+..
T Consensus 118 eGe~Pdna~~F~~~L~~~-~~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~ 179 (597)
T TIGR01931 118 EGEPPEEAISFHKFLHSK-KAPKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLP 179 (597)
T ss_pred CCcCCHHHHHHHHHHHhC-CCcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 799999999999988532 12368999999999998865433334566778888889988743
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.18 E-value=5.4e-10 Score=80.46 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=78.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC-
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF- 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~- 82 (203)
.+.|+|+|.+|||+++++.+... .+.+++.+. +.+...+-++|++|+|.
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~--------~~~i~i~~~----------------------~~~~~~~~~~lv~PTy~~ 51 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP--------ATRIPINER----------------------ERLEVDEPYILITPTYGG 51 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc--------ceEEecCCC----------------------ccccCCCCEEEEEeccCC
Confidence 48899999999999887766322 234454421 13446789999999997
Q ss_pred ----CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHH-cCcEEecCCCCCCCCCCcccc
Q 028847 83 ----GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH-HGMIFVPIGYTFGAGMSEMEK 157 (203)
Q Consensus 83 ----~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~-~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|.+|..++.||+... -....+++++++....+.. .....+.+.+ .+ ++..+.
T Consensus 52 g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gsGnr~~g~~---f~~a~~~i~~~~~---vp~l~k---------- 108 (134)
T PRK03600 52 GGTAGAVPKQVIRFLNDEH-------NRKLLRGVIASGNRNFGDA---FALAGDVISAKCQ---VPLLYR---------- 108 (134)
T ss_pred CCcCCcccHHHHHHHhccc-------cCCcEEEEEEecCchHHHH---HHHHHHHHHHHhC---CCeEEE----------
Confidence 489999999998753 2345677776665533222 1222334432 23 222211
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028847 158 VKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 193 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 193 (203)
+ +..++++|.+.++++.+++.
T Consensus 109 ~---------------El~gt~~Dv~~~~~~~~~~~ 129 (134)
T PRK03600 109 F---------------ELSGTNEDVENVRKGVEEFW 129 (134)
T ss_pred E---------------ecCCCHHHHHHHHHHHHHHH
Confidence 1 15788899999999998883
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.91 E-value=2.5e-08 Score=70.79 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=54.7
Q ss_pred EEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCc
Q 028847 7 IVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMM 85 (203)
Q Consensus 7 Iiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~ 85 (203)
|+|.|.+|||+++++.+ |+++..+.+...+ ...+ ++|.|+| |++| .|.+
T Consensus 1 IvY~S~TGNte~fv~~l--------g~~~~~i~~~~~d--------------------~~~~-~~~~vli-TyT~G~G~v 50 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKL--------GFQHIRIPVDETD--------------------DIHV-DQEFVLI-TYTGGFGAV 50 (125)
T ss_pred CEEEcccccHHHHHHHc--------CCCcEEeecCCcc--------------------hhhc-CCCEEEE-ecCCCCCcC
Confidence 68999999999994332 4455445444311 1234 8999988 9999 5669
Q ss_pred HHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCC
Q 028847 86 AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 121 (203)
Q Consensus 86 ~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~ 121 (203)
|.++..|++... . +..++++++....+
T Consensus 51 P~~~~~Fle~~~------n---~~~gV~gSGn~n~g 77 (125)
T TIGR00333 51 PKQTISFLNKKH------N---LLRGVAASGNKVWG 77 (125)
T ss_pred CHHHHHHHHhhh------h---cEEEEEEcCCCchH
Confidence 999999999873 2 88898888766543
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.65 E-value=4.8e-07 Score=66.48 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=83.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVE-GVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+++.|+|.|.+|||++.++.+...+.+.. +.++..+++.+..++ ..+.+..-.-.|+.+|+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~-----------------~~~~~~~~~p~vli~pT 63 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHE-----------------TTDFFPETEPFVAFLPT 63 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCc-----------------cccccccCCCEEEEEee
Confidence 478999999999999999999976653311 333444443332100 00123445788999999
Q ss_pred C-CCC----------cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHH-HHcCcEEecCCCCC
Q 028847 81 R-FGM----------MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL-VHHGMIFVPIGYTF 148 (203)
Q Consensus 81 y-~~~----------~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l-~~~g~~~v~~~~~~ 148 (203)
| .++ +|.++..|+..- ..+....++|+++....+..- .. ..+.+ .+.+..++-.
T Consensus 64 Y~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsGNrNfg~~F--~~-aa~~ia~~~~vP~L~~---- 129 (154)
T PRK02551 64 YLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGSGNRNFNNQY--CL-TAKQYAKRFGFPMLAD---- 129 (154)
T ss_pred ecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEeecccHHHHHH--HH-HHHHHHHHcCCCEEEE----
Confidence 9 555 788888888543 225667787877654333221 11 12333 3344444311
Q ss_pred CCCCCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 149 GAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
+ +..-+++|.+..++..++++..
T Consensus 130 -f-----------------------El~GT~~Dv~~v~~~~~~~~~~ 152 (154)
T PRK02551 130 -F-----------------------ELRGTPSDIERIAAIIAELYAA 152 (154)
T ss_pred -e-----------------------eccCCHHHHHHHHHHHHHHHHh
Confidence 1 1356788988888887776643
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.43 E-value=1.7e-06 Score=73.28 Aligned_cols=118 Identities=18% Similarity=0.105 Sum_probs=93.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-C
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-F 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
+|+|+|||.+|+..-+|+.|...+... |..+.+..+.+++ .++|.+.+.|||.+.|- .
T Consensus 2 ~i~ILYGSqTGtA~dvAe~l~Re~~r~-~~~~~V~s~Deyd--------------------~~~ll~~~~vvFVcSTTGq 60 (574)
T KOG1159|consen 2 KILILYGSQTGTAQDVAESLGREAHRR-GLQCLVMSMDEYD--------------------VEKLLDERLVVFVCSTTGQ 60 (574)
T ss_pred ceEEEeecCcccHHHHHHHHHHHHHhc-cCCceEeeccccC--------------------HhHhccCceEEEEEecCCC
Confidence 799999999999999999999999874 7777777776653 45788889999998888 7
Q ss_pred CCcHHHHHHHHHHhcccc-cccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 83 GMMAAQFKAFLDATGGLW-RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
|.+|..||+|-.-+.+.. ....|.+-.+++++-+++++.....+...+..+|...|+.-+
T Consensus 61 Ge~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~ 121 (574)
T KOG1159|consen 61 GEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSV 121 (574)
T ss_pred CCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccc
Confidence 999999998866553211 123478899999999988765544556778889988888765
No 55
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.01 E-value=8.8e-05 Score=52.71 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=76.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM 84 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
++++|.|.+|||++.++.+. +. ..++...+. .+.+.-.+-.|+.+|+|.++
T Consensus 3 ~~v~f~S~SgNt~RFv~kL~--~~---~~~I~~~~~------------------------~~~~~v~epyvlitpTyg~G 53 (141)
T COG1780 3 LLVYFSSLSGNTHRFVEKLG--LP---AVRIPLNRE------------------------EDPIEVDEPYVLITPTYGGG 53 (141)
T ss_pred eEEEEEecCccHHHHHHHhC--CC---ceecccccc------------------------cCCccCCCCeEEEeccccCC
Confidence 67788899999999888774 21 112222111 12344557899999999655
Q ss_pred -----cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHH-HcCcEEecCCCCCCCCCCccccc
Q 028847 85 -----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV-HHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 85 -----~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~-~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+|.++-.||..- .-+.+--++++++....|.... . ..+.+. +.+..++-- |
T Consensus 54 ~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSGN~NfG~~f~--~-Ag~~iS~k~~vPlLy~-----F-------- 110 (141)
T COG1780 54 GTVGAVPKQVIRFLNNE-------HNRALCRGVIASGNRNFGDNFA--L-AGDVISAKCGVPLLYR-----F-------- 110 (141)
T ss_pred CccCccCHHHHHHhccc-------cchhheEEEEecCCccHHHHHH--H-HHHHHHHHhCCCEEEE-----E--------
Confidence 899999999643 1234455666665543333321 1 123333 344444311 1
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
+..-+++|.+..++...++.+...+
T Consensus 111 ---------------EL~GT~~Dv~~v~~~v~~~~~~~~~ 135 (141)
T COG1780 111 ---------------ELLGTAEDVAAVRKGVTEFWKRAPQ 135 (141)
T ss_pred ---------------eccCCHHHHHHHHHHHHHHHHhCCc
Confidence 0356788999988888887766544
No 56
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.78 E-value=7.2e-05 Score=52.83 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=43.2
Q ss_pred EEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC-CC-
Q 028847 7 IVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GM- 84 (203)
Q Consensus 7 Iiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~-~~- 84 (203)
|+|.|.+|||++.++.+...+. ..-+.+... .+.+.-.+-.|+.+|+|. |.
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~------~~~i~~~~~---------------------~~~~~~~ep~vLitpTy~~G~~ 53 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAP------AIRIPIREI---------------------SPDLEVDEPFVLITPTYGFGEN 53 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--S------EEEE-SSCT---------------------TSTS--SS-EEEEEE-BTTTBS
T ss_pred CEEECCCcCHHHHHHHHcccch------hcccccccc---------------------cccccCCCCEEEEecccCCCCC
Confidence 6899999999999988755432 222223221 123445578899999995 44
Q ss_pred ---cHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 85 ---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 85 ---~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
+|.++..||+.-. -+..-.++++++..
T Consensus 54 ~~~vp~~v~~FL~~~~-------N~~~l~GVigSGNr 83 (122)
T PF07972_consen 54 DGGVPKQVIRFLENPD-------NRKLLRGVIGSGNR 83 (122)
T ss_dssp STSS-HHHHHHHHSHH-------HGGGEEEEEEEE-G
T ss_pred CCCCCHHHHHHHHHHH-------HHhhheeEEecCCc
Confidence 8999999999321 12344566666543
No 57
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0036 Score=55.70 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=84.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhc-cCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE-ADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aD~iiigsP~y 81 (203)
.+++|+|+|.+||.+.+|..+++.+... |..+.+.++.+..+. ++.+ =..+++.+...
T Consensus 48 ~~~~il~~sqtG~a~~~A~~~a~~~~~~-g~~~~~~~~~~~~~~--------------------~~~~~~~~~~i~st~g 106 (587)
T COG0369 48 KPITVLYGSQTGNAEGLAEELAKELEAA-GLQVLVASLDDYKPK--------------------DIAEERLLLFVVSTQG 106 (587)
T ss_pred CceEEEEccCCccHHHHHHHHHHHHHhc-CCceeecchhhcChh--------------------hHHhhhceEEEEcccc
Confidence 3689999999999999999999999885 788888888876443 2221 35666667777
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
.|.+|.....|.+.+... ....|.+-..++++.++.+.......-..+...+...|...+
T Consensus 107 eGe~p~na~~f~~~l~~~-~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l 166 (587)
T COG0369 107 EGEPPDNAVAFHEFLKGK-KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRL 166 (587)
T ss_pred CCCCCCchHHHHHHhccc-ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccc
Confidence 999999999999988643 234677888888887776544222223344556666666554
No 58
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=96.86 E-value=0.0068 Score=42.36 Aligned_cols=85 Identities=18% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||||++.|-.+++| +|...++.+.+..++ .|+++.+--=....+. .....+++..+|.||+..
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~-~G~~i~VE~qg~~g~~--------------~~lt~~~i~~Ad~VIia~ 65 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQL-EKWGVKIETQGALGTE--------------NRLTDEDIRRADVVLLIT 65 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcCcC--------------CCCCHHHHHhCCEEEEEe
Confidence 67799999999987 577777788887777 4887764322221111 112357899999999997
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
-.=- -| . ..|.||++.......
T Consensus 66 d~~~----------~~-~------~rF~gk~v~~~s~~~ 87 (114)
T PRK10427 66 DIEL----------AG-A------ERFEHCRYVQCSIYA 87 (114)
T ss_pred cCCC----------Cc-h------hhhCCCeEEEecHHH
Confidence 6521 01 1 257899887665543
No 59
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=96.69 E-value=0.0047 Score=41.64 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=31.9
Q ss_pred Cc-eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 AT-KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~-kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|+ ||+++++|.-|.+..++..+.+.+++ .|+++++...
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~ 39 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQC 39 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 35 79999999988888889999999998 4888877664
No 60
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.064 Score=36.35 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=57.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||++++.+. =+|..|++.+.+.+++. |.++++.-..... ..+.+.++|.+++|
T Consensus 1 Mk~IlLvC~aG-mSTSlLV~Km~~aA~~k-g~~~~I~A~s~~e-------------------~~~~~~~~DvvLlG---- 55 (102)
T COG1440 1 MKKILLVCAAG-MSTSLLVTKMKKAAESK-GKDVTIEAYSETE-------------------LSEYIDNADVVLLG---- 55 (102)
T ss_pred CceEEEEecCC-CcHHHHHHHHHHHHHhC-CCceEEEEechhH-------------------HHHhhhcCCEEEEC----
Confidence 46999988663 35788999999998884 8888877665532 13467799999987
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
|+++-.++.+... ..-+|+|+.++-+
T Consensus 56 -----PQv~y~~~~~~~~---~~~~giPV~vI~~ 81 (102)
T COG1440 56 -----PQVRYMLKQLKEA---AEEKGIPVEVIDM 81 (102)
T ss_pred -----hHHHHHHHHHHHH---hcccCCCeEEeCH
Confidence 5566666555321 1346789999876
No 61
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=95.99 E-value=0.028 Score=37.97 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
++||++++++.-+ |..+++.+.+.+++ .|+++++....
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~-~gi~~~v~a~~ 40 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEE-YGVPVKIAAGS 40 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHH-CCCcEEEEEec
Confidence 4689999998765 44688999999988 48877665543
No 62
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.047 Score=38.18 Aligned_cols=84 Identities=27% Similarity=0.313 Sum_probs=57.7
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
+||+-|-.-++| +|...|+.+.+...+. |+++++--=...... ..++.+++..||+|||++=+
T Consensus 2 ~~IVAVTACPtGIAHTyMAAeaLe~~A~~~-g~~IKVETqGs~G~e--------------N~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 2 KKIVAVTACPTGIAHTYMAAEALEKAAKKL-GVEIKVETQGAVGIE--------------NRLTAEDIAAADVVILAADI 66 (122)
T ss_pred ccEEEEecCCchHHHHHHHHHHHHHHHHHc-CCeEEEEcCCccccc--------------CcCCHHHHHhCCEEEEEecc
Confidence 589999999998 7999999998888874 888876432222111 12357899999999999754
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
- +|.- +.|+||++.=..+...
T Consensus 67 ~-----------i~~~------~ff~gk~vi~~~~~~a 87 (122)
T COG1445 67 E-----------VDLS------RFFAGKPVIEVSTKDA 87 (122)
T ss_pred c-----------ccHh------HhhcCCeEEEecHHHH
Confidence 1 1111 1234999988777654
No 63
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=95.71 E-value=0.023 Score=39.04 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=50.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||++++++.-+.+ .+++.+.+.+++ .|.++++........+ ......++|.|+++
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e-~gi~~~i~a~~~~e~~-----------------~~~~~~~~DvIll~---- 57 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKE-QGKDIEVDAITATEGE-----------------KAIAAAEYDLYLVS---- 57 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHH-CCCceEEEEecHHHHH-----------------HhhccCCCCEEEEC----
Confidence 479999999876444 899999999988 4887776444321100 00012358966654
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
++++..++.+... -.-.|+|+.++-.
T Consensus 58 -----PQi~~~~~~i~~~---~~~~~ipv~~I~~ 83 (104)
T PRK09590 58 -----PQTKMYFKQFEEA---GAKVGKPVVQIPP 83 (104)
T ss_pred -----hHHHHHHHHHHHH---hhhcCCCEEEeCH
Confidence 3455555555311 0235888888754
No 64
>PRK07053 glutamine amidotransferase; Provisional
Probab=95.68 E-value=0.045 Score=43.23 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=37.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE-ecc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFP 79 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii-gsP 79 (203)
||++|+||-.++.-+-..+++.+. + .|.++++++....+. ...++.++|+||| |+|
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L~----~-~g~~~~v~~~~~~~~------------------~~~~~~~~d~lii~Ggp 57 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLG----A-RGYRVRYVDVGVDDL------------------ETLDALEPDLLVVLGGP 57 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHHH----H-CCCeEEEEecCCCcc------------------CCCCccCCCEEEECCCC
Confidence 888999999998765555655554 3 377888887754211 0124567898877 666
Q ss_pred c
Q 028847 80 T 80 (203)
Q Consensus 80 ~ 80 (203)
.
T Consensus 58 ~ 58 (234)
T PRK07053 58 I 58 (234)
T ss_pred C
Confidence 4
No 65
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=95.16 E-value=0.12 Score=33.97 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=41.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+++++|.-|++..+++.+.+.+++. |++++........ ......++|.|+++..+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~-gi~~~~~~~~~~~-------------------~~~~~~~~D~il~~~~i 57 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKEL-GIEVEVSAGSILE-------------------VEEIADDADLILLTPQI 57 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHT-TECEEEEEEETTT-------------------HHHHHTT-SEEEEEESS
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhc-cCceEEEEecccc-------------------cccccCCCcEEEEcCcc
Confidence 799999998888888889999999994 8887776655210 12345569999887765
No 66
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=95.05 E-value=0.51 Score=32.47 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=49.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||++++++.-| |..+++.+.+..++ .|+++++-..+... ..+...++|.|+++
T Consensus 3 ~kkIllvC~~G~s-TSll~~km~~~~~~-~gi~~~V~A~~~~~-------------------~~~~~~~~DviLl~---- 57 (106)
T PRK10499 3 KKHIYLFCSAGMS-TSLLVSKMRAQAEK-YEVPVIIEAFPETL-------------------AGEKGQNADVVLLG---- 57 (106)
T ss_pred CCEEEEECCCCcc-HHHHHHHHHHHHHH-CCCCEEEEEeecch-------------------hhccccCCCEEEEC----
Confidence 4689999877544 56678788777776 47777654432210 11245678977754
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
|+++..++.+.. ...++|+.++-.
T Consensus 58 -----Pqi~~~~~~i~~-----~~~~~pV~~I~~ 81 (106)
T PRK10499 58 -----PQIAYMLPEIQR-----LLPNKPVEVIDS 81 (106)
T ss_pred -----HHHHHHHHHHHh-----hcCCCCEEEECh
Confidence 567777777642 234578887765
No 67
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.85 E-value=0.1 Score=40.14 Aligned_cols=46 Identities=26% Similarity=0.508 Sum_probs=33.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
||+||.+. +||+..+++.+.+ .|+++++++. .+++.++|+|||..+
T Consensus 2 ~~~v~~~~-~~~~~~~~~~l~~-----~G~~~~~~~~------------------------~~~~~~~d~iii~G~ 47 (200)
T PRK13143 2 MIVIIDYG-VGNLRSVSKALER-----AGAEVVITSD------------------------PEEILDADGIVLPGV 47 (200)
T ss_pred eEEEEECC-CccHHHHHHHHHH-----CCCeEEEECC------------------------HHHHccCCEEEECCC
Confidence 79998766 7788777776655 3777777631 135778999999774
No 68
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=94.42 E-value=0.21 Score=42.65 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=64.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
.|-.|+|.|.+|..++.|+.+.+.+... ...+.++++. +.+ .++-+--.++++.|.|.
T Consensus 47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sl-d~~~~llnl~-y~~--------------------~d~pen~~~~lv~~~~~ 104 (601)
T KOG1160|consen 47 IKSKVFYSSLTGTAKKAAKSVHEKLKSL-DELPKLLNLD-YSD--------------------FDVPENALYFLVLPSYD 104 (601)
T ss_pred ccceEEEEeccchHHHHHHHHHHHHHhc-ccchhhcCCC-CCc--------------------cCCCcceEEEEEecccC
Confidence 3557899999999999999999999873 4445666655 211 12334557788888888
Q ss_pred CCcHHHHHHHHHHhccc---c--cccCCCCCeEEEEEccCCCCC
Q 028847 83 GMMAAQFKAFLDATGGL---W--RSQQLAGKPAGIFYSTGSQGG 121 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~---~--~~~~l~gK~~~~~~t~g~~~~ 121 (203)
+..| +.-|+.++..- + ....|+|-++++|+.+.....
T Consensus 105 ~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~ 146 (601)
T KOG1160|consen 105 IDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYW 146 (601)
T ss_pred CCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhh
Confidence 8877 45555555211 1 123578888999998876443
No 69
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.19 Score=33.76 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=28.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCce
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~ 34 (203)
|+|||.++|+.-|.+..+...+.+.+++. |++
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~-gi~ 32 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKEL-GID 32 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHc-CCC
Confidence 35999999999999999999999999984 773
No 70
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=93.89 E-value=0.62 Score=36.12 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=47.9
Q ss_pred eEEEEEecCcc----hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 4 KVYIVYYSMYG----HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~G----~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|||||++...| .-....+.+++.+++..+++|++.+-.+. ...+.|.++|+||+-+-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-------------------~~~~~L~~~Dvvv~~~~ 61 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-------------------LTPENLKGYDVVVFYNT 61 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-------------------TSHHCHCT-SEEEEE-S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-------------------CChhHhcCCCEEEEECC
Confidence 79999988422 22456667777777324777765432211 12457999999999876
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEE
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 114 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~ 114 (203)
.-..--+++.+.|.+.+. .|+.++.+=
T Consensus 62 ~~~~l~~~~~~al~~~v~--------~Ggglv~lH 88 (217)
T PF06283_consen 62 GGDELTDEQRAALRDYVE--------NGGGLVGLH 88 (217)
T ss_dssp SCCGS-HHHHHHHHHHHH--------TT-EEEEEG
T ss_pred CCCcCCHHHHHHHHHHHH--------cCCCEEEEc
Confidence 510124566667777763 576666554
No 71
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=93.45 E-value=0.18 Score=34.28 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=51.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||++++++. -.|..+++.+.+.+++ .|+++++.-..... ..+.+.++|.|+++ |
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~-~gi~~~i~a~~~~e-------------------~~~~~~~~Dvill~-P---- 55 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE-RGVPLEAAAGAYGS-------------------HYDMIPDYDLVILA-P---- 55 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH-CCCcEEEEEeeHHH-------------------HHHhccCCCEEEEc-C----
Confidence 688888554 5688899999999998 48888766554321 13457788966554 3
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
+++..++.+... ..-.|+|+.++-.
T Consensus 56 ----Qv~~~~~~i~~~---~~~~~ipv~~I~~ 80 (99)
T cd05565 56 ----QMASYYDELKKD---TDRLGIKLVTTTG 80 (99)
T ss_pred ----hHHHHHHHHHHH---hhhcCCCEEEeCH
Confidence 345556655321 1235788887753
No 72
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=93.13 E-value=0.2 Score=33.81 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=48.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||++++++.-+.+ .+++.+.+.+++ .|.++++....-.. ..+...++|.| +.+|
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~-~~~~~~v~~~~~~~-------------------~~~~~~~~Dii-l~~P---- 54 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK-RGIDAEIEAVPESE-------------------LEEYIDDADVV-LLGP---- 54 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH-CCCceEEEEecHHH-------------------HHHhcCCCCEE-EECh----
Confidence 6889998876555 689999999998 48776655443211 02245678854 4444
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
+++..++.+... -...++|+.++-.
T Consensus 55 ----qv~~~~~~i~~~---~~~~~~pv~~I~~ 79 (96)
T cd05564 55 ----QVRYMLDEVKKK---AAEYGIPVAVIDM 79 (96)
T ss_pred ----hHHHHHHHHHHH---hccCCCcEEEcCh
Confidence 355555555310 1235788887754
No 73
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=93.03 E-value=0.32 Score=32.00 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=28.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKL 37 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~ 37 (203)
+||++++++..|.+..++..+.+.+.+. ++.+++
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKEN-GIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC-CCceEE
Confidence 4899999999999999999999999763 654444
No 74
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=92.15 E-value=0.81 Score=35.42 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=31.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|| ||.||.+- .||...+++++.+. |.++++.-..+ .+++.++|+|||.-
T Consensus 1 ~~-~~~iid~g-~gn~~s~~~al~~~-----g~~~~v~~~~~----------------------~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MM-TVAIIDYG-SGNLRSAAKALERA-----GAGADVVVTAD----------------------PDAVAAADRVVLPG 49 (209)
T ss_pred CC-eEEEEECC-CChHHHHHHHHHHc-----CCCccEEEECC----------------------HHHhcCCCEEEECC
Confidence 55 88888755 57888887777652 54332222222 35789999999965
No 75
>PRK06490 glutamine amidotransferase; Provisional
Probab=91.72 E-value=1.1 Score=35.53 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||+||-.+..++...+.+.+.+ .|.++++++..
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~-----~g~~~~v~~~~ 41 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQE-----RGYPLDIRRPR 41 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHH-----CCCceEEEecc
Confidence 359999998888888887777753 36788887654
No 76
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=90.91 E-value=1.4 Score=34.22 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| ||.||.+. .||-..+++++.. .|+++.+++.. +++.++|.||+.-|-
T Consensus 1 ~~-~v~iid~~-~GN~~sl~~al~~-----~g~~v~vv~~~------------------------~~l~~~d~iIlPG~g 49 (210)
T CHL00188 1 MM-KIGIIDYS-MGNLHSVSRAIQQ-----AGQQPCIINSE------------------------SELAQVHALVLPGVG 49 (210)
T ss_pred Cc-EEEEEEcC-CccHHHHHHHHHH-----cCCcEEEEcCH------------------------HHhhhCCEEEECCCC
Confidence 55 88888755 6788877777764 26677776421 256789999987653
No 77
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=90.67 E-value=0.95 Score=29.73 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
+||+++++|..|.+..++..+.+.+.+. +..+++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~-~~~~~v~ 35 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKA-GLEIPVT 35 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEE
Confidence 4899999999999888899999999873 6554443
No 78
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=89.22 E-value=1.7 Score=32.96 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=52.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh--hccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~iiigs 78 (203)
|.|||+|+.+.. ....=+-...+.++++ |.++++..+......+.....+-.-. +....+++ .++|.|++..
T Consensus 1 ~~~~~~il~~~g--~~~~e~~~p~~~l~~a-g~~v~~~s~~~~~~~~v~ss~G~~v~---~d~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 1 MSASALVCLAPG--SEETEAVTTIDLLVRG-GIKVTTASVASDGNLEITCSRGVKLL---ADAPLVEVADGDFDVIVLPG 74 (196)
T ss_pred CCceEEEEeCCC--cchhhHhHHHHHHHHC-CCeEEEEEccCCCCceEEcCCCCEEe---CCCCHHHCCCCCCCEEEECC
Confidence 667888887543 2222233344566553 77888776643111011110000000 11112233 4789998854
Q ss_pred cc---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 79 PT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 79 P~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.. ....-++.+..||.+.. -+||+++.++++.
T Consensus 75 G~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G~ 109 (196)
T PRK11574 75 GIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICAAP 109 (196)
T ss_pred CCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECHhH
Confidence 21 11122345777777663 3788888877664
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=89.19 E-value=3.2 Score=32.77 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=33.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE-eccc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii-gsP~ 80 (203)
||+||...+.-....+...+. + .|++++++++..-.+ ...++.++|+||| |+|-
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~~----~-~g~~~~~~~~~~g~~------------------~p~~~~~~d~vii~GGp~ 56 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWAE----N-RGYDISYSRVYAGEA------------------LPENADGFDLLIVMGGPQ 56 (235)
T ss_pred eEEEEecCCCCCchHHHHHHH----H-CCCeEEEEEccCCCC------------------CCCCccccCEEEECCCCC
Confidence 899999887544444444442 2 377888877653110 1124678999887 6664
No 80
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=89.06 E-value=1.6 Score=31.59 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=39.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
+||+|+|..-+..-...+..+++.|++..|++|. +|..+... .. .+.+.=....+.++|.|||.++
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~-lD~~~~~~i~~----------~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVI-LDQWELNEIAR----------QGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCcee-ecHHhhccccc----------CCHHHHHHHHHhcCCEEEEEec
Confidence 4899988664444457788888888873388774 45544311 00 0000001456899999888765
No 81
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=88.58 E-value=2.7 Score=28.27 Aligned_cols=60 Identities=28% Similarity=0.278 Sum_probs=37.8
Q ss_pred EEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 6 YIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 6 lIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
++|..+++| +|..+++.+.+.+++ .|+++++.--....+.. ....+++.++|.||+.+-.
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~-~g~~~~ve~~~~~g~~~--------------~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKK-LGWEIKVETQGSLGIEN--------------ELTAEDIAEADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecCcCccC--------------cCCHHHHhhCCEEEEecCC
Confidence 445555555 577777788888888 48887654332211110 1124689999999998765
No 82
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=88.58 E-value=6 Score=29.95 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=33.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEE-Eeccc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGIL-LGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii-igsP~ 80 (203)
||||||-.. ...|..+++.+.+ .|+++++++..+.. .+++.++|+|| .+.|-
T Consensus 2 ~~iliid~~-dsf~~~i~~~l~~-----~g~~~~v~~~~~~~--------------------~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 2 TKLLIINNH-DSFTFNLVDLIRK-----LGVPMQVVNVEDLD--------------------LDEVENFSHILISPGPD 54 (190)
T ss_pred cEEEEEeCC-CchHHHHHHHHHH-----cCCcEEEEECCccC--------------------hhHhccCCEEEECCCCC
Confidence 489998744 3345556666644 27788888765421 23577899998 44664
No 83
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=88.04 E-value=2.1 Score=37.62 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=40.5
Q ss_pred eEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 4 KVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
|++.|-.+++| +|...++.+.+..++ .|+++++.-=...... ...+.+++.++|.||+.
T Consensus 5 kivaVtacp~GiAht~mAaeaL~~aA~~-~G~~i~VEtqg~~g~~--------------~~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 5 RIVAITNCPAGIAHTYMVAEALEQKARS-LGHTIKVETQGSSGVE--------------NRLSSEEIAAADYVILA 65 (482)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCccCC--------------CCCCHHHHHhCCEEEEe
Confidence 89999989887 577777888888877 4887765322221111 11245789999999999
No 84
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=87.89 E-value=1.1 Score=38.08 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=30.2
Q ss_pred CceEEEEEecCc-chHHHHHHHHHHHhhcc-C-CceEEEEEcCCC
Q 028847 2 ATKVYIVYYSMY-GHVEKLAEEIQKGAASV-E-GVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilIiy~S~~-G~T~~la~~i~~~l~~~-~-g~~v~~~~l~~~ 43 (203)
||||||++.|.. |+ .+.|++|++.+++. . +++++++|+-+.
T Consensus 5 ~~~vlil~~~~G~GH-~~aA~al~~~~~~~~~~~~~~~~~D~~~~ 48 (391)
T PRK13608 5 NKKILIITGSFGNGH-MQVTQSIVNQLNDMNLDHLSVIEHDLFME 48 (391)
T ss_pred CceEEEEECCCCchH-HHHHHHHHHHHHhhCCCCceEEEeehHHh
Confidence 469999998864 55 56789999999764 1 357887787654
No 85
>PRK05637 anthranilate synthase component II; Provisional
Probab=87.89 E-value=8.5 Score=29.75 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=24.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||++|. ...|+|..+++.+.+. |++++++...
T Consensus 1 ~~~il~iD-~~dsf~~nl~~~l~~~-----g~~~~v~~~~ 34 (208)
T PRK05637 1 MTHVVLID-NHDSFVYNLVDAFAVA-----GYKCTVFRNT 34 (208)
T ss_pred CCEEEEEE-CCcCHHHHHHHHHHHC-----CCcEEEEeCC
Confidence 46888776 3467889888888652 6678887653
No 86
>PRK09065 glutamine amidotransferase; Provisional
Probab=87.74 E-value=5.6 Score=31.40 Aligned_cols=75 Identities=7% Similarity=0.003 Sum_probs=41.2
Q ss_pred CceEEEEE-ecCcchHH----HHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 2 ATKVYIVY-YSMYGHVE----KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 2 m~kilIiy-~S~~G~T~----~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
|+|++|+- .++....+ ...+.+...+.. .+++++++++....+ ..++.++|+|||
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------~p~~~~~dgvvi 60 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGL-AEQPVVVVRVFAGEP-------------------LPAPDDFAGVII 60 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhcc-CCceEEEEeccCCCC-------------------CCChhhcCEEEE
Confidence 57899885 33322111 134445555555 377888888765211 225677898887
Q ss_pred e-cccCC-CCcH--HHHHHHHHHh
Q 028847 77 G-FPTRF-GMMA--AQFKAFLDAT 96 (203)
Q Consensus 77 g-sP~y~-~~~~--~~lk~fld~~ 96 (203)
. +|... ...| ..++.|+...
T Consensus 61 ~Gg~~~~~d~~~w~~~~~~~i~~~ 84 (237)
T PRK09065 61 TGSWAMVTDRLDWSERTADWLRQA 84 (237)
T ss_pred eCCCcccCCCchhHHHHHHHHHHH
Confidence 6 44321 2233 3356666664
No 87
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=87.62 E-value=2.2 Score=26.89 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=24.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCce
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~ 34 (203)
|+++++++..|.+..++..+.+.+.+. +..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~-~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKEL-GIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHC-CCe
Confidence 578888888889999999999999873 553
No 88
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=87.32 E-value=1.4 Score=28.40 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAAS 29 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~ 29 (203)
.|+++++++..|.+..+++.+.+.+.+
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~ 27 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPE 27 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 379999999999999999999999965
No 89
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=87.13 E-value=3.2 Score=27.31 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=37.0
Q ss_pred EEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 7 IVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 7 Iiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
+|-.++.| +|...++.+.+...+ .|+++.+--=....+. .....+++..+|.||+..-+
T Consensus 2 ~vtacp~G~Aht~lAae~L~~aA~~-~G~~i~VE~qg~~g~~--------------~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 2 AVTACPTGIAHTFMAAEALEKAAKK-RGWEVKVETQGSVGAQ--------------NALTAEDIAAADGVILAADR 62 (85)
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcCcc--------------CCCCHHHHHhCCEEEEeccC
Confidence 34556666 577777788877777 4887764322221111 11235789999999999655
No 90
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=86.99 E-value=2.2 Score=27.68 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=25.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCce
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~ 34 (203)
|+++++++..|.+..+...+.+.+.+. +..
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~-~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKEL-GIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHC-CCc
Confidence 589999999999999999999999763 654
No 91
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=86.83 E-value=2.7 Score=32.06 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=30.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||.+. .||+..+++.+.+ .|+++++++.. +++.++|+|||..|
T Consensus 1 i~i~d~g-~~~~~~~~~~l~~-----~g~~v~v~~~~------------------------~~l~~~d~iiipG~ 45 (198)
T cd01748 1 IAIIDYG-MGNLRSVANALER-----LGAEVIITSDP------------------------EEILSADKLILPGV 45 (198)
T ss_pred CEEEeCC-CChHHHHHHHHHH-----CCCeEEEEcCh------------------------HHhccCCEEEECCC
Confidence 3555433 5788888777764 27788876521 25678999999776
No 92
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=86.74 E-value=11 Score=32.66 Aligned_cols=49 Identities=18% Similarity=0.008 Sum_probs=32.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 120 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
..+.+||.+|.+.--.+....+. +.|+-.+. ..+.|||+.+++.+-++-
T Consensus 113 ~~l~~aDlvI~gGG~lfqD~y~~-~~~~y~l~-----A~l~gkpv~l~gqsiGPf 161 (426)
T PRK10017 113 RLLSGYDAIIQVGGSFFVDLYGV-PQFEHALC-----AFMAKKPLYMIGHSVGPF 161 (426)
T ss_pred HHHHhCCEEEECCCCccccCccc-HHHHHHHH-----HHHcCCCEEEECCcCCCc
Confidence 46899999999988776654442 23321111 146799999888776654
No 93
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=86.65 E-value=9.8 Score=27.36 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=59.3
Q ss_pred CceEEEEEecCcchHHHHHHH-HHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEE-IQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~-i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|++..|+.++..|..+.+... ++..++. .|. +++++...-+ +.+ .+.+.+.+.=+++-.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~--eVi~LG~~vp~e~i----------------~~~a~~~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTE-AGF--EVINLGVMTSQEEF----------------IDAAIETDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHH-CCC--EEEECCCCCCHHHH----------------HHHHHHcCCCEEEEc
Confidence 467777888876655555554 4455555 474 5667765333 332 233444444444444
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEE
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
...++--..++.+++.+.. ..+.+.++. .+|....+... .......+.+.|+..
T Consensus 62 ~~~~~~~~~~~~~~~~L~~----~~~~~~~i~---vGG~~~~~~~~-~~~~~~~l~~~G~~~ 115 (137)
T PRK02261 62 SLYGHGEIDCRGLREKCIE----AGLGDILLY---VGGNLVVGKHD-FEEVEKKFKEMGFDR 115 (137)
T ss_pred CccccCHHHHHHHHHHHHh----cCCCCCeEE---EECCCCCCccC-hHHHHHHHHHcCCCE
Confidence 4455677778999998852 124443322 33322111111 223456777777543
No 94
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=85.67 E-value=2.2 Score=32.66 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=30.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
||+||.+- .||...+++++.+ .|+++++++ + .+++.++|+|||
T Consensus 2 ~i~iid~g-~gn~~s~~~~l~~-----~g~~~~~v~--~----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 2 NVVIIDTG-CANLSSVKFAIER-----LGYEPVVSR--D----------------------PDVILAADKLFL 44 (196)
T ss_pred eEEEEeCC-CchHHHHHHHHHH-----CCCeEEEEC--C----------------------HHHhCCCCEEEE
Confidence 79988755 5788888886654 266777663 1 236778999998
No 95
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=85.28 E-value=1.9 Score=38.61 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=30.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
++||+++++|.-|.+..++..+.+.+++. |+++++.
T Consensus 506 ~mKILvaCGsGiGTStmva~kIkk~Lke~-GI~veV~ 541 (602)
T PRK09548 506 PVRILAVCGQGQGSSMMMKMKIKKYLDKR-GIPIIMD 541 (602)
T ss_pred ccEEEEECCCCchHHHHHHHHHHHHHHHc-CCCeEEE
Confidence 35999999999999999999999999994 8876543
No 96
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=84.73 E-value=4.9 Score=31.35 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=68.3
Q ss_pred CceEEEEEecC---cchHHHHHH--HHHHHhhccCCceEEEEEcCCCCchh-------HhhhcCCC-CCCCC----CCCC
Q 028847 2 ATKVYIVYYSM---YGHVEKLAE--EIQKGAASVEGVEAKLWQVPETLSED-------VLGKMGAG-PKSDV----PTIT 64 (203)
Q Consensus 2 m~kilIiy~S~---~G~T~~la~--~i~~~l~~~~g~~v~~~~l~~~~~~~-------~~~~~~~~-~~~~~----~~~~ 64 (203)
|+||+|+..|. .|. ...+ .....|++ .|++|++.......... ........ ...+. ....
T Consensus 1 ~kkVlills~~~~~dG~--e~~E~~~P~~~L~~-aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
T PRK11780 1 MKKIAVILSGCGVYDGS--EIHEAVLTLLALDR-AGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKD 77 (217)
T ss_pred CCEEEEEEccCCCCCCE--ehhHHHHHHHHHHH-CCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCc
Confidence 46999988653 243 1222 23466666 49999998764421100 00000000 00000 0011
Q ss_pred hh--hhhccCeEEEecc---cCC-CC---------cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC----C-CCch
Q 028847 65 PN--ELAEADGILLGFP---TRF-GM---------MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ----G-GGQE 124 (203)
Q Consensus 65 ~~--~l~~aD~iiigsP---~y~-~~---------~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~----~-~~~~ 124 (203)
.+ ...+||+|||-.- .++ +. ..+.+..++.+.. -.||+++.++.+.+. . .+..
T Consensus 78 l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~-------~~gK~vaAIChgp~iL~~~~~~gr~ 150 (217)
T PRK11780 78 LAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFH-------QAGKPIGFICIAPAMLPKILGAGVK 150 (217)
T ss_pred hhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHH-------HCCCEEEEECHHHHHHHHHhccCcE
Confidence 22 4678999998643 111 11 2455666666653 368999988765321 1 1111
Q ss_pred -hHH--HHHHHHHHHcCcEEecCC
Q 028847 125 -TTP--LTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 125 -~~~--~~~~~~l~~~g~~~v~~~ 145 (203)
+.. ..+...+...|.+++...
T Consensus 151 ~T~~~~~~~~~~~~~aGa~~vd~~ 174 (217)
T PRK11780 151 LTIGNDEDTAAAIEKMGGEHVDCP 174 (217)
T ss_pred EEecCChhhHHHHHHCCCEEEcCC
Confidence 111 345667788899998753
No 97
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=84.70 E-value=8.7 Score=30.90 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=33.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
+||+|+.+..+.+-..+++++. + .|.+++++.+.+.. .....+.++|+|||..-
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~----~-aG~~v~~v~~~~~~------------------~~~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFR----R-LGVEPEYVHINDLA------------------AERKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHH----H-CCCcEEEEeecccc------------------ccccchhhCCEEEECCC
Confidence 4899888665544444444443 3 27788887765421 01235789999998765
No 98
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=84.62 E-value=3.8 Score=36.72 Aligned_cols=63 Identities=27% Similarity=0.223 Sum_probs=43.4
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
+|++.|-.+++| +|...++.+.+..++ .|+++++.-=...... ...+.+++.++|.||+..-+
T Consensus 104 ~kivaVtacptGiAht~mAAeaL~~aA~~-~G~~i~VEtqg~~g~~--------------n~lt~~~i~~Ad~VIia~d~ 168 (563)
T PRK10712 104 KRVVAVTACPTGVAHTFMAAEAIETEAKK-RGWWVKVETRGSVGAG--------------NAITPEEVAAADLVIVAADI 168 (563)
T ss_pred ccEEEEecCCCchhHHHHHHHHHHHHHHH-CCCeEEEEecCCcccC--------------CCCCHHHHHhCCEEEEecCC
Confidence 488889888887 677777888888887 4887765322221111 11246789999999999765
No 99
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=83.63 E-value=8.6 Score=29.36 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=29.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
||.|+.... ....=+..+.+.+++ .|.+++++.+.+ .+++.++|+|||...
T Consensus 2 ~i~vl~~~~--~~~e~~~~~~~~l~~-~g~~~~~~~~~~----------------------~~~l~~~d~iii~GG 52 (200)
T PRK13527 2 KIGVLALQG--DVEEHIDALKRALDE-LGIDGEVVEVRR----------------------PGDLPDCDALIIPGG 52 (200)
T ss_pred EEEEEEECC--ccHHHHHHHHHHHHh-cCCCeEEEEeCC----------------------hHHhccCCEEEECCC
Confidence 665554432 112223344444444 377788877753 235778999998764
No 100
>PRK11538 ribosome-associated protein; Provisional
Probab=82.95 E-value=4.7 Score=27.66 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHH
Q 028847 16 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 16 T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~ 95 (203)
++.+++.+++.+.+..+-++.++|+.+. -.-+|.+||+|-.=.-++.+......+.
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~------------------------~~~~Dy~VIatg~S~rh~~aia~~v~~~ 58 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGK------------------------SSITDCMIICTGTSSRHVMSIADHVVQE 58 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 4677888888887765778999999863 2356999999976555555544444444
Q ss_pred h
Q 028847 96 T 96 (203)
Q Consensus 96 ~ 96 (203)
+
T Consensus 59 ~ 59 (105)
T PRK11538 59 S 59 (105)
T ss_pred H
Confidence 4
No 101
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=82.95 E-value=19 Score=29.12 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCceEEEEEecCcch-HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 1 MATKVYIVYYSMYGH-VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 1 mm~kilIiy~S~~G~-T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
||+||.|| |. |+ ...+|..++ + .|.++..+|........+.. ......+ ...+.+.++|.||+..|
T Consensus 1 ~~~~Igvi-G~--G~mG~~~a~~l~----~-~g~~v~~~d~~~~~~~~~~~-~g~~~~~----~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 1 MTMKVGFI-GL--GIMGKPMSKNLL----K-AGYSLVVYDRNPEAVAEVIA-AGAETAS----TAKAVAEQCDVIITMLP 67 (296)
T ss_pred CCceEEEE-cc--CHHHHHHHHHHH----H-CCCeEEEEcCCHHHHHHHHH-CCCeecC----CHHHHHhcCCEEEEeCC
Confidence 67788776 33 22 234444443 3 37777777654322111111 1110000 01234578999999999
Q ss_pred cCCCCcHHHHHHHHH---HhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 80 TRFGMMAAQFKAFLD---ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 80 ~y~~~~~~~lk~fld---~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
.- ..++..+. .+.. ...+|+.+ +..+... ..+...+.+.+...|..++..++.
T Consensus 68 ~~-----~~~~~v~~~~~~~~~----~~~~g~ii---id~st~~---~~~~~~l~~~~~~~g~~~~d~pv~ 123 (296)
T PRK11559 68 NS-----PHVKEVALGENGIIE----GAKPGTVV---IDMSSIA---PLASREIAAALKAKGIEMLDAPVS 123 (296)
T ss_pred CH-----HHHHHHHcCcchHhh----cCCCCcEE---EECCCCC---HHHHHHHHHHHHHcCCcEEEcCCC
Confidence 73 34555542 2210 11123322 2222211 122445667777778887766543
No 102
>PRK13055 putative lipid kinase; Reviewed
Probab=82.05 E-value=7.2 Score=32.41 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+|+++|+-...| ...+..+.+.+.+++ .|++++++...
T Consensus 1 m~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~ 42 (334)
T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTT 42 (334)
T ss_pred CCceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 67899988866554 456777788888887 47777766554
No 103
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=81.52 E-value=7.3 Score=29.58 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=10.6
Q ss_pred hhhccCeEEEecc
Q 028847 67 ELAEADGILLGFP 79 (203)
Q Consensus 67 ~l~~aD~iiigsP 79 (203)
++.++|+|||...
T Consensus 35 ~l~~~dgiii~GG 47 (189)
T PRK13525 35 DLDEIDGLILPGG 47 (189)
T ss_pred HhccCCEEEECCC
Confidence 5778999999764
No 104
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=81.00 E-value=6.1 Score=30.10 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
+|+-+...||...+.+.+ +. .|+++++++..+ ++.++|+|||+...
T Consensus 2 ~~~~y~~~gN~~~l~~~~----~~-~G~~~~~~~~~~------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 2 AVIRYPDISNFTDLDPLA----RE-PGVDVRYVEVPE------------------------GLGDADLIILPGSK 47 (194)
T ss_pred EeecCCCccCHHHHHHHH----hc-CCceEEEEeCCC------------------------CCCCCCEEEECCCc
Confidence 455555578876554433 33 377888887643 25678999987654
No 105
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=80.92 E-value=9.5 Score=30.92 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=28.7
Q ss_pred CCceEEEEEecCc---chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMY---GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~---G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+++|.|++++.+ ...-.-++.+.+.|++ .|+++.+++..+
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~ 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGE 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCc
Confidence 3458999998764 3333345677777777 499999988664
No 106
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=79.89 E-value=15 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=28.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
||+|+.+-.+-....+++++.+ .|+++.++...+ ..+.++|+|||..-
T Consensus 2 ~v~Vl~~~G~n~~~~~~~al~~-----~G~~~~~i~~~~-----------------------~~l~~~d~lilpGG 49 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDTVYALRL-----LGVDAEIVWYED-----------------------GSLPDYDGVVLPGG 49 (227)
T ss_pred eEEEEeCCCcCcHHHHHHHHHH-----CCCeEEEEecCC-----------------------CCCCCCCEEEECCC
Confidence 8888875422223445555543 277887774332 12567999888764
No 107
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=78.90 E-value=8.9 Score=29.35 Aligned_cols=45 Identities=27% Similarity=0.497 Sum_probs=30.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||-.. .||...+++.+.+ .|++++++.- .+++.++|+|||..|
T Consensus 2 i~~~d~~-~~~~~~i~~~l~~-----~G~~v~~~~~------------------------~~~l~~~d~iiipG~ 46 (205)
T PRK13141 2 IAIIDYG-MGNLRSVEKALER-----LGAEAVITSD------------------------PEEILAADGVILPGV 46 (205)
T ss_pred EEEEEcC-CchHHHHHHHHHH-----CCCeEEEECC------------------------HHHhccCCEEEECCC
Confidence 6666544 6777777776654 2777877531 236788999999664
No 108
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=78.69 E-value=13 Score=30.19 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.1
Q ss_pred eEEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||+++..+.. |..++.+..+++.+.+ .|++|.++.....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeecc
Confidence 8999987764 6777778888888888 4899999887653
No 109
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=78.69 E-value=8 Score=35.22 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=42.2
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
+|++.|-.+++| +|...++.+.+..++ .|+++++---....+. ...+.+++.+||.||+..-.
T Consensus 164 ~~i~avtacp~G~aht~mAae~L~~aA~~-~g~~i~vE~~g~~g~~--------------~~lt~~~i~~Ad~Viia~d~ 228 (631)
T PRK09765 164 PTIVCVTACPAGIAHTYMAAEYLEKAGRK-LGVNVYVEKQGANGIE--------------GRLTADQLNSATACIFAAEV 228 (631)
T ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHHH-CCCeEEEEecCCcCCC--------------CCCCHHHHHhCCEEEEeecC
Confidence 368888888876 577777888888877 4887765322221111 11245789999999998654
No 110
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=78.41 E-value=6.7 Score=30.23 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=46.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|+|.||-+- .||-..+.+++.. -|.++.+.+ ..+++.+||.||+=- -
T Consensus 2 ~~i~IIDyg-~GNL~Sv~~Aler-----~G~~~~vs~------------------------d~~~i~~AD~liLPG---V 48 (204)
T COG0118 2 MMVAIIDYG-SGNLRSVKKALER-----LGAEVVVSR------------------------DPEEILKADKLILPG---V 48 (204)
T ss_pred CEEEEEEcC-cchHHHHHHHHHH-----cCCeeEEec------------------------CHHHHhhCCEEEecC---C
Confidence 478888543 4777766665533 265666532 245899999999843 4
Q ss_pred CCcHHHHHHHHHH--hcccccccCCCCCeEEEEEcc
Q 028847 83 GMMAAQFKAFLDA--TGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 83 ~~~~~~lk~fld~--~~~~~~~~~l~gK~~~~~~t~ 116 (203)
|.++..|+++-.+ +..+ .+....+||+.-++.+
T Consensus 49 Gaf~~am~~L~~~gl~~~i-~~~~~~~kP~LGIClG 83 (204)
T COG0118 49 GAFGAAMANLRERGLIEAI-KEAVESGKPFLGICLG 83 (204)
T ss_pred CCHHHHHHHHHhcchHHHH-HHHHhcCCCEEEEeHh
Confidence 6666666655433 1000 0112356888777764
No 111
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=78.33 E-value=18 Score=28.20 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=28.3
Q ss_pred eEEEEEecCcchHHH-HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVEK-LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~-la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+|+.+-. .|++. +.+++.+. .|+++..+...+ .++.++|+|||..
T Consensus 2 ~v~Vl~~~G-~n~~~d~~~a~~~~----~G~~~~~v~~~~-----------------------~~l~~~D~lvipG 49 (219)
T PRK03619 2 KVAVIVFPG-SNCDRDMARALRDL----LGAEPEYVWHKE-----------------------TDLDGVDAVVLPG 49 (219)
T ss_pred EEEEEecCC-cChHHHHHHHHHhc----CCCeEEEEecCc-----------------------CCCCCCCEEEECC
Confidence 788887654 34433 55555532 266776654322 1466889988875
No 112
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=78.23 E-value=12 Score=26.02 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=52.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh-hccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-AEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~iiigsP~y 81 (203)
++|.||=.|..- .+.+..+.+.+.+ .|.++-.++......... .+ ++ ...++ ..-|.+++.+|
T Consensus 1 ksiAVvGaS~~~--~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~----~~-----y~--sl~e~p~~iDlavv~~~-- 64 (116)
T PF13380_consen 1 KSIAVVGASDNP--GKFGYRVLRNLKA-AGYEVYPVNPKGGEILGI----KC-----YP--SLAEIPEPIDLAVVCVP-- 64 (116)
T ss_dssp -EEEEET--SST--TSHHHHHHHHHHH-TT-EEEEESTTCSEETTE----E------BS--SGGGCSST-SEEEE-S---
T ss_pred CEEEEEcccCCC--CChHHHHHHHHHh-CCCEEEEECCCceEECcE----Ee-----ec--cccCCCCCCCEEEEEcC--
Confidence 467777777531 2233444444444 376666555443221110 00 01 12222 57899999987
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
|..+-.+++.+.. .|-+.++|.++.. -.++.+.+...|+.+++..
T Consensus 65 ----~~~~~~~v~~~~~-------~g~~~v~~~~g~~--------~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 65 ----PDKVPEIVDEAAA-------LGVKAVWLQPGAE--------SEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp ----HHHHHHHHHHHHH-------HT-SEEEE-TTS----------HHHHHHHHHTT-EEEESS
T ss_pred ----HHHHHHHHHHHHH-------cCCCEEEEEcchH--------HHHHHHHHHHcCCEEEeCC
Confidence 4666777777641 2666666655511 2345678888999999764
No 113
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.53 E-value=13 Score=29.60 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=16.4
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
.+.++|.||+++|.+ .++.++..+
T Consensus 59 ~~~~advVil~v~~~------~~~~v~~~l 82 (267)
T PRK11880 59 AAQEADVVVLAVKPQ------VMEEVLSEL 82 (267)
T ss_pred HHhcCCEEEEEcCHH------HHHHHHHHH
Confidence 467899999999854 344444444
No 114
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.45 E-value=16 Score=30.16 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC----C-C------CC-CCCChhhh
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP----K-S------DV-PTITPNEL 68 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~----~-~------~~-~~~~~~~l 68 (203)
|||||.|| |.. .+...++..+.+ .|.+|.+++-... .+. +....... . + .. .....+.+
T Consensus 1 ~~mkI~Ii-G~G-----~mG~~~A~~L~~-~G~~V~~~~r~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (341)
T PRK08229 1 MMARICVL-GAG-----SIGCYLGGRLAA-AGADVTLIGRARI-GDE-LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAAL 71 (341)
T ss_pred CCceEEEE-CCC-----HHHHHHHHHHHh-cCCcEEEEecHHH-HHH-HHhcCceeecCCCcceecccceeEeccChhhc
Confidence 77898876 442 233444444444 3778888875321 111 11111000 0 0 00 00123456
Q ss_pred hccCeEEEecccCC
Q 028847 69 AEADGILLGFPTRF 82 (203)
Q Consensus 69 ~~aD~iiigsP~y~ 82 (203)
..+|.||+++|.+.
T Consensus 72 ~~~D~vil~vk~~~ 85 (341)
T PRK08229 72 ATADLVLVTVKSAA 85 (341)
T ss_pred cCCCEEEEEecCcc
Confidence 78999999999874
No 115
>PRK13054 lipid kinase; Reviewed
Probab=76.67 E-value=15 Score=29.93 Aligned_cols=39 Identities=10% Similarity=-0.065 Sum_probs=23.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+|+++||-...+ ..+....+.+.+.+ .|.+++++...
T Consensus 2 ~~~~~~~i~N~~~~-~~~~~~~~~~~l~~-~g~~~~v~~t~ 40 (300)
T PRK13054 2 TFPKSLLILNGKSA-GNEELREAVGLLRE-EGHTLHVRVTW 40 (300)
T ss_pred CCceEEEEECCCcc-chHHHHHHHHHHHH-cCCEEEEEEec
Confidence 46687777653333 33445556666777 47777764443
No 116
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=76.07 E-value=15 Score=28.85 Aligned_cols=42 Identities=5% Similarity=-0.149 Sum_probs=27.2
Q ss_pred hhhccCeEEEec---ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 67 ELAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 67 ~l~~aD~iiigs---P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
+..+||+|+|-. |.|...-...++.++.... -.||+++.+|.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~-------~~gK~iaAICh 135 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIY-------ANGGVVAAVCH 135 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEECh
Confidence 467999998864 4554555666777777663 24566665554
No 117
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=75.82 E-value=9.7 Score=29.57 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=24.7
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEE
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 114 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~ 114 (203)
..+.++|.|||.||. .++.|++.+...+ ...+.++++++++
T Consensus 48 ~~~~~~d~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 88 (249)
T PRK05928 48 LAALGADWVIFTSKN-------AVEFLLSALKKKK-LKWPKNKKYAAIG 88 (249)
T ss_pred hhCCCCCEEEEECHH-------HHHHHHHHHHhcC-cCCCCCCEEEEEC
Confidence 467889999999975 5666766653110 1134455555543
No 118
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=75.63 E-value=16 Score=29.63 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=29.2
Q ss_pred eEEEEEecCc---chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMY---GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~---G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||.|++|-.+ --+-.-++.+++.|++ .|.++.+++...
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~ 42 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDE 42 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCc
Confidence 8999998753 3466667788888887 488999988754
No 119
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.53 E-value=44 Score=27.46 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=29.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |+++++++++..
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEA-GMASFEHKLPAD 72 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 566676666666777788878888874 999999988754
No 120
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=74.98 E-value=37 Score=26.37 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=43.2
Q ss_pred ceEEEEEecCc--------chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeE
Q 028847 3 TKVYIVYYSMY--------GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGI 74 (203)
Q Consensus 3 ~kilIiy~S~~--------G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 74 (203)
+|++|++.++. |+ -++.+...+.+ .|...+++++.+-. +|. .+++.+||++
T Consensus 5 kr~Alf~at~dsefvk~~yGg---y~nvfvsllg~-ege~wd~frV~~ge---------------fP~--~~Dl~ky~gf 63 (245)
T KOG3179|consen 5 KRIALFLATPDSEFVKKAYGG---YFNVFVSLLGD-EGEQWDLFRVIDGE---------------FPQ--EEDLEKYDGF 63 (245)
T ss_pred eeEEEEecCCchhhhhhhhcC---HHHHHHHHhcc-cCceeEEEEEecCC---------------CCC--hhhhhhhceE
Confidence 57889988752 33 24445566666 47788888887632 222 4688899999
Q ss_pred EEecccC--CCCcHHH
Q 028847 75 LLGFPTR--FGMMAAQ 88 (203)
Q Consensus 75 iigsP~y--~~~~~~~ 88 (203)
||....| +...+..
T Consensus 64 vIsGS~~dAf~d~dWI 79 (245)
T KOG3179|consen 64 VISGSKHDAFSDADWI 79 (245)
T ss_pred EEeCCcccccccchHH
Confidence 9998888 3444443
No 121
>PRK00861 putative lipid kinase; Reviewed
Probab=74.89 E-value=18 Score=29.44 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=25.9
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+|+++|+-...| ...+..+.+...+++ +.+++++....
T Consensus 1 ~~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~--~~~~~~~~t~~ 42 (300)
T PRK00861 1 MTRSACLIFNPVAGQGNPEVDLALIRAILEP--EMDLDIYLTTP 42 (300)
T ss_pred CCceEEEEECCCCCCCchhhhHHHHHHHHHh--cCceEEEEccC
Confidence 77899888865544 455566777777765 35666665544
No 122
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=74.88 E-value=9.2 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=11.6
Q ss_pred hhhhhccCeEEEecc
Q 028847 65 PNELAEADGILLGFP 79 (203)
Q Consensus 65 ~~~l~~aD~iiigsP 79 (203)
.+.+.++|+|+++--
T Consensus 74 ~~~l~~ad~I~v~GG 88 (233)
T PRK05282 74 VAAIENAEAIFVGGG 88 (233)
T ss_pred HHHHhcCCEEEECCc
Confidence 456999999988743
No 123
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=74.40 E-value=9.7 Score=26.28 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=55.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|-+||||+... .+|-.+.+.+++. |+++-.++-+... .......+|.+++--|.
T Consensus 1 ~ikkvLIanrG------eia~r~~ra~r~~-Gi~tv~v~s~~d~-------------------~s~~~~~ad~~~~~~~~ 54 (110)
T PF00289_consen 1 MIKKVLIANRG------EIAVRIIRALREL-GIETVAVNSNPDT-------------------VSTHVDMADEAYFEPPG 54 (110)
T ss_dssp SSSEEEESS-H------HHHHHHHHHHHHT-TSEEEEEEEGGGT-------------------TGHHHHHSSEEEEEESS
T ss_pred CCCEEEEECCC------HHHHHHHHHHHHh-CCcceeccCchhc-------------------ccccccccccceecCcc
Confidence 55788886522 2366666777774 8887777654421 23467788888777643
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
-...---.+...++-.. +.. +....++.+.-.+ -..+.+.+.+.|.+++|..
T Consensus 55 ~~~~~yl~~e~I~~ia~--------~~g---~~~i~pGyg~lse--~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 55 PSPESYLNIEAIIDIAR--------KEG---ADAIHPGYGFLSE--NAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp SGGGTTTSHHHHHHHHH--------HTT---ESEEESTSSTTTT--HHHHHHHHHHTT-EESSS-
T ss_pred hhhhhhccHHHHhhHhh--------hhc---CcccccccchhHH--HHHHHHHHHHCCCEEECcC
Confidence 32111112233333331 012 2233333222222 3457778888999998753
No 124
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=73.21 E-value=11 Score=33.69 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=32.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
++|.||.+. .||...+++.+.+ .|+++.+++- .+++.++|+|||..
T Consensus 7 ~~i~iiDyG-~GN~~sl~~al~~-----~G~~v~~v~~------------------------~~~l~~~D~lIlpG 52 (538)
T PLN02617 7 SEVTLLDYG-AGNVRSVRNAIRH-----LGFTIKDVQT------------------------PEDILNADRLIFPG 52 (538)
T ss_pred CeEEEEECC-CCCHHHHHHHHHH-----CCCeEEEECC------------------------hhhhccCCEEEECC
Confidence 578877655 6888988888875 2667765532 23678999999965
No 125
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=72.73 E-value=34 Score=26.69 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=36.6
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE-ecccCCCCcH-HHHHHHHHHh
Q 028847 19 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPTRFGMMA-AQFKAFLDAT 96 (203)
Q Consensus 19 la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii-gsP~y~~~~~-~~lk~fld~~ 96 (203)
|-..+++.|++ .|.+|++-.+.+... ....+.|.++|+||+ +... ...++ .+.++|.+++
T Consensus 24 ~~~~~~~~L~~-~gf~V~~~~~~d~~~----------------~~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~V 85 (215)
T cd03142 24 MHGTIAAALAE-YGFDVQTATLDEPEH----------------GLTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRRV 85 (215)
T ss_pred HHHHHHHHHHh-cCcEEEEEeccCccc----------------cCCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHHH
Confidence 33445555555 488888554443210 012456999999998 3433 34554 5788888887
Q ss_pred c
Q 028847 97 G 97 (203)
Q Consensus 97 ~ 97 (203)
.
T Consensus 86 ~ 86 (215)
T cd03142 86 L 86 (215)
T ss_pred H
Confidence 4
No 126
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=72.72 E-value=8.7 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 19 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 19 la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
+++.+++.+.+..+.++.++|+... -.-+|.+||+|..=.-++-+......+.+
T Consensus 1 ~~~~i~~~l~~~k~~dI~v~dv~~~------------------------~~~~dy~II~T~~S~rh~~aia~~v~~~~ 54 (100)
T PF02410_consen 1 MLEEIVEALEDKKAEDIVVLDVREK------------------------SSWADYFIIATGRSERHVRAIADEVEKAL 54 (100)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEGCTT------------------------BSS-SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3556666665545668999999862 24579999999865444444444444443
No 127
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=71.92 E-value=22 Score=25.88 Aligned_cols=46 Identities=4% Similarity=-0.061 Sum_probs=31.4
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.....--..++.|+..+.. ...+.|+.++++-
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~piiiv~nK 113 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCGNIPIVLCGNK 113 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEc
Confidence 456789999998887654444456778777742 2237888887774
No 128
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=71.83 E-value=26 Score=26.20 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=37.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+|+-.+.......+.+.+.+... ..+++++++..+... ..++.++|+|||...-...
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~~~~~~-------------------~~~~~~~dgvil~Gg~~~~ 59 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGA--ETIEIDVVDVYAGEL-------------------LPDLDDYDGLVILGGPMSV 59 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCC--CCceEEEEecCCCCC-------------------CCCcccCCEEEECCCCccC
Confidence 5777776653222233333322110 025788877765321 2367899999998654322
Q ss_pred ---CcH--HHHHHHHHHh
Q 028847 84 ---MMA--AQFKAFLDAT 96 (203)
Q Consensus 84 ---~~~--~~lk~fld~~ 96 (203)
..+ ..++.++++.
T Consensus 60 ~~~~~~~~~~~~~~i~~~ 77 (188)
T cd01741 60 DEDDYPWLKKLKELIRQA 77 (188)
T ss_pred CccCChHHHHHHHHHHHH
Confidence 221 3455566554
No 129
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.49 E-value=56 Score=26.91 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=28.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+..++. |++++++.+++.
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 73 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEEA-GIRSLEHRLPAD 73 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 456666555556677777777777774 999999998764
No 130
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=70.87 E-value=24 Score=27.83 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCC--CChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcc
Q 028847 21 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT--ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 98 (203)
Q Consensus 21 ~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~ 98 (203)
..+.+.+.+ .|++|+.+++++..+...- +. .........|.|+|.||. .+++|++.+..
T Consensus 136 ~~l~~~L~~-~G~~v~~~~~Y~~~~~~~~-----------~~~~~~~~~~~~~d~v~ftS~~-------~v~~~~~~~~~ 196 (248)
T COG1587 136 EVLEEKLEE-RGAEVREVEVYRTEPPPLD-----------EATLIELLKLGEVDAVVFTSSS-------AVRALLALAPE 196 (248)
T ss_pred HHHHHHHHh-CCCEEEEEeeeeecCCCcc-----------HHHHHHHHHhCCCCEEEEeCHH-------HHHHHHHHccc
Confidence 556667766 4888888888765332110 00 013467789999999875 68899988753
Q ss_pred cccccCCCCCeEEEE
Q 028847 99 LWRSQQLAGKPAGIF 113 (203)
Q Consensus 99 ~~~~~~l~gK~~~~~ 113 (203)
.... .+..++++.+
T Consensus 197 ~~~~-~~~~~~v~~I 210 (248)
T COG1587 197 SGIE-FLERKRVASI 210 (248)
T ss_pred cchh-HhhCceEEEe
Confidence 2111 2334666655
No 131
>PRK11914 diacylglycerol kinase; Reviewed
Probab=70.68 E-value=17 Score=29.61 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=27.5
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+|+++|+-.. .|...+..+.+.+.+++ .|.+++++...
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~ 48 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGT 48 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 46888888654 45567778888888877 47777765443
No 132
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=70.52 E-value=15 Score=23.15 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=29.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|-+ +++.-.++..+.+.+.+.+.+. |++++++++.+
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~ 38 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIED 38 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTT
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccC
Confidence 7888 6666788888888888888774 78999999843
No 133
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=70.36 E-value=6.7 Score=29.48 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=37.5
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
+-++++|++ +|.|.. |.+++..+-+ .|..|.+++..++ +........+.........+.++|.+||==
T Consensus 48 ~~l~l~G~~G~GKThL-a~ai~~~~~~-~g~~v~f~~~~~L-----~~~l~~~~~~~~~~~~~~~l~~~dlLilDD 116 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHL-AVAIANEAIR-KGYSVLFITASDL-----LDELKQSRSDGSYEELLKRLKRVDLLILDD 116 (178)
T ss_dssp -EEEEEESTTSSHHHH-HHHHHHHHHH-TT--EEEEEHHHH-----HHHHHCCHCCTTHCHHHHHHHTSSCEEEET
T ss_pred eEEEEEhhHhHHHHHH-HHHHHHHhcc-CCcceeEeecCce-----eccccccccccchhhhcCccccccEecccc
Confidence 457788886 788985 5555554444 3888888887653 221111111111111356788999999864
No 134
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.33 E-value=17 Score=29.53 Aligned_cols=62 Identities=11% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCC-ChhhhhccCeEEEecccC
Q 028847 18 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI-TPNELAEADGILLGFPTR 81 (203)
Q Consensus 18 ~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aD~iiigsP~y 81 (203)
.|...++..+++. |..+.++........ +.......-.++.... ....+.++|.||+++|+.
T Consensus 13 liG~s~a~~l~~~-g~~v~i~g~d~~~~~-~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 13 LMGGSLARALKEA-GLVVRIIGRDRSAAT-LKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred hHHHHHHHHHHHc-CCeEEEEeecCcHHH-HHHHhhcCcccccccchhhhhcccCCEEEEeccHH
Confidence 4666777777774 888888877653211 1111000000111011 145677899999999985
No 135
>PRK06444 prephenate dehydrogenase; Provisional
Probab=70.11 E-value=7 Score=30.02 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=18.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAK 36 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~ 36 (203)
|+.||-++. +|.+.++..+++. |.+|.
T Consensus 2 ~~~iiG~~G-----~mG~~~~~~~~~~-g~~v~ 28 (197)
T PRK06444 2 MEIIIGKNG-----RLGRVLCSILDDN-GLGVY 28 (197)
T ss_pred EEEEEecCC-----cHHHHHHHHHHhC-CCEEE
Confidence 788877652 4677777777773 76653
No 136
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.50 E-value=11 Score=30.96 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.0
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|+|+++|+-...+.+..+++.+.+.+++ .|+++.+..
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~ 39 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGP 39 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 5689999887667778889999988877 488877654
No 137
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=68.56 E-value=22 Score=32.46 Aligned_cols=116 Identities=16% Similarity=0.052 Sum_probs=66.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh-hccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-AEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~iiigsP~y 81 (203)
.|++|+|+|.+|..+..|..+.+.+ .. .+.+.+...+++. -.+ ..-+.+++..-+|
T Consensus 47 ~~~~v~~~s~tgtae~~a~~l~~~~-~~--~~~~~~~~~d~~~--------------------~~l~~~~~l~~~~~at~ 103 (645)
T KOG1158|consen 47 VKATVLYGSQTGTAEDFAKRLSEIF-AR--FELKVLKVADYDL--------------------YALEDHEKLLVVVLATY 103 (645)
T ss_pred eeEEEEeccCCCCHHHHHHHHHHHh-hh--ccccceeecchhh--------------------cccccccceeeeeeehh
Confidence 3788999999999999999999888 42 2444444443211 012 3447788888888
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
+|..|..--.|.+.+.... ......+++++|+-+.........-.....+.|...|.+.+
T Consensus 104 g~gd~~dn~~~f~~~l~~~~-~~~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl 164 (645)
T KOG1158|consen 104 GEGDPPDNAEAFYQSLTELK-VLPSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRL 164 (645)
T ss_pred cCCCCCccHHHHHHHHhhcc-CchhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhh
Confidence 6777777777777764210 11233356666665544322211112223344555555443
No 138
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.45 E-value=11 Score=29.34 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=14.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHH
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQ 24 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~ 24 (203)
|| |++|||.-.+| +++.+.++
T Consensus 1 ~m-ki~vlt~g~yG--~R~~~nl~ 21 (224)
T COG1810 1 MM-KILVLTDGEYG--KRAVNNLA 21 (224)
T ss_pred Cc-EEEEEeeccch--HHHHHhHh
Confidence 55 99999987777 55555554
No 139
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=68.35 E-value=43 Score=25.59 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=42.4
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe----c
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG----F 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig----s 78 (203)
++||+|- -..+.|..|++.+.+. |.++.++.=.+.... .-+-.+.|+|||+ +
T Consensus 2 ~~IL~ID-NyDSFtyNLv~yl~~l-----g~~v~V~rnd~~~~~------------------~~~~~~pd~iviSPGPG~ 57 (191)
T COG0512 2 MMILLID-NYDSFTYNLVQYLREL-----GAEVTVVRNDDISLE------------------LIEALKPDAIVISPGPGT 57 (191)
T ss_pred ceEEEEE-CccchHHHHHHHHHHc-----CCceEEEECCccCHH------------------HHhhcCCCEEEEcCCCCC
Confidence 4788875 3466899999988763 445666543321111 1123457999995 6
Q ss_pred ccCCCCcHHHHHHHHH
Q 028847 79 PTRFGMMAAQFKAFLD 94 (203)
Q Consensus 79 P~y~~~~~~~lk~fld 94 (203)
|.=.+.....++.|-.
T Consensus 58 P~d~G~~~~~i~~~~~ 73 (191)
T COG0512 58 PKDAGISLELIRRFAG 73 (191)
T ss_pred hHHcchHHHHHHHhcC
Confidence 7756667777777743
No 140
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=68.17 E-value=22 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=30.0
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCCCch
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPETLSE 46 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~ 46 (203)
+++.||.+|..| +...+++.+.+.++++ |-.+-++-+.+..+.
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~-gkk~y~~~~~~i~~~ 253 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKA-GKKSYTLSVGEINPA 253 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHT-T-EEEEEEESS--GG
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCEEEEEEECCCCHH
Confidence 478899999865 4777899999999984 888888888886554
No 141
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=67.77 E-value=13 Score=28.38 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.9
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
+||.+ ..||...+++.+.+ .|++++++.-+ +++.++|+||+..|
T Consensus 2 ~~~~~-~~gn~~~l~~~l~~-----~g~~v~v~~~~------------------------~~l~~~d~lii~G~ 45 (196)
T TIGR01855 2 VIIDY-GVGNLGSVKRALKR-----VGAEPVVVKDS------------------------KEAELADKLILPGV 45 (196)
T ss_pred EEEec-CCcHHHHHHHHHHH-----CCCcEEEEcCH------------------------HHhccCCEEEECCC
Confidence 44543 36888888888764 26777776521 25678999999775
No 142
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=67.68 E-value=46 Score=25.60 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=43.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCC--CChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT--ITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~aD~iiigsP~y 81 (203)
||.||-.|.. +-..|.+++.+ .|.+|+-+-=+...... . ..-+..+.|.-+ ...+++...|+||-+.-.|
T Consensus 2 KIaiIgAsG~-----~Gs~i~~EA~~-RGHeVTAivRn~~K~~~-~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 2 KIAIIGASGK-----AGSRILKEALK-RGHEVTAIVRNASKLAA-R-QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred eEEEEecCch-----hHHHHHHHHHh-CCCeeEEEEeChHhccc-c-ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 8999998853 33444444444 37777654322211100 0 000111222211 1247899999999998888
Q ss_pred CCCcHHHHHHHHHHh
Q 028847 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~lk~fld~~ 96 (203)
+..--.....-++.+
T Consensus 74 ~~~~~~~~~k~~~~l 88 (211)
T COG2910 74 ASDNDELHSKSIEAL 88 (211)
T ss_pred CCChhHHHHHHHHHH
Confidence 644433222224443
No 143
>PRK05665 amidotransferase; Provisional
Probab=67.61 E-value=59 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=9.8
Q ss_pred hhhccCeEEEeccc
Q 028847 67 ELAEADGILLGFPT 80 (203)
Q Consensus 67 ~l~~aD~iiigsP~ 80 (203)
++.++|+|||...-
T Consensus 54 ~~~~~dgiiitGs~ 67 (240)
T PRK05665 54 DDEKFDAYLVTGSK 67 (240)
T ss_pred CcccCCEEEECCCC
Confidence 46679998886443
No 144
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=67.50 E-value=61 Score=27.06 Aligned_cols=56 Identities=14% Similarity=0.018 Sum_probs=28.9
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 19 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 19 la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
+...++..+.+ .|+++.+.+-............... .....+.+.++|.|++..|.
T Consensus 28 mG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~G~~-----~~s~~eaa~~ADVVvLaVPd 83 (330)
T PRK05479 28 QGHAHALNLRD-SGVDVVVGLREGSKSWKKAEADGFE-----VLTVAEAAKWADVIMILLPD 83 (330)
T ss_pred HHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHCCCe-----eCCHHHHHhcCCEEEEcCCH
Confidence 55666666666 3777766544322111111111110 00113457889999999993
No 145
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=67.40 E-value=73 Score=26.61 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=50.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCC----CCCCCCC-----CC-hhhhhccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAG----PKSDVPT-----IT-PNELAEAD 72 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~----~~~~~~~-----~~-~~~l~~aD 72 (203)
+||.||-+-..|. .||..+++ +|.+|.+.--.+.....+... +.. |.-..|. .+ .+.+..+|
T Consensus 2 ~kI~ViGaGswGT--ALA~~la~-----ng~~V~lw~r~~~~~~~i~~~-~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 2 MKIAVIGAGSWGT--ALAKVLAR-----NGHEVRLWGRDEEIVAEINET-RENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred ceEEEEcCChHHH--HHHHHHHh-----cCCeeEEEecCHHHHHHHHhc-CcCccccCCccCCcccccccCHHHHHhcCC
Confidence 4888765444563 35555554 366787766543222222221 111 1111121 12 33455699
Q ss_pred eEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC
Q 028847 73 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~ 119 (203)
.||++.|... ++.+++++. ..++.+...+.++-|-.
T Consensus 74 ~iv~avPs~~------~r~v~~~l~-----~~l~~~~~iv~~sKGie 109 (329)
T COG0240 74 IIVIAVPSQA------LREVLRQLK-----PLLLKDAIIVSATKGLE 109 (329)
T ss_pred EEEEECChHH------HHHHHHHHh-----hhccCCCeEEEEecccc
Confidence 9999999853 556666653 13444445555555543
No 146
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=67.26 E-value=56 Score=25.26 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=32.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe-cc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG-FP 79 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig-sP 79 (203)
+|+++.... ..|..+.+.+.+ .|+++.+++......++ ..+.+.++|+|||. .|
T Consensus 2 ~ilv~d~~~-~~~~~~~~~l~~-----~G~~~~~~~~~~~~~~~----------------~~~~~~~~dgliisGGp 56 (214)
T PRK07765 2 RILVVDNYD-SFVFNLVQYLGQ-----LGVEAEVWRNDDPRLAD----------------EAAVAAQFDGVLLSPGP 56 (214)
T ss_pred eEEEEECCC-cHHHHHHHHHHH-----cCCcEEEEECCCcCHHH----------------HHHhhcCCCEEEECCCC
Confidence 688887664 445555555543 37788888765421111 01235679999994 55
No 147
>PRK13059 putative lipid kinase; Reviewed
Probab=67.19 E-value=34 Score=27.78 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=26.4
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|+++|+--. .|...+..+.+.+.+.+. |.++.++....
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~~~~ 42 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEK-GYLVVPYRISL 42 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHC-CcEEEEEEccC
Confidence 5887776444 345566777888888874 77777666543
No 148
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=66.92 E-value=11 Score=31.59 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=28.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCce-EEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVE-AKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~-v~~~~l~~ 42 (203)
+|||||+++|..+--...|+++++.+++. |.+ +.+.|...
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~-g~~~~~~~d~~~ 44 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQK-GIKDVIVCDLFG 44 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhc-CCCcEEEEEhHH
Confidence 35899999886434556788899999874 665 55556653
No 149
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.86 E-value=35 Score=22.66 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=32.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
...+.++|.||+-|-.-.......+|..-.+. |+|+...-+.|
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~----------~ip~~~~~~~~ 85 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKKY----------GIPIIYSRSRG 85 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHHc----------CCcEEEECCCC
Confidence 45899999999999888888888888776654 77777553333
No 150
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=66.85 E-value=11 Score=23.56 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=27.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|||.++-.|+++.+.+++++|++...... +++.+.+-
T Consensus 7 K~IelvGtSp~S~d~Ai~~Ai~RA~~t~~--~l~wfeV~ 43 (71)
T COG3360 7 KKIELVGTSPTSIDAAIANAIARAADTLD--NLDWFEVV 43 (71)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhhhh--cceEEEEE
Confidence 58889989999999999999987765421 34444443
No 151
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=66.83 E-value=61 Score=30.30 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=41.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe-ccc--
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG-FPT-- 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig-sP~-- 80 (203)
|||+|- ...+.|..|++.+.+.... ++++.+++......+ ..+.+..+|+|||+ .|-
T Consensus 7 ~iL~ID-~~DSft~nl~~~l~~~~g~--~~~v~vv~~d~~~~~-----------------~~~~l~~~D~VVIspGPG~p 66 (742)
T TIGR01823 7 HVLFID-SYDSFTYNVVRLLEQQTDI--SVHVTTVHSDTFQDQ-----------------LLELLPLFDAIVVGPGPGNP 66 (742)
T ss_pred eEEEEe-CCcchHHHHHHHHHHhcCC--CcEEEEEeCCCCchh-----------------hhhhhcCCCEEEECCCCCCc
Confidence 677765 4456889999988886532 356677665432110 12346689999994 332
Q ss_pred CCCCcHHHHHHHHHH
Q 028847 81 RFGMMAAQFKAFLDA 95 (203)
Q Consensus 81 y~~~~~~~lk~fld~ 95 (203)
++..-.+.++.+++.
T Consensus 67 ~~~~~~~i~~~i~~~ 81 (742)
T TIGR01823 67 NNAQDMGIISELWEL 81 (742)
T ss_pred cchhhhHHHHHHHHh
Confidence 122334445555543
No 152
>PRK08727 hypothetical protein; Validated
Probab=66.73 E-value=59 Score=25.40 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=34.9
Q ss_pred EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 5 VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 5 ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
.+++||.. +|.|. +++++...+.+ .|..+.++.+.+.... ... ..+.+..+|.|||=
T Consensus 43 ~l~l~G~~G~GKTh-L~~a~~~~~~~-~~~~~~y~~~~~~~~~-~~~-------------~~~~l~~~dlLiID 100 (233)
T PRK08727 43 WLYLSGPAGTGKTH-LALALCAAAEQ-AGRSSAYLPLQAAAGR-LRD-------------ALEALEGRSLVALD 100 (233)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCcEEEEeHHHhhhh-HHH-------------HHHHHhcCCEEEEe
Confidence 46777765 78888 56666666665 3777777776553211 000 13467778888884
No 153
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=66.42 E-value=23 Score=28.34 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=10.9
Q ss_pred hhhhccCeEEEec
Q 028847 66 NELAEADGILLGF 78 (203)
Q Consensus 66 ~~l~~aD~iiigs 78 (203)
+++.++|+|||-.
T Consensus 34 ~~L~~~DgLILPG 46 (248)
T PLN02832 34 EQLEGVSGLIIPG 46 (248)
T ss_pred HHhccCCEEEeCC
Confidence 4688999999976
No 154
>PRK10125 putative glycosyl transferase; Provisional
Probab=66.11 E-value=18 Score=30.83 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=32.9
Q ss_pred eEEEEEec-CcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYS-MYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S-~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|||-|..+ ..|.+++++-.+++.+.+ .|+++.+.-....
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~~~ 41 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGYGK 41 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEecCC
Confidence 89988866 478999999999999988 4999998887654
No 155
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.08 E-value=10 Score=27.75 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
+.+.++|.||++.|.+. ++.+++++.+ .++.....++++.|-
T Consensus 65 ~a~~~ad~IiiavPs~~------~~~~~~~l~~-----~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 65 EALEDADIIIIAVPSQA------HREVLEQLAP-----YLKKGQIIISATKGF 106 (157)
T ss_dssp HHHTT-SEEEE-S-GGG------HHHHHHHHTT-----TSHTT-EEEETS-SE
T ss_pred HHhCcccEEEecccHHH------HHHHHHHHhh-----ccCCCCEEEEecCCc
Confidence 46789999999999865 5778888853 344455555555554
No 156
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=66.06 E-value=70 Score=25.98 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.1
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
.+.++|.||+++|.+ .++..++.+.
T Consensus 68 ~~~~~D~vi~~v~~~------~~~~v~~~l~ 92 (325)
T PRK00094 68 ALADADLILVAVPSQ------ALREVLKQLK 92 (325)
T ss_pred HHhCCCEEEEeCCHH------HHHHHHHHHH
Confidence 457899999999973 4566665553
No 157
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.93 E-value=21 Score=26.17 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=62.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||.+|=- | .|...++..|.+ .|.++..+|......+.+.+. ..... ....+-+.++|.||+..|-
T Consensus 1 m~~Ig~IGl---G---~mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~-g~~~~----~s~~e~~~~~dvvi~~v~~- 67 (163)
T PF03446_consen 1 MMKIGFIGL---G---NMGSAMARNLAK-AGYEVTVYDRSPEKAEALAEA-GAEVA----DSPAEAAEQADVVILCVPD- 67 (163)
T ss_dssp -BEEEEE-----S---HHHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHT-TEEEE----SSHHHHHHHBSEEEE-SSS-
T ss_pred CCEEEEEch---H---HHHHHHHHHHHh-cCCeEEeeccchhhhhhhHHh-hhhhh----hhhhhHhhcccceEeeccc-
Confidence 358887742 2 233444444444 388999988654222222211 00000 0013456788999998875
Q ss_pred CCCcHHHHHHHHHH--hcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 82 FGMMAAQFKAFLDA--TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 82 ~~~~~~~lk~fld~--~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
+..++..++. +.. ...+|+.+.-.+|..- ...+.+.+.+...|..++..++.
T Consensus 68 ----~~~v~~v~~~~~i~~----~l~~g~iiid~sT~~p------~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 68 ----DDAVEAVLFGENILA----GLRPGKIIIDMSTISP------ETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp ----HHHHHHHHHCTTHGG----GS-TTEEEEE-SS--H------HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----chhhhhhhhhhHHhh----ccccceEEEecCCcch------hhhhhhhhhhhhccceeeeeeee
Confidence 5667888876 321 1234554443333321 22466778888899999887654
No 158
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.93 E-value=24 Score=26.00 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=65.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhcc----CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASV----EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~----~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
|-|++|+--|..|.|.-+-+..-+.+.-+ -|++.++--+..-.-.--+.-.....++.+..++....+.++++|+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 46999999998999988877766555321 13333222222110000000000001112222345578999999999
Q ss_pred cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 78 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 78 sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.-+-|-+--..+..|+-.+... .+.+-++.++++
T Consensus 101 yDitNeeSf~svqdw~tqIkty----sw~naqvilvgn 134 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTY----SWDNAQVILVGN 134 (193)
T ss_pred EecCCHHHHHHHHHHHHHheee----eccCceEEEEec
Confidence 9988887777788888877533 567888888776
No 159
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=65.90 E-value=16 Score=31.01 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||.||-+.. .|...++..+.+ .|.+|.+++..+.. . ..+.+.++|.||+++|+.
T Consensus 99 ~~I~IiGG~G-----lmG~slA~~l~~-~G~~V~~~d~~~~~--~----------------~~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 99 RPVVIVGGKG-----QLGRLFAKMLTL-SGYQVRILEQDDWD--R----------------AEDILADAGMVIVSVPIH 153 (374)
T ss_pred ceEEEEcCCC-----hhhHHHHHHHHH-CCCeEEEeCCCcch--h----------------HHHHHhcCCEEEEeCcHH
Confidence 5777765342 234444455554 37788888764321 0 123467899999999986
No 160
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.80 E-value=15 Score=30.15 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=30.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|++|.|++-....+...+++.+.+.+++ .|+++.+..
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~ 40 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDE 40 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 6689999888788899999999998887 488876654
No 161
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=65.69 E-value=15 Score=30.44 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=35.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC---CchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET---LSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
||+.|+..|..| ..+|+.+++.+.. +++..... .+... ..+.+.+||.+||..+
T Consensus 4 m~iaii~~t~~G--~~la~~l~~~l~~------~~~~~~~~~~~~~~~~---------------~~~~f~~~d~iIfI~A 60 (315)
T PRK05788 4 MKIAIICATERG--RDLAERLKAKLKA------DCYTSEKLEYEGFADA---------------FEEAFGCYDALIFIMA 60 (315)
T ss_pred ceEEEEEECccH--HHHHHHHHHhccc------ceecchhhccCCHHHH---------------HHHHHhcCCeEEEEEC
Confidence 489999998877 7889999988853 12221111 11111 2456788999999876
Q ss_pred c
Q 028847 80 T 80 (203)
Q Consensus 80 ~ 80 (203)
+
T Consensus 61 ~ 61 (315)
T PRK05788 61 T 61 (315)
T ss_pred h
Confidence 5
No 162
>PRK04155 chaperone protein HchA; Provisional
Probab=65.07 E-value=35 Score=27.90 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=23.2
Q ss_pred ceEEEEEecC------------cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSM------------YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~------------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|||||..|. +|+-..=+-.-...|++ .|++|++..+..
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~-AG~eVdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHK-AGFEFDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 4899988763 23211111122466666 499999988754
No 163
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=65.04 E-value=46 Score=27.62 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~~~~lk~ 91 (203)
+|++...+...++.|++ .|++++++++....|-+-- ...+.+.+++.||+.-=-+ .|++.+++-.
T Consensus 209 ~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pld~~-------------~i~~~~~~~~~vv~vEe~~~~gGlg~~la~ 274 (327)
T PRK09212 209 FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPLDTE-------------TIIESVKKTNRLVVVEEGWPFAGVGAEIAA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCCCHH-------------HHHHHHHhCCeEEEEcCCCCCCCHHHHHHH
Confidence 46666677777777776 4899999999876541110 0134677888888765555 6888888888
Q ss_pred HHHHh
Q 028847 92 FLDAT 96 (203)
Q Consensus 92 fld~~ 96 (203)
++...
T Consensus 275 ~l~~~ 279 (327)
T PRK09212 275 LIMKE 279 (327)
T ss_pred HHHHh
Confidence 88654
No 164
>PRK08818 prephenate dehydrogenase; Provisional
Probab=64.45 E-value=19 Score=30.51 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.6
Q ss_pred hhhhccCeEEEecccC
Q 028847 66 NELAEADGILLGFPTR 81 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y 81 (203)
+.+.++|.|||++|+-
T Consensus 47 ~~v~~aDlVilavPv~ 62 (370)
T PRK08818 47 TLLQRADVLIFSAPIR 62 (370)
T ss_pred HHhcCCCEEEEeCCHH
Confidence 4578999999999983
No 165
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=64.30 E-value=48 Score=24.68 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=51.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhh--hhccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNE--LAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~aD~iiigs 78 (203)
||+|++|+-....-..+.+ .-.+.+++. |.++++......... ......... ..+....+. ..+||+|++-.
T Consensus 1 ~~~~i~i~~~~g~e~~E~~--~p~~~l~~a-g~~v~~~~~~~~~~~-~~~~~g~~~--~~~~~~~~~~~~~~ydal~ipG 74 (188)
T COG0693 1 MMKKIAILLADGFEDLELI--VPYDVLRRA-GFEVDVASPEGKGKS-VTSKRGGLV--VADDKAFDDADAADYDALVIPG 74 (188)
T ss_pred CCceeEEEecCcceehhHh--HHHHHHHHC-CCeEEEEecCCCcce-eecccCcce--EecccccccCCHhHCCEEEECC
Confidence 5668887665443223322 234556653 777877766642000 000000000 001011122 56999999976
Q ss_pred ccCC--CCcH-HHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 79 PTRF--GMMA-AQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 79 P~y~--~~~~-~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-.++ ...+ ..+..|+.+.. -.||+++.++++
T Consensus 75 G~~~~~~~~~~~~~~~~v~~~~-------~~~k~vaaIC~g 108 (188)
T COG0693 75 GDHGPEYLRPDPDLLAFVRDFY-------ANGKPVAAICHG 108 (188)
T ss_pred CccchhhccCcHHHHHHHHHHH-------HcCCEEEEEChh
Confidence 5321 1122 56777777763 358888887765
No 166
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.22 E-value=4.1 Score=31.17 Aligned_cols=37 Identities=30% Similarity=0.304 Sum_probs=27.2
Q ss_pred CCceEEEEEecCcch-HHHHHHHHHHHhhccCCceEEEE
Q 028847 1 MATKVYIVYYSMYGH-VEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 1 mm~kilIiy~S~~G~-T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
||+|++|+|+--.|+ -+..|..+...+.+ .+..|++-
T Consensus 2 m~~kalIvwgGW~gHeP~~~ahi~~~~l~e-e~f~vev~ 39 (239)
T COG3828 2 MEKKALIVWGGWRGHEPETRAHIIKGPLEE-EGFLVEVG 39 (239)
T ss_pred CCcceEEEEccccCCCchhcchhccCcChh-hceEEEec
Confidence 678999999987776 56677777777776 46666543
No 167
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.15 E-value=8.4 Score=31.62 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=31.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+++..+..|.++..+..+++.+.+. |.+|.++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~-G~~v~v~~~~ 38 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARR-GHEVHFITSS 38 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhc-CCceEEEecC
Confidence 899998777788888899999999884 8999988653
No 168
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=63.77 E-value=30 Score=27.02 Aligned_cols=14 Identities=43% Similarity=0.422 Sum_probs=10.8
Q ss_pred hhhhccCeEEEecc
Q 028847 66 NELAEADGILLGFP 79 (203)
Q Consensus 66 ~~l~~aD~iiigsP 79 (203)
..+.++|.|.+|.-
T Consensus 80 ~~l~~~d~IyVgGG 93 (224)
T COG3340 80 NKLMKADIIYVGGG 93 (224)
T ss_pred HhhhhccEEEECCc
Confidence 35777999999853
No 169
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=63.31 E-value=52 Score=24.52 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=38.7
Q ss_pred cCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe-cccCCCCcHHHH
Q 028847 11 SMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG-FPTRFGMMAAQF 89 (203)
Q Consensus 11 S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig-sP~y~~~~~~~l 89 (203)
...++|..+.+++.+ .|++++++.+...... ..+++.++|+|||. +|-.... ...+
T Consensus 5 ~~~~~~~~l~~~l~~-----~~~~~~v~~~~~~~~~-----------------~~~~~~~~d~iii~Gg~~~~~d-~~~~ 61 (192)
T PF00117_consen 5 NGDSFTHSLVRALRE-----LGIDVEVVRVDSDFEE-----------------PLEDLDDYDGIIISGGPGSPYD-IEGL 61 (192)
T ss_dssp SSHTTHHHHHHHHHH-----TTEEEEEEETTGGHHH-----------------HHHHTTTSSEEEEECESSSTTS-HHHH
T ss_pred CCHHHHHHHHHHHHH-----CCCeEEEEECCCchhh-----------------hhhhhcCCCEEEECCcCCcccc-cccc
Confidence 344577777777655 3778999988752110 01147789988886 4444344 5566
Q ss_pred HHHHHHh
Q 028847 90 KAFLDAT 96 (203)
Q Consensus 90 k~fld~~ 96 (203)
+.+++++
T Consensus 62 ~~~i~~~ 68 (192)
T PF00117_consen 62 IELIREA 68 (192)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 6777665
No 170
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=63.31 E-value=54 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+||+|+..+. ++..+...+++. |+++-.++..
T Consensus 1 ~~kkili~g~g~------~~~~~~~aa~~l-G~~vv~~~~~ 34 (449)
T TIGR00514 1 MLDKILIANRGE------IALRILRACKEL-GIKTVAVHST 34 (449)
T ss_pred CcceEEEeCCCH------HHHHHHHHHHHc-CCeEEEEECh
Confidence 789999985442 455566666663 8888777653
No 171
>PRK00074 guaA GMP synthase; Reviewed
Probab=62.56 E-value=32 Score=30.51 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||.+|+||-+ .+.+|..+++.+.+ + |+.++++...
T Consensus 2 ~~~~i~vlD~-Gsq~~~li~r~lre-l----g~~~~v~p~~ 36 (511)
T PRK00074 2 HHDKILILDF-GSQYTQLIARRVRE-L----GVYSEIVPYD 36 (511)
T ss_pred CCCEEEEEEC-CCCcHHHHHHHHHH-C----CCeEEEEECC
Confidence 3567888864 34567888888766 2 6677777543
No 172
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.46 E-value=85 Score=25.64 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=28.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++.+++++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 72 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAA-GFKSEVVRLPET 72 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 455666555556667777777777774 999999999864
No 173
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=62.06 E-value=51 Score=22.96 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=41.8
Q ss_pred eEEEEEecCcch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhcc-CeEEEeccc
Q 028847 4 KVYIVYYSMYGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEA-DGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-D~iiigsP~ 80 (203)
|++||+-...|. .+ .+.+.+.+... +.+++++..........+. ....+..+ |.||++.-
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~-~~~~~~~~t~~~~~~~~~~-------------~~~~~~~~~~~ivv~GG- 63 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAA-GIDYEVIETESAGHAEALA-------------RILALDDYPDVIVVVGG- 63 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHT-TCEEEEEEESSTTHHHHHH-------------HHHHHTTS-SEEEEEES-
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHc-CCceEEEEEeccchHHHHH-------------HHHhhccCccEEEEEcC-
Confidence 577777665543 33 47777888774 7788888776533322221 02356666 78877654
Q ss_pred CCCCcHHHHHHHHHHh
Q 028847 81 RFGMMAAQFKAFLDAT 96 (203)
Q Consensus 81 y~~~~~~~lk~fld~~ 96 (203)
-+.+...++.+
T Consensus 64 -----DGTl~~vv~~l 74 (130)
T PF00781_consen 64 -----DGTLNEVVNGL 74 (130)
T ss_dssp -----HHHHHHHHHHH
T ss_pred -----ccHHHHHHHHH
Confidence 34455555555
No 174
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=62.02 E-value=31 Score=24.79 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=32.2
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+.. ...++++.++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~nK 113 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVANK 113 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEC
Confidence 4467899999998876554433456777777642 2346888888775
No 175
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=61.95 E-value=46 Score=24.31 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=43.1
Q ss_pred ceEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh
Q 028847 3 TKVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA 69 (203)
Q Consensus 3 ~kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (203)
+||+||+|-. +|+ -+.+-+.+.+...+ .|++++++.-+.. ..+++. ..+...
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E--GelId~------------I~~a~~ 66 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAE-LGVELEFFQSNHE--GELIDR------------IHEARD 66 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCcH--HHHHHH------------HHhccc
Confidence 4899999874 353 34455555565555 4888887765432 111110 122334
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
++|+|||=---| ...|-.++.-+..+
T Consensus 67 ~~dgiiINpga~-THtSiAl~DAl~~~ 92 (146)
T PRK05395 67 GADGIIINPGAY-THTSVALRDALAAV 92 (146)
T ss_pred CCcEEEECchHH-HHHHHHHHHHHHcC
Confidence 679888865544 23344455555554
No 176
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.89 E-value=80 Score=25.17 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChh--hhhccCeEEEe
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPN--ELAEADGILLG 77 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--~l~~aD~iiig 77 (203)
||.||-|+---.-| |..+++.+.+......++++.++--...- ++..-. .... +-.+-|.+|+.
T Consensus 1 mvvKiGiiKlGNig-~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~------------~~~~~~~~~~pDf~i~i 67 (277)
T PRK00994 1 MVVKIGIIKLGNIG-MSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEE------------VVKKMLEEWKPDFVIVI 67 (277)
T ss_pred CeEEEEEEEecccc-hHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHH------------HHHHHHHhhCCCEEEEE
Confidence 66688877533333 66788888887766557777666544321 221110 0011 12478999999
Q ss_pred cccCCCCcHHHHH--HHHHHhcccccccCCCCCeEEEEEc
Q 028847 78 FPTRFGMMAAQFK--AFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 78 sP~y~~~~~~~lk--~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
|| |...|++-+ ..+.. .|.|+.+++-
T Consensus 68 sP--N~a~PGP~~ARE~l~~----------~~iP~IvI~D 95 (277)
T PRK00994 68 SP--NPAAPGPKKAREILKA----------AGIPCIVIGD 95 (277)
T ss_pred CC--CCCCCCchHHHHHHHh----------cCCCEEEEcC
Confidence 99 556665533 33332 3667777643
No 177
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=61.63 E-value=36 Score=28.58 Aligned_cols=37 Identities=38% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+||.|+-+|.+.-.+ | ...|..++.+|+.++.-..
T Consensus 1 ~~~kV~IvGasGYtG~E-L----~rlL~~Hp~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLE-L----LRLLAGHPDVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHH-H----HHHHhcCCCeEEEEeechh
Confidence 67799999999754322 3 3334333555655444433
No 178
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=61.02 E-value=26 Score=26.99 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=48.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+.+.+++.++.+++-.++..+.+.+++. +++.+..-+...+.+- . ..+-+..+|.+||-+-.++
T Consensus 129 k~vi~L~d~~vs~SGel~~~i~~~mK~~-~I~g~~~lvk~~D~eL-k--------------~~e~VaTsD~~IIdsv~~v 192 (211)
T COG2454 129 KSVIFLFDAPVSKSGELAGRIEEKMKSL-GIPGEASLVKNADFEL-K--------------ELEVVATSDSGIIDSVKRV 192 (211)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhc-CCCceeEeccCcCHHH-H--------------hcCceeecCeeeeeehhHH
Confidence 3567778888888888999999888763 6665544444322110 0 1346778999999997777
Q ss_pred CCcHHHHHH
Q 028847 83 GMMAAQFKA 91 (203)
Q Consensus 83 ~~~~~~lk~ 91 (203)
-.+|..+-.
T Consensus 193 Vdi~~~i~~ 201 (211)
T COG2454 193 VDIPAEIME 201 (211)
T ss_pred HhhHHHHHH
Confidence 777665443
No 179
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=60.98 E-value=20 Score=24.14 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=32.1
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 20 AEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 20 a~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
++.+++.+.+..+-++.++|+.+. -.-+|.+||+|-.=.-++-+......+.+
T Consensus 2 ~~~i~~~l~~kka~dI~vldv~~~------------------------~~~~dy~VI~Tg~S~rh~~aia~~v~~~~ 54 (99)
T TIGR00090 2 LELIVEALDDKKAEDIVVLDVRGK------------------------SSIADYFVIASGTSSRHVKAIADNVEEEL 54 (99)
T ss_pred HHHHHHHHHHcCCCCEEEEECCCC------------------------CcccCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 345555555544668999999863 23568999998665444444433333333
No 180
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=60.85 E-value=46 Score=27.27 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||+|+.+||--.. |+-.+..+.+.+.+++. |.+++.+-....
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~~t~~~ 44 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVRVTEEA 44 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEEEeecC
Confidence 5678888885554 46888899999999984 888887776654
No 181
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=60.45 E-value=61 Score=23.35 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=31.8
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++||....-...--..++.|+..+.. ...++.++.++++-
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~pvivv~nK 118 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----HSNSNMTIMLIGNK 118 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEEC
Confidence 456789999998887654444566777776642 12357888888874
No 182
>PRK13566 anthranilate synthase; Provisional
Probab=60.41 E-value=58 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=23.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||+||-+- .+++..+++.+.+ .|+++.++....
T Consensus 527 ~~IlvID~~-dsf~~~l~~~Lr~-----~G~~v~vv~~~~ 560 (720)
T PRK13566 527 KRVLLVDHE-DSFVHTLANYFRQ-----TGAEVTTVRYGF 560 (720)
T ss_pred CEEEEEECC-CchHHHHHHHHHH-----CCCEEEEEECCC
Confidence 378888755 4677777777755 377888887754
No 183
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=60.14 E-value=15 Score=30.36 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=25.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||||+|+-+...|+.. .+-.+++.+.+. |.++.++-...
T Consensus 1 ~~~i~i~~~g~gG~~~-~~~~la~~L~~~-g~ev~vv~~~~ 39 (357)
T PRK00726 1 MKKILLAGGGTGGHVF-PALALAEELKKR-GWEVLYLGTAR 39 (357)
T ss_pred CcEEEEEcCcchHhhh-HHHHHHHHHHhC-CCEEEEEECCC
Confidence 2488887655556665 555666777663 88888875543
No 184
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=59.97 E-value=32 Score=28.74 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=35.1
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCCCch
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPETLSE 46 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~ 46 (203)
+++-||.+|..| ++..+++.+.+.++++ |.+.-++-+.+..+.
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~-gkk~y~i~~~~in~~ 276 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEA-GKTVLIILLSNVSPA 276 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCHH
Confidence 468899999876 4888999999999984 888888888876553
No 185
>PRK15005 universal stress protein F; Provisional
Probab=59.86 E-value=22 Score=24.94 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=26.8
Q ss_pred CCceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++|||+-+ +|..+.+.++.+...+.+.. .+.++.++.+-+
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~-~~~~l~ll~v~~ 42 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKI-DDAEVHFLTVIP 42 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhc-cCCeEEEEEEEc
Confidence 777888765 56655456666665555544 467888777754
No 186
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=59.82 E-value=52 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.0
Q ss_pred CceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|++||+-...| ...+..+.+.+.+.+ .|++++++....
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~ 42 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWE 42 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecC
Confidence 4688888866444 456777788888877 488877765544
No 187
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=59.72 E-value=11 Score=30.05 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=39.1
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCC-ChhhhhccCeEEEe
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI-TPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aD~iiig 77 (203)
+-+++||.+ .|-|.. |.+|...+.+ .|+.|-++.+++.- ..+...... ...+. ....+..+|.+||=
T Consensus 106 ~nl~l~G~~G~GKThL-a~Ai~~~l~~-~g~sv~f~~~~el~-~~Lk~~~~~----~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 106 ENLVLLGPPGVGKTHL-AIAIGNELLK-AGISVLFITAPDLL-SKLKAAFDE----GRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred CcEEEECCCCCcHHHH-HHHHHHHHHH-cCCeEEEEEHHHHH-HHHHHHHhc----CchHHHHHHHhhcCCEEEEe
Confidence 457788887 688884 5555555555 48899998887641 111111100 01011 13348999999975
No 188
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=59.69 E-value=14 Score=26.79 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=27.4
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 21 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 21 ~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
+.+.+.+++ .|++++.+++.+..... ..+.+.+||+|+|+
T Consensus 3 ~~~~~~f~~-~g~~v~~l~~~~~~~~~----------------~~~~i~~ad~I~~~ 42 (154)
T PF03575_consen 3 EKFRKAFRK-LGFEVDQLDLSDRNDAD----------------ILEAIREADAIFLG 42 (154)
T ss_dssp HHHHHHHHH-CT-EEEECCCTSCGHHH----------------HHHHHHHSSEEEE-
T ss_pred HHHHHHHHH-CCCEEEEEeccCCChHH----------------HHHHHHhCCEEEEC
Confidence 456677777 48898888887653332 24688999999997
No 189
>PRK08655 prephenate dehydrogenase; Provisional
Probab=59.66 E-value=49 Score=28.68 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=40.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.||-++. .|...++..+.+ .|.++.+++.............+.. ......+.+.++|.||+++|..
T Consensus 2 kI~IIGG~G-----~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~----~~~~~~e~~~~aDvVIlavp~~-- 69 (437)
T PRK08655 2 KISIIGGTG-----GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVE----YANDNIDAAKDADIVIISVPIN-- 69 (437)
T ss_pred EEEEEecCC-----HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCe----eccCHHHHhccCCEEEEecCHH--
Confidence 787765332 245555555555 3778887775432111111111110 0001134577899999999973
Q ss_pred CcHHHHHHHHHHhc
Q 028847 84 MMAAQFKAFLDATG 97 (203)
Q Consensus 84 ~~~~~lk~fld~~~ 97 (203)
.+..+++.+.
T Consensus 70 ----~~~~vl~~l~ 79 (437)
T PRK08655 70 ----VTEDVIKEVA 79 (437)
T ss_pred ----HHHHHHHHHH
Confidence 4455666653
No 190
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=59.37 E-value=84 Score=24.57 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=54.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+-||.+|-.-.-| |..+.+.+.+......++++.++--...--+.|.++. ....-+-.+.|.||+++|-
T Consensus 1 ~vvkig~ik~GniG-ts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaa---------v~~~~e~~~pDfvi~isPN 70 (277)
T COG1927 1 MVVKIGFIKCGNIG-TSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAA---------VTEMLEEFNPDFVIYISPN 70 (277)
T ss_pred CeeEEEEEEecccc-hHHHHHHHHHhhcccCCceEEEeccccccChHHHHHH---------HHHHHHhcCCCEEEEeCCC
Confidence 55677777544444 5667888887765556788877765543323333210 0012234577999999996
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
-..-=|...+..+. -.+.|+.+++-
T Consensus 71 paaPGP~kARE~l~----------~s~~PaiiigD 95 (277)
T COG1927 71 PAAPGPKKAREILS----------DSDVPAIIIGD 95 (277)
T ss_pred CCCCCchHHHHHHh----------hcCCCEEEecC
Confidence 44333333333332 24788887643
No 191
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=59.02 E-value=45 Score=27.84 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.3
Q ss_pred hhhccCeEEEecccC
Q 028847 67 ELAEADGILLGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
...+.|++++++|..
T Consensus 65 ~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 65 ILAGADVVFLALPHG 79 (343)
T ss_pred HhcCCCEEEECCCcH
Confidence 446789999999985
No 192
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=58.68 E-value=39 Score=24.40 Aligned_cols=63 Identities=13% Similarity=-0.041 Sum_probs=42.2
Q ss_pred CCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCCCccceecCCCCCCCCHHHHH
Q 028847 104 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELA 183 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 183 (203)
.|+||++.+++-.++-.+. .+.+.+...|..++-....|. +. ...+..|-|+++
T Consensus 2 ~l~gkKviiiGdRDGiPgp------Aie~c~~~~gaevvfs~TeCF--------Vc------------taagaMDLEnQ~ 55 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGP------AIEECVKTAGAEVVFSSTECF--------VC------------TAAGAMDLENQQ 55 (150)
T ss_pred ccCCcEEEEEecCCCCCcH------HHHHHHHhcCceEEEEeeeEE--------Ee------------cccccccHHHHH
Confidence 4789999999887765432 244677778888875543320 00 112568888899
Q ss_pred HHHHHHHHH
Q 028847 184 QAFHQGKYF 192 (203)
Q Consensus 184 ~~~~~g~~l 192 (203)
+.++++++.
T Consensus 56 rvk~~aEk~ 64 (150)
T PF04723_consen 56 RVKDLAEKY 64 (150)
T ss_pred HHHHHHHhc
Confidence 888888764
No 193
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=58.57 E-value=36 Score=24.58 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=32.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+++|+.-|. .+.+-++..|.+ .|+.+...+-...+ ..+.+.+||.||-+++.-
T Consensus 30 ~v~VvGrs~-----~vG~pla~lL~~-~gatV~~~~~~t~~-------------------l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 30 KVLVVGRSG-----IVGAPLQCLLQR-DGATVYSCDWKTIQ-------------------LQSKVHDADVVVVGSPKP 82 (140)
T ss_pred EEEEECCCc-----hHHHHHHHHHHH-CCCEEEEeCCCCcC-------------------HHHHHhhCCEEEEecCCC
Confidence 555554443 344444444444 37777777643321 134689999999999876
No 194
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=58.46 E-value=22 Score=32.01 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred eEEEEEecCcc--hHHHHHHHHHHHhhccCCceEE
Q 028847 4 KVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAK 36 (203)
Q Consensus 4 kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~ 36 (203)
|+++|-.+++| +|...++.+++..++ .|+++.
T Consensus 2 ~ilavtacp~GiAht~mAaeaL~~AA~~-~G~~i~ 35 (563)
T PRK10712 2 KTLLIIDANLGQARAYMAKTLLGAAAAK-AGLEII 35 (563)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHH-CCCccc
Confidence 78888888887 466666777777777 477664
No 195
>PRK06545 prephenate dehydrogenase; Validated
Probab=58.31 E-value=1.1e+02 Score=25.63 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 19 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 19 la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
|...++..+.+ .|.++.+++..... ............+.......+.+.++|.||+++|.. .+..++..+.
T Consensus 11 iG~siA~~L~~-~G~~v~i~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~------~~~~vl~~l~ 81 (359)
T PRK06545 11 IGGSLALAIKA-AGPDVFIIGYDPSA-AQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD------ATAALLAELA 81 (359)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCCH-HHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH------HHHHHHHHHh
Confidence 55556666665 37788888765432 111111111101110000123467899999999984 4556666653
No 196
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=57.87 E-value=23 Score=28.39 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=30.0
Q ss_pred eEEEEEec-------CcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYS-------MYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S-------~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||++|..+ ..|..++.+..+++.+.+. |.+|.++.....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~V~v~~~~~~ 47 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVAR-GHEVTLFASGDS 47 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhc-CceEEEEecCCC
Confidence 89998754 3567778888888888874 899999876553
No 197
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=57.81 E-value=71 Score=26.55 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~~~~lk~ 91 (203)
+|++-..|...++.|++ .|++++++|+....|-+.- .....+.+...||+.---+ .+++-+.+-.
T Consensus 209 ~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPlD~~-------------~i~~~~~~t~~vv~vEE~~~~gGlG~~va~ 274 (327)
T CHL00144 209 YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPLDLG-------------TISKSVKKTHKVLIVEECMKTGGIGAELIA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCCCHH-------------HHHHHHHhhCcEEEEECCCCCCCHHHHHHH
Confidence 46666677777777877 4999999999876542110 1134566777777765554 6778777777
Q ss_pred HHHH
Q 028847 92 FLDA 95 (203)
Q Consensus 92 fld~ 95 (203)
++-.
T Consensus 275 ~l~e 278 (327)
T CHL00144 275 QINE 278 (327)
T ss_pred HHHH
Confidence 7754
No 198
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=57.79 E-value=77 Score=23.82 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=34.5
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....++|++||..-+-.-.--..++.|++.+.. ...+-++.++++-
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGNK 119 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNR 119 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 346799999999998876666777889988842 2356777777764
No 199
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=57.47 E-value=60 Score=22.93 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=31.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...+..|++.+... ...+.++.++++-
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK 114 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNK 114 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEc
Confidence 34577899999998876543334456677765321 2257888888874
No 200
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=57.41 E-value=69 Score=22.99 Aligned_cols=48 Identities=8% Similarity=-0.000 Sum_probs=29.0
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+.++|++|+....-...--..++.|+..+... ...+.++.++++-
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK 117 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNK 117 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 34578999999998764322222445566555311 2346777777763
No 201
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=57.07 E-value=35 Score=27.14 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=33.3
Q ss_pred eEEEecccCC--CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCc
Q 028847 73 GILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 139 (203)
Q Consensus 73 ~iiigsP~y~--~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~ 139 (203)
+||+|+..|. +.+++.++.=++.-..+|. .||...++.|+|....+. .....|.+.|..+|.
T Consensus 48 ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk----~gk~~~ilvSGg~~~~~~-~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 48 GVVLGTAKYYRTGVINQYYRYRIQGAINAYN----SGKVNYLLLSGDNALQSY-NEPMTMRKDLIAAGV 111 (239)
T ss_pred EEEcCCcccCCCCCcCHHHHHHHHHHHHHHH----hCCCCEEEEeCCCCCCCC-CHHHHHHHHHHHcCC
Confidence 6778888773 5566666555554333322 355555677776532221 123445666665543
No 202
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=56.59 E-value=48 Score=25.52 Aligned_cols=45 Identities=4% Similarity=-0.031 Sum_probs=29.1
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+..+|++||..-+-...--..++.|++.+.. ...+.++.++++-
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~-----~~~~~piilvgNK 126 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-----VCENIPIVLCGNK 126 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEc
Confidence 46789999998665544444556677777642 2356777777663
No 203
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=56.25 E-value=66 Score=23.38 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=47.6
Q ss_pred EEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 5 VYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 5 ilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
-+++|.|++ |-+..-++.+. . .|.+|+.....+.. .+-..+ -...++..|...||.--.--|
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk----~-~Gf~Vk~~~~~d~~--alK~~~----------gIp~e~~SCHT~VI~Gy~vEG 89 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK----A-NGFEVKVVETDDFL--ALKRRL----------GIPYEMQSCHTAVINGYYVEG 89 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH----h-CCcEEEEeecCcHH--HHHHhc----------CCChhhccccEEEEcCEEEec
Confidence 356788885 88888888775 2 48899888776632 111000 125689999999999998899
Q ss_pred CcHHH
Q 028847 84 MMAAQ 88 (203)
Q Consensus 84 ~~~~~ 88 (203)
++|..
T Consensus 90 HVPa~ 94 (149)
T COG3019 90 HVPAE 94 (149)
T ss_pred cCCHH
Confidence 99975
No 204
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=56.07 E-value=56 Score=30.42 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=23.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
++|+||-+- .+++..+++.+.+ .|+++++++..
T Consensus 517 ~~IlVID~g-ds~~~~l~~~L~~-----~G~~v~vv~~~ 549 (717)
T TIGR01815 517 RRILLVDHE-DSFVHTLANYLRQ-----TGASVTTLRHS 549 (717)
T ss_pred CEEEEEECC-ChhHHHHHHHHHH-----CCCeEEEEECC
Confidence 578888754 5778888777765 27788887654
No 205
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=55.14 E-value=76 Score=23.02 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=42.7
Q ss_pred eEEEEEecCc-chHHHHHHHHHHHhhccCCc---eEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMY-GHVEKLAEEIQKGAASVEGV---EAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~-G~T~~la~~i~~~l~~~~g~---~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+||....+ -.|..|.+...+.+.+ .|+ +++++.++-.. .+..+.. .-+-.++|+||.-.
T Consensus 5 ri~IV~s~~n~~i~~~ll~~a~~~l~~-~g~~~~~i~~~~VPGa~ElP~a~~~-------------l~~~~~~Davi~lG 70 (144)
T PF00885_consen 5 RIAIVVSRFNEEITDRLLEGALEELKR-HGVAEENIEVIRVPGAFELPLAAKR-------------LAESGRYDAVIALG 70 (144)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHH-TTTTGGCEEEEEESSGGGHHHHHHH-------------HHHCSTESEEEEEE
T ss_pred EEEEEEEeccHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCCHHHHHHHHHH-------------HhcccCccEEEEec
Confidence 7899887765 4589999988888888 477 78888887642 2222211 11224588887766
Q ss_pred ccCCCC
Q 028847 79 PTRFGM 84 (203)
Q Consensus 79 P~y~~~ 84 (203)
-++-|.
T Consensus 71 ~VI~G~ 76 (144)
T PF00885_consen 71 CVIRGE 76 (144)
T ss_dssp EEE--S
T ss_pred cccCCC
Confidence 555544
No 206
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=55.05 E-value=1.4e+02 Score=25.92 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=39.6
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCc--hhHHHHHHHHHHHcCcEEecCC
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
.-|..||..| +..+...++.+. . .|-+.+++.+.|....+. ...-..+.+.....|+.++|..
T Consensus 64 ~~Dlavi~vp------~~~~~~~l~e~~------~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPn 128 (447)
T TIGR02717 64 PVDLAVIVVP------AKYVPQVVEECG------E-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPN 128 (447)
T ss_pred CCCEEEEecC------HHHHHHHHHHHH------h-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecC
Confidence 4699999999 455566666653 2 466667666766432221 1112456667777899999865
No 207
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=54.88 E-value=67 Score=22.63 Aligned_cols=98 Identities=13% Similarity=-0.001 Sum_probs=48.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChh--hhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPN--ELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~aD~iiigsP~ 80 (203)
+||.|+-... ....-+..+.+.++. .|.+++++........ ......-. +....+ ...++|+||+....
T Consensus 2 ~~v~ill~~g--~~~~e~~~~~~~~~~-a~~~v~vvs~~~~~v~---s~~g~~i~---~~~~l~~~~~~~~D~liVpGg~ 72 (142)
T cd03132 2 RKVGILVADG--VDAAELSALKAALKA-AGANVKVVAPTLGGVV---DSDGKTLE---VDQTYAGAPSVLFDAVVVPGGA 72 (142)
T ss_pred CEEEEEEcCC--cCHHHHHHHHHHHHH-CCCEEEEEecCcCcee---cCCCcEEe---cceeecCCChhhcCEEEECCCc
Confidence 4777776543 333334455677766 3788888876542111 00000000 000111 23368998887532
Q ss_pred CCC---CcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 81 RFG---MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 81 y~~---~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
... ...+.+..|+.+.. -.+|+++.++++
T Consensus 73 ~~~~~~~~~~~l~~~l~~~~-------~~~~~I~aic~G 104 (142)
T cd03132 73 EAAFALAPSGRALHFVTEAF-------KHGKPIGAVGEG 104 (142)
T ss_pred cCHHHHccChHHHHHHHHHH-------hcCCeEEEcCch
Confidence 211 22345667776653 357887765444
No 208
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=54.58 E-value=29 Score=31.70 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=27.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCce-EEEEEc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVE-AKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~-v~~~~l 40 (203)
+|++++++|..|.+..+...+.+.+++. +.+ +++.+.
T Consensus 379 kkilvVC~sG~GsS~m~~~~l~~~l~~~-~i~~i~i~~~ 416 (639)
T PRK15083 379 RKIIVACDAGMGSSAMGAGVLRKKVQDA-GLSQISVTNS 416 (639)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHc-CCCeeEEEEe
Confidence 4799999999999888888888888763 443 555543
No 209
>PRK06217 hypothetical protein; Validated
Probab=54.25 E-value=19 Score=26.87 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=18.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHh
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGA 27 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l 27 (203)
|+||+|+-.|.+|.|- +++.+++.+
T Consensus 1 ~~~I~i~G~~GsGKST-la~~L~~~l 25 (183)
T PRK06217 1 MMRIHITGASGSGTTT-LGAALAERL 25 (183)
T ss_pred CeEEEEECCCCCCHHH-HHHHHHHHc
Confidence 3488887777788776 688888877
No 210
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=54.15 E-value=61 Score=26.94 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=31.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
++|-++|.|..-|+..+++.+.+.+++. |.++.-.-+...
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~~-Gl~vve~~v~~~ 199 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARKA-GLEVVEAAVTSV 199 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHHC-CCEEEEEecCcc
Confidence 4677788777789999999999999984 887766666543
No 211
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=54.07 E-value=1e+02 Score=24.54 Aligned_cols=68 Identities=19% Similarity=0.099 Sum_probs=37.8
Q ss_pred hh-hccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC-CC----chhHHHHHHHHHHHcCcE
Q 028847 67 EL-AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG-GG----QETTPLTAITQLVHHGMI 140 (203)
Q Consensus 67 ~l-~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~-~~----~~~~~~~~~~~l~~~g~~ 140 (203)
.+ .++|.+||+.|.--.+- .-..-||.. ..+|.++.++....... .+ .......+...|.++|+.
T Consensus 193 ~IP~~~d~Lvi~~P~~~ls~--~e~~~l~~y-------l~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~ 263 (271)
T PF09822_consen 193 EIPDDADVLVIAGPKTDLSE--EELYALDQY-------LMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIR 263 (271)
T ss_pred ccCCCCCEEEEECCCCCCCH--HHHHHHHHH-------HHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCE
Confidence 44 78999999999864433 333444443 23566777666543211 00 000012355788888887
Q ss_pred Eec
Q 028847 141 FVP 143 (203)
Q Consensus 141 ~v~ 143 (203)
+-.
T Consensus 264 ~~~ 266 (271)
T PF09822_consen 264 INP 266 (271)
T ss_pred eCC
Confidence 753
No 212
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=54.05 E-value=1e+02 Score=26.06 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~~~~lk~ 91 (203)
+|+.-..|...++.|++ .|++++++|+....|=+.- .....+.+++.||+.-=-+ .|++-..+-.
T Consensus 236 ~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPlD~~-------------~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~ 301 (356)
T PLN02683 236 FSKMVGYALKAAEILAK-EGISAEVINLRSIRPLDRD-------------TINASVRKTNRLVTVEEGWPQHGVGAEICA 301 (356)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCccCHH-------------HHHHHHhhcCeEEEEeCCCcCCCHHHHHHH
Confidence 46667777777787877 4999999999876541110 0134566777777765444 5778777777
Q ss_pred HHHH
Q 028847 92 FLDA 95 (203)
Q Consensus 92 fld~ 95 (203)
++-.
T Consensus 302 ~l~e 305 (356)
T PLN02683 302 SVVE 305 (356)
T ss_pred HHHH
Confidence 7754
No 213
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=53.47 E-value=66 Score=22.47 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHH
Q 028847 16 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 16 T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~ 95 (203)
+..+++.+.+.+.+..+-++..+|+.+. -.-+|.+||+|-.=.-++.+...+..+.
T Consensus 3 ~~~l~~~i~~alddkKAeDIv~lDv~~~------------------------s~~tDyfVIatg~s~rhv~Aiad~i~~~ 58 (115)
T COG0799 3 MEELLEVIVEALDDKKAEDIVVLDVSGK------------------------SSLTDYFVIATGNSSRHVKAIADNVKEE 58 (115)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEccCC------------------------cccccEEEEEEeCchHHHHHHHHHHHHH
Confidence 5677888888887654568889998763 2357999999987766666666666555
Q ss_pred h
Q 028847 96 T 96 (203)
Q Consensus 96 ~ 96 (203)
+
T Consensus 59 ~ 59 (115)
T COG0799 59 L 59 (115)
T ss_pred H
Confidence 5
No 214
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=53.31 E-value=53 Score=25.17 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=45.9
Q ss_pred ceEEEEE-ecC----cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 3 TKVYIVY-YSM----YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 3 ~kilIiy-~S~----~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
+|++|+- |.. .|---.+++.+.+.... ..+++++|.....++ + .+.+..+|.+||.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~--~~~V~vid~Gt~g~~-l----------------l~~i~~~d~vIiV 64 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHW--PEYVEIVDGGTQGLN-L----------------LGYVESASHLLIL 64 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCC--CCCeEEEECCCCHHH-H----------------HHHHcCCCEEEEE
Confidence 4788774 553 46677788888765421 225888988764332 1 3567789999998
Q ss_pred cccCCCCcHHHHH
Q 028847 78 FPTRFGMMAAQFK 90 (203)
Q Consensus 78 sP~y~~~~~~~lk 90 (203)
=.+..+.-|+.+.
T Consensus 65 DAv~~g~~PGtv~ 77 (195)
T PRK10264 65 DAIDYGLEPGTLR 77 (195)
T ss_pred ECCccCCCCCeEE
Confidence 8777777777554
No 215
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=53.21 E-value=65 Score=23.36 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=42.6
Q ss_pred eEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhc
Q 028847 4 KVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE 70 (203)
Q Consensus 4 kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (203)
||+||+|-. +|+ -..+-+.+.+...+ .|++++++.-+.. ..+++. ..+...+
T Consensus 2 ~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E--Gelid~------------I~~a~~~ 66 (140)
T PF01220_consen 2 KILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAE-LGVEVEFFQSNHE--GELIDW------------IHEARDD 66 (140)
T ss_dssp EEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHH-TTEEEEEEE-SSH--HHHHHH------------HHHHTCT
T ss_pred EEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHH-CCCeEEEEecCCH--HHHHHH------------HHHHHhh
Confidence 899999984 244 33455566666666 4888888765532 112211 1334556
Q ss_pred cCeEEEecccC-CCCcHHHHHHHHHHh
Q 028847 71 ADGILLGFPTR-FGMMAAQFKAFLDAT 96 (203)
Q Consensus 71 aD~iiigsP~y-~~~~~~~lk~fld~~ 96 (203)
+|++||=---| ..++ .++..+..+
T Consensus 67 ~dgiIINpga~thtS~--Ai~DAl~~~ 91 (140)
T PF01220_consen 67 VDGIIINPGAYTHTSI--AIRDALKAI 91 (140)
T ss_dssp TSEEEEE-GGGGHT-H--HHHHHHHCC
T ss_pred CCEEEEccchhccccH--HHHHHHHcC
Confidence 89999987776 3433 345444443
No 216
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=53.02 E-value=41 Score=25.64 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=29.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||.+- .||...+.+.+.+ .|+++.+++ + .+++..+|+|||-.|
T Consensus 2 i~iid~g-~~n~~~v~~~l~~-----~g~~~~~~~--~----------------------~~~l~~~d~lilPG~ 46 (201)
T PRK13152 2 IALIDYK-AGNLNSVAKAFEK-----IGAINFIAK--N----------------------PKDLQKADKLLLPGV 46 (201)
T ss_pred EEEEECC-CCcHHHHHHHHHH-----CCCeEEEEC--C----------------------HHHHcCCCEEEECCC
Confidence 6666543 5788888887765 255666543 2 235778999999443
No 217
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=52.67 E-value=82 Score=22.39 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=29.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..+..|+..+... ...++++.++++-
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pi~vv~nK 117 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDH----ADSNIVIMLVGNK 117 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 34567899888886665433334556676665321 2246788877764
No 218
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=52.28 E-value=47 Score=24.72 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=14.9
Q ss_pred hhhhhccCeEEEecccCC
Q 028847 65 PNELAEADGILLGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+.+||.||-+++.=.
T Consensus 82 ~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 82 KEHTKQADIVIVAVGKPG 99 (168)
T ss_pred HHHHhhCCEEEEcCCCCc
Confidence 457899999999998843
No 219
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=51.54 E-value=54 Score=27.05 Aligned_cols=43 Identities=28% Similarity=0.276 Sum_probs=34.7
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCCCch
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPETLSE 46 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~ 46 (203)
+++-||.+|..| +...+++.+++.++++ |-++-++-+.+..+.
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~-gkk~y~i~~~~in~~ 256 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEEL-GKEALLILLDNISPD 256 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCHH
Confidence 468899999866 4788999999999884 888888888876554
No 220
>PRK08939 primosomal protein DnaI; Reviewed
Probab=51.40 E-value=14 Score=30.36 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=38.0
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
+-+++||+. +|-|.. +.+++..+.+ .|..+.++.+++.- ..+..... ..... ...+.+.++|.+||=
T Consensus 157 ~gl~L~G~~G~GKThL-a~Aia~~l~~-~g~~v~~~~~~~l~-~~lk~~~~---~~~~~-~~l~~l~~~dlLiID 224 (306)
T PRK08939 157 KGLYLYGDFGVGKSYL-LAAIANELAK-KGVSSTLLHFPEFI-RELKNSIS---DGSVK-EKIDAVKEAPVLMLD 224 (306)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH-cCCCEEEEEHHHHH-HHHHHHHh---cCcHH-HHHHHhcCCCEEEEe
Confidence 457788876 788885 5566666655 38888888776421 11111100 00111 124567888988853
No 221
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.21 E-value=1.4e+02 Score=24.50 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=29.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++++++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 72 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDN-GFHSLKDRYPAD 72 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 566666665666777788888888874 999999999764
No 222
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=51.14 E-value=55 Score=20.85 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=25.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|.|++.+.-+.+.++.+.+.+...+..+++.+.+|+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 666655555578887766665544321377888888875
No 223
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=50.82 E-value=92 Score=22.45 Aligned_cols=97 Identities=19% Similarity=0.066 Sum_probs=47.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC-CCCchhHhhhcCC-CCCCCCCCCChhh--hhccCeEEEec-
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP-ETLSEDVLGKMGA-GPKSDVPTITPNE--LAEADGILLGF- 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~-~~~~~~~~~~~~~-~~~~~~~~~~~~~--l~~aD~iiigs- 78 (203)
||+|+.. .|....=+..+.+.++. .|.+++++... .... ...... .-. +....++ ..++|.|++..
T Consensus 1 ~v~il~~--~gf~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v---~~~~g~~~i~---~d~~~~~~~~~~~D~lvvpGG 71 (165)
T cd03134 1 KVAILAA--DGFEDVELTYPLYRLRE-AGAEVVVAGPEAGGEI---QGKHGYDTVT---VDLTIADVDADDYDALVIPGG 71 (165)
T ss_pred CEEEEcC--CCchHHHHHHHHHHHHH-CCCEEEEEccCCCccc---ccCcCceeec---CCCChHHCCHHHCCEEEECCC
Confidence 3555542 23333334444556666 37888888765 3211 110010 000 1111222 34789887765
Q ss_pred ccCC-CCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 79 PTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 79 P~y~-~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
|.+. ..-.+.+..||.+.. -.+|+++.++++
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~-------~~~~~i~~ic~G 103 (165)
T cd03134 72 TNPDKLRRDPDAVAFVRAFA-------EAGKPVAAICHG 103 (165)
T ss_pred CChhhhccCHHHHHHHHHHH-------HcCCeEEEEchH
Confidence 3221 123356777777663 367887777664
No 224
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=50.73 E-value=54 Score=21.75 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=25.0
Q ss_pred EEEE-ecCcch--HHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 6 YIVY-YSMYGH--VEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 6 lIiy-~S~~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++|| .|.+|+ ++.=-+.+...|... +++.+-+|+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k-~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAK-KIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHC-CCceEEEecCC
Confidence 3455 555776 555556777777774 89999999975
No 225
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=50.71 E-value=1.3e+02 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=19.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
.+.+.++|.|||++|+ ..+..++..+.
T Consensus 40 ~~~~~~~DlvvlavP~------~~~~~~l~~~~ 66 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV------SAIEDVLEEIA 66 (258)
T ss_dssp HHHGGCCSEEEE-S-H------HHHHHHHHHHH
T ss_pred HhHhcCCCEEEEcCCH------HHHHHHHHHhh
Confidence 4578999999999997 45777777775
No 226
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=50.66 E-value=39 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=22.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|+|+.+|.......-...+++.+.+ .|+.+.++-+.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk-~~I~v~vI~~G~ 146 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKK-NNVSVDIINFGE 146 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHH-cCCeEEEEEeCC
Confidence 67888888743333223344455555 377777766654
No 227
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=50.50 E-value=64 Score=27.17 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=34.2
Q ss_pred ceEEEEEecCcch-HHHHHHHHHHHhhccCCceEEEEEcCCCCch
Q 028847 3 TKVYIVYYSMYGH-VEKLAEEIQKGAASVEGVEAKLWQVPETLSE 46 (203)
Q Consensus 3 ~kilIiy~S~~G~-T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~ 46 (203)
+++-||.+|..|. ...+++.+.+.+.+. |.++-++-+.+..++
T Consensus 238 ~~~giiv~tk~gQ~r~~~~~~l~k~~~~~-g~~~~li~~~~i~p~ 281 (347)
T COG1736 238 KSFGIIVSTKGGQRRLEVARELVKLLKEA-GKEVYLIVVDEISPD 281 (347)
T ss_pred CeEEEEEecccccCcHHHHHHHHHHHHHc-CCceEEEEecCCCHH
Confidence 4688999998774 888999999999884 888888877765443
No 228
>PRK08116 hypothetical protein; Validated
Probab=50.36 E-value=90 Score=25.07 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.1
Q ss_pred EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 5 VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
-++++|++ +|-|. ||.+|+..+.+. |..+-+++..+
T Consensus 116 gl~l~G~~GtGKTh-La~aia~~l~~~-~~~v~~~~~~~ 152 (268)
T PRK08116 116 GLLLWGSVGTGKTY-LAACIANELIEK-GVPVIFVNFPQ 152 (268)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHHc-CCeEEEEEHHH
Confidence 47788876 78888 566777777653 66777776554
No 229
>PRK10026 arsenate reductase; Provisional
Probab=50.23 E-value=48 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=24.0
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
++|. ||+.+ -+.+++..+++.+ .|++++++|+....+
T Consensus 2 ~~i~-iY~~p~Cst~RKA~~wL~~-----~gi~~~~~d~~~~pp 39 (141)
T PRK10026 2 SNIT-IYHNPACGTSRNTLEMIRN-----SGTEPTIIHYLETPP 39 (141)
T ss_pred CEEE-EEeCCCCHHHHHHHHHHHH-----CCCCcEEEeeeCCCc
Confidence 3455 45555 5666665555544 488999999977554
No 230
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=50.16 E-value=70 Score=23.93 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=49.9
Q ss_pred ceEEEEEecC---cc-------hHHHHHHHHHHHhhcc----CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh
Q 028847 3 TKVYIVYYSM---YG-------HVEKLAEEIQKGAASV----EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL 68 (203)
Q Consensus 3 ~kilIiy~S~---~G-------~T~~la~~i~~~l~~~----~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (203)
.||-|+-.|- .| .|..+++.+++.+++. .|-+|+.+-.... +....++. ...+++
T Consensus 4 pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~-Iggv~eAa----------~~ae~f 72 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTT-IGGVAEAA----------ACAEKF 72 (171)
T ss_dssp -EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS--B-SHHHHH----------HHHHHH
T ss_pred CeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCc-ccCHHHHH----------HHHHHH
Confidence 4677777663 34 7888999888888762 3567777655442 11000000 012334
Q ss_pred --hccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 69 --AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 69 --~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
...+..|..+|+|.+.--. +|.- ....|++-.|.....+ |... +......+.+.|..-.
T Consensus 73 ~~~~V~~titvtpcWcy~~et-----md~~-------~~~p~aiwgfngterP--GaVy-LaAa~aa~~Q~Gip~f 133 (171)
T PF07881_consen 73 KREGVGVTITVTPCWCYGSET-----MDMD-------PNTPKAIWGFNGTERP--GAVY-LAAALAAHNQKGIPAF 133 (171)
T ss_dssp HCCTEEEEEEEESS---HHHH-----S----------TTS-EEEEE---SSS---HHHH-HHHHHHHHHHCT---E
T ss_pred HHcCCCEEEEEEeeeecchhh-----hccC-------cCCCccEEeecCCCCC--cHHH-HHHHHHHHhcCCCcce
Confidence 4678899999999653211 2221 3445666656544332 2222 3334445556666543
No 231
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=50.14 E-value=42 Score=27.77 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=30.7
Q ss_pred CceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 2 ATKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
++||.|++|..+. -+-.=++.+.+.|.+ .|.++..+++...
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~~ 46 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITKD 46 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECCC
Confidence 3589999988642 355667788888877 4889999998763
No 232
>PRK13337 putative lipid kinase; Reviewed
Probab=50.10 E-value=1.1e+02 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=27.1
Q ss_pred CceEEEEEecCcch--HHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGH--VEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|+++|+-...|+ ..+....+.+.+.+ .|.+++++....
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~ 42 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTG 42 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecC
Confidence 36888888665554 34566677777877 477877766553
No 233
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=49.97 E-value=28 Score=24.14 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=42.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCch--hHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSE--DVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+++||. +|++-..|...++.|++ .|++++++++....|- ..+ .+.+.+++.+++.-=-+
T Consensus 11 di~iia---~G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i~P~d~~~l---------------~~~~~~~~~vvvvee~~ 71 (124)
T PF02780_consen 11 DITIIA---YGSMVEEALEAAEELEE-EGIKAGVIDLRTIKPFDEEAL---------------LESLKKTGRVVVVEEHY 71 (124)
T ss_dssp SEEEEE---ETTHHHHHHHHHHHHHH-TTCEEEEEEEEEEESSBHHHH---------------HHHSHHHHHHHHSETCE
T ss_pred CEEEEe---ehHHHHHHHHHHHHHHH-cCCceeEEeeEEEecccccch---------------HHHHHHhcccccccccc
Confidence 455554 45556667777788877 4999999998765431 111 11244454444433222
Q ss_pred -CCCcHHHHHHHHHH
Q 028847 82 -FGMMAAQFKAFLDA 95 (203)
Q Consensus 82 -~~~~~~~lk~fld~ 95 (203)
.+++-..+..++..
T Consensus 72 ~~gg~g~~i~~~l~~ 86 (124)
T PF02780_consen 72 KIGGLGSAIAEYLAE 86 (124)
T ss_dssp SEEEEHSSHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 56666666666655
No 234
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=49.79 E-value=1.2e+02 Score=23.65 Aligned_cols=106 Identities=23% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEEecCcchHHHHHHHHHHHhhccCCce--EEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCC
Q 028847 7 IVYYSMYGHVEKLAEEIQKGAASVEGVE--AKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM 84 (203)
Q Consensus 7 Iiy~S~~G~T~~la~~i~~~l~~~~g~~--v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
|||.-.+| +++.+.|.+.. +.+ +.++++++..++++ +.|+...+++.++|.+|.-+ -
T Consensus 2 vi~~G~yG--eR~~~~i~~~~----~~~~~v~~~~~p~~l~efI----------d~pee~Lp~i~~~Dl~I~y~-----l 60 (217)
T PF02593_consen 2 VIYDGKYG--ERVIENIKNYF----DFCRSVIVYEIPEDLPEFI----------DDPEEYLPKIPEADLLIAYG-----L 60 (217)
T ss_pred eeeeCcch--HHHHHHHHhcC----CCCceEEEEeCCccccccc----------cChHHHccCCCCCCEEEEec-----c
Confidence 45544455 66666666554 345 77788776322211 11222234588999888521 1
Q ss_pred cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 85 MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 85 ~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
-|..+-...+.+. . .|-++.++.+..+. .+. ...+.+.+...|..++..
T Consensus 61 HPDl~~~l~~~~~------e-~g~kavIvp~~~~~-~g~---~~~lk~~~e~~gi~~~~P 109 (217)
T PF02593_consen 61 HPDLTYELPEIAK------E-AGVKAVIVPSESPK-PGL---RRQLKKQLEEFGIEVEFP 109 (217)
T ss_pred CchhHHHHHHHHH------H-cCCCEEEEecCCCc-cch---HHHHHHHHHhcCceeecC
Confidence 2333334444442 2 46666655444332 122 456778888888777543
No 235
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.78 E-value=80 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=14.6
Q ss_pred CCceEEEEE-ecC--cchHHHHHHHHH
Q 028847 1 MATKVYIVY-YSM--YGHVEKLAEEIQ 24 (203)
Q Consensus 1 mm~kilIiy-~S~--~G~T~~la~~i~ 24 (203)
||+|+.|+. |-+ ...|+.|+..+.
T Consensus 2 ~~~~~~i~t~GC~~N~~ds~~~~~~l~ 28 (444)
T PRK14325 2 MMKKLYIKTYGCQMNEYDSSKMADLLG 28 (444)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHH
Confidence 777887774 333 244666666654
No 236
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=49.75 E-value=76 Score=26.71 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=26.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|+.|||.|.+|. ..++.+.+.+++ .|.++..+.+..
T Consensus 125 k~vaiiYd~~~~~--~~lq~l~~~~~~-~g~~v~~~~~~~ 161 (371)
T cd06388 125 NRFVFLYDTDRGY--SILQAIMEKAGQ-NGWQVSAICVEN 161 (371)
T ss_pred eEEEEEecCCccH--HHHHHHHHhhHh-cCCeeeeEEecc
Confidence 5799999877776 447888888877 477776655543
No 237
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.23 E-value=1.4e+02 Score=24.24 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=38.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.|| |+. .+...++..+.+ .|.+|.+++-.... ...+.+.++|.||+..|.
T Consensus 6 ~I~ii-G~G-----~~G~~lA~~l~~-~G~~V~~~~r~~~~------------------~~~~~~~~advvi~~vp~--- 57 (308)
T PRK14619 6 TIAIL-GAG-----AWGSTLAGLASA-NGHRVRVWSRRSGL------------------SLAAVLADADVIVSAVSM--- 57 (308)
T ss_pred EEEEE-Ccc-----HHHHHHHHHHHH-CCCEEEEEeCCCCC------------------CHHHHHhcCCEEEEECCh---
Confidence 67766 442 245555555555 37788887764321 012356789999999994
Q ss_pred CcHHHHHHHHHHh
Q 028847 84 MMAAQFKAFLDAT 96 (203)
Q Consensus 84 ~~~~~lk~fld~~ 96 (203)
..++.+++.+
T Consensus 58 ---~~~~~v~~~l 67 (308)
T PRK14619 58 ---KGVRPVAEQV 67 (308)
T ss_pred ---HHHHHHHHHH
Confidence 3456666665
No 238
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=49.11 E-value=42 Score=23.81 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=41.7
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
..+.++|++||.+.+-.-.--..++.|++.+... .-.+.++.++++--....................+...+.
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~----~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e 140 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY----KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFE 140 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH----STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccccccccccccccccc----ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEE
Confidence 3578999999998876655445566777776422 1135788877764321111111123344455556655543
No 239
>PLN02335 anthranilate synthase
Probab=49.10 E-value=82 Score=24.52 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=22.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+||- -..+.|..+++.+.+ .|++++++...
T Consensus 20 ~ilviD-~~dsft~~i~~~L~~-----~g~~~~v~~~~ 51 (222)
T PLN02335 20 PIIVID-NYDSFTYNLCQYMGE-----LGCHFEVYRND 51 (222)
T ss_pred cEEEEE-CCCCHHHHHHHHHHH-----CCCcEEEEECC
Confidence 677763 335678888888866 26788888654
No 240
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=49.00 E-value=1.5e+02 Score=24.46 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.3
Q ss_pred hhhhccCeEEEecccC
Q 028847 66 NELAEADGILLGFPTR 81 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y 81 (203)
+.+.++|.|+++.|-+
T Consensus 55 ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 55 EAIPQADLIMNLLPDE 70 (314)
T ss_pred HHHhcCCEEEEeCCcH
Confidence 4578999999999954
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.95 E-value=1.5e+02 Score=24.33 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=18.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
+.+..+|.||+..|.+. ++..++.+
T Consensus 70 e~~~~aD~Vi~~v~~~~------~~~v~~~l 94 (328)
T PRK14618 70 EALAGADFAVVAVPSKA------LRETLAGL 94 (328)
T ss_pred HHHcCCCEEEEECchHH------HHHHHHhc
Confidence 34678999999999982 45555554
No 242
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=48.63 E-value=33 Score=29.57 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+||||+.++. ++..+.+.+++. |+++-.++..
T Consensus 1 ~~k~iLi~g~g~------~a~~i~~aa~~~-G~~vv~~~~~ 34 (451)
T PRK08591 1 MFDKILIANRGE------IALRIIRACKEL-GIKTVAVHST 34 (451)
T ss_pred CcceEEEECCCH------HHHHHHHHHHHc-CCeEEEEcCh
Confidence 789999996553 345555566663 8777666443
No 243
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.59 E-value=1.5e+02 Score=24.34 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=28.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..||.-.....+..-++...+.+++. |++++++++++.
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEML-GLRSETILLPST 72 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 456666565556677777777878774 999999999754
No 244
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=48.25 E-value=32 Score=28.47 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=28.4
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||++++-+. .|-.++.+..+++.|.+ .|.+|+++-.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~-~G~~V~v~~~ 38 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQS-RGHEVTIYTS 38 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHh-CCCeEEEEcC
Confidence 899998764 46677788888898887 4899988854
No 245
>PRK05670 anthranilate synthase component II; Provisional
Probab=48.19 E-value=1.2e+02 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=21.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||||-.- ...|..+++.+.+ .|++++++....
T Consensus 2 iliid~~-d~f~~~i~~~l~~-----~g~~~~v~~~~~ 33 (189)
T PRK05670 2 ILLIDNY-DSFTYNLVQYLGE-----LGAEVVVYRNDE 33 (189)
T ss_pred EEEEECC-CchHHHHHHHHHH-----CCCcEEEEECCC
Confidence 7777533 5567888777765 277888887653
No 246
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=48.03 E-value=56 Score=24.76 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=29.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||-+ .+||...+++.+.. .|+++++++ + .+++.++|+||+..|
T Consensus 2 i~vid~-g~gn~~~~~~~l~~-----~g~~v~~~~--~----------------------~~~l~~~d~lilpG~ 46 (199)
T PRK13181 2 IAIIDY-GAGNLRSVANALKR-----LGVEAVVSS--D----------------------PEEIAGADKVILPGV 46 (199)
T ss_pred EEEEeC-CCChHHHHHHHHHH-----CCCcEEEEc--C----------------------hHHhccCCEEEECCC
Confidence 677642 24677777776643 277777652 1 236778999998654
No 247
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=47.84 E-value=1.5e+02 Score=23.91 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=54.9
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHH---HH
Q 028847 19 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL---DA 95 (203)
Q Consensus 19 la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fl---d~ 95 (203)
|...++..+.+ .|.++.++|......+.... .+....+ ...+.+.++|.||+..|.. ..++..+ +.
T Consensus 7 mG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~-~g~~~~~----s~~~~~~~advVil~vp~~-----~~~~~v~~g~~~ 75 (288)
T TIGR01692 7 MGGPMAANLLK-AGHPVRVFDLFPDAVEEAVA-AGAQAAA----SPAEAAEGADRVITMLPAG-----QHVISVYSGDEG 75 (288)
T ss_pred hHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHH-cCCeecC----CHHHHHhcCCEEEEeCCCh-----HHHHHHHcCcch
Confidence 44455555555 37788887765422222111 1111000 1134578899999999973 3455555 33
Q ss_pred hcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 96 TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 96 ~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
+.. ...+|+ ..+-++ ... ..+.+.+.+.+...|..+++.++.
T Consensus 76 l~~----~~~~g~-~vid~s-t~~----p~~~~~~~~~~~~~g~~~vdaPv~ 117 (288)
T TIGR01692 76 ILP----KVAKGS-LLIDCS-TID----PDSARKLAELAAAHGAVFMDAPVS 117 (288)
T ss_pred Hhh----cCCCCC-EEEECC-CCC----HHHHHHHHHHHHHcCCcEEECCCC
Confidence 321 112333 222222 211 122456677888889988887654
No 248
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.81 E-value=47 Score=27.39 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=28.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|+||.|++-........+++.+.+.+.+ .|+++.+.+
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLD 41 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEee
Confidence 5679999877666777889999988877 487776654
No 249
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=47.78 E-value=9.2 Score=29.05 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=40.5
Q ss_pred ceEEEEEecC-----------cchHHHHHHHHHHHhhccCCceEEEEEcCCC-CchhHhhhcCCCCCCCCCCCChhhhhc
Q 028847 3 TKVYIVYYSM-----------YGHVEKLAEEIQKGAASVEGVEAKLWQVPET-LSEDVLGKMGAGPKSDVPTITPNELAE 70 (203)
Q Consensus 3 ~kilIiy~S~-----------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (203)
+||||-.|.. +..|-++...|++.+... |++|.++.-+.. .+++.+......--+++.+...+.+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~ 82 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPS 82 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGG
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCccccccccceEEEecchhhhhhhhccccCc
Confidence 4677776653 134778888899888874 999999877632 111111100000000000112345678
Q ss_pred cCeEEEecccCCCCcH
Q 028847 71 ADGILLGFPTRFGMMA 86 (203)
Q Consensus 71 aD~iiigsP~y~~~~~ 86 (203)
+|.+|.+.-+=.+.+.
T Consensus 83 ~Di~I~aAAVsDf~p~ 98 (185)
T PF04127_consen 83 ADIIIMAAAVSDFRPE 98 (185)
T ss_dssp GSEEEE-SB--SEEES
T ss_pred ceeEEEecchhheeeh
Confidence 8999999877555554
No 250
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=47.74 E-value=1e+02 Score=21.98 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=29.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..+..|+..+... ...+.++.++++-
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~----~~~~~~~iiv~nK 116 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNK 116 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 4567899999997765433334455666665321 2246787777763
No 251
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=47.64 E-value=36 Score=24.37 Aligned_cols=47 Identities=4% Similarity=0.043 Sum_probs=30.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++++..-.-...-...++.|++.+... ...+.++.++++-
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK 117 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNK 117 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 4567899999987665544345567788877421 2245677777663
No 252
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=47.49 E-value=53 Score=24.29 Aligned_cols=43 Identities=12% Similarity=-0.029 Sum_probs=29.3
Q ss_pred CCCCCeEEEEEccCCC-CCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 104 QLAGKPAGIFYSTGSQ-GGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~-~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
.++||++.++-|+..= ...+...++.+.+.+...|+.|++.+.
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 4688888887775321 123444577778888888999988764
No 253
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=47.09 E-value=68 Score=20.07 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=28.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|- +|++.-++++.+...+.+.+.+. |.+++++++.+
T Consensus 2 ~i~-~~a~~C~~C~~~~~~~~~~~~e~-~~~~~~~~v~~ 38 (76)
T TIGR00412 2 KIQ-IYGTGCANCQMTEKNVKKAVEEL-GIDAEFEKVTD 38 (76)
T ss_pred EEE-EECCCCcCHHHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 443 47766789999988888888773 77788888874
No 254
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=46.75 E-value=17 Score=24.44 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=32.7
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
+.|+++.- ...+-+-...+++++. -.||++.+++..+... ..++.+.|..+|+.+-
T Consensus 4 D~dGvl~~----g~~~ipga~e~l~~L~-------~~g~~~~~lTNns~~s------~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 4 DLDGVLYN----GNEPIPGAVEALDALR-------ERGKPVVFLTNNSSRS------REEYAKKLKKLGIPVD 59 (101)
T ss_dssp ESTTTSEE----TTEE-TTHHHHHHHHH-------HTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--
T ss_pred eCccEeEe----CCCcCcCHHHHHHHHH-------HcCCCEEEEeCCCCCC------HHHHHHHHHhcCcCCC
Confidence 44555553 2223333588888884 3589999887665421 2446678888887653
No 255
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=46.53 E-value=1.3e+02 Score=22.89 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=42.3
Q ss_pred CceEEEEEecC-----cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 2 ATKVYIVYYSM-----YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 2 m~kilIiy~S~-----~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
|+||.|| ||+ +|--+.+++.+...+.+ .|++++++-..+.... ....-..++.+-+
T Consensus 1 mkkIaIi-GtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~-----------------~~~~y~gv~l~~i 61 (185)
T PF09314_consen 1 MKKIAII-GTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPY-----------------KEFEYNGVRLVYI 61 (185)
T ss_pred CceEEEE-eCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCC-----------------CCcccCCeEEEEe
Confidence 5788876 453 68899999999999987 4899988766543211 1234566778888
Q ss_pred eccc
Q 028847 77 GFPT 80 (203)
Q Consensus 77 gsP~ 80 (203)
.+|.
T Consensus 62 ~~~~ 65 (185)
T PF09314_consen 62 PAPK 65 (185)
T ss_pred CCCC
Confidence 7775
No 256
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=46.53 E-value=1.4e+02 Score=26.24 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~~~~lk~ 91 (203)
+|+.-..|...++.|++ .|++++++|+....|-+.- ...+.+.+...||+.-=-| .+++-..+-.
T Consensus 348 ~G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPlD~~-------------~i~~sv~kt~~vvtvEE~~~~gGlG~~va~ 413 (464)
T PRK11892 348 FSIGMTYALKAAEELAK-EGIDAEVIDLRTIRPMDTE-------------TIVESVKKTNRLVTVEEGWPQSGVGAEIAA 413 (464)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcCCHH-------------HHHHHHHhcCeEEEEeCCCcCCcHHHHHHH
Confidence 35556666667777776 4999999999876441110 1234567777777665444 5777777777
Q ss_pred HHHH
Q 028847 92 FLDA 95 (203)
Q Consensus 92 fld~ 95 (203)
++-.
T Consensus 414 ~l~e 417 (464)
T PRK11892 414 RVME 417 (464)
T ss_pred HHHH
Confidence 7754
No 257
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=46.27 E-value=82 Score=26.91 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=17.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||++|-.+ .+..+++.+.+ .|+++.++..
T Consensus 194 ~I~viD~g---~k~ni~~~L~~-----~G~~v~vvp~ 222 (382)
T CHL00197 194 KIIVIDFG---VKYNILRRLKS-----FGCSITVVPA 222 (382)
T ss_pred EEEEEECC---cHHHHHHHHHH-----CCCeEEEEcC
Confidence 68888764 44445555543 3778877754
No 258
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=46.26 E-value=32 Score=27.59 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.3
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
|.+.......++.|+++.. .++|+++++++++|.
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 4555566677999999875 577888888877763
No 259
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=46.09 E-value=35 Score=24.99 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=25.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
...+..+|.||...+.+... ...++++++.+.
T Consensus 55 ~~al~~~d~vi~~~~~~~~~-~~~~~~~~~a~~ 86 (183)
T PF13460_consen 55 KAALKGADAVIHAAGPPPKD-VDAAKNIIEAAK 86 (183)
T ss_dssp HHHHTTSSEEEECCHSTTTH-HHHHHHHHHHHH
T ss_pred hhhhhhcchhhhhhhhhccc-cccccccccccc
Confidence 45677899999999987776 666788888774
No 260
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=45.71 E-value=27 Score=23.13 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=41.2
Q ss_pred EEEEec-CcchHHHHHHHHHHHhhcc--CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 6 YIVYYS-MYGHVEKLAEEIQKGAASV--EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 6 lIiy~S-~~G~T~~la~~i~~~l~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|=+|.+ .+-++.+..+.+.+.+++. +.++.+++|+.+- ..+.+.|. |++||+--
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q----------------------P~lAE~~~-IvATPtLI 62 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN----------------------PQLAEEDK-ILATPTLS 62 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC----------------------HhHHhHCC-EEEecHHh
Confidence 334433 3556666666666665542 3468899998762 23444443 56888876
Q ss_pred CCcHHHHHHHHHHh
Q 028847 83 GMMAAQFKAFLDAT 96 (203)
Q Consensus 83 ~~~~~~lk~fld~~ 96 (203)
-..|.+.+.++-.+
T Consensus 63 K~~P~P~rriiGdl 76 (87)
T TIGR02654 63 KILPPPVRKIIGDL 76 (87)
T ss_pred hcCCCCcceeeccc
Confidence 66677777666544
No 261
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=45.37 E-value=1.5e+02 Score=24.99 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc-CCCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT-RFGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~-y~~~~~~~lk~ 91 (203)
+|++...+...++.|++ .|++++++++....|-+.- ...+.+.+++.||+.==- -.|++-..+-.
T Consensus 241 ~Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~Pld~e-------------~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~ 306 (355)
T PTZ00182 241 YGSQVHVALKAAEELAK-EGISCEVIDLRSLRPWDRE-------------TIVKSVKKTGRCVIVHEAPPTCGIGAEIAA 306 (355)
T ss_pred eCHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCHH-------------HHHHHHhcCCEEEEEEeCCCCCCHHHHHHH
Confidence 35555566666667766 4889999999876431110 012346667776665222 25677666666
Q ss_pred HHHH
Q 028847 92 FLDA 95 (203)
Q Consensus 92 fld~ 95 (203)
++-.
T Consensus 307 ~l~e 310 (355)
T PTZ00182 307 QIME 310 (355)
T ss_pred HHHH
Confidence 6643
No 262
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=45.33 E-value=1.7e+02 Score=23.81 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=56.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.+|- . | .|...++..+.+ .|.+|.++|......+.+.+ .......+ +....+.+..+|.||+..|.-
T Consensus 2 ~Ig~IG-l--G---~mG~~la~~L~~-~g~~V~~~dr~~~~~~~l~~-~g~~~~~s-~~~~~~~~~~~dvIi~~vp~~-- 70 (298)
T TIGR00872 2 QLGLIG-L--G---RMGANIVRRLAK-RGHDCVGYDHDQDAVKAMKE-DRTTGVAN-LRELSQRLSAPRVVWVMVPHG-- 70 (298)
T ss_pred EEEEEc-c--h---HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-cCCcccCC-HHHHHhhcCCCCEEEEEcCch--
Confidence 666653 2 2 244444555544 37788877765322111111 11110000 000112345689999999873
Q ss_pred CcHHHHHHHHHHhcccccccCC-CCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
.++..++.+.. .+ +|+ +. +.++...... ...+...+...|..+++.+++
T Consensus 71 ----~~~~v~~~l~~-----~l~~g~-iv-id~st~~~~~----t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 71 ----IVDAVLEELAP-----TLEKGD-IV-IDGGNSYYKD----SLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred ----HHHHHHHHHHh-----hCCCCC-EE-EECCCCCccc----HHHHHHHHHhcCCeEEecCCC
Confidence 45555555531 23 343 22 2222221111 234556777889988887654
No 263
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=45.32 E-value=36 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.1
Q ss_pred EEEEEecCc-chHHHHHHHHHHHhhcc--CCceEEEEEcCCC
Q 028847 5 VYIVYYSMY-GHVEKLAEEIQKGAASV--EGVEAKLWQVPET 43 (203)
Q Consensus 5 ilIiy~S~~-G~T~~la~~i~~~l~~~--~g~~v~~~~l~~~ 43 (203)
|||++.|-. |+ .+.|++|++.+.+. .+++|+++|+-+.
T Consensus 1 ilils~~~G~GH-~~aa~al~~~~~~~~~~~~~v~~~d~~~~ 41 (382)
T PLN02605 1 VLILMSDTGGGH-RASAEAIKDAFQLEFGDEYQVFIVDLWKE 41 (382)
T ss_pred CEEEEEcCCcCh-HHHHHHHHHHHHhhcCCCeeEEEEehhhh
Confidence 688998864 55 56788899888642 2467788888753
No 264
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.22 E-value=1.7e+02 Score=24.04 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=29.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++.+++++.
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARV-GIASFGKHLPAD 72 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 466666666666777788878888874 999999999754
No 265
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=44.99 E-value=46 Score=27.43 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 90 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 90 k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
+.|++.+.+....+.|.||+++++.+-+.... ....+.+.|...|..+.+.
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~~~----~~~~v~~~L~~AGA~v~g~ 116 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGADDE----DVDAVRELLEQAGATVTGR 116 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCChH----HHHHHHHHHHHCCCeEEEE
Confidence 55665554433457899999999987655322 2566778999999998764
No 266
>PLN02347 GMP synthetase
Probab=44.91 E-value=2.1e+02 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=21.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
.||+||-+- .++|..+++.+.+ -|+.++++...
T Consensus 11 ~~IlIID~G-~~~t~~I~r~lre-----lgv~~~v~p~~ 43 (536)
T PLN02347 11 DVVLILDYG-SQYTHLITRRVRE-----LGVYSLLLSGT 43 (536)
T ss_pred CEEEEEECC-CcHHHHHHHHHHH-----CCCeEEEEECC
Confidence 468877532 4578888887764 26777776543
No 267
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.72 E-value=1.7e+02 Score=23.88 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=27.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.-.....+..-++...+.+++. |++++++++++.
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKI-GMISEIVHLEET 72 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 455666555556666777777777774 899999999764
No 268
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.60 E-value=1.2e+02 Score=21.81 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=58.0
Q ss_pred EEEecCcchHHHHHH-HHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCc
Q 028847 7 IVYYSMYGHVEKLAE-EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMM 85 (203)
Q Consensus 7 Iiy~S~~G~T~~la~-~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~ 85 (203)
|+.++..|..+-+.. .++..++. .| .+++++...-+..- ..+...+.|.=+++-....++-
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~~-~G--feVi~LG~~v~~e~---------------~v~aa~~~~adiVglS~l~~~~ 65 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFTN-AG--FNVVNLGVLSPQEE---------------FIKAAIETKADAILVSSLYGHG 65 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHHH-CC--CEEEECCCCCCHHH---------------HHHHHHHcCCCEEEEecccccC
Confidence 344666554444444 44455555 46 55677775433221 1345566666666666677777
Q ss_pred HHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcE
Q 028847 86 AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 140 (203)
Q Consensus 86 ~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~ 140 (203)
-..++.+++.+.. ..+.+++ +..+|...-+... ..+....|.+.|+.
T Consensus 66 ~~~~~~~~~~l~~----~gl~~~~---vivGG~~vi~~~d-~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 66 EIDCKGLRQKCDE----AGLEGIL---LYVGGNLVVGKQD-FPDVEKRFKEMGFD 112 (134)
T ss_pred HHHHHHHHHHHHH----CCCCCCE---EEecCCcCcChhh-hHHHHHHHHHcCCC
Confidence 7789999999852 2455544 2333332111111 22234567777754
No 269
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=43.91 E-value=37 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=18.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAAS 29 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~ 29 (203)
||+|||.|+-..... ..||+.+.+.+..
T Consensus 1 ~~~kVLFVC~gN~cR-SpmAE~l~~~~~~ 28 (139)
T COG0394 1 MMMKVLFVCTGNICR-SPMAEALLRHLAP 28 (139)
T ss_pred CCceEEEEcCCCccc-CHHHHHHHHHhcc
Confidence 677999988444322 3477777776643
No 270
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=43.81 E-value=42 Score=28.61 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=24.8
Q ss_pred eEEEEEecCcc--hHHHHHHHHHHHhhcc-CCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYG--HVEKLAEEIQKGAASV-EGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G--~T~~la~~i~~~l~~~-~g~~v~~~~l~~~ 43 (203)
||+|--.|-.| .+..+++++++++++. +++++..+.+.|=
T Consensus 2 kiliApDsFKgslsa~ea~~ai~~g~~~~~p~~~~~~~PlaDG 44 (377)
T PF02595_consen 2 KILIAPDSFKGSLSAAEAAEAIAEGIRRVFPDAEVVLIPLADG 44 (377)
T ss_dssp EEEE----BTTTB-HHHHHHHHHHHHHCCSTTSEEEE----SS
T ss_pred eEEEEccCCCCCcCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Confidence 99999989765 4888999999999875 5667777776663
No 271
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=43.61 E-value=1.4e+02 Score=23.36 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 32 GVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 32 g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|++++++...+.. . ...++.++|+|||..-
T Consensus 23 G~~v~~v~~~~~~-~-----------------~~~~l~~~d~liipGG 52 (238)
T cd01740 23 GFEAEDVWHNDLL-A-----------------GRKDLDDYDGVVLPGG 52 (238)
T ss_pred CCCEEEEeccCCc-c-----------------ccCCHhhCCEEEECCC
Confidence 7788888775421 0 0225788999988754
No 272
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=43.41 E-value=76 Score=22.36 Aligned_cols=41 Identities=29% Similarity=0.281 Sum_probs=29.4
Q ss_pred CCceEEEEEecCcchHHHHHHHH--HHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEI--QKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i--~~~l~~~~g~~v~~~~l~~ 42 (203)
|+.|++|+..|..+|.+++..-+ +..+.. -|.+|+++-.-+
T Consensus 1 ~~~~v~i~~t~G~~~~~r~ya~f~~A~~a~s-mg~dV~iF~t~d 43 (120)
T COG2044 1 MADKVLIVVTSGPNNPERAYAPFVMATAAAS-MGYDVTIFFTMD 43 (120)
T ss_pred CCceEEEEEecCCCCHHHHHhHHHHHHHHHh-CCCceEEEEEec
Confidence 45689999999888888887743 444444 488888875543
No 273
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=43.31 E-value=85 Score=23.40 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=39.1
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+++|..=. .+...+.+..+... . .+|.++.++...+..- +..++ ...+++..+|.|| +|=+
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~-~-~p~l~l~~~~~~el~~~~~~~~------------~~~~aia~ADii~-~sml 66 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRD-H-CPGLELSVFAAAELERDPEALE------------ECEAAIARADIIF-GSML 66 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhc-c-CCCeEEEEEeHHHhhcChHHHH------------HHHHHHHhCCEEE-eehh
Confidence 666665332 34444444444443 1 2688999988876521 11111 1246889999654 5555
Q ss_pred CCCCcHHHHHHHHH
Q 028847 81 RFGMMAAQFKAFLD 94 (203)
Q Consensus 81 y~~~~~~~lk~fld 94 (203)
+....-..+..-++
T Consensus 67 F~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 67 FIEDHVRPLLPALE 80 (164)
T ss_pred hhHHHHHHHHHHHH
Confidence 44333333333333
No 274
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=43.10 E-value=40 Score=24.76 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=26.8
Q ss_pred hccCeEEEecc-cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 69 AEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 69 ~~aD~iiigsP-~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.++|.|+|... .+.....+.++.||.+.. -++++++.++++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 100 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICGA 100 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 67898776653 333334566888888773 357887777664
No 275
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=42.94 E-value=1.2e+02 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=16.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHH
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQK 25 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~ 25 (203)
|+||++|-.+..|-|- |++.+..
T Consensus 1 MkrimliG~~g~GKTT-L~q~L~~ 23 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTT-LAQALNG 23 (143)
T ss_pred CceEEEECCCCCCHHH-HHHHHcC
Confidence 5789888878888876 4555543
No 276
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.88 E-value=57 Score=26.45 Aligned_cols=35 Identities=20% Similarity=-0.000 Sum_probs=28.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|+.|++-.....+..+++.+.+.+++ .|+++.+..
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~ 36 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDS 36 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 89988777677888899999998987 488887753
No 277
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=42.86 E-value=74 Score=20.83 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=24.8
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
+.+++..+|.||+..-+=- +.. ..|.||++.-..+..
T Consensus 32 t~~~i~~Ad~VIia~d~~i-----------~~~------~rf~gk~v~~~s~~~ 68 (88)
T PRK10474 32 TAEDVASADMVILTKDIGI-----------KFE------ERFAGKTIVRVNISD 68 (88)
T ss_pred CHHHHHhCCEEEEEecCCC-----------cch------hccCCCceEEecHHH
Confidence 4578999999999965421 111 257888887665543
No 278
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.72 E-value=59 Score=26.82 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=28.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|+||.|++-...-....+++.+.+.+.+ .|+++.+.+
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 37 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRAS 37 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 4589998877666688889999998877 487776543
No 279
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=42.49 E-value=1.1e+02 Score=21.09 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=40.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCCCChhhh---hccCeEEEecc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPTITPNEL---AEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l---~~aD~iiigsP 79 (203)
+..||.......+..-++...+.+++. |++++.+.++.... ..+.. ...++ .+-|+|++-.|
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~-------------~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKL-GIEFELIELPEDISEEELLE-------------LIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHH-T-EEEEEEE-TTSSHHHHHH-------------HHHHHHH-TT-SEEEEESS
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHc-CCceEEEECCCCcCHHHHHH-------------HHHHHhCCCCCCEEEEcCC
Confidence 566676666666777788888888774 99999999965432 22221 12222 35589999999
Q ss_pred cCCCC
Q 028847 80 TRFGM 84 (203)
Q Consensus 80 ~y~~~ 84 (203)
...+-
T Consensus 97 LP~~i 101 (117)
T PF00763_consen 97 LPKHI 101 (117)
T ss_dssp SSTTS
T ss_pred CCCCc
Confidence 96443
No 280
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=42.41 E-value=43 Score=27.24 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=26.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
||+|+-|...|+.. .+..+++.+.+. |.+|.++-
T Consensus 2 ~i~~~~g~~~g~~~-~~~~La~~L~~~-g~eV~vv~ 35 (348)
T TIGR01133 2 KVVLAAGGTGGHIF-PALAVAEELIKR-GVEVLWLG 35 (348)
T ss_pred eEEEEeCccHHHHh-HHHHHHHHHHhC-CCEEEEEe
Confidence 89998888888877 556677777763 88888874
No 281
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=42.33 E-value=98 Score=22.39 Aligned_cols=63 Identities=14% Similarity=-0.032 Sum_probs=41.0
Q ss_pred CCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCCCccceecCCCCCCCCHHHHH
Q 028847 104 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELA 183 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 183 (203)
.|+||++.+++-.++..|.. +.+.+...|..++-....|. +. ...+..|=++++
T Consensus 3 ~l~gKkviiiGdRDGiPgpA------ie~c~k~~gaevvfs~TECf--------Vc------------taAGAMDLEnQ~ 56 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGPA------IEECVKTTGAEVVFSSTECF--------VU------------TAAGAMDLENQK 56 (154)
T ss_pred cccCcEEEEEecCCCCCcHH------HHHHHhccCceEEEEeeeEE--------Ee------------ecccccchHHHH
Confidence 57999999998877654431 33566667888875543320 00 111467888888
Q ss_pred HHHHHHHHH
Q 028847 184 QAFHQGKYF 192 (203)
Q Consensus 184 ~~~~~g~~l 192 (203)
+.++++++.
T Consensus 57 Rvk~~aEk~ 65 (154)
T PRK13265 57 RVKDLAEKF 65 (154)
T ss_pred HHHHHHHhc
Confidence 888887764
No 282
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.29 E-value=1.9e+02 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=27.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++++++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKV-GIYSELYEFPAD 72 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 455665555555666677777777774 899999998864
No 283
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=42.17 E-value=1.3e+02 Score=21.69 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=30.5
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...--..++.++..+.. ...+.++++.++++-
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 109 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANK 109 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeC
Confidence 457899999999886543323445666665531 123456788887764
No 284
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=41.97 E-value=75 Score=23.14 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=44.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcc--C--CceEEE--EEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASV--E--GVEAKL--WQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~--~--g~~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
||+++-.+..|-|..+.+.+.+.+.+. + +.++.. +.+..... .+.-......+.........+.++|++|+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPF--SLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEE--EEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 677776667899987777766545321 1 112111 11111000 000000000111111224457899999999
Q ss_pred cccCCCCcHHHHHHHHHHh
Q 028847 78 FPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 78 sP~y~~~~~~~lk~fld~~ 96 (203)
...-...--..++.|++.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~ 98 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDA 98 (170)
T ss_pred EECcCHHHHHHHHHHHHHH
Confidence 8774433334456677665
No 285
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=41.97 E-value=84 Score=27.89 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=36.4
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhH
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDV 48 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~ 48 (203)
+++-||.+|..+ ++..+++.+.+.++++ |-..-++-+.+..+..+
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~-GkK~yl~~vgkinpaKL 327 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTA-GKKHYLFVVGKPNPAKL 327 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCHHHH
Confidence 357889999765 6889999999999984 88888888888766544
No 286
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.94 E-value=1.9e+02 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=28.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++.+.+.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 73 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKV-GMGSEMIRLKEQ 73 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 455666565666777788888888774 999999998764
No 287
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=41.91 E-value=1.3e+02 Score=22.80 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=39.6
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCch---hHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 20 AEEIQKGAASVEGVEAKLWQVPETLSE---DVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 20 a~~i~~~l~~~~g~~v~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
...+.+.+++ .|.++..+.+.+..+. .... ....+..+|.|||.||. .++.|++.+
T Consensus 10 ~~~l~~~L~~-~G~~~~~~p~~~~~~~~~~~~~~-------------~~~~~~~~~~iiftS~~-------av~~~~~~~ 68 (239)
T cd06578 10 ADELAALLEA-LGAEVLELPLIEIEPLDDAELDA-------------ALADLDEYDWLIFTSPN-------AVEAFFEAL 68 (239)
T ss_pred hHHHHHHHHH-cCCcEEEeeeEEEecCChHHHHH-------------HHHhcCCCCEEEEECHH-------HHHHHHHHH
Confidence 4455566665 3777776666543211 0100 12345689999999984 566666665
Q ss_pred cccccccCCCCCeEEEEE
Q 028847 97 GGLWRSQQLAGKPAGIFY 114 (203)
Q Consensus 97 ~~~~~~~~l~gK~~~~~~ 114 (203)
...+ ...+.++++++++
T Consensus 69 ~~~~-~~~~~~~~~~avG 85 (239)
T cd06578 69 EELG-LRALAGLKIAAVG 85 (239)
T ss_pred HhhC-CccccCCEEEEEC
Confidence 3211 1134555555543
No 288
>PRK09301 circadian clock protein KaiB; Provisional
Probab=41.83 E-value=31 Score=23.60 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=42.1
Q ss_pred EEEEEec-CcchHHHHHHHHHHHhhcc--CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 5 VYIVYYS-MYGHVEKLAEEIQKGAASV--EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 5 ilIiy~S-~~G~T~~la~~i~~~l~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+|=+|.+ .+-++++..+.+.+.+++. +.++.+++|+.+- ..+.+.+. |++||+-
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q----------------------PelAE~~~-IvATPTL 64 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN----------------------PQLAEEDK-ILATPTL 64 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC----------------------HhHHhHCC-eEEecHH
Confidence 3444544 3556777777776666543 3468899998762 23444443 5688887
Q ss_pred CCCcHHHHHHHHHHh
Q 028847 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~lk~fld~~ 96 (203)
--..|.+.+.++-.+
T Consensus 65 IK~~P~P~rriiGDl 79 (103)
T PRK09301 65 AKILPPPVRKIIGDL 79 (103)
T ss_pred hhcCCCCcceeeccc
Confidence 666677766666544
No 289
>PRK06835 DNA replication protein DnaC; Validated
Probab=41.69 E-value=33 Score=28.56 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=39.1
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
+-+++||.+ +|-|. |+.+|+..+-. .|..|-++...+. ...+...... ...+... ..+.+.++|.|||=
T Consensus 184 ~~Lll~G~~GtGKTh-La~aIa~~l~~-~g~~V~y~t~~~l-~~~l~~~~~~-~~~~~~~-~~~~l~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTF-LSNCIAKELLD-RGKSVIYRTADEL-IEILREIRFN-NDKELEE-VYDLLINCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHH-HHHHHHHHHHH-CCCeEEEEEHHHH-HHHHHHHHhc-cchhHHH-HHHHhccCCEEEEe
Confidence 457788865 78898 67777777665 3778877776553 1111110000 0000000 14678899999974
No 290
>PRK08118 topology modulation protein; Reviewed
Probab=41.67 E-value=40 Score=24.88 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=18.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhh
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAA 28 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~ 28 (203)
|+||+|+-.+.+|.|- +|+.+++.+.
T Consensus 1 m~rI~I~G~~GsGKST-lak~L~~~l~ 26 (167)
T PRK08118 1 MKKIILIGSGGSGKST-LARQLGEKLN 26 (167)
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHhC
Confidence 3588876556678774 8888888874
No 291
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=41.67 E-value=1.2e+02 Score=24.87 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=45.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM 84 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
+++++.+.+.....+++.+++.+++. |+++++..+... .... ....-.++|..+.+.-.....
T Consensus 296 ~~~~~~~~~~~~~~~a~~l~~~l~~~-Gi~v~i~~~~~~--~~~~--------------~~~~~~~~d~~~~~~~~~~~~ 358 (374)
T PF00496_consen 296 LIILYTSDDPIWKAIAEALQEQLKKI-GIKVEIKPVDFN--DTYD--------------KRLRAGDFDMALSGWSGDYPD 358 (374)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHHT-TEEEEEEEESHH--HHHH--------------HHHHCTSESEEEEEEESSSSS
T ss_pred ccccccccccchHHHHHHHHHHHhhc-ceeEEEEEeChH--HHHH--------------HHhhCCCcCEEEEecCCCCCC
Confidence 55556666667789999999999994 999988877430 1000 012345788888865444555
Q ss_pred cHHHHHHHH
Q 028847 85 MAAQFKAFL 93 (203)
Q Consensus 85 ~~~~lk~fl 93 (203)
.+..+..|+
T Consensus 359 ~~~~~~~~~ 367 (374)
T PF00496_consen 359 PYSFLYPFF 367 (374)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555544
No 292
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=41.58 E-value=92 Score=22.49 Aligned_cols=39 Identities=28% Similarity=0.183 Sum_probs=27.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|-+|..||.+|.+-+-..-|-.++.++.. .|.||.++--
T Consensus 1 ~~~k~~IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~T 39 (137)
T COG2210 1 MDKKLGIILASGTLDKAYAALIIASGAAA-MGYEVTVFFT 39 (137)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 34588999999765555555566777766 4889988754
No 293
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=41.54 E-value=55 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=29.1
Q ss_pred ceEEEE-EecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCC-CCChhhhhccCeEEEeccc
Q 028847 3 TKVYIV-YYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVP-TITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIi-y~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~iiigsP~ 80 (203)
++|.|| |+|. | +.-| .-|++ .|++|.+-.-.......... .+.+. ....+.+.++|.|++..|-
T Consensus 5 k~IAViGyGsQ-G--~a~A----lNLrD-SG~~V~Vglr~~s~s~~~A~------~~Gf~v~~~~eAv~~aDvV~~L~PD 70 (165)
T PF07991_consen 5 KTIAVIGYGSQ-G--HAHA----LNLRD-SGVNVIVGLREGSASWEKAK------ADGFEVMSVAEAVKKADVVMLLLPD 70 (165)
T ss_dssp SEEEEES-SHH-H--HHHH----HHHHH-CC-EEEEEE-TTCHHHHHHH------HTT-ECCEHHHHHHC-SEEEE-S-H
T ss_pred CEEEEECCChH-H--HHHH----HHHHh-CCCCEEEEecCCCcCHHHHH------HCCCeeccHHHHHhhCCEEEEeCCh
Confidence 578877 6664 3 2223 34444 38887655444321111011 01111 1125678999999999985
No 294
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=41.52 E-value=2e+02 Score=23.59 Aligned_cols=65 Identities=14% Similarity=0.010 Sum_probs=42.1
Q ss_pred hhhhhc---cCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEE
Q 028847 65 PNELAE---ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 65 ~~~l~~---aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
..++.+ -|..||..| +..+-..++.+. -+|-+.+++.|.|-. .+. .+.+.+...+.|+.+
T Consensus 57 v~dlp~~~~~DlAvi~vp------~~~v~~~l~e~~-------~~gvk~avI~s~Gf~---~~~-~~~l~~~a~~~girv 119 (291)
T PRK05678 57 VAEAVEATGANASVIYVP------PPFAADAILEAI-------DAGIDLIVCITEGIP---VLD-MLEVKAYLERKKTRL 119 (291)
T ss_pred HHHHhhccCCCEEEEEcC------HHHHHHHHHHHH-------HCCCCEEEEECCCCC---HHH-HHHHHHHHHHcCCEE
Confidence 345544 599999999 344455555542 257778777777652 111 235677778899999
Q ss_pred ecCCC
Q 028847 142 VPIGY 146 (203)
Q Consensus 142 v~~~~ 146 (203)
+|...
T Consensus 120 lGPNc 124 (291)
T PRK05678 120 IGPNC 124 (291)
T ss_pred ECCCC
Confidence 98653
No 295
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=40.90 E-value=68 Score=22.92 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=28.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
.++++.|.|...+..|+.+++-+++ .|..+++..+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~-~g~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEE-KGINVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 5788999999999999999999988 488888877654
No 296
>PRK05642 DNA replication initiation factor; Validated
Probab=40.71 E-value=73 Score=24.91 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=25.3
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+.++|||+. .|.|.- ++++...+.+. |..+-+++..+
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~~-~~~v~y~~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQR-GEPAVYLPLAE 83 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHhC-CCcEEEeeHHH
Confidence 357788876 799985 66777666552 66777776654
No 297
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.56 E-value=2e+02 Score=23.46 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=29.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++++++.
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 70 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDI-GVRSLMFRLPEA 70 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 556666665656677788888888874 999999999864
No 298
>PRK00758 GMP synthase subunit A; Validated
Probab=40.55 E-value=1.3e+02 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=18.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|+||-. ..+++..+++.+.+ .|+++.+++.
T Consensus 2 i~iid~-~~~~~~~i~~~l~~-----~g~~~~~~~~ 31 (184)
T PRK00758 2 IVVVDN-GGQYNHLIHRTLRY-----LGVDAKIIPN 31 (184)
T ss_pred EEEEEC-CCchHHHHHHHHHH-----cCCcEEEEEC
Confidence 666652 35678887776654 2667777664
No 299
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=40.46 E-value=70 Score=22.93 Aligned_cols=51 Identities=10% Similarity=-0.047 Sum_probs=30.6
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+...+-...--..++.|++.+..........+.|+.++++=
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNK 123 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 356789999999877765544456666665432111112246677877763
No 300
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.26 E-value=85 Score=23.98 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=30.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|.||-+. .||...+.+++.+ + |+++.+++ + .+++.++|+||+--+
T Consensus 2 i~iidyg-~gN~~s~~~al~~-~----g~~~~~v~--~----------------------~~~l~~~D~lIlPG~ 46 (192)
T PRK13142 2 IVIVDYG-LGNISNVKRAIEH-L----GYEVVVSN--T----------------------SKIIDQAETIILPGV 46 (192)
T ss_pred EEEEEcC-CccHHHHHHHHHH-c----CCCEEEEe--C----------------------HHHhccCCEEEECCC
Confidence 5666544 6788888888865 2 66676653 2 246788999988555
No 301
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=40.24 E-value=92 Score=24.56 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=23.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|++|+.|+-.-.+-.-..++.++. .+ |.+++.+...+.
T Consensus 1 ~~~kvaVi~fpGtN~d~d~~~A~~-~a----G~~~~~V~~~d~ 38 (231)
T COG0047 1 ARPKVAVLRFPGTNCDYDMAAAFE-RA----GFEAEDVWHSDL 38 (231)
T ss_pred CCceEEEEEcCCcCchHHHHHHHH-Hc----CCCceEEEeeec
Confidence 346999887654433344566665 32 667777777664
No 302
>PRK08181 transposase; Validated
Probab=40.10 E-value=26 Score=28.28 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=36.7
Q ss_pred EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 5 VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 5 ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
-++++|.+ +|-|. +|.+++..+.+ .|..|.++...+.- ..+.... .+.........+..+|.|||==
T Consensus 108 nlll~Gp~GtGKTH-La~Aia~~a~~-~g~~v~f~~~~~L~-~~l~~a~----~~~~~~~~l~~l~~~dLLIIDD 175 (269)
T PRK08181 108 NLLLFGPPGGGKSH-LAAAIGLALIE-NGWRVLFTRTTDLV-QKLQVAR----RELQLESAIAKLDKFDLLILDD 175 (269)
T ss_pred eEEEEecCCCcHHH-HHHHHHHHHHH-cCCceeeeeHHHHH-HHHHHHH----hCCcHHHHHHHHhcCCEEEEec
Confidence 46777776 78888 56677666655 37777777664421 1111100 0000001245678899999653
No 303
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=39.99 E-value=1.3e+02 Score=21.12 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=30.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++++..-.-...--..++.|++.+.. ...+.|+.++++-
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~-----~~~~~p~iiv~nK 115 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEA-----ECGDIPMVLVQTK 115 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 3457789999999876554433455666666531 3457788877764
No 304
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=39.64 E-value=1.2e+02 Score=25.78 Aligned_cols=15 Identities=13% Similarity=0.543 Sum_probs=12.2
Q ss_pred hhhhccCeEEEeccc
Q 028847 66 NELAEADGILLGFPT 80 (203)
Q Consensus 66 ~~l~~aD~iiigsP~ 80 (203)
.++.++|.++++.|.
T Consensus 100 ~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 100 ADFSDVDAVFCCLPH 114 (381)
T ss_pred HHhcCCCEEEEcCCH
Confidence 446789999999887
No 305
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=39.61 E-value=1.5e+02 Score=23.61 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=30.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCc-eEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||++|-. .++.....++...+.+++. |+ +++.+++.+... ...+. ..+.+.+||+|+|+-
T Consensus 30 rI~~ipt-AS~~~~~~~~~~~~~~~~l-G~~~v~~l~i~~r~~------------a~~~~-~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 30 IIVIITS-ASEEPREVGERYITIFSRL-GVKEVKILDVRERED------------ASDEN-AIALLSNATGIFFTG 90 (250)
T ss_pred eEEEEeC-CCCChHHHHHHHHHHHHHc-CCceeEEEecCChHH------------ccCHH-HHHHHhhCCEEEEeC
Confidence 5555532 1223333455555555553 65 466666643110 00011 245799999999984
No 306
>PRK07567 glutamine amidotransferase; Provisional
Probab=39.56 E-value=1.8e+02 Score=22.96 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=9.8
Q ss_pred hhhccCeEEEecc
Q 028847 67 ELAEADGILLGFP 79 (203)
Q Consensus 67 ~l~~aD~iiigsP 79 (203)
++.++|+|||.-.
T Consensus 48 ~~~~~dgvIi~Gg 60 (242)
T PRK07567 48 DLDDYSGVIVGGS 60 (242)
T ss_pred CHhhccEEEEcCC
Confidence 6778999888644
No 307
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=39.52 E-value=2.1e+02 Score=23.36 Aligned_cols=106 Identities=14% Similarity=0.023 Sum_probs=59.1
Q ss_pred chHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhhhhc---cCeEEEecccCCCCcHHHH
Q 028847 14 GHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAE---ADGILLGFPTRFGMMAAQF 89 (203)
Q Consensus 14 G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~---aD~iiigsP~y~~~~~~~l 89 (203)
|-|..++..+.+.+.. .|.+ .+..++.-. -..+. ...+. + ...++.+ -|..||..| +..+
T Consensus 13 g~~~~~~~~~~~~~~~-~g~~-~v~~V~p~~~~~~v~-G~~~y-----~--sv~dlp~~~~~Dlavi~vp------a~~v 76 (286)
T TIGR01019 13 GITGSQGSFHTEQMLA-YGTN-IVGGVTPGKGGTTVL-GLPVF-----D--SVKEAVEETGANASVIFVP------APFA 76 (286)
T ss_pred cCCcHHHHHHHHHHHh-CCCC-EEEEECCCCCcceec-Ceecc-----C--CHHHHhhccCCCEEEEecC------HHHH
Confidence 5556677777776665 3555 333443210 00000 00111 1 2445544 599999999 3445
Q ss_pred HHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 90 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 90 k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
...++.+. -+|-+.+++.+.|.. .. ..+.+.+...+.|+.++|...
T Consensus 77 ~~~l~e~~-------~~Gvk~avIis~Gf~-e~---~~~~l~~~a~~~girilGPNc 122 (286)
T TIGR01019 77 ADAIFEAI-------DAGIELIVCITEGIP-VH---DMLKVKRYMEESGTRLIGPNC 122 (286)
T ss_pred HHHHHHHH-------HCCCCEEEEECCCCC-HH---HHHHHHHHHHHcCCEEECCCC
Confidence 55555552 257778878787752 11 124566777888999998653
No 308
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=39.22 E-value=69 Score=22.95 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=28.0
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++++..-+-...--..++.|+..+.. ....+.++.++++-
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piivv~nK 115 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT----YSWDNAQVILVGNK 115 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCCEEEEEEC
Confidence 3457889999998554332222344556555531 12346778887773
No 309
>PRK10638 glutaredoxin 3; Provisional
Probab=39.21 E-value=95 Score=19.61 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=21.1
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|.+|. +|+++ -+.+.++-+.+.+ .|++.+.+++..
T Consensus 1 m~~v~-ly~~~~Cp~C~~a~~~L~~-----~gi~y~~~dv~~ 36 (83)
T PRK10638 1 MANVE-IYTKATCPFCHRAKALLNS-----KGVSFQEIPIDG 36 (83)
T ss_pred CCcEE-EEECCCChhHHHHHHHHHH-----cCCCcEEEECCC
Confidence 34555 55554 4666665554443 377888888864
No 310
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=39.05 E-value=2.1e+02 Score=23.19 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=35.5
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
+|.||+..|.. ..++..++.+.. .++...+.+-++...+ . ....+.+.+...|..++..++.
T Consensus 60 advVi~~vp~~-----~~~~~v~~~i~~-----~l~~g~ivid~st~~~---~--~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG-----EVTESVIKDLYP-----LLSPGDIVVDGGNSRY---K--DDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc-----hHHHHHHHHHhc-----cCCCCCEEEECCCCCc---h--hHHHHHHHHHHcCCeEEeCCCC
Confidence 69999999964 355666665531 2322233322222221 1 1445667788889888877654
No 311
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=39.04 E-value=2.1e+02 Score=25.71 Aligned_cols=71 Identities=21% Similarity=0.133 Sum_probs=36.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC--------CCCCch--hHHHHHHHHH
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS--------QGGGQE--TTPLTAITQL 134 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~--------~~~~~~--~~~~~~~~~l 134 (203)
.+++.++|++||+.|.-..+-. -+.-||.. ..+|.++.++.-.-. .+++.. ..-..+...|
T Consensus 229 p~~l~d~d~LvI~~P~~~ls~~--e~~~Ldqf-------l~~GG~ll~~~dp~~~~~~~~~~~~g~~~~~~~~~~L~~Ll 299 (552)
T TIGR03521 229 LADLKKFDLIVIAKPTEAFSER--EKYILDQY-------IMNGGKALFLVDAVAMEMDSLYNGDGATFALPRDLNLDDLL 299 (552)
T ss_pred cccccCcCEEEEeCCCccCCHH--HHHHHHHH-------HHcCCeEEEEecCcccccccccccCCccccCCCCCCHHHHH
Confidence 3457799999999997444332 23333332 124666666552210 001000 0001355777
Q ss_pred HHcCcEEecC
Q 028847 135 VHHGMIFVPI 144 (203)
Q Consensus 135 ~~~g~~~v~~ 144 (203)
..+|+.+-+.
T Consensus 300 ~~~Gi~~~~~ 309 (552)
T TIGR03521 300 FKYGIRINPD 309 (552)
T ss_pred HHhCeEeCcC
Confidence 8888877543
No 312
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=38.94 E-value=68 Score=25.22 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=30.0
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||+++..+. .|...+.+..+++.+.+ .|.+|.++.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAE-KGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 578777664 47788888888899986 4889998877654
No 313
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=38.85 E-value=39 Score=26.23 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=28.5
Q ss_pred hhhccCeEEEec---ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigs---P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+.++|+|+|.. |.|...-...+..|+.+.. -++|+++.++++
T Consensus 87 ~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaIC~g 132 (221)
T cd03141 87 DPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFY-------ENGKVVAAVCHG 132 (221)
T ss_pred CHhHceEEEECCCcccccccccCHHHHHHHHHHH-------HcCCEEEEEcch
Confidence 356899999975 3454545667888887763 256777666653
No 314
>PRK10342 glycerate kinase I; Provisional
Probab=38.71 E-value=70 Score=27.34 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=30.1
Q ss_pred eEEEEEecCcch--HHHHHHHHHHHhhcc-CCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGH--VEKLAEEIQKGAASV-EGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~--T~~la~~i~~~l~~~-~g~~v~~~~l~~ 42 (203)
||+|.-.|-.|. +..++++|++++++. +.+++..+.+.|
T Consensus 2 kiliApDsFKGsLsA~eaa~ai~~G~~~~~p~~~v~~~P~AD 43 (381)
T PRK10342 2 KIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVAD 43 (381)
T ss_pred cEEEEecCCCCccCHHHHHHHHHHHHHHhCCCCeEEEeecCC
Confidence 899998887653 788899999999875 456666666665
No 315
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=38.19 E-value=1.2e+02 Score=21.68 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=29.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++++..-+-.-.--..++.|++.+... ...+.++.++++-
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~----~~~~~~iilvgnK 114 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNK 114 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 34567899999997654433334567777776421 2235677777664
No 316
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=38.09 E-value=1.1e+02 Score=20.97 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=28.0
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhh
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG 50 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~ 50 (203)
++|||+|.+... ..-++...+++.+... | .+-++|..+.+..-+|.
T Consensus 20 ~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~-g-T~~~vdCgd~e~kKLCK 68 (112)
T cd03067 20 NNVLVLYSKSAKSAEALLKLLSDVAQAVKGQ-G-TIAWIDCGDSESRKLCK 68 (112)
T ss_pred CcEEEEEecchhhHHHHHHHHHHHHHHhcCc-e-eEEEEecCChHHHHHHH
Confidence 479999977643 3444445555555432 3 67889988755444443
No 317
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=38.01 E-value=1.5e+02 Score=23.68 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=34.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||.|| |. | .|...++..+.+ .|.+|..+|......+.... .+.. +... ...+.+.++|.||+++|.
T Consensus 2 ~I~II-G~--G---~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~-~g~~--~~~~-~~~~~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIV-GL--G---LIGGSLGLDLRS-LGHTVYGVSRRESTCERAIE-RGLV--DEAS-TDLSLLKDCDLVILALPI 67 (279)
T ss_pred eEEEE-ee--c---HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-CCCc--cccc-CCHhHhcCCCEEEEcCCH
Confidence 77766 32 2 244455555554 37788888764322111111 1100 0000 112457899999999995
No 318
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.79 E-value=72 Score=26.16 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=28.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|+||+|++-...-....+++.+.+.+.+ .|+++.+.
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~ 40 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLD 40 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 4689999877777788899999998877 48777664
No 319
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=37.68 E-value=1.3e+02 Score=22.56 Aligned_cols=52 Identities=8% Similarity=-0.077 Sum_probs=29.0
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-.-.--..++.|++.+..........+.|+.++++-
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK 119 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANK 119 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEC
Confidence 3457899999998876442222334556655432100012256678777764
No 320
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.54 E-value=1.4e+02 Score=20.88 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=33.1
Q ss_pred hccCeEEE-ecccCCCCc----------HHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHc
Q 028847 69 AEADGILL-GFPTRFGMM----------AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 137 (203)
Q Consensus 69 ~~aD~iii-gsP~y~~~~----------~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~ 137 (203)
..||+|++ |+|.-.-.. -..+|..|+.+ -+...++.+.-.+...+......+.++.+.+.+.
T Consensus 51 ~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~-------Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~l 123 (124)
T PF02662_consen 51 KGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEEL-------GIEPERVRLYWISAPEGKRFAEIVNEFTERIKEL 123 (124)
T ss_pred cCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHc-------CCChhHeEEEEeCcccHHHHHHHHHHHHHHHHHc
Confidence 56999999 777543222 12345555555 3555566655444443333333355555555544
Q ss_pred C
Q 028847 138 G 138 (203)
Q Consensus 138 g 138 (203)
|
T Consensus 124 G 124 (124)
T PF02662_consen 124 G 124 (124)
T ss_pred C
Confidence 3
No 321
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=37.50 E-value=1.7e+02 Score=21.97 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=22.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+|. ...+.|..+++.+.+ . |++++++.-..
T Consensus 2 il~id-~~dsf~~nl~~~l~~-~----~~~~~v~~~~~ 33 (191)
T PRK06774 2 LLLID-NYDSFTYNLYQYFCE-L----GTEVMVKRNDE 33 (191)
T ss_pred EEEEE-CCCchHHHHHHHHHH-C----CCcEEEEeCCC
Confidence 66665 446688999998875 2 66888877554
No 322
>PRK10853 putative reductase; Provisional
Probab=37.46 E-value=76 Score=22.08 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=23.0
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
+.||+.++ +.+++..+.+.+ .|++++++|+.+.++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~d~~k~p~ 37 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-----QGIDYRFHDYRVDGL 37 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-----cCCCcEEeehccCCc
Confidence 35788875 555554444433 488999999987543
No 323
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.24 E-value=2.7e+02 Score=23.91 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=21.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|++||||+-++.. +..+...+++. |+.+-.++-.
T Consensus 1 ~~~~ililg~g~~------~~~~~~~a~~l-G~~~v~~~~~ 34 (450)
T PRK06111 1 MFQKVLIANRGEI------AVRIIRTCQKL-GIRTVAIYSE 34 (450)
T ss_pred CcceEEEECCcHH------HHHHHHHHHHc-CCeEEEEech
Confidence 7889999876643 34444455553 7777777643
No 324
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=37.08 E-value=1.6e+02 Score=21.30 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=46.2
Q ss_pred CceEEEE-EecC----cchHHHHHHHHHHH-hhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEE
Q 028847 2 ATKVYIV-YYSM----YGHVEKLAEEIQKG-AASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGIL 75 (203)
Q Consensus 2 m~kilIi-y~S~----~G~T~~la~~i~~~-l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 75 (203)
|+|++|+ +|.. .|---.+++.+++. ... ..+++++|.....+..+.. ...+..+|.+|
T Consensus 2 ~~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~--~~~v~vid~gt~~~~~l~~--------------~~~~~~~d~vI 65 (153)
T TIGR00130 2 NHEILVVGCGNILFGDDGFGPAVIEYLKENGVEK--PDNVCLIDAGTGAPHFVFT--------------LIPQSKWKKII 65 (153)
T ss_pred CceEEEEEeCccccccCcHhHHHHHHHHHhCCCC--CCCeEEEECCCcHHHHHHH--------------HhhhcCCCEEE
Confidence 5688877 4554 36667788888653 221 1248888876543322111 01357899999
Q ss_pred EecccCCCCcHHHHHH
Q 028847 76 LGFPTRFGMMAAQFKA 91 (203)
Q Consensus 76 igsP~y~~~~~~~lk~ 91 (203)
|.=.+..+..|+.+..
T Consensus 66 ivDA~~~~~~PG~v~~ 81 (153)
T TIGR00130 66 VVDIADFGAEPGTLRV 81 (153)
T ss_pred EEEccCCCcCCCEEEE
Confidence 9988877778876543
No 325
>PRK03995 hypothetical protein; Provisional
Probab=37.08 E-value=1.3e+02 Score=24.33 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=17.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGA 27 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l 27 (203)
++||+....--+..+++.+.+.+
T Consensus 3 ~~iv~S~~DpAs~~i~~~L~~~~ 25 (267)
T PRK03995 3 YLIVYSKKDPASQNIKELLIELF 25 (267)
T ss_pred EEEEEeCCChhhHHHHHHHHHhc
Confidence 77788777777788888887755
No 326
>PRK00211 sulfur relay protein TusC; Validated
Probab=37.02 E-value=97 Score=21.57 Aligned_cols=39 Identities=5% Similarity=0.110 Sum_probs=19.6
Q ss_pred CceEEEEEe-cCcch--HHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYY-SMYGH--VEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~-S~~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|+++|.. +|+|+ ++.-.+...... . -+.+|.++-+.|
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~-a-~~~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATS-A-FTEDIGVFFIDD 42 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHh-c-ccCCeeEEEEhh
Confidence 458887764 46775 333333222211 1 133677776654
No 327
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.94 E-value=90 Score=21.75 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=22.8
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
+.||+++. +.+++..+++.+ +|++.+++|+....+
T Consensus 3 itiy~~p~C~t~rka~~~L~~-----~gi~~~~~~y~~~~~ 38 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE-----HGIEYTFIDYLKTPP 38 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCcEEEEeecCCC
Confidence 34688875 555554444433 488999999887544
No 328
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=36.92 E-value=2.4e+02 Score=24.82 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=50.0
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhh---hcCC-C-CCCCCCCCChhhhh-ccCeE
Q 028847 3 TKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG---KMGA-G-PKSDVPTITPNELA-EADGI 74 (203)
Q Consensus 3 ~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~---~~~~-~-~~~~~~~~~~~~l~-~aD~i 74 (203)
++|+|+.|+. .|.-..+|+.+.. .|.+|.++-+.......... .+.. . +...... ..+.+. .+|.|
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~-----~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~~dlI 133 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHH-----FGYKPSICYPKRTDKPLYNGLVTQLESLSVPFLSVED-LPSDLSSQFDIV 133 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH-----CCCceEEEEECCCCCHHHHHHHHHHHHcCCceecccc-cchhhccCCcEE
Confidence 3789999885 3556666666543 37788888776543221111 1110 0 0000000 012333 57877
Q ss_pred E---EecccCCCCcHHHHHHHHHHhc
Q 028847 75 L---LGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 75 i---igsP~y~~~~~~~lk~fld~~~ 97 (203)
| ||+-. .+.+.+.+..+|+.++
T Consensus 134 VDaLfGtG~-~g~l~~~~~~lI~~iN 158 (462)
T PLN03049 134 VDAMFGFSF-HGAPRPPFDDLIQKLV 158 (462)
T ss_pred EEecccccc-CCCCchHHHHHHHHHH
Confidence 6 66665 6888999999999885
No 329
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=36.90 E-value=1.5e+02 Score=20.87 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=31.8
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+........-...+..|+..+... .-.+.++.++++-
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK 114 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNK 114 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEc
Confidence 4567899999998887655555667777765321 2246777777764
No 330
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.89 E-value=2e+02 Score=22.31 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=27.7
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||.+|..+. ......+.+.+.+.+++ .|.++.++....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~~v~~~~~~~ 40 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGVDVEYRGPET 40 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCEEEEECCCC
Confidence 566666543 46688899999999888 488887776543
No 331
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.79 E-value=2.4e+02 Score=23.15 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=28.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.-.....+..-++...+.+++. |++++++.+++.
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 78 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERV-GIRAEDQFLPAD 78 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 455666555556677778778888774 999999999764
No 332
>PRK07206 hypothetical protein; Provisional
Probab=36.69 E-value=48 Score=28.16 Aligned_cols=34 Identities=29% Similarity=0.202 Sum_probs=20.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||++++||-+..+| ..+++ .+++ .|.++-.++-.
T Consensus 1 ~~k~~liv~~~~~~--~~~~~----a~~~-~G~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPFSSG--KFLAP----AFKK-RGIEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCCchH--HHHHH----HHHH-cCCeEEEEEcC
Confidence 88788888765443 33444 4444 37776666544
No 333
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=36.66 E-value=1.4e+02 Score=22.14 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=29.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
++++||-.|.. +-+-++..|.+ .|+.|.+.+-...+ ..+.+.+||.||.+.+.-+
T Consensus 37 k~v~VvGrs~~-----VG~Pla~lL~~-~~atVt~~h~~T~~-------------------l~~~~~~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 37 KKVVVVGRSNI-----VGKPLAMLLLN-KGATVTICHSKTKN-------------------LQEITRRADIVVSAVGKPN 91 (160)
T ss_dssp -EEEEE-TTTT-----THHHHHHHHHH-TT-EEEEE-TTSSS-------------------HHHHHTTSSEEEE-SSSTT
T ss_pred CEEEEECCcCC-----CChHHHHHHHh-CCCeEEeccCCCCc-------------------ccceeeeccEEeeeecccc
Confidence 46777777752 22222333333 26677776665422 2457889999999998744
Q ss_pred C
Q 028847 83 G 83 (203)
Q Consensus 83 ~ 83 (203)
.
T Consensus 92 ~ 92 (160)
T PF02882_consen 92 L 92 (160)
T ss_dssp -
T ss_pred c
Confidence 3
No 334
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=36.60 E-value=87 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=26.9
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|-++-++|+++ +|.|..|.+.+...-.. |..|.++..
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~--g~~v~vfkp 40 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEA--GMKVLVFKP 40 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHc--CCeEEEEec
Confidence 45788889998 69999999988765543 656665543
No 335
>PRK06761 hypothetical protein; Provisional
Probab=36.36 E-value=79 Score=25.77 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
||+++++|.|-+ +|.|. +++.+++.+.. .|.++..+.
T Consensus 1 mm~~lIvI~G~~GsGKTT-la~~L~~~L~~-~g~~v~~~~ 38 (282)
T PRK06761 1 MMTKLIIIEGLPGFGKST-TAKMLNDILSQ-NGIEVELYL 38 (282)
T ss_pred CCCcEEEEECCCCCCHHH-HHHHHHHhcCc-CceEEEEEe
Confidence 777777777755 56554 78888888876 377777643
No 336
>PHA03075 glutaredoxin-like protein; Provisional
Probab=36.19 E-value=79 Score=22.17 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.0
Q ss_pred CceEEEEEecCc-chHHHHHHHHHHHhhc
Q 028847 2 ATKVYIVYYSMY-GHVEKLAEEIQKGAAS 29 (203)
Q Consensus 2 m~kilIiy~S~~-G~T~~la~~i~~~l~~ 29 (203)
||+++|+.|=+. |-++.+.+.+ +.++.
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l-~~led 28 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEAL-KELED 28 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHH-HHhhc
Confidence 589999999985 6666555544 66654
No 337
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=35.76 E-value=1.2e+02 Score=20.54 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=21.7
Q ss_pred eEEEEEecCcchHHHH--HHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKL--AEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~l--a~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
-|-|.+.|.+|+++.- -+.+...|.. .+++.+.+|+..
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a-~kI~fe~vDIa~ 41 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEA-KKIPFEEVDIAM 41 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHH-TT--EEEEETTT
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHH-cCCCcEEEeCcC
Confidence 3555556667874432 2355566666 488999999987
No 338
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=35.75 E-value=97 Score=18.36 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=21.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|.+++.+.-+.+..+...+.+......+++...+|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~ 40 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE 40 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc
Confidence 345545555577777666655443332345666666543
No 339
>PRK09932 glycerate kinase II; Provisional
Probab=35.62 E-value=86 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=29.8
Q ss_pred eEEEEEecCcch--HHHHHHHHHHHhhcc-CCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGH--VEKLAEEIQKGAASV-EGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~--T~~la~~i~~~l~~~-~g~~v~~~~l~~ 42 (203)
||+|--.|-.|. ...++++|++++++. +.+++..+.+.|
T Consensus 2 kiliApDsFKgsLsA~eaa~ai~~G~~~~~p~~~v~~~P~AD 43 (381)
T PRK09932 2 KIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIAD 43 (381)
T ss_pred cEEEEecCCCCccCHHHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 899998887653 678899999999875 455666666665
No 340
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=35.56 E-value=56 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.012 Sum_probs=27.9
Q ss_pred hhhhccCeEEEecc-cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP-~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+++.++|.||+... ......++.+..||.+.. -++|.++.++++
T Consensus 71 ~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 115 (322)
T PRK09393 71 ELLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICSG 115 (322)
T ss_pred cccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcHH
Confidence 35678999998542 112223566777877763 367777777765
No 341
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=35.49 E-value=1.4e+02 Score=21.99 Aligned_cols=67 Identities=6% Similarity=0.021 Sum_probs=44.9
Q ss_pred eEEEE-EecC----cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIV-YYSM----YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIi-y~S~----~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|++|+ +|.. .|---.+++.+++.... ..+++++|.....++ ..+.+..+|.+||.=
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~--~~~v~vid~gt~~~~-----------------ll~~l~~~d~vIiVD 62 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYIL--PDYVEILDGGTAGME-----------------LLGDMANRDHLIIAD 62 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCC--CCCeEEEeccccHHH-----------------HHHHHhCCCEEEEEE
Confidence 56666 5664 36677788888765432 125888888764332 135678999999998
Q ss_pred ccCCCCc-HHHH
Q 028847 79 PTRFGMM-AAQF 89 (203)
Q Consensus 79 P~y~~~~-~~~l 89 (203)
.+..+.. |+.+
T Consensus 63 A~~~g~~~PG~v 74 (164)
T PRK10466 63 AIVSKKNAPGTI 74 (164)
T ss_pred ecCCCCCCCCEE
Confidence 8877765 7754
No 342
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=35.44 E-value=30 Score=27.56 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=16.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHH
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQ 24 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~ 24 (203)
||++|+|+-|+..| +++++.+.
T Consensus 1 ~~~~IlvlgGT~eg--r~la~~L~ 22 (248)
T PRK08057 1 MMPRILLLGGTSEA--RALARALA 22 (248)
T ss_pred CCceEEEEechHHH--HHHHHHHH
Confidence 67899998887544 66676664
No 343
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=35.35 E-value=1.9e+02 Score=25.55 Aligned_cols=39 Identities=3% Similarity=0.112 Sum_probs=24.5
Q ss_pred CceEEEEEecC--cchHHHHH-HHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSM--YGHVEKLA-EEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~--~G~T~~la-~~i~~~l~~~~g~~v~~~~l~ 41 (203)
++|++||+--. .|+..++. +.+...+++ .|++++++.-.
T Consensus 111 ~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~ 152 (481)
T PLN02958 111 PKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETK 152 (481)
T ss_pred CcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 35788777433 45555554 467778877 48887766544
No 344
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=35.25 E-value=1.2e+02 Score=23.10 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=31.4
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++||..-+-.-.--..++.|++.+... ...+.++.++++-
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK 114 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNK 114 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 34578999999987766554445567777766421 2356677777663
No 345
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=35.19 E-value=2.3e+02 Score=23.27 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=44.5
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR- 81 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y- 81 (203)
.|.||.+|. -+++...|+.+ .+ .|++.+++++....|-+.-. ....+.+-..++..--.|
T Consensus 238 ~iTivt~Sr~v~~~leAA~~L----~~-~Gvs~EVInlrSirP~D~~t-------------I~~Sv~KT~~lvtVe~~~p 299 (359)
T KOG0524|consen 238 HITIVTYSRMVGHCLEAAETL----VA-KGVSAEVINLRSIRPFDIET-------------IGASVKKTNRLVTVEEGWP 299 (359)
T ss_pred ceEEEEechhHHHHHHHHHHH----Hh-cCCCceeEeeeccCcccHHH-------------HHHHHhhhceEEEEecccc
Confidence 578888886 35555555444 34 38899999998765422210 134566777777776666
Q ss_pred CCCcHHH-----HHHHHHHh
Q 028847 82 FGMMAAQ-----FKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~-----lk~fld~~ 96 (203)
.+++-+. +.+++|++
T Consensus 300 ~~gigaei~A~i~E~~fdyL 319 (359)
T KOG0524|consen 300 QFGIGAEICAQIMENAFDYL 319 (359)
T ss_pred ccchhHHHHHHHHHHHHhhh
Confidence 4554333 33455554
No 346
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=35.12 E-value=1.9e+02 Score=21.46 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE-eccc
Q 028847 16 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPT 80 (203)
Q Consensus 16 T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii-gsP~ 80 (203)
|..+++.+.+ .|++++++....... ...++.++|+||+ +.|-
T Consensus 11 ~~~~~~~l~~-----~G~~~~~~~~~~~~~------------------~~~~~~~~dgvil~gG~~ 53 (184)
T cd01743 11 TYNLVQYLRE-----LGAEVVVVRNDEITL------------------EELELLNPDAIVISPGPG 53 (184)
T ss_pred HHHHHHHHHH-----cCCceEEEeCCCCCH------------------HHHhhcCCCEEEECCCCC
Confidence 4555555543 377888888754311 1125678999887 5553
No 347
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=34.79 E-value=1.1e+02 Score=25.30 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||.||.||-+|.+ ...++.+.|.+++ ++++..+..
T Consensus 1 ~~~~VaIvGAtGy-----~G~eLlrlL~~hp--~~~l~~~~s 35 (313)
T PRK11863 1 MKPKVFIDGEAGT-----TGLQIRERLAGRS--DIELLSIPE 35 (313)
T ss_pred CCcEEEEECCCCH-----HHHHHHHHHhcCC--CeEEEEEec
Confidence 6678888776643 2445555565533 456655543
No 348
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=34.75 E-value=1.2e+02 Score=20.88 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=30.4
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
|||.||+|-.+. -+-.=|+.|.+.+.+ .+.++..+.+....
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTTS
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCCC
Confidence 399999988743 366667788888876 47788888887643
No 349
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=34.67 E-value=2.4e+02 Score=22.60 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=51.6
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcc
Q 028847 19 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 98 (203)
Q Consensus 19 la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~ 98 (203)
|...++..+.+ .|.+|.++|......+.. ...+..... ...+.+.++|.||+..|. +..++..+.....
T Consensus 10 mG~~iA~~l~~-~G~~V~~~dr~~~~~~~~-~~~g~~~~~----~~~~~~~~aDivi~~vp~-----~~~~~~v~~~~~~ 78 (291)
T TIGR01505 10 MGSPMSINLAK-AGYQLHVTTIGPEVADEL-LAAGAVTAE----TARQVTEQADVIFTMVPD-----SPQVEEVAFGENG 78 (291)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHHHHH-HHCCCcccC----CHHHHHhcCCEEEEecCC-----HHHHHHHHcCcch
Confidence 34444444444 377888776553211111 111111000 113457899999999996 3456655411000
Q ss_pred cccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 99 LWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 99 ~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
. .....+|+ +++..+.. .. .+...+.+.+...|+.++..++
T Consensus 79 ~-~~~~~~g~---iivd~st~-~~--~~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 79 I-IEGAKPGK---TLVDMSSI-SP--IESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred H-hhcCCCCC---EEEECCCC-CH--HHHHHHHHHHHHcCCCEEecCC
Confidence 0 00111232 22222221 11 1234566778778888887654
No 350
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=34.65 E-value=2.1e+02 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=12.9
Q ss_pred ceEEEEEecCcchHHHHHHHHH
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQ 24 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~ 24 (203)
.+|+|+..-. -.+..+++.+.
T Consensus 2 ~~ilIld~g~-q~~~li~r~~r 22 (198)
T COG0518 2 RKILILDFGG-QYLGLIARRLR 22 (198)
T ss_pred cEEEEEeCCC-cHhHHHHHHHH
Confidence 5788886332 24566666665
No 351
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.53 E-value=2.2e+02 Score=22.17 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=22.2
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
.+....+|.||+..|- ..++..++..-|.+
T Consensus 55 ~dA~~~aDVVvLAVP~--~a~~~v~~~l~~~~ 84 (211)
T COG2085 55 EDAAALADVVVLAVPF--EAIPDVLAELRDAL 84 (211)
T ss_pred HHHHhcCCEEEEeccH--HHHHhHHHHHHHHh
Confidence 4577889999999994 45666666666654
No 352
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=34.49 E-value=80 Score=25.44 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=29.1
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+++..+. .|-.+..+..+++.+.+ .|.+|.++....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVA-KGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhccc-CCceEEEEEEeC
Confidence 578777554 47788888889999987 488999887644
No 353
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=34.28 E-value=2e+02 Score=21.45 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
.+|+..+++.+.+ .|++++++...
T Consensus 8 ~~~~~~l~~~l~~-----~g~~~~~~~~~ 31 (188)
T TIGR00888 8 SQYTQLIARRLRE-----LGVYSELVPNT 31 (188)
T ss_pred chHHHHHHHHHHH-----cCCEEEEEeCC
Confidence 5688888887744 26778877654
No 354
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=34.23 E-value=54 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=27.5
Q ss_pred hhhhccCeEEEecc-cC----CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFP-TR----FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP-~y----~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
++..++|.|||... -+ ...-.+.+..|+.+.. -++|.++.++++
T Consensus 65 ~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 113 (195)
T cd03138 65 ADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQH-------ANGATVAAACTG 113 (195)
T ss_pred cccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHH-------HcCCEEEEecHH
Confidence 35678999998542 11 1233566777777663 357777777664
No 355
>PRK10307 putative glycosyl transferase; Provisional
Probab=34.12 E-value=69 Score=26.99 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=26.5
Q ss_pred eEEEEEe--cC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYY--SM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~--S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+||.. .+ .|.++.....+++.|.+. |++|+++-..
T Consensus 2 kIlii~~~~~P~~~g~~~~~~~l~~~L~~~-G~~V~vit~~ 41 (412)
T PRK10307 2 KILVYGINYAPELTGIGKYTGEMAEWLAAR-GHEVRVITAP 41 (412)
T ss_pred eEEEEecCCCCCccchhhhHHHHHHHHHHC-CCeEEEEecC
Confidence 8999973 34 355555667788888874 8999988654
No 356
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=34.04 E-value=1.9e+02 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=23.1
Q ss_pred CCceEEEEEecC-cch-HHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 1 MATKVYIVYYSM-YGH-VEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 1 mm~kilIiy~S~-~G~-T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||++.-|.+-|- +|- .+.+++++...+. +++++....+..
T Consensus 1 ~~~~~~i~~VSDstGeTAe~v~~A~l~QF~---~~~~~~~~~p~v 42 (269)
T PRK05339 1 MMMKRHVFLVSDSTGETAETVGRAALSQFP---NVEFEEHRYPFV 42 (269)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHHHhCC---CCCeeEEEeCCc
Confidence 554444444453 564 5677777888884 556665555443
No 357
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.03 E-value=72 Score=22.67 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=23.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||-.++||.+| ..+|+-+.+.+++..+ +|.+....-
T Consensus 1 ~~vgiVIVSHS-----~~lAeGv~~li~em~~-dv~i~~~gG 36 (129)
T COG3412 1 MMVGIVIVSHS-----KELAEGVAELIREMAG-DVPITYAGG 36 (129)
T ss_pred CcceEEEEeCC-----HHHHHHHHHHHHHHhC-CCceEEecC
Confidence 56678888877 4566666666655434 666666554
No 358
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=34.03 E-value=1.3e+02 Score=21.70 Aligned_cols=47 Identities=2% Similarity=-0.011 Sum_probs=31.4
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+..+|++|+....-...-...+..|++.+... ....+.|+.++++-
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~iiv~nK 118 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQH---SLPNEVPRILVGNK 118 (170)
T ss_pred hhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 467889999987776655555667777665321 12357888888874
No 359
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.91 E-value=2.6e+02 Score=22.84 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++++++.
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 71 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERV-GMDSDLHTLQEN 71 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 566666665556677777777888774 999999999865
No 360
>PRK06893 DNA replication initiation factor; Validated
Probab=33.74 E-value=2.2e+02 Score=21.99 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=23.8
Q ss_pred EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
.+++||.+ +|.|. ++++++..+.+. +..+.++.+.
T Consensus 41 ~l~l~G~~G~GKTh-L~~ai~~~~~~~-~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSH-LLKAVSNHYLLN-QRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHHc-CCCeEEeeHH
Confidence 46778776 68887 577777666542 5567777765
No 361
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=33.49 E-value=1.1e+02 Score=21.96 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=26.2
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-+.++|++|+..-.-...-...++.++..+. ....+.++|+.++++-
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~---~~~~~~~~piilv~NK 110 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERIGEAREELQRML---NEDELRDAVLLVFANK 110 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHH---hcHHhcCCCEEEEEEC
Confidence 4689999999866543221222333333331 1123456888887764
No 362
>PRK06223 malate dehydrogenase; Reviewed
Probab=33.27 E-value=2.6e+02 Score=22.62 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=34.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhH-hhhcCCC-CC--C-CC-CCCChhhhhccCeEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDV-LGKMGAG-PK--S-DV-PTITPNELAEADGIL 75 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~-~~~~~~~-~~--~-~~-~~~~~~~l~~aD~ii 75 (203)
|+||.||-+..-|.+ +|..++.. . .+ ++.++|+.+...... ....... .. . .. .....+++.+||.||
T Consensus 2 ~~KI~VIGaG~vG~~--ia~~la~~--~-~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVi 75 (307)
T PRK06223 2 RKKISIIGAGNVGAT--LAHLLALK--E-LG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVV 75 (307)
T ss_pred CCEEEEECCCHHHHH--HHHHHHhC--C-Ce-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEE
Confidence 359988765323433 44444321 0 13 899999855322111 1100110 00 0 00 011356799999999
Q ss_pred Eec
Q 028847 76 LGF 78 (203)
Q Consensus 76 igs 78 (203)
+..
T Consensus 76 i~~ 78 (307)
T PRK06223 76 ITA 78 (307)
T ss_pred ECC
Confidence 874
No 363
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=33.14 E-value=1.3e+02 Score=19.08 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=24.7
Q ss_pred EEEEecC-cchHHHHHHHHHHHhhcc--CCceEEEEEcCC
Q 028847 6 YIVYYSM-YGHVEKLAEEIQKGAASV--EGVEAKLWQVPE 42 (203)
Q Consensus 6 lIiy~S~-~G~T~~la~~i~~~l~~~--~g~~v~~~~l~~ 42 (203)
|-+|-+. +.++.+..+.+.+.+++. ..++.+++|+.+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~ 43 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK 43 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc
Confidence 4455454 467777777776666552 466889999876
No 364
>TIGR00035 asp_race aspartate racemase.
Probab=33.11 E-value=2.2e+02 Score=22.12 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=60.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCc-eEEEEEcCCCCchhHhhhcCCCCCCCC-CCC--Chhhh--hccCeEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDVLGKMGAGPKSDV-PTI--TPNEL--AEADGIL 75 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l--~~aD~ii 75 (203)
|+++-||-|-..-.|...-+.|.+......+- ....+=+....+++..........++. +.. ....+ ..+|.|+
T Consensus 1 m~~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 1 ENMIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFII 80 (229)
T ss_pred CCeEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEE
Confidence 56676766555555666666666555432111 222333333333333222111111110 100 12233 3589999
Q ss_pred EecccCCCCcHHHHHHHHHHhcccc-------cccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 76 LGFPTRFGMMAAQFKAFLDATGGLW-------RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 76 igsP~y~~~~~~~lk~fld~~~~~~-------~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
+++=+=..- -..++..++ +.-+. .-.....|++++++|.+....+ .+.+.+...|+.++.
T Consensus 81 iaCNTah~~-~~~l~~~~~-iPii~i~~~~~~~~~~~~~~~VgvLaT~~T~~s~------~y~~~l~~~g~~v~~ 147 (229)
T TIGR00035 81 MPCNTAHKF-AEDIQKAIG-IPLISMIEETAEAVKEDGVKKAGLLGTKGTMKDG------VYEREMKKHGIEIVT 147 (229)
T ss_pred ECCccHHHH-HHHHHHhCC-CCEechHHHHHHHHHHcCCCEEEEEecHHHHHhH------HHHHHHHHCCCEEEC
Confidence 997551111 122332111 10000 0012346899999887663222 144677777887763
No 365
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.01 E-value=1.1e+02 Score=25.15 Aligned_cols=36 Identities=17% Similarity=-0.099 Sum_probs=27.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|++|.|++-...-....+++.+.+.+.+. |+++.+.
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~-g~~v~~~ 40 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSK-GYEVIVE 40 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHC-CCEEEEe
Confidence 45799988777777888899999988774 7776553
No 366
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=32.93 E-value=50 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=18.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHH
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQK 25 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~ 25 (203)
||.|+.+|-|+.+|---.++..+.+
T Consensus 1 ~~RKvalITGanSglGl~i~~RLl~ 25 (341)
T KOG1478|consen 1 MMRKVALITGANSGLGLAICKRLLA 25 (341)
T ss_pred CCceEEEEecCCCcccHHHHHHHHh
Confidence 7889999999988755555554443
No 367
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=32.85 E-value=1.3e+02 Score=21.32 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=29.4
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.-+..+|++|+........-...+..|.+.+..........++|+.++++-
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 456789999999876554333444555554321101112347888888764
No 368
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=32.79 E-value=82 Score=22.15 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.2
Q ss_pred CcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 12 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 12 ~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
..|-.++.+..+++.+.+. |.++.++-...
T Consensus 10 ~~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKR-GHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHT-T-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHHC-CCEEEEEEcCC
Confidence 3688899999999999884 99999986554
No 369
>PRK14866 hypothetical protein; Provisional
Probab=32.55 E-value=1.2e+02 Score=26.67 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=19.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHh
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGA 27 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l 27 (203)
+++||+....--+..+++.+.+.+
T Consensus 2 ~~~iv~S~~DpAS~ni~~~L~~l~ 25 (451)
T PRK14866 2 MIAIVVSRADPASVHIREHLLELL 25 (451)
T ss_pred eEEEEEeCCCchhhhHHHHHHHhc
Confidence 488888777777888999998865
No 370
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=32.53 E-value=2.8e+02 Score=23.28 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=21.4
Q ss_pred ceEEEEEecC-cch-HHHHHHHHHHHhhccCCceEEEEEc
Q 028847 3 TKVYIVYYSM-YGH-VEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~-~G~-T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
+|+.|||.+. .|. ....++.+.+.+++ .|+++.....
T Consensus 138 ~~vaiiy~~~~~~~~~~~~~~~l~~~~~~-~gi~v~~~~~ 176 (387)
T cd06386 138 RSALLVYEDDKQERNCYFTLEGVHHVFQE-EGYHMSIYPF 176 (387)
T ss_pred eEEEEEEEcCCCCccceehHHHHHHHHHh-cCceEEEEec
Confidence 4678887543 232 12236677777776 3777766543
No 371
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=32.47 E-value=2.1e+02 Score=21.17 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=49.4
Q ss_pred ceEEEEE-ecC----cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 3 TKVYIVY-YSM----YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 3 ~kilIiy-~S~----~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
++++|+- |.. .|.--.+|+.+++..... . .++++|.....+.. ...+..+|.+||.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~-~-~v~vid~Gt~~~~l-----------------~~~l~~~d~vIIV 62 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPP-E-NVEVIDGGTAGPNL-----------------LGLLAGYDPVIIV 62 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCC-C-CeEEEEcCCCcHHH-----------------HHHhcCCCcEEEE
Confidence 3677764 443 477889999999888653 2 68899988754432 3578888999998
Q ss_pred cccCCCCcHHHHH
Q 028847 78 FPTRFGMMAAQFK 90 (203)
Q Consensus 78 sP~y~~~~~~~lk 90 (203)
=-+-++.=|+.++
T Consensus 63 Dav~~g~epG~v~ 75 (160)
T COG0680 63 DAVLFGLEPGEVR 75 (160)
T ss_pred EeeecCCCCceEE
Confidence 8777776676554
No 372
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.41 E-value=1.4e+02 Score=21.14 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=31.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCc
Q 028847 73 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 139 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~ 139 (203)
.||+|.+.+....++.++.=++.-..++. ++..--++.|+|...+........+.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 57889999876666444444443322221 2333344455554332112223456667776664
No 373
>PHA01633 putative glycosyl transferase group 1
Probab=32.40 E-value=2.3e+02 Score=23.65 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=45.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|.+|+- -.++.-+.+++.|++.+++ .| ++..+--.. -.+-.+|.+|+-.|-
T Consensus 2 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--- 52 (335)
T PHA01633 2 KTAILT-MNYSSISNVSEDIAEVLRE-NG-EIVTITKNP-----------------------FYIPKAEKLIVFIPF--- 52 (335)
T ss_pred ceEEEE-echhhhhhHHHHHHHHHHh-CC-cEEEEecCC-----------------------cccCccceEEEEeec---
Confidence 444442 1244567788999999987 35 332221111 134566888887774
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.|+.+.+++-..+ .|+|.+- +++|+.+
T Consensus 53 -~~~~~~~~~~~~~------~~~~~~~-~~tt~~g 79 (335)
T PHA01633 53 -HPPSLNPYLYAYY------QFKGKKY-FYTTCDG 79 (335)
T ss_pred -CCcccchHHhhhh------hhcCCCc-eEEeeCC
Confidence 4777888876654 5666544 3455443
No 374
>PRK07952 DNA replication protein DnaC; Validated
Probab=32.37 E-value=1.1e+02 Score=24.23 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=39.4
Q ss_pred EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCC-CCChhhhhccCeEEEecccC
Q 028847 5 VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVP-TITPNELAEADGILLGFPTR 81 (203)
Q Consensus 5 ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~iiigsP~y 81 (203)
.++++|.+ +|.|. ++.+|+..+.+ .|..|-++++.+... .+... .. ..+.. ......+..+|.|||=-.-.
T Consensus 101 ~~~l~G~~GtGKTh-La~aia~~l~~-~g~~v~~it~~~l~~-~l~~~-~~--~~~~~~~~~l~~l~~~dlLvIDDig~ 173 (244)
T PRK07952 101 SFIFSGKPGTGKNH-LAAAICNELLL-RGKSVLIITVADIMS-AMKDT-FS--NSETSEEQLLNDLSNVDLLVIDEIGV 173 (244)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEEHHHHHH-HHHHH-Hh--hccccHHHHHHHhccCCEEEEeCCCC
Confidence 56788775 78888 45566666655 377887777655311 01000 00 00110 01245678999999865433
No 375
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.25 E-value=66 Score=26.02 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.2
Q ss_pred eEEEEEe--c--CcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYY--S--MYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~--S--~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+||.. . ..|-++..+..+++.+.+. |++|.++-...
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~-g~~v~v~~~~~ 42 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVAR-GHEVTVYCRSP 42 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhc-CCCEEEEEccC
Confidence 5777733 2 3688899999999999984 89999887654
No 376
>PLN00223 ADP-ribosylation factor; Provisional
Probab=32.21 E-value=90 Score=23.08 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=27.2
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-+.++|++|+..-.-...--...+.++.++. ....+.+.++.+++.-
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l---~~~~~~~~piilv~NK 127 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANK 127 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHh---cCHhhCCCCEEEEEEC
Confidence 4688999999866543221222334444331 1124567889888874
No 377
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.21 E-value=2.8e+02 Score=22.61 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=28.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++.+.+++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSL-GIDFKKIKLDES 72 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 566666565556666777777777774 999999998754
No 378
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=32.16 E-value=1.2e+02 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=27.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++|.++|.+...++....+.+.+.+++ .|+++..+.+.+
T Consensus 132 k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~v~~ 170 (294)
T PF04392_consen 132 KRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIPVPS 170 (294)
T ss_dssp -EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEEESS
T ss_pred CEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 578889988777777788888887777 488877777665
No 379
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=32.06 E-value=1.7e+02 Score=22.46 Aligned_cols=14 Identities=43% Similarity=0.413 Sum_probs=12.3
Q ss_pred hhhhhccCeEEEec
Q 028847 65 PNELAEADGILLGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.+||+|+|.-
T Consensus 75 ~~~l~~ad~I~l~G 88 (212)
T cd03146 75 LDALLEADVIYVGG 88 (212)
T ss_pred HHHHhcCCEEEECC
Confidence 56899999999986
No 380
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=32.03 E-value=3.9e+02 Score=24.81 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=40.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEG--VEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
.+||.|| |. | .|...++..+.+. | .+|..+|........... .+.. +.......+.+.++|.||+++|
T Consensus 3 ~~~I~II-G~--G---~mG~ala~~l~~~-G~~~~V~~~d~~~~~~~~a~~-~g~~--~~~~~~~~~~~~~aDvVilavp 72 (735)
T PRK14806 3 FGRVVVI-GL--G---LIGGSFAKALRER-GLAREVVAVDRRAKSLELAVS-LGVI--DRGEEDLAEAVSGADVIVLAVP 72 (735)
T ss_pred CcEEEEE-ee--C---HHHHHHHHHHHhc-CCCCEEEEEECChhHHHHHHH-CCCC--CcccCCHHHHhcCCCEEEECCC
Confidence 3566665 43 3 2455555555542 5 367777665422111111 1111 0000011234779999999999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 028847 80 TRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~ 97 (203)
. ..+..+++.+.
T Consensus 73 ~------~~~~~vl~~l~ 84 (735)
T PRK14806 73 V------LAMEKVLADLK 84 (735)
T ss_pred H------HHHHHHHHHHH
Confidence 6 34566666653
No 381
>PRK15456 universal stress protein UspG; Provisional
Probab=31.90 E-value=1.2e+02 Score=21.19 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=25.2
Q ss_pred CCceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+|||+-+ +|...++.++++...+..+. +.++.++.+-+
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~--~~~l~llhv~~ 41 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD--DGVIHLLHVLP 41 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc--CCeEEEEEEec
Confidence 788988765 55434667777766655443 33677776653
No 382
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=31.84 E-value=1.2e+02 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=29.5
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||.|++|-.+. -+-+=++.+.+.|.+ .+.++..+++..
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~ 45 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITK 45 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECC
Confidence 589999987643 355566778888877 488999888875
No 383
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=31.79 E-value=1.8e+02 Score=21.55 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=27.8
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCc---eEEEEEcCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGV---EAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~---~v~~~~l~~ 42 (203)
|++||.+-.+. -|..|.+-..+.+.+. |+ +++++.++-
T Consensus 12 riaIV~srfn~~It~~Ll~gA~~~l~~~-G~~~~~i~v~~VPG 53 (158)
T PRK12419 12 RIAFIQARWHADIVDQARKGFVAEIAAR-GGAASQVDIFDVPG 53 (158)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHc-CCCccceEEEECCc
Confidence 78888866554 4899999888888874 64 466776664
No 384
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=31.61 E-value=1.1e+02 Score=25.75 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=16.7
Q ss_pred CCCCChhhhhccCeEEEecccC
Q 028847 60 VPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 60 ~~~~~~~~l~~aD~iiigsP~y 81 (203)
.|+...+.+.++|++++|+-.+
T Consensus 55 lpeetl~~~~~~DaiL~Gavg~ 76 (348)
T COG0473 55 LPEETLESLKKADAILFGAVGG 76 (348)
T ss_pred CCHHHHHHHHhCCEEEEcccCC
Confidence 4555678899999999986553
No 385
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=31.32 E-value=2.1e+02 Score=20.95 Aligned_cols=45 Identities=4% Similarity=-0.112 Sum_probs=28.9
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+..+|++|+....-...--..++.|++.+.. .-.+.++.++++-
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~-----~~~~~piilv~nK 114 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-----LEEHCKIYLCGTK 114 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHh-----cCCCCCEEEEEEc
Confidence 45689999999876443323345667777642 2246788877774
No 386
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=31.26 E-value=2.7e+02 Score=22.18 Aligned_cols=58 Identities=9% Similarity=-0.005 Sum_probs=30.0
Q ss_pred hhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEE
Q 028847 68 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 68 l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
+.+.|.|++++|. .....+..... -.||.+.+..++.- . .......+.+...+.|..+
T Consensus 59 l~~~DvVvi~a~~------~~~~~~~~~al-------~~Gk~Vvv~s~gAl-~--d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 59 VEDVDLVVECASV------NAVEEVVPKSL-------ENGKDVIIMSVGAL-A--DKELFLKLYKLAKENNCKI 116 (265)
T ss_pred hcCCCEEEEcCCh------HHHHHHHHHHH-------HcCCCEEEEchHHh-c--CHHHHHHHHHHHHHcCCEE
Confidence 3789999999874 33334433331 14777765433221 1 1111344556666666554
No 387
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=31.25 E-value=1.4e+02 Score=22.41 Aligned_cols=48 Identities=19% Similarity=0.058 Sum_probs=32.3
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCC
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 121 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~ 121 (203)
...-+.||.+++.-|+ ..++.+.++...|.. -.-|.+..++++..++|
T Consensus 65 ~aSPRhADvLlVtG~v-T~km~~~l~~~yeqm--------PePK~VIA~G~CA~sGG 112 (173)
T PRK14818 65 RASPRQADFMIVAGTL-TYKMAERARLLYDQM--------PEPKYVISMGSCSNCGG 112 (173)
T ss_pred cCCcccccEEEEeCcC-ccccHHHHHHHHHhC--------CCCCEEEEeccccccCC
Confidence 3467899999998887 444555566666654 35677777877765443
No 388
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.19 E-value=2.3e+02 Score=21.57 Aligned_cols=14 Identities=50% Similarity=0.657 Sum_probs=12.1
Q ss_pred hhhhhccCeEEEec
Q 028847 65 PNELAEADGILLGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.++|+|+|+-
T Consensus 75 ~~~l~~ad~I~~~G 88 (210)
T cd03129 75 VARLLEADGIFVGG 88 (210)
T ss_pred HHHHhhCCEEEEcC
Confidence 56899999999985
No 389
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=30.96 E-value=1.8e+02 Score=21.06 Aligned_cols=49 Identities=6% Similarity=0.056 Sum_probs=32.0
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++||..-+-...-...++.|++.+... ..-.+.|+.++++-
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~---~~~~~~piilvgNK 116 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRV---RLTEDIPLVLVGNK 116 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 34577899999997776655555566676655321 12356788888764
No 390
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=30.91 E-value=2e+02 Score=20.46 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=29.2
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...--..+..|++.+... ...+.++.++++-
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK 116 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNK 116 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 34578999999997775533334456666655311 2245677777663
No 391
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=30.79 E-value=2.3e+02 Score=21.09 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=22.9
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~ 119 (203)
|..++-..+++++..+.- .++.||=.+++++.+.
T Consensus 70 ~~~~~~~~l~~~~~~~~i-----l~r~rPdvii~nGpg~ 103 (170)
T PF08660_consen 70 YLTSIFTTLRAFLQSLRI-----LRRERPDVIISNGPGT 103 (170)
T ss_pred hHhhHHHHHHHHHHHHHH-----HHHhCCCEEEEcCCce
Confidence 455667777888877642 2456788888777653
No 392
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=30.78 E-value=1.3e+02 Score=21.18 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=22.8
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
+.||+.++ +.+++..+.+. + .|++++++|+.+.++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~----~-~gi~~~~~d~~~~p~ 38 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK----A-SGHDVEVQDILKEPW 38 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH----H-CCCCcEEEeccCCCc
Confidence 45788875 45555444443 3 489999999987544
No 393
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=30.62 E-value=1.1e+02 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=20.9
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCc
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGV 33 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~ 33 (203)
|++|.|+.+|. +....+.|..+.+.+.+. |+
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~-g~ 32 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKK-GH 32 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHC-CC
Confidence 45788776664 345677788888888763 64
No 394
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=30.44 E-value=3.6e+02 Score=23.35 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=59.6
Q ss_pred eEEEEEecCc-------chHHHHHHHHHHHhhccCCceEEEEEcCCCC--chhHhhhcCCCCCCCCCCCChhhh--hccC
Q 028847 4 KVYIVYYSMY-------GHVEKLAEEIQKGAASVEGVEAKLWQVPETL--SEDVLGKMGAGPKSDVPTITPNEL--AEAD 72 (203)
Q Consensus 4 kilIiy~S~~-------G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l--~~aD 72 (203)
||-++.+|.. ...+..++.+.+.+++. ++ ++++..... .+....+ .+++ .+.|
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~--~vv~~~~~~~~~~~~~~~-------------~~~~~~~~~d 65 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL-PV--EVVDKPEVTGTPDEARKA-------------AEEFNEANCD 65 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcC-Cc--eEEecCcccCCHHHHHHH-------------HHHHhhcCCc
Confidence 6777777764 24566677777777663 44 555554432 1111111 1112 3689
Q ss_pred eEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC--------CCchhHHHHHHHHHHHcCcEE
Q 028847 73 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG--------GGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~--------~~~~~~~~~~~~~l~~~g~~~ 141 (203)
+||+..++|..+ +.++..+. . -++|+.++++..... .+.. ....+...|.+.|...
T Consensus 66 ~ii~~~~tf~~~-----~~~~~~~~------~-~~~Pvll~a~~~~~~~~~~~~~~~s~~-g~~~~~~~l~r~gi~~ 129 (452)
T cd00578 66 GLIVWMHTFGPA-----KMWIAGLS------E-LRKPVLLLATQFNREIPDFMNLNQSAC-GLREFGNILARLGIPF 129 (452)
T ss_pred EEEEcccccccH-----HHHHHHHH------h-cCCCEEEEeCCCCCCCCchhhhhcchh-hhHHHHHHHHHcCCce
Confidence 999988888654 33333332 2 378998888765311 1111 2344556666666543
No 395
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=30.43 E-value=2.4e+02 Score=25.68 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=47.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
+++++|-+..-.+..+...+.+.+... -++++.+|+.+..- .....+..++.|||.++-...
T Consensus 55 ~l~~l~d~~~~~s~~~~~n~~kil~~~-K~~~~~id~~~~~~-----------------~~~p~l~~Y~~vII~~~~l~~ 116 (585)
T PF09960_consen 55 KLLILYDSNGELSMDIKENFKKILEYM-KIPYDTIDIAEFIK-----------------SSIPSLSDYRGVIILTTDLDP 116 (585)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHHh-ccccEeeecccccc-----------------ccCCcccceeEEEEEeccccc
Confidence 456677776556777778888888763 45677777763210 013467789988887777632
Q ss_pred CcHHHHHHHHHHh
Q 028847 84 MMAAQFKAFLDAT 96 (203)
Q Consensus 84 ~~~~~lk~fld~~ 96 (203)
=-...+++|+..=
T Consensus 117 l~~~~i~~yV~~G 129 (585)
T PF09960_consen 117 LGNEAIMNYVENG 129 (585)
T ss_pred cChHHHHHHHHcC
Confidence 2226667666653
No 396
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.37 E-value=2.4e+02 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=11.7
Q ss_pred CceEEEEEecCcchHHHHHHHHH
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQ 24 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~ 24 (203)
+++..+|-|-.+|--+.+|+.++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA 27 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLA 27 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHH
Confidence 34555566555554444444443
No 397
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=30.26 E-value=1.1e+02 Score=23.31 Aligned_cols=12 Identities=58% Similarity=0.902 Sum_probs=9.4
Q ss_pred hhhccCeEEEec
Q 028847 67 ELAEADGILLGF 78 (203)
Q Consensus 67 ~l~~aD~iiigs 78 (203)
.+.++|+|||..
T Consensus 37 ~l~~~D~lilPG 48 (198)
T cd03130 37 ELPDADGLYLGG 48 (198)
T ss_pred CCCCCCEEEECC
Confidence 345699999987
No 398
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=30.00 E-value=1.8e+02 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=25.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+-+.+++.+...+.+|+.|++.+++. |+++++..+.
T Consensus 405 l~l~~~~~~~~~~~~A~~iq~~l~~~-GI~v~i~~~~ 440 (552)
T PRK13626 405 LTLTFYQDHSEHRVIAGIMQQLLASH-GVTLEIQEID 440 (552)
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHh-CcEEEEEEee
Confidence 33444444456788999999999985 9998875443
No 399
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=29.96 E-value=1.5e+02 Score=24.80 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=37.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe---
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG--- 77 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig--- 77 (203)
|-.||.+|-|= |--..+..+..+.++.. +.++++..+. ..-. ... ...+..|+...+.++++|++++|
T Consensus 1 ~~~~I~vipGD--GIGpEV~~~a~~vl~~~-~~~~~~~~~~-~G~~-~~~----~~G~~lp~~~l~~~~~~da~L~Gavg 71 (334)
T PRK08997 1 MKQTITVIPGD--GIGPSIIDATLKILDKL-GCDFEYEFAD-AGLT-ALE----KHGELLPQRTLDLIEKNKIALKGPLT 71 (334)
T ss_pred CCcEEEEECCC--cccHHHHHHHHHHHHhc-CCCeEEEEEc-CCHH-HHH----hhCCCCCHHHHHHHHHCCEEEECccc
Confidence 43367777654 33344555555555432 3344444432 1100 011 01123444457889999999988
Q ss_pred cccCC
Q 028847 78 FPTRF 82 (203)
Q Consensus 78 sP~y~ 82 (203)
+|.|.
T Consensus 72 ~p~~~ 76 (334)
T PRK08997 72 TPVGE 76 (334)
T ss_pred CCCCc
Confidence 56554
No 400
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=29.86 E-value=2e+02 Score=20.16 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=30.1
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...-...+..|++.+... ....+.++.++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~~~~iv~nK 115 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETY---STNNDIVKMLVGNK 115 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHh---CCCCCCcEEEEEEC
Confidence 34567899999997765433334455566655321 13457777877764
No 401
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=29.83 E-value=2.7e+02 Score=23.13 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=24.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
+.||.+ |..-..+...++.+.+ .|++++++|+....|
T Consensus 203 vTivty---g~mv~~al~AAe~l~~-~Gis~EVIDLRTl~P 239 (324)
T COG0022 203 VTIVTY---GAMVHTALEAAEELEK-EGISAEVIDLRTLSP 239 (324)
T ss_pred eEEEEe---chHHHHHHHHHHHHhh-cCCCeEEEeccccCc
Confidence 445543 3444555566666766 499999999998654
No 402
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=29.60 E-value=63 Score=27.83 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=42.8
Q ss_pred CCCCCChhhhhccCeEEEecccCCC---------CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 59 DVPTITPNELAEADGILLGFPTRFG---------MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 59 ~~~~~~~~~l~~aD~iiigsP~y~~---------~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
..|. ..+++..+.-|.=-.|=|.- .+|...++|++++. .+-|.|+.+++|+-.
T Consensus 357 ~~P~-~~~~~~~~~PiYe~~pGW~~~~~g~~~~~~LP~~A~~Yi~~iE------E~~gvPV~iistGP~ 418 (430)
T COG0104 357 YFPA-DLDDLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYIKRIE------ELVGVPVTIISTGPE 418 (430)
T ss_pred eccc-chhhhhcCceeeeccCCCccccccccchHHcCHHHHHHHHHHH------HHHCCCEEEEecCCC
Confidence 3343 46788899999888888865 35899999999995 788999999988755
No 403
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=29.50 E-value=2.4e+02 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcccccccCCCCCeEEEEEccCCCCC
Q 028847 87 AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 121 (203)
Q Consensus 87 ~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~ 121 (203)
..+..|++++... .-+||++++.-.+-..|+
T Consensus 329 ~~~~~f~~~I~~~----l~~G~~VaiaDva~~NGa 359 (497)
T PF13552_consen 329 RNLREFVDRIEEY----LAKGKPVAIADVAYANGA 359 (497)
T ss_pred ccHHHHHHHHHHH----HHcCCcEEEEEcCcCCCc
Confidence 4667777777532 335999999887755443
No 404
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.27 E-value=1.4e+02 Score=24.37 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=32.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|. .+.+-++..|.. .|+.|.+.+-...+ ..+.+.+||.||.+++.
T Consensus 159 k~vvVIGrs~-----~VG~pla~lL~~-~gatVtv~~s~t~~-------------------l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 159 KNAVVIGRSH-----IVGQPVSKLLLQ-KNASVTILHSRSKD-------------------MASYLKDADVIVSAVGK 211 (286)
T ss_pred CEEEEECCCc-----hhHHHHHHHHHH-CCCeEEEEeCCchh-------------------HHHHHhhCCEEEECCCC
Confidence 4677776665 223333333333 26677777643211 23578999999999988
No 405
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=29.25 E-value=53 Score=25.31 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCceEEEEEecCc-------c-------hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChh
Q 028847 1 MATKVYIVYYSMY-------G-------HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPN 66 (203)
Q Consensus 1 mm~kilIiy~S~~-------G-------~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
|.+|||.|--|.. | .-+.=|+.+.+.|+. .+++++.....+... .+|+ ..+
T Consensus 1 ~~~KvL~iGESW~~~~~H~KGfDqF~s~~y~~GAd~Ll~~Lr~-g~~dv~yMpAH~~q~-------------~FPq-tme 65 (254)
T COG5426 1 MTKKVLLIGESWVSHATHSKGFDQFTSVTYHEGADPLLKALRG-GEYDVTYMPAHDAQE-------------KFPQ-TME 65 (254)
T ss_pred CceeEEEecceeeeeeeeccccccCcceecccCchHHHHHHhC-CCcceEEechHHHHH-------------hcch-hhh
Confidence 4468888765521 1 123346777888877 466776655443221 1122 356
Q ss_pred hhhccCeEEEe
Q 028847 67 ELAEADGILLG 77 (203)
Q Consensus 67 ~l~~aD~iiig 77 (203)
.+..||+|||.
T Consensus 66 ~L~~YDaivlS 76 (254)
T COG5426 66 GLDAYDAIVLS 76 (254)
T ss_pred hhcccceEEEe
Confidence 88899999875
No 406
>PRK12361 hypothetical protein; Provisional
Probab=29.22 E-value=2.8e+02 Score=24.77 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=26.4
Q ss_pred CCceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++|+++|+-.. .|...+..+.+.+.+++ +.+++++....
T Consensus 241 ~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~--~~~~~v~~t~~ 282 (547)
T PRK12361 241 IHKRAWLIANPVSGGGKWQEYGEQIQRELKA--YFDLTVKLTTP 282 (547)
T ss_pred cCCceEEEECCCCCCCcHHHHHHHHHHHHhc--CCceEEEECCC
Confidence 345777777554 34577888899888876 35666655543
No 407
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.21 E-value=1.4e+02 Score=23.46 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=29.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+|+++.+|+--..++=.-.+++.+.+ .++.++++...+.
T Consensus 109 riVvFvGSpi~e~ekeLv~~akrlkk-~~Vaidii~FGE~ 147 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEKELVKLAKRLKK-NKVAIDIINFGEA 147 (259)
T ss_pred EEEEEecCcchhhHHHHHHHHHHHHh-cCeeEEEEEeccc
Confidence 78888999965556555566677766 4888999988764
No 408
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.11 E-value=3e+02 Score=22.34 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=24.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKL 37 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~ 37 (203)
+|+.+||.+.....+.+++.+.+.+++. |.++..
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~~-g~~v~~ 170 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQ-GLNLVT 170 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHHc-CCEEEE
Confidence 4778888765556678888888888874 766543
No 409
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=28.77 E-value=98 Score=21.90 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=32.5
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+.++|++|+....-...-...++.|+..+.. ...+.++.++++-
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK 116 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRT-----ASKHMPGVLVGNK 116 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 457889999999887655445667788877642 1246788887774
No 410
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.73 E-value=1e+02 Score=24.76 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=29.8
Q ss_pred eEEEEE--ecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVY--YSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy--~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|||+|. +++ .|..+.++..+++.+.+. |.+|+++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAAR-GIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhC-CCceEEEecCCC
Confidence 577775 344 577888888999999884 899999877653
No 411
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.72 E-value=99 Score=21.13 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEA 35 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v 35 (203)
+-++|..|.+|+|..+.+.+... ++ .|+.+
T Consensus 44 ~dl~I~iS~SG~t~e~i~~~~~a-~~-~g~~i 73 (119)
T cd05017 44 KTLVIAVSYSGNTEETLSAVEQA-KE-RGAKI 73 (119)
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-HH-CCCEE
Confidence 44677789999999988877654 44 26544
No 412
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=28.72 E-value=1.7e+02 Score=19.02 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHHHhhcc--CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASV--EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFK 90 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk 90 (203)
+.+++++.+.+....+.. ..++.+++|+.+. .++.+.+. |++||+---..|++.+
T Consensus 8 ~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~----------------------P~lAe~~~-ivAtPtLik~~P~P~r 64 (82)
T PF07689_consen 8 TPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ----------------------PELAEEDR-IVATPTLIKESPEPRR 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS----------------------HSHHTTTE-EECHHHHHTTSSHHHH
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC----------------------HhHHhHCC-eeecceEeeccCCCce
Confidence 444555555444433331 4568899999762 24555444 5789999888889999
Q ss_pred HHHHHhc
Q 028847 91 AFLDATG 97 (203)
Q Consensus 91 ~fld~~~ 97 (203)
.++-.++
T Consensus 65 rliGdls 71 (82)
T PF07689_consen 65 RLIGDLS 71 (82)
T ss_dssp HHHHHHH
T ss_pred EEeccCc
Confidence 9887664
No 413
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=28.62 E-value=1.1e+02 Score=22.07 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=17.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhh
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAA 28 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~ 28 (203)
||+|||.|...... -..||+.+.+.+.
T Consensus 1 ~~~~ILfVC~gN~c-RSpmAEa~~~~~~ 27 (144)
T PRK11391 1 KFNSILVVCTGNIC-RSPIGERLLRKRL 27 (144)
T ss_pred CCCeEEEEcCCcHh-HHHHHHHHHHHhc
Confidence 67799988844332 2347777776653
No 414
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=28.60 E-value=1.2e+02 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=17.0
Q ss_pred CCCCCChhhhhccCeEEEe---cccC
Q 028847 59 DVPTITPNELAEADGILLG---FPTR 81 (203)
Q Consensus 59 ~~~~~~~~~l~~aD~iiig---sP~y 81 (203)
..|+...+.++++|++++| +|.|
T Consensus 54 ~lp~~tl~~~~~~da~L~Gav~~p~~ 79 (358)
T PRK00772 54 PLPEETLEACRAADAVLLGAVGGPKW 79 (358)
T ss_pred CCCHHHHHHHHHCCEEEECccCCCCC
Confidence 3444467889999999997 5654
No 415
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.54 E-value=1.1e+02 Score=20.87 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=24.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+-++|..|.+|+|..+.+.+. .+++ .|+.+ +-+.+
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~-~ak~-~g~~v--i~iT~ 88 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLR-FAKE-RGAPV--ILITS 88 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHH-HHHH-TTSEE--EEEES
T ss_pred cceeEeeeccccchhhhhhhH-HHHh-cCCeE--EEEeC
Confidence 456777788999999999887 6666 37665 44443
No 416
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=28.54 E-value=2.3e+02 Score=20.44 Aligned_cols=45 Identities=16% Similarity=0.004 Sum_probs=26.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+.++|++|+....-...--..+..|++.+. ...+.|+.++++-
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~------~~~~~p~iiv~NK 117 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYF------MLGEIPCLFVAAK 117 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhc------cCCCCeEEEEEEc
Confidence 45689999999987633211112334444432 2246788877764
No 417
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=28.50 E-value=1.1e+02 Score=24.95 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=19.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhh
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAA 28 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~ 28 (203)
||.+|..+++|||.+ |..+++.+.
T Consensus 2 ki~aisD~RtGnt~Q-aiaLa~~l~ 25 (329)
T COG3660 2 KIWAISDGRTGNTHQ-AIALAEQLT 25 (329)
T ss_pred ceEEeecCCCccHHH-HHHHHHHhh
Confidence 899999999999987 455666665
No 418
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=28.44 E-value=1.4e+02 Score=22.09 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=21.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCc--eEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGV--EAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~--~v~~~~l~~ 42 (203)
|+++|.||.||.+- ....+..++.|++- |+ +++++....
T Consensus 1 ~~~~V~IIMGS~SD--~~~mk~Aa~~L~~f-gi~ye~~VvSAHR 41 (162)
T COG0041 1 MPPKVGIIMGSKSD--WDTMKKAAEILEEF-GVPYEVRVVSAHR 41 (162)
T ss_pred CCceEEEEecCcch--HHHHHHHHHHHHHc-CCCeEEEEEeccC
Confidence 34589999999753 22233333444432 55 455555544
No 419
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.42 E-value=3.3e+02 Score=22.27 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=29.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+..++. |++++++++++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 71 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEA-GMKSVLIELPEN 71 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 566666666666777788877888774 999999999865
No 420
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=28.41 E-value=1.3e+02 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=29.4
Q ss_pred ceEEEEEecCc---chHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMY---GHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~---G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+||.|++|-.+ --+.+=++.+.+.|++ .|.++..+++.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~ 44 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDAS 44 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 58999997653 3467778888888888 48898888765
No 421
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.37 E-value=3.7e+02 Score=23.51 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=20.0
Q ss_pred hhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 68 LAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 68 l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
..+||.+||-|-..-.+.-..+..-|.++.
T Consensus 38 ~~eADvviiNTC~V~~~a~~k~~~~i~~~~ 67 (437)
T COG0621 38 PEEADVVIINTCAVREKAEQKVRSAIGELK 67 (437)
T ss_pred cccCCEEEEecCeeeehHHHHHHHHHHHHH
Confidence 446788888877766666666666666654
No 422
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=28.27 E-value=88 Score=23.13 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=26.1
Q ss_pred hhhccCeEEEec-ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGF-PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigs-P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+..++|.|||.. +.....-.+.+..|+.+.. -++|.++.++++
T Consensus 61 ~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~-------~~~~~i~aic~g 104 (185)
T cd03136 61 DAPPLDYLFVVGGLGARRAVTPALLAWLRRAA-------RRGVALGGIDTG 104 (185)
T ss_pred ccCCCCEEEEeCCCCccccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 456789999843 2222334456777777652 357777776664
No 423
>PRK09273 hypothetical protein; Provisional
Probab=28.22 E-value=93 Score=24.24 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=27.7
Q ss_pred eEEEEEec-CcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYS-MYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S-~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||.+|..+ ....+..+.+.+.+.+++. |.+ ++|+..
T Consensus 2 kiali~e~sqa~kn~~i~~~L~~~L~~~-G~e--V~D~G~ 38 (211)
T PRK09273 2 KIALINENSQAAKNAIIYEALKKVADPK-GHE--VFNYGM 38 (211)
T ss_pred eEEeecccchhhhhHHHHHHHHHHHHHC-CCE--EEEeCC
Confidence 88888754 5677888999999999884 754 577764
No 424
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=28.06 E-value=49 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=36.6
Q ss_pred hccCeEEEecccCCC-CcHHHHHH---HHHHh--cccc-cccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEE
Q 028847 69 AEADGILLGFPTRFG-MMAAQFKA---FLDAT--GGLW-RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 69 ~~aD~iiigsP~y~~-~~~~~lk~---fld~~--~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
..+|.||++|--|.- .+|. +.. |-.++ +.-| ....++||+|++++++.+ ..++...|...|..+
T Consensus 131 ~~a~~vV~ATG~~~~P~iP~-~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS--------A~di~~~l~~~ga~v 201 (443)
T COG2072 131 LTADFVVVATGHLSEPYIPD-FAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGAS--------AVDIAPELAEVGASV 201 (443)
T ss_pred EecCEEEEeecCCCCCCCCC-CCCccCCCceEEchhcCCCccccCCCeEEEECCCcc--------HHHHHHHHHhcCCee
Confidence 459999999988743 3333 222 22221 1111 124799999999977654 123455666555444
No 425
>PLN02204 diacylglycerol kinase
Probab=27.97 E-value=2.8e+02 Score=25.33 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred CceEEEEE--ecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhh--hhccCeEEEe
Q 028847 2 ATKVYIVY--YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNE--LAEADGILLG 77 (203)
Q Consensus 2 m~kilIiy--~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~aD~iiig 77 (203)
+||++||+ .|..|+..+..+.++..+..+ +++++++--.......-+.. ...+ +..+|+||.+
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a-~i~~~v~~T~~aghA~d~~~------------~~~~~~l~~~D~VVaV 225 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRA-KVKTKVIVTERAGHAFDVMA------------SISNKELKSYDGVIAV 225 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHc-CCeEEEEEecCcchHHHHHH------------HHhhhhccCCCEEEEE
No 426
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.87 E-value=3.4e+02 Score=22.19 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=28.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++++++.
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 71 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRV-GIYSITHEMPST 71 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 455665555556677777777777774 999999998764
No 427
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=27.66 E-value=22 Score=23.82 Aligned_cols=43 Identities=19% Similarity=0.044 Sum_probs=25.7
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
..+.+.+||.|++.--++-. .+..+. ...++||++.++-.-+.
T Consensus 44 t~e~leWAdiIfVMEr~Hrq-------kL~krf-----~~~lk~kRviCLDIPDd 86 (109)
T COG4551 44 TREQLEWADIIFVMERVHRQ-------KLQKRF-----KASLKGKRVICLDIPDD 86 (109)
T ss_pred cHHHhhhhhhhhhHHHHHHH-------HHHHHh-----hHHhcCCeEEEEeCCch
Confidence 46789999998764332211 111222 13578999988766543
No 428
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=27.63 E-value=3.2e+02 Score=21.87 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=29.4
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||+++..+. .|-.+..+..+++.+.+ .|.++.++-....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDR-SKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCc-cceEEEEEEeCCC
Confidence 578777663 56777888888888887 4889988876553
No 429
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=27.54 E-value=1.5e+02 Score=20.08 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=21.8
Q ss_pred EEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 7 IVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 7 Iiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
.||+.++ +.+++.-+.+.+ .|++++++|+.+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~-----~~i~~~~~di~~~p~ 36 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-----RGVAYTFHDYRKDGL 36 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccCCC
Confidence 4677764 556654444433 488999999987544
No 430
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=27.51 E-value=59 Score=23.82 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=25.5
Q ss_pred hhccCeEEEeccc---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 68 LAEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 68 l~~aD~iiigsP~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|.|+|.... +...-.+.+..|+.+.. -++|+++.++++
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~~ic~G 105 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQE-------SKGKLVAAICAA 105 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHH-------HCCCEEEEEChh
Confidence 5679999986532 11122455777777663 357777766654
No 431
>PRK06851 hypothetical protein; Provisional
Probab=27.39 E-value=2e+02 Score=24.42 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=26.5
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+++.||.|.+ +|.|. +.+.+.+.+.+. |.+|+.+....
T Consensus 30 ~~~~il~G~pGtGKSt-l~~~i~~~~~~~-g~~Ve~~~~~~ 68 (367)
T PRK06851 30 NRIFILKGGPGTGKST-LMKKIGEEFLEK-GYDVEFLHCSS 68 (367)
T ss_pred ceEEEEECCCCCCHHH-HHHHHHHHHHHc-CCeEEEEEcCC
Confidence 5788999887 57666 455666666653 78888876543
No 432
>PRK06921 hypothetical protein; Provisional
Probab=27.36 E-value=1.2e+02 Score=24.24 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=22.9
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+-++++|.+ +|-|. |+.+|+..+.+..|..|-++...
T Consensus 118 ~~l~l~G~~G~GKTh-La~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 118 NSIALLGQPGSGKTH-LLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CeEEEECCCCCcHHH-HHHHHHHHHhhhcCceEEEEEHH
Confidence 346778775 68888 45666666654126666666553
No 433
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=27.34 E-value=2.6e+02 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+.+++.+.......+++.|++.+++. |+++++..+.
T Consensus 325 l~l~~~~~~~~~~~~a~~i~~~l~~~-Gi~v~~~~~~ 360 (466)
T cd00995 325 LTLLYNSDGPTRKEIAEAIQAQLKEI-GIKVEIEPLD 360 (466)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-CceEEEEEec
Confidence 44555444335678999999999995 9998886653
No 434
>PHA02774 E1; Provisional
Probab=27.34 E-value=1.8e+02 Score=26.60 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=43.0
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc--c
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP--T 80 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP--~ 80 (203)
+-+++||-+ +|.|. ++..|.+.+. |.-+..++.... .....+.+++.+|+==+ .
T Consensus 435 nciv~~GPP~TGKS~-fa~sL~~~L~---G~vi~fvN~~s~-------------------FwLqpl~d~ki~vlDD~t~~ 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSM-FCMSLIKFLK---GKVISFVNSKSH-------------------FWLQPLADAKIALLDDATHP 491 (613)
T ss_pred cEEEEECCCCCCHHH-HHHHHHHHhC---CCEEEEEECccc-------------------cccchhccCCEEEEecCcch
Confidence 467778877 68776 5667777773 434555665321 12456778888888433 3
Q ss_pred CCCCcHHHHHHHHHHh
Q 028847 81 RFGMMAAQFKAFLDAT 96 (203)
Q Consensus 81 y~~~~~~~lk~fld~~ 96 (203)
.|..+...||+.||--
T Consensus 492 ~w~y~d~~Lrn~LdG~ 507 (613)
T PHA02774 492 CWDYIDTYLRNALDGN 507 (613)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3445556677777654
No 435
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.29 E-value=1.3e+02 Score=24.53 Aligned_cols=35 Identities=23% Similarity=0.058 Sum_probs=26.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|+||.|++-... ....+++.+.+.+.+ .|+++.+.
T Consensus 10 ~~~i~ii~~~~~-~~~~~~~~i~~~l~~-~g~~~~~~ 44 (287)
T PRK14077 10 IKKIGLVTRPNV-SLDKEILKLQKILSI-YKVEILLE 44 (287)
T ss_pred CCEEEEEeCCcH-HHHHHHHHHHHHHHH-CCCEEEEe
Confidence 557888876654 778889999988877 37776654
No 436
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=27.21 E-value=1.9e+02 Score=20.98 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=29.2
Q ss_pred ceEEEEEecCc-chHHHHHHHHHHHhhccCCce---EEEEEcCC
Q 028847 3 TKVYIVYYSMY-GHVEKLAEEIQKGAASVEGVE---AKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~---v~~~~l~~ 42 (203)
.|+.||.+..+ --|.+|.+-..+.+.+. |++ ++++.++-
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~-gv~~~~i~v~~VPG 50 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKRY-SVKEENIDVVWVPG 50 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHc-CCCccceEEEEcCc
Confidence 48999988765 45899999888888874 764 56666654
No 437
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.99 E-value=1.4e+02 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=26.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
||.|++-...-....+++.+.+.+++ .|+++.+.
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~ 35 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIE 35 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 79988877666788889999988877 48777654
No 438
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=26.85 E-value=2.5e+02 Score=20.36 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=26.3
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-+.++|++|+..-.-.-.--...+.++..+. ....+.+.++.++++=
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~---~~~~~~~~piilv~NK 123 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRML---NEDELRDAVILVFANK 123 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHh---hCHhhcCCcEEEEEeC
Confidence 3689999999755432211223344444432 1123467888888774
No 439
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=26.81 E-value=87 Score=20.85 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=25.4
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.+..+|++||..=.-...--..++.+++++.... ..-++-|+.++++
T Consensus 70 ~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~--~~~~~~piilv~n 116 (119)
T PF08477_consen 70 FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIR--KRDKNIPIILVGN 116 (119)
T ss_dssp HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHH--HHSSCSEEEEEEE
T ss_pred hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHH--ccCCCCCEEEEEe
Confidence 4899999999875443222223344444443211 1234577777765
No 440
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.11 E-value=2.5e+02 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.4
Q ss_pred hhhhccCeEEEeccc
Q 028847 66 NELAEADGILLGFPT 80 (203)
Q Consensus 66 ~~l~~aD~iiigsP~ 80 (203)
+.+.++|.||++.|.
T Consensus 59 e~~~~aDiIiLavkP 73 (272)
T PRK12491 59 EVANSADILILSIKP 73 (272)
T ss_pred HHHhhCCEEEEEeCh
Confidence 346799999999995
No 441
>PRK06455 riboflavin synthase; Provisional
Probab=26.05 E-value=2.7e+02 Score=20.54 Aligned_cols=96 Identities=10% Similarity=0.000 Sum_probs=52.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhhhhccCeEEE-e--
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASV-EGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAEADGILL-G-- 77 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii-g-- 77 (203)
+||.||...-+- ..|.+...+.|++. .+.+++++.++-.. ++..+.. ..+-..||+||- |
T Consensus 2 ~kigIV~s~fn~--~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakk-------------L~~~~~yDaVIaLG~V 66 (155)
T PRK06455 2 MKIGIADTTFAR--VDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKK-------------LIEEEGCDIVMALGMP 66 (155)
T ss_pred cEEEEEEEecch--HHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHH-------------HHhcCCCCEEEEecce
Confidence 599999876543 36677777777763 24567777776532 2211110 011135887763 3
Q ss_pred --cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC
Q 028847 78 --FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 120 (203)
Q Consensus 78 --sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
++.+.+-.....+..++-- ...++|++-+...-...
T Consensus 67 G~t~h~d~Va~~vS~GL~~ls-------L~t~~PVi~v~vhede~ 104 (155)
T PRK06455 67 GPTEKDKYCAHEASIGLIMAQ-------LMTNKHIIEVFVHEDEA 104 (155)
T ss_pred eccCcchhHHHHHHHHHHHHH-------hhhCCCEEEEEeccccc
Confidence 4444333333334444332 45789999888775443
No 442
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=26.00 E-value=1.2e+02 Score=20.95 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=13.9
Q ss_pred EEEecCcchHHHHHHHHHHHhhc
Q 028847 7 IVYYSMYGHVEKLAEEIQKGAAS 29 (203)
Q Consensus 7 Iiy~S~~G~T~~la~~i~~~l~~ 29 (203)
|+.+|. +..+|+.|++.+..
T Consensus 3 I~~g~~---~~~La~~ia~~L~~ 22 (116)
T PF13793_consen 3 IFSGSS---SQDLAERIAEALGI 22 (116)
T ss_dssp EEESSS---GHHHHHHHHHHTTS
T ss_pred EEECCC---CHHHHHHHHHHhCC
Confidence 445443 46789999999854
No 443
>PRK15453 phosphoribulokinase; Provisional
Probab=25.97 E-value=1.8e+02 Score=23.90 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCce--EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 1 MATK--VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 1 mm~k--ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
||+| ++.|-|++ .|.| .+++.+++.++. .++.+.+++..+++
T Consensus 1 Ms~k~piI~ItG~SGsGKT-Tva~~l~~if~~-~~~~~~vi~~D~yh 45 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTT-TVKRAFEKIFRR-ENINAAVVEGDSFH 45 (290)
T ss_pred CCCCCcEEEEECCCCCCHH-HHHHHHHHHHhh-cCCCeEEEeccccc
Confidence 5544 44555665 4544 468888888876 36667777766554
No 444
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=25.97 E-value=1.4e+02 Score=23.47 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=26.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||++|..+ .|........+.+.+.+ .|.+|.++.....
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 38 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRA-AGYEVHVVAPPGD 38 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHh-cCCeeEEEecCCC
Confidence 68888777 44445556667777766 3889988876543
No 445
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=25.93 E-value=2.7e+02 Score=20.42 Aligned_cols=48 Identities=25% Similarity=0.137 Sum_probs=29.9
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--...+.+++.+.. ...+.++++.++++-
T Consensus 80 ~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK 127 (184)
T smart00178 80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNK 127 (184)
T ss_pred HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeC
Confidence 356789999998766443222334556665431 124578888888874
No 446
>PLN00016 RNA-binding protein; Provisional
Probab=25.90 E-value=72 Score=26.73 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=23.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+||+|++ +..|-|-.+...+.+.|.+ .|.+|..+.-..
T Consensus 51 ~~~~VLVt~-~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVN-TNSGGHAFIGFYLAKELVK-AGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEe-ccCCCceeEhHHHHHHHHH-CCCEEEEEecCC
Confidence 456788762 3334444555555555555 377888776543
No 447
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.88 E-value=3.7e+02 Score=22.01 Aligned_cols=39 Identities=5% Similarity=0.211 Sum_probs=28.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++.+++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 71 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDA-GIVSEAFRLPAD 71 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 456666555556667777777777774 999999998764
No 448
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=25.81 E-value=1.9e+02 Score=22.79 Aligned_cols=46 Identities=17% Similarity=0.012 Sum_probs=30.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCC
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 120 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
..-+.||.+|+..|+ -..+.+.++...+.. -.-|.+..++++...|
T Consensus 67 aSPRhADvliVtG~V-T~km~~~L~rlyeqm--------PePK~VIA~GaCA~sG 112 (225)
T CHL00023 67 SSPRQADLILTAGTV-TMKMAPSLVRLYEQM--------PEPKYVIAMGACTITG 112 (225)
T ss_pred CCcccceEEEEecCC-ccccHHHHHHHHHhc--------CCCCeEEEEccccccC
Confidence 456789999998877 445555566666654 2457777777775543
No 449
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.79 E-value=3.7e+02 Score=21.97 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
++..+|.......+..-++...+.+++. |++++++.+++.
T Consensus 31 P~LaiI~vg~d~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 70 (282)
T PRK14182 31 TGLTVVRVGDDPASAIYVRGKRKDCEEV-GITSVEHHLPAT 70 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 3566666666666777788777888774 999999999754
No 450
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=25.62 E-value=2.2e+02 Score=22.30 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=22.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||.|++....-.++.+.+++ ++ .|+++++++..+.
T Consensus 1 ~~~~~~~~~~~~~~~l~~a~----~~-~g~~~~~~~~~~~ 35 (277)
T TIGR00768 1 KLAILYDRIRLDEKMLKEAA----EE-LGIDYKVVTPPAI 35 (277)
T ss_pred CEEEEEcCCCHHHHHHHHHH----HH-cCCceEEEEhHHc
Confidence 57888876544555555544 44 3889999987653
No 451
>PRK12559 transcriptional regulator Spx; Provisional
Probab=25.61 E-value=1.9e+02 Score=20.46 Aligned_cols=34 Identities=6% Similarity=0.093 Sum_probs=21.9
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
+.||++++ +++++..+.+. + .|++++.+|+....
T Consensus 2 i~iY~~~~C~~crkA~~~L~----~-~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE----E-NQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH----H-cCCCeEEEEeeCCc
Confidence 45787775 55665444333 3 48899999987644
No 452
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=25.37 E-value=2.2e+02 Score=24.84 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++||||+..+ .++..+.+.+++. |+++..++...
T Consensus 1 ~~~kvLi~~~g------eia~~ii~a~~~~-Gi~~v~v~~~~ 35 (472)
T PRK07178 1 MIKKILIANRG------EIAVRIVRACAEM-GIRSVAIYSEA 35 (472)
T ss_pred CCcEEEEECCc------HHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 77899998644 2455666666663 88887776654
No 453
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.35 E-value=1.3e+02 Score=22.90 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=20.5
Q ss_pred CeEEEEEccCC--CCCCchhHHHHHHHHHHHcCcEE
Q 028847 108 KPAGIFYSTGS--QGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 108 K~~~~~~t~g~--~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
|++++++|-|= ..||.++-++++...+.+.|..+
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 56777777653 34566655666666666555554
No 454
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=25.29 E-value=2.2e+02 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=20.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAAS 29 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~ 29 (203)
|..++|-.||..|+.....+...+.+.+
T Consensus 1 m~~v~i~lGSN~g~~~~~l~~A~~~L~~ 28 (159)
T PRK10239 1 MTVAYIAIGSNLASPLEQVNAALKALGD 28 (159)
T ss_pred CcEEEEEEeCchhhHHHHHHHHHHHHhc
Confidence 3577888899999777766666677765
No 455
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=25.21 E-value=1.7e+02 Score=19.98 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=22.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|||+|-.+.+.....+++ .+.+ .|.+|.++...+
T Consensus 1 KIl~i~~~~~~~~~~~~~----~L~~-~g~~V~ii~~~~ 34 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAK----ELKK-RGYDVHIITPRN 34 (139)
T ss_pred CEEEEecCcHHHHHHHHH----HHHH-CCCEEEEEEcCC
Confidence 677777776655554444 4444 388999988854
No 456
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=25.06 E-value=3.7e+02 Score=21.72 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=34.2
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
+|.||+..|. +..++..++.+.. .++...+.+-++.... . ....+.+.+...|..++..+++
T Consensus 60 ~dvvi~~v~~-----~~~~~~v~~~l~~-----~l~~g~ivid~st~~~----~-~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPA-----GEITDATIDELAP-----LLSPGDIVIDGGNSYY----K-DDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred CCEEEEEecC-----CcHHHHHHHHHHh-----hCCCCCEEEeCCCCCh----h-HHHHHHHHHHHcCCEEEeCCCC
Confidence 6999999986 2244444454421 2333333322222221 1 1345667888889999876654
No 457
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.03 E-value=2.8e+02 Score=20.31 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=20.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
.||.||.+|.+- ...++.+.+.|++ -|+.+++.-+
T Consensus 1 p~V~Ii~gs~SD--~~~~~~a~~~L~~-~gi~~~~~V~ 35 (150)
T PF00731_consen 1 PKVAIIMGSTSD--LPIAEEAAKTLEE-FGIPYEVRVA 35 (150)
T ss_dssp -EEEEEESSGGG--HHHHHHHHHHHHH-TT-EEEEEE-
T ss_pred CeEEEEeCCHHH--HHHHHHHHHHHHH-cCCCEEEEEE
Confidence 489999999743 3456666666666 3766655433
No 458
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=25.00 E-value=3.3e+02 Score=23.29 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+-+++.+.......+|+.|++.+++. |+++++..+.
T Consensus 323 l~l~~~~~~~~~~~~a~~i~~~l~~~-Gi~v~~~~~~ 358 (470)
T cd08490 323 LTLLTYTSRPELPPIAEAIQAQLKKI-GIDVEIRVVE 358 (470)
T ss_pred EEEEecCCCCchHHHHHHHHHHHHHc-CceEEEEEee
Confidence 44444444355678999999999985 9998876553
No 459
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.97 E-value=3.9e+02 Score=21.99 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=30.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++. |++++++++++.
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 71 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEV-GIEAIDVEIDPD 71 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 566777666666777788888888884 999999999864
No 460
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=24.92 E-value=2.5e+02 Score=22.62 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=23.2
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
.+|..|..-..+.+++++...+. ++++++...+...
T Consensus 2 yiVSDstGeTAe~v~~A~l~QF~---~~~~~~~~~p~I~ 37 (255)
T PF03618_consen 2 YIVSDSTGETAETVARAALAQFP---DVEFEIHRFPFIR 37 (255)
T ss_pred EEEecCchHHHHHHHHHHHHhCC---CCceEEEECCCcC
Confidence 35555543456778888888884 5577777666543
No 461
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=24.91 E-value=2.1e+02 Score=24.05 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 17 EKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 17 ~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
...+....+.|++ .|+++.++++....
T Consensus 258 ~~~a~eA~~~L~~-~Gi~v~vi~~~~l~ 284 (352)
T PRK07119 258 ARIAKSAVDMARE-EGIKVGLFRPITLW 284 (352)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEeeceec
Confidence 3344455555555 38889999987654
No 462
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=24.90 E-value=2.8e+02 Score=20.24 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=30.4
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..+..|++.+... ...+.++.++++-
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~----~~~~~~~ivv~nK 114 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRY----ARENVIKVIVANK 114 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 34577899999998876544445566677666421 1234666666664
No 463
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=24.85 E-value=1.8e+02 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=11.8
Q ss_pred hhhhccCeEEEecccC
Q 028847 66 NELAEADGILLGFPTR 81 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y 81 (203)
+.+.++|.+||+.||-
T Consensus 74 ~~i~~advi~I~V~TP 89 (473)
T PLN02353 74 KHVAEADIVFVSVNTP 89 (473)
T ss_pred HHHhcCCEEEEEeCCC
Confidence 3588999999975443
No 464
>PRK08084 DNA replication initiation factor; Provisional
Probab=24.83 E-value=2.1e+02 Score=22.27 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=24.4
Q ss_pred EEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 5 VYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
.+++||.+ .|.|. ++..++..+.+ .|..+.++.+.+
T Consensus 47 ~l~l~Gp~G~GKTh-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSH-LLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHh-CCCeEEEEEHHH
Confidence 56788775 78888 56666666655 366777777754
No 465
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=24.80 E-value=1.1e+02 Score=22.49 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=28.6
Q ss_pred hhhccCeEEEecccCC--CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 67 ELAEADGILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~--~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
+..++|.|||...... ......+.+|+.+.. -++|+++.++++.
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g~ 106 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAA-------ARGARVASVCTGA 106 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHH-------hcCCEEEEECHHH
Confidence 5668999998754222 233566777777652 3588888777653
No 466
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=24.77 E-value=1.2e+02 Score=23.26 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh--hccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 24 QKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 24 ~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
.+.|++ .|++|..+.+++..+...... ..+.+ .+.|.|+|.||. .++.|++.+.
T Consensus 133 ~~~L~~-~g~~v~~~~vY~~~~~~~~~~------------~~~~l~~~~~~~v~ftS~~-------~~~~~~~~~~ 188 (231)
T PF02602_consen 133 PEKLRE-AGIEVTEVIVYETPPEELSPE------------LKEALDRGEIDAVVFTSPS-------AVRAFLELLK 188 (231)
T ss_dssp HHHHHH-TTEEEEEEECEEEEEHHHHHH------------HHHHHHHTTTSEEEESSHH-------HHHHHHHHSS
T ss_pred HHHHHH-CCCeEEEEEEeecccccchHH------------HHHHHHcCCCCEEEECCHH-------HHHHHHHHhH
Confidence 455555 377888887777511111100 12233 578999999875 6788888874
No 467
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=24.59 E-value=1e+02 Score=22.42 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=16.1
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHh
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGA 27 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l 27 (203)
||++ +++.|.+ .|-|. +++.+++.+
T Consensus 1 ~~~~-i~~~G~~GsGKst-~~~~la~~l 26 (171)
T PRK03731 1 MTQP-LFLVGARGCGKTT-VGMALAQAL 26 (171)
T ss_pred CCCe-EEEECCCCCCHHH-HHHHHHHHh
Confidence 7644 4455654 55544 788888887
No 468
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=24.54 E-value=2.6e+02 Score=21.60 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.5
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
..|.|+|.||. .+++|++.+.
T Consensus 170 ~~d~i~f~S~~-------~~~~f~~~~~ 190 (240)
T PRK09189 170 PFDAVLLYSRV-------AARRFFALMR 190 (240)
T ss_pred CCCEEEEeCHH-------HHHHHHHHHh
Confidence 46999999987 4788888763
No 469
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=24.52 E-value=38 Score=24.19 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=27.7
Q ss_pred hhhccCeEEEecccC-CCCc---HHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTR-FGMM---AAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y-~~~~---~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+||+|||-.-.. ...+ ++.+..|+.... -.+|+++.++.+
T Consensus 34 ~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~-------~~~k~iaaIC~g 80 (147)
T PF01965_consen 34 DPSDYDALILPGGHGGADDLRTDSKDLLELLKEFY-------EAGKPIAAICHG 80 (147)
T ss_dssp TGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHH-------HTT-EEEEETTC
T ss_pred ChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHH-------HcCCeEEecCCC
Confidence 455799999864422 2222 478889998874 358888887764
No 470
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=24.44 E-value=57 Score=17.81 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=5.7
Q ss_pred ceEEEEEecC
Q 028847 3 TKVYIVYYSM 12 (203)
Q Consensus 3 ~kilIiy~S~ 12 (203)
||||||..|.
T Consensus 1 kkiLiV~Ts~ 10 (38)
T PF13587_consen 1 KKILIVVTSH 10 (38)
T ss_dssp SEEEEEE---
T ss_pred CeEEEEEcCc
Confidence 4888888775
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=24.42 E-value=3.8e+02 Score=21.55 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=25.5
Q ss_pred hhhhccCeEEEecccCCCC-----cHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGM-----MAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~-----~~~~lk~fld~~~ 97 (203)
....++|.+++|+|...|+ +...++.||+++.
T Consensus 94 ~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~ 130 (255)
T COG3640 94 VENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLI 130 (255)
T ss_pred hhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHh
Confidence 3456799999999997654 6788999999873
No 472
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=24.31 E-value=2.2e+02 Score=23.20 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=43.1
Q ss_pred eEEEE-EecCcch--------HHHHHHHHHHHhhccCCceEEEEEcCCC-CchhHhhhcCCCCCCCCCCCChhhhhccCe
Q 028847 4 KVYIV-YYSMYGH--------VEKLAEEIQKGAASVEGVEAKLWQVPET-LSEDVLGKMGAGPKSDVPTITPNELAEADG 73 (203)
Q Consensus 4 kilIi-y~S~~G~--------T~~la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 73 (203)
|++|. |+..+|. -+.|.+.+.+.+.+. | ++++..... ++. +++....-.++........+.++|+
T Consensus 2 kilifEyA~atg~ee~~i~~EG~aMlesll~~F~~~-~--ve~y~~~~f~~~~--ig~~f~s~~~~~~~~~ek~le~~Da 76 (307)
T COG1821 2 KILIFEYAVATGIEEFNILAEGRAMLESLLRAFAKS-G--VEVYETLTFADPS--IGVRFKSTADDVLRDEEKALEKADA 76 (307)
T ss_pred eEEEEEeecccCccchhhhHhHHHHHHHHHHHHHhc-C--ceEEEeecccccc--cceeeecchhHHHHHHHHHHhcCCe
Confidence 88887 4444442 356778888888774 5 444333321 111 1111100000000112457889999
Q ss_pred EEEecccCCCCcHHHHH
Q 028847 74 ILLGFPTRFGMMAAQFK 90 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk 90 (203)
-++..|.=.+-++...|
T Consensus 77 ~LvIAPEdd~lLy~Ltr 93 (307)
T COG1821 77 TLVIAPEDDGLLYSLTR 93 (307)
T ss_pred eEEEecCcCChHHHHHH
Confidence 99999976655554433
No 473
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=24.17 E-value=2.7e+02 Score=19.76 Aligned_cols=50 Identities=6% Similarity=0.110 Sum_probs=32.9
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-+-...-...+++|++.+.... .....+.|+.++++-
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilv~nK 117 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIK-GNNIEKIPIMLVGNK 117 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCCEEEEEEC
Confidence 35678999999877766555556788877664221 112356788887764
No 474
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=24.13 E-value=3.7e+02 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=22.8
Q ss_pred EEEEEec-CcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 5 VYIVYYS-MYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 5 ilIiy~S-~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|.+|..+ .+.....+.+.+.+.+++ .|+++.++
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~-~g~~v~~~ 35 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKE-LGVDAIYV 35 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHH-hCCeEEEE
Confidence 5555543 456677788888888888 48777764
No 475
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=24.13 E-value=1.4e+02 Score=25.07 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=43.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR- 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y- 81 (203)
.||.+|-|=.-| ..+..+..+.++.. +.++++.... ..... .. ...+..|....+.++++|++++|.=..
T Consensus 2 ~~I~vipGDGIG--pEv~~~~~~vl~~~-~~~~~~~~~~-~G~~~-~~----~~G~~lp~~~l~~~~~~da~l~G~vg~p 72 (330)
T PRK14025 2 HKICVIEGDGIG--KEVVPAALHVLEAT-GLPFEFVYAE-AGDEV-FE----KTGKALPEETIEAAKEADAVLFGAAGET 72 (330)
T ss_pred eEEEEECCCccc--HHHHHHHHHHHHhc-CCcEEEEEEc-CCHHH-HH----HhCCCCCHHHHHHHHHCCEEEEccCCCC
Confidence 488888765444 44444444545432 4455554432 11111 11 011233444578899999999975321
Q ss_pred CCCcHHHHHHHHHHh
Q 028847 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~lk~fld~~ 96 (203)
..++--.|+.-||..
T Consensus 73 ~~~~~~~LR~~ldly 87 (330)
T PRK14025 73 AADVIVKLRRILDTY 87 (330)
T ss_pred ccchHHHHHHHcCCe
Confidence 234445555555544
No 476
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=23.90 E-value=1.9e+02 Score=20.82 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=30.8
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
..+..+|++|+..-.-...-...++.++..+.. ...+.++|+.++++--
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK~ 110 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANKQ 110 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeCC
Confidence 457899999998554443323345666665531 1245689999888753
No 477
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=23.89 E-value=2.9e+02 Score=25.44 Aligned_cols=62 Identities=24% Similarity=0.164 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhhccCCc-eEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHH
Q 028847 15 HVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL 93 (203)
Q Consensus 15 ~T~~la~~i~~~l~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fl 93 (203)
++..+|.+...-+.+. |+ -||+..+.+.+. +.=..||++-+=+|+=-++-|..+|.|+
T Consensus 162 ~~~e~a~~llpYl~el-G~T~IELMPv~e~p~--------------------~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 162 GYFELAIELLPYLKEL-GITHIELMPVAEHPG--------------------DRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred CHHHHHHHHhHHHHHh-CCCEEEEcccccCCC--------------------CCCCCCCcceeccccccCCCHHHHHHHH
Confidence 6889999999999885 76 467776665321 2335689999999999899999999999
Q ss_pred HHhc
Q 028847 94 DATG 97 (203)
Q Consensus 94 d~~~ 97 (203)
|.+.
T Consensus 221 D~aH 224 (628)
T COG0296 221 DAAH 224 (628)
T ss_pred HHHH
Confidence 9884
No 478
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=23.88 E-value=3.1e+02 Score=20.36 Aligned_cols=47 Identities=6% Similarity=0.005 Sum_probs=29.4
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+..+|++||..-.-...--..++.|++.+... ....++++.++++-
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~NK 113 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEV---KEDKFVPIVVVGNK 113 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEc
Confidence 567899999987664433334456666655321 12357888888875
No 479
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=23.87 E-value=2.9e+02 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=26.2
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEE---EEEcCCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAK---LWQVPET 43 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~---~~~l~~~ 43 (203)
|+.||.+-- .--|.+|.+-..+.+... |.+.+ ++.++-.
T Consensus 14 riaIV~arfn~~I~d~ll~gA~~~l~~~-G~~~~~i~vv~VPGa 56 (152)
T COG0054 14 RIAIVVARFNDDITDALLEGAVDALKRH-GADVDNIDVVRVPGA 56 (152)
T ss_pred eEEEEEeehhHHHHHHHHHHHHHHHHHc-CCCcccceEEEeCCc
Confidence 677777554 345888888888888773 65544 6666643
No 480
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=23.85 E-value=3.2e+02 Score=20.55 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=27.2
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.+..+|++|+..-+-...--..++.|+..+.. ...+.++.++++
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~~i~lv~n 121 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-----VCENIPIVLVGN 121 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 45678999988777655544566677766542 124556555554
No 481
>PF01750 HycI: Hydrogenase maturation protease; InterPro: IPR000671 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date []. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor undergoes a complex post-translational maturation process that requires a number of accessory proteins [, , ]. At one step of this process, after nickel incorporation, each hydrogenase isoenzyme is processed by proteolytic cleavage at the C-terminal end by the corresponding hydrogenase maturation endopeptidase []. For example, Escherichia coli HycI is involved in processing of pre-HycE (the large subunit of hydrogenase 3) [, ]; HybD is involved in processing of pre-HybC (the large subunit of hydrogenase 2) []; and HyaD is assumed to be involved in processing of the large subunit of hydrogenase 1. This group represents metallopeptidases of the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The cleavage site is after a His or an Arg, liberating a short peptide [, ]. This cleavage occurs only in the presence of nickel, and the endopeptidase probably uses the metal in the large subunit of [NiFe]-hydrogenases as a recognition motif []. There is no direct evidence for the active site or substrate-binding site, but there are predictions based on an available structure []. Nomenclature note: the following names are used in different organisms for members of this group: HycI, HybD, HyaD, HoxM, HoxW, HupD, HynC, HupM, VhoD, VhtD []. Gene/protein names are sometimes used interchangeably to designate various "hydrogenase cluster" proteins unrelated to each other in various organisms. For example, the following names are used for members of this group, but also for unrelated proteins: HupD is used in Azotobacter chroococcum and Anabaena species to designate an unrelated hydrogenase maturation factor; HydD is used to designate hydrogenase structural genes in Thermococcus litoralis, Pyrococcus abyssi, and other species.; GO: 0008047 enzyme activator activity, 0008233 peptidase activity; PDB: 1CFZ_E 2E85_B 2I8L_A 2KML_A.
Probab=23.72 E-value=1.3e+02 Score=20.86 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHH
Q 028847 18 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFK 90 (203)
Q Consensus 18 ~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk 90 (203)
++++.+++..... + +++++|....... ....+..+|.+||.=-+..+.-|+.+.
T Consensus 2 ~v~~~L~~~~~~~-~-~v~vid~gt~g~~-----------------ll~~l~~~d~vIiVDAv~~~~~pG~i~ 55 (130)
T PF01750_consen 2 HVAERLKERYSPP-D-NVEVIDGGTDGLD-----------------LLDLLEGYDRVIIVDAVDGGGEPGTIY 55 (130)
T ss_dssp HHHHHHHHCEE---T-TEEEEEETTTCGG-----------------GHHHHSS-SEEEEEEE--SSS-TT-EE
T ss_pred HHHHHHHhhCCCC-C-CEEEEECCCCHHH-----------------HHHHHhCCCEEEEEEcCCCCCCCcEEE
Confidence 3566666655442 2 5889998765432 246788899999998888888887653
No 482
>CHL00194 ycf39 Ycf39; Provisional
Probab=23.69 E-value=2.3e+02 Score=22.91 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=12.0
Q ss_pred hhhhhccCeEEEecccC
Q 028847 65 PNELAEADGILLGFPTR 81 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y 81 (203)
...+..+|.||-..+..
T Consensus 59 ~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 59 PPSFKGVTAIIDASTSR 75 (317)
T ss_pred HHHHCCCCEEEECCCCC
Confidence 34577889999876544
No 483
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=23.66 E-value=4.6e+02 Score=22.30 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=41.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC--CCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe---c
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP--ETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG---F 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig---s 78 (203)
||.+|.|=.-| ..+.++..+.+... ++.+++.... .. ....|+...+.+.++|++++| +
T Consensus 32 ~I~vipGDGIG--pEV~~~a~~vl~a~-~~~i~~~~~~~G~~-------------~~~lp~~~l~~~~~~da~L~Gavg~ 95 (360)
T PLN00123 32 AVTLIPGDGIG--PLVTGAVEQVMEAM-HAPVYFERYEVHGD-------------MKKVPEEVLESIRRNKVCLKGGLAT 95 (360)
T ss_pred EEEEECCCCcc--HHHHHHHHHHHHhC-CCceEEEEEccCCC-------------CccCCHHHHHHHHHCCEEEEccccC
Confidence 56666654433 44555555555442 4444444332 11 112333457789999999999 7
Q ss_pred ccCCCCcH--HHHHHHHHHh
Q 028847 79 PTRFGMMA--AQFKAFLDAT 96 (203)
Q Consensus 79 P~y~~~~~--~~lk~fld~~ 96 (203)
|.|.+..+ -.|+.-+|..
T Consensus 96 p~~~~~~s~~l~LR~~ldLy 115 (360)
T PLN00123 96 PVGGGVSSLNVQLRKELDLF 115 (360)
T ss_pred CCCcCccchHHHHHHHcCCE
Confidence 87654222 4455555543
No 484
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=23.58 E-value=1.3e+02 Score=23.52 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=28.6
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||+++..+. .|.....+..+++.+.+ .|.++.++.....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDK-RGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHh-cCceEEEEEcCCC
Confidence 578887775 56677777778888866 4889998876553
No 485
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=23.55 E-value=1.9e+02 Score=19.72 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=21.8
Q ss_pred EEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 7 IVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 7 Iiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
.+|++++ +.+++..+.+.+ .|++++.+|+.+.++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-----KGIEPEVVKYLKNPP 36 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCeEEEeccCCCc
Confidence 4788875 445554433333 378999999987554
No 486
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=23.52 E-value=2.2e+02 Score=21.12 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCceEEEEEec-CcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 1 MATKVYIVYYS-MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 1 mm~kilIiy~S-~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|| +|+-|.|+ .+|.|- +.+.+...+++ .|..|-.+.-..-+++ + ....+|.+. -.=..+|.+++.++
T Consensus 1 m~-~Il~ivG~k~SGKTT-Lie~lv~~L~~-~G~rVa~iKH~hh~~~--~---D~~GkDs~r----~~~aGa~~~v~~s~ 68 (161)
T COG1763 1 MM-KILGIVGYKNSGKTT-LIEKLVRKLKA-RGYRVATVKHAHHDFD--L---DKPGKDTYR----HRKAGADQVVVASD 68 (161)
T ss_pred CC-cEEEEEecCCCChhh-HHHHHHHHHHh-CCcEEEEEEecCCCCC--C---CCCCCccch----hhccccceEEEecC
Confidence 55 78766655 578876 55666666766 3877766655432210 0 001111111 12235677777777
Q ss_pred cCCCCc---H-HHHHHHHHHhc
Q 028847 80 TRFGMM---A-AQFKAFLDATG 97 (203)
Q Consensus 80 ~y~~~~---~-~~lk~fld~~~ 97 (203)
..+.-+ + ..|...+.++.
T Consensus 69 ~~~~~~~~~~~~~L~~vl~~l~ 90 (161)
T COG1763 69 HRTALMTRTPDRDLDAVLSRLD 90 (161)
T ss_pred CEEEEEEecCCcCHHHHHHhcC
Confidence 765444 3 34456666654
No 487
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.49 E-value=1.2e+02 Score=23.16 Aligned_cols=47 Identities=23% Similarity=0.182 Sum_probs=34.8
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
...+..+|.|++.+|.+...-....++++|-... .|-+..++.+.+.
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~-------agVk~~v~ss~~~ 105 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA-------AGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH-------HT-SEEEESEESS
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc-------cccceEEEEEecc
Confidence 4578999999999999887778888999998742 3445555665543
No 488
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=23.38 E-value=85 Score=24.68 Aligned_cols=29 Identities=10% Similarity=-0.160 Sum_probs=19.5
Q ss_pred hhccCeEEEec---ccCCCCcHHHHHHHHHHh
Q 028847 68 LAEADGILLGF---PTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 68 l~~aD~iiigs---P~y~~~~~~~lk~fld~~ 96 (203)
..+||+|+|-. |.|...-...+..++.++
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f 125 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWA 125 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHH
Confidence 46899999864 455555555666666665
No 489
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=23.33 E-value=2.6e+02 Score=20.17 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=28.0
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCce---EEEEEcCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGVE---AKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~---v~~~~l~~ 42 (203)
|++||.+..+. -|..|.+...+.+.+. |++ ++++.++-
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~-g~~~~~i~v~~VPG 43 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRL-GAEVDNIDVIWVPG 43 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHc-CCCccceEEEECCc
Confidence 89999877654 5889999888888874 765 45666654
No 490
>PRK09982 universal stress protein UspD; Provisional
Probab=23.23 E-value=2.5e+02 Score=19.66 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=23.9
Q ss_pred ceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|||+-. +|. +++++++...+.+++ .+.++.++.+-+
T Consensus 4 k~ILvavD~S~--~s~~al~~A~~lA~~-~~a~l~llhV~~ 41 (142)
T PRK09982 4 KHIGVAISGNE--EDALLVNKALELARH-NDAHLTLIHIDD 41 (142)
T ss_pred eEEEEEecCCc--chHHHHHHHHHHHHH-hCCeEEEEEEcc
Confidence 5677655 443 456666666666655 477888888754
No 491
>PRK03673 hypothetical protein; Provisional
Probab=23.22 E-value=3.7e+02 Score=23.13 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=21.0
Q ss_pred CCceEEEEE-ecC--cch-HHHHHHHHHHHhhccCCceEEEEEcCCCCchh
Q 028847 1 MATKVYIVY-YSM--YGH-VEKLAEEIQKGAASVEGVEAKLWQVPETLSED 47 (203)
Q Consensus 1 mm~kilIiy-~S~--~G~-T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~ 47 (203)
|| |+.||. |+- .|. ...-+..++..+.+ .|+++.....-..+++.
T Consensus 1 ~~-~v~Iis~GdEll~G~i~dtN~~~la~~L~~-~G~~v~~~~~v~D~~~~ 49 (396)
T PRK03673 1 ML-RVEMLSTGDEVLHGQIVDTNAAWLADFFFH-QGLPLSRRNTVGDNLDA 49 (396)
T ss_pred CC-EEEEEEecccCCCCeEEEhHHHHHHHHHHH-CCCEEEEEEEcCCCHHH
Confidence 54 777665 442 231 11123334444554 38777654443334433
No 492
>PRK08219 short chain dehydrogenase; Provisional
Probab=23.19 E-value=1.1e+02 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=14.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHH
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKG 26 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~ 26 (203)
||+|..+|.|...+-...+++.+++.
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh
Confidence 54455556665555556666666554
No 493
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.18 E-value=5.6e+02 Score=24.03 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~f 92 (203)
+|+.-..|...++.|++ .|++++++|+....|-+- +...+.+.+++.||..==-+.|++-..+-.+
T Consensus 575 ~G~mv~~Al~AA~~L~~-~GI~vtVIdlr~ikPLD~-------------e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~ 640 (701)
T PLN02225 575 YGAMVQNCLHAHSLLSK-LGLNVTVADARFCKPLDI-------------KLVRDLCQNHKFLITVEEGCVGGFGSHVAQF 640 (701)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCH-------------HHHHHHHhhcCeEEEEcCCCCCchHHHHHHH
Confidence 46666667777777777 499999999987644110 0113456678887777444458888888888
Q ss_pred HHHh
Q 028847 93 LDAT 96 (203)
Q Consensus 93 ld~~ 96 (203)
+-..
T Consensus 641 l~~~ 644 (701)
T PLN02225 641 IALD 644 (701)
T ss_pred HHhc
Confidence 7654
No 494
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.16 E-value=1.7e+02 Score=19.65 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=16.8
Q ss_pred EecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCc
Q 028847 9 YYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS 45 (203)
Q Consensus 9 y~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~ 45 (203)
|++++ +.+++..+.+. + .|++++.+|+.+.++
T Consensus 1 Y~~~~C~t~rka~~~L~----~-~gi~~~~~d~~k~p~ 33 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLE----E-NGIEYEFIDYKKEPL 33 (110)
T ss_dssp EE-TT-HHHHHHHHHHH----H-TT--EEEEETTTS--
T ss_pred CcCCCCHHHHHHHHHHH----H-cCCCeEeehhhhCCC
Confidence 45543 44555444443 3 489999999987544
No 495
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=23.15 E-value=2.2e+02 Score=21.51 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=11.1
Q ss_pred hhhhhccCeEEEec
Q 028847 65 PNELAEADGILLGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+++.++|+|||=-
T Consensus 34 ~~~l~~~D~LILPG 47 (179)
T PRK13526 34 NNDFDSIDRLVIPG 47 (179)
T ss_pred HHHHhCCCEEEECC
Confidence 34788999999965
No 496
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.06 E-value=3.6e+02 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=19.8
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
+.+.++|.||+++|.+ .++.+++.+.
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~ 98 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELA 98 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHH
Confidence 3467899999999954 5677777764
No 497
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=23.05 E-value=3.1e+02 Score=22.35 Aligned_cols=32 Identities=6% Similarity=0.079 Sum_probs=22.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAK 36 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~ 36 (203)
+|+.|++.. +..++.+++.+.+.+++. |.++.
T Consensus 125 k~vaii~~~-~~~g~~~~~~f~~~~~~~-G~~vv 156 (336)
T cd06339 125 RRPLVLAPD-GAYGQRVADAFRQAWQQL-GGTVV 156 (336)
T ss_pred cceEEEecC-ChHHHHHHHHHHHHHHHc-CCcee
Confidence 578888743 445577888888888874 65654
No 498
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=23.05 E-value=2.7e+02 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=25.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|++||++. .-....+.+.+.+.|++ .|+++.+++
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~-~~i~~~~~~ 56 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEE-AGIEVQVFD 56 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHH-TTCEEEEEE
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhh-CceEEEEEe
Confidence 78999877 33333378888888877 488888887
No 499
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.04 E-value=2.8e+02 Score=23.87 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=30.0
Q ss_pred cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEE
Q 028847 78 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 78 sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
.|+|-.++...+..|.++... .-++ ++.++..+.. +..+.....+.+-|.+.|..+
T Consensus 223 G~i~~~~~~~i~~~Y~~W~~~-----~~~~-~V~l~Y~smy--g~T~~ma~aiaegl~~~gv~v 278 (388)
T COG0426 223 GPIWRGNPKEIVEAYRDWAEG-----QPKG-KVDLIYDSMY--GNTEKMAQAIAEGLMKEGVDV 278 (388)
T ss_pred CceeeCCHHHHHHHHHHHHcc-----CCcc-eEEEEEeccc--CCHHHHHHHHHHHhhhcCCce
Confidence 466777788888999998852 2334 5555554332 112222333444444444444
No 500
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.95 E-value=2.9e+02 Score=19.65 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=43.8
Q ss_pred EEEecCcchHHHHHH-HHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCc
Q 028847 7 IVYYSMYGHVEKLAE-EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMM 85 (203)
Q Consensus 7 Iiy~S~~G~T~~la~-~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~ 85 (203)
||.++..|..+-+.+ .++..++. .| .+++|+...-+..- ..+...+.|.-+++-....++-
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~-~G--feVidLG~~v~~e~---------------~v~aa~~~~adiVglS~L~t~~ 63 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTE-AG--FNVVNLGVLSPQEE---------------FIDAAIETDADAILVSSLYGHG 63 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHH-CC--CEEEECCCCCCHHH---------------HHHHHHHcCCCEEEEeccccCC
Confidence 445665554444444 34455555 46 55678875433211 1345556566666667777777
Q ss_pred HHHHHHHHHHhc
Q 028847 86 AAQFKAFLDATG 97 (203)
Q Consensus 86 ~~~lk~fld~~~ 97 (203)
-..++..++.+.
T Consensus 64 ~~~~~~~~~~l~ 75 (128)
T cd02072 64 EIDCKGLREKCD 75 (128)
T ss_pred HHHHHHHHHHHH
Confidence 788999999885
Done!