Query 028847
Match_columns 203
No_of_seqs 211 out of 2106
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5l_A Trp repressor binding p 100.0 9.7E-34 3.3E-38 216.9 19.0 195 2-201 5-200 (200)
2 3b6i_A Flavoprotein WRBA; flav 100.0 2.4E-33 8.3E-38 214.3 20.9 194 1-200 1-197 (198)
3 1ydg_A Trp repressor binding p 100.0 5.1E-32 1.7E-36 209.2 16.6 191 2-201 6-202 (211)
4 2zki_A 199AA long hypothetical 100.0 2.2E-31 7.6E-36 203.7 19.4 192 2-201 4-196 (199)
5 3d7n_A Flavodoxin, WRBA-like p 100.0 3.4E-30 1.2E-34 196.6 10.8 180 2-201 6-189 (193)
6 2ark_A Flavodoxin; FMN, struct 100.0 3.8E-28 1.3E-32 184.5 17.8 163 2-200 4-169 (188)
7 3hly_A Flavodoxin-like domain; 100.0 5.5E-28 1.9E-32 179.4 17.5 143 4-198 2-144 (161)
8 3fni_A Putative diflavin flavo 100.0 1.7E-27 5.9E-32 176.3 17.4 144 3-198 5-149 (159)
9 2vzf_A NADH-dependent FMN redu 99.9 1.7E-27 5.9E-32 182.1 10.2 175 1-200 1-179 (197)
10 3fvw_A Putative NAD(P)H-depend 99.9 6.9E-27 2.3E-31 178.2 12.2 180 1-202 1-188 (192)
11 1sqs_A Conserved hypothetical 99.9 7.4E-27 2.5E-31 184.0 12.4 168 1-198 1-179 (242)
12 3f6r_A Flavodoxin; FMN binding 99.9 1E-25 3.5E-30 164.6 15.0 142 2-194 1-146 (148)
13 5nul_A Flavodoxin; electron tr 99.9 1E-25 3.5E-30 162.7 13.6 135 5-194 1-137 (138)
14 2q62_A ARSH; alpha/beta, flavo 99.9 5.2E-25 1.8E-29 173.6 18.0 177 2-201 34-213 (247)
15 3u7r_A NADPH-dependent FMN red 99.9 3.5E-25 1.2E-29 168.0 13.9 173 1-198 1-180 (190)
16 2fzv_A Putative arsenical resi 99.9 1.6E-24 5.5E-29 172.9 17.5 178 2-201 58-238 (279)
17 1rtt_A Conserved hypothetical 99.9 2E-25 6.8E-30 170.0 10.8 177 3-201 7-187 (193)
18 3k1y_A Oxidoreductase; structu 99.9 4.9E-25 1.7E-29 167.5 11.4 171 2-199 11-189 (191)
19 1f4p_A Flavodoxin; electron tr 99.9 1.9E-24 6.4E-29 157.6 12.7 140 4-194 2-145 (147)
20 2q9u_A A-type flavoprotein; fl 99.9 4.4E-24 1.5E-28 180.0 16.5 149 2-200 256-407 (414)
21 2fz5_A Flavodoxin; alpha/beta 99.9 5.8E-24 2E-28 152.9 12.8 133 5-194 2-136 (137)
22 3gfs_A FMN-dependent NADPH-azo 99.9 2.6E-25 8.7E-30 166.8 5.8 167 4-199 2-170 (174)
23 4hs4_A Chromate reductase; tri 99.9 2.7E-23 9.3E-28 159.0 16.7 177 3-201 7-189 (199)
24 1rli_A Trp repressor binding p 99.9 1E-25 3.5E-30 170.0 2.5 164 1-193 3-182 (184)
25 2hpv_A FMN-dependent NADH-azor 99.9 4.8E-23 1.6E-27 158.5 14.3 142 1-144 1-177 (208)
26 1t5b_A Acyl carrier protein ph 99.9 7.2E-23 2.5E-27 156.3 15.0 143 1-144 1-171 (201)
27 1czn_A Flavodoxin; FMN binding 99.9 3.7E-22 1.3E-26 148.7 16.9 162 4-195 2-166 (169)
28 2ohh_A Type A flavoprotein FPR 99.9 7.4E-23 2.5E-27 171.7 14.4 147 3-197 257-403 (404)
29 3svl_A Protein YIEF; E. coli C 99.9 3E-23 1E-27 158.1 10.2 176 3-199 5-186 (193)
30 1t0i_A YLR011WP; FMN binding p 99.9 3.5E-23 1.2E-27 157.2 8.4 132 4-143 2-149 (191)
31 3p0r_A Azoreductase; structura 99.9 8.9E-23 3E-27 157.6 10.6 142 1-143 3-179 (211)
32 1obo_A Flavodoxin; electron tr 99.9 2.2E-21 7.5E-26 144.5 17.5 163 3-196 2-167 (169)
33 3s2y_A Chromate reductase; ura 99.8 1.4E-24 4.7E-29 166.2 0.0 178 3-201 7-189 (199)
34 1ag9_A Flavodoxin; electron tr 99.9 1.9E-21 6.5E-26 145.9 17.0 163 4-196 2-167 (175)
35 3r6w_A FMN-dependent NADH-azor 99.9 4.2E-22 1.4E-26 153.8 13.7 143 1-144 1-181 (212)
36 1ykg_A SIR-FP, sulfite reducta 99.9 4.9E-22 1.7E-26 148.0 12.6 146 2-198 9-155 (167)
37 2wc1_A Flavodoxin; electron tr 99.9 6.5E-22 2.2E-26 149.2 13.1 166 2-197 1-177 (182)
38 4dik_A Flavoprotein; TM0755, e 99.9 6.4E-22 2.2E-26 166.5 14.1 141 3-193 266-409 (410)
39 1d4a_A DT-diaphorase, quinone 99.9 2.8E-22 9.6E-27 160.4 11.2 118 1-119 1-151 (273)
40 1e5d_A Rubredoxin\:oxygen oxid 99.9 2.1E-21 7.1E-26 162.8 16.1 147 3-199 253-399 (402)
41 3lcm_A SMU.1420, putative oxid 99.9 9.3E-22 3.2E-26 150.2 12.5 139 4-144 2-160 (196)
42 1yob_A Flavodoxin 2, flavodoxi 99.9 4.2E-21 1.4E-25 144.5 15.0 163 3-195 1-174 (179)
43 1ycg_A Nitric oxide reductase; 99.9 1.9E-21 6.6E-26 162.8 14.5 145 3-197 252-397 (398)
44 3u7i_A FMN-dependent NADH-azor 99.9 2E-21 6.7E-26 151.1 12.8 172 2-196 4-213 (223)
45 3f2v_A General stress protein 99.9 3E-21 1E-25 146.6 12.1 133 2-145 1-148 (192)
46 2fcr_A Flavodoxin; electron tr 99.9 1.6E-20 5.6E-25 140.5 15.5 163 4-196 1-171 (173)
47 2hna_A Protein MIOC, flavodoxi 99.9 1.2E-22 4.2E-27 148.2 2.5 141 2-196 1-146 (147)
48 3klb_A Putative flavoprotein; 99.8 2.7E-20 9.1E-25 138.0 13.9 124 2-142 4-139 (162)
49 2amj_A Modulator of drug activ 99.8 1.6E-19 5.4E-24 138.6 16.8 126 3-144 13-176 (204)
50 3tem_A Ribosyldihydronicotinam 99.8 3.5E-20 1.2E-24 144.5 12.9 116 3-119 2-150 (228)
51 2bmv_A Flavodoxin; electron tr 99.8 4.3E-20 1.5E-24 137.0 12.2 158 2-194 1-161 (164)
52 4ici_A Putative flavoprotein; 99.8 2.2E-19 7.4E-24 134.2 13.8 124 2-142 13-148 (171)
53 3rpe_A MDAB, modulator of drug 99.8 4E-19 1.4E-23 137.1 15.2 128 2-145 25-190 (218)
54 3edo_A Flavoprotein, putative 99.8 2.5E-20 8.6E-25 136.5 7.9 128 1-142 2-137 (151)
55 4gi5_A Quinone reductase; prot 99.8 5.5E-19 1.9E-23 141.2 13.9 116 3-119 23-178 (280)
56 1bvy_F Protein (cytochrome P45 99.8 2.1E-19 7.3E-24 136.4 10.1 144 3-197 22-167 (191)
57 3ha2_A NADPH-quinone reductase 99.8 4.9E-18 1.7E-22 127.3 11.2 122 4-145 2-140 (177)
58 3l9w_A Glutathione-regulated p 99.7 1.1E-17 3.9E-22 140.8 11.3 160 3-198 237-410 (413)
59 3hr4_A Nitric oxide synthase, 99.7 6.4E-16 2.2E-20 119.0 15.1 119 3-145 41-160 (219)
60 2bpo_A CPR, P450R, NADPH-cytoc 99.6 2.4E-15 8.1E-20 133.8 15.3 149 2-198 49-200 (682)
61 3qe2_A CPR, P450R, NADPH--cyto 99.5 2.8E-13 9.7E-18 119.3 14.0 122 3-144 19-143 (618)
62 2xod_A NRDI protein, NRDI; fla 99.5 6.8E-14 2.3E-18 98.1 8.0 115 5-193 1-117 (119)
63 1tll_A Nitric-oxide synthase, 99.4 2.1E-12 7.3E-17 115.0 15.4 147 3-198 12-199 (688)
64 1rlj_A NRDI protein; flavoprot 99.2 2E-11 6.9E-16 87.7 6.9 118 4-194 10-129 (139)
65 3n3a_C Protein NRDI; ribonucle 99.0 2.3E-10 8E-15 82.5 5.5 122 5-194 23-150 (153)
66 2m1z_A LMO0427 protein; homolo 97.6 0.00016 5.5E-09 48.8 6.3 85 1-117 1-87 (106)
67 2kyr_A Fructose-like phosphotr 97.6 0.00016 5.6E-09 49.1 6.2 86 1-118 4-91 (111)
68 1tvm_A PTS system, galactitol- 96.8 0.0037 1.3E-07 42.6 6.4 58 2-81 21-80 (113)
69 1e2b_A Enzyme IIB-cellobiose; 96.7 0.0045 1.6E-07 41.7 6.5 57 2-80 3-59 (106)
70 2r48_A Phosphotransferase syst 95.9 0.021 7.1E-07 38.4 6.0 82 3-117 3-86 (106)
71 3czc_A RMPB; alpha/beta sandwi 95.9 0.0098 3.4E-07 40.2 4.4 57 2-80 18-77 (110)
72 2r4q_A Phosphotransferase syst 95.7 0.018 6.1E-07 38.7 5.1 82 3-117 3-86 (106)
73 3nbm_A PTS system, lactose-spe 95.6 0.044 1.5E-06 36.9 6.6 80 3-115 7-86 (108)
74 2l2q_A PTS system, cellobiose- 95.4 0.024 8E-07 38.2 4.7 56 4-80 6-61 (109)
75 3rht_A (gatase1)-like protein; 94.8 0.11 3.7E-06 40.6 7.5 73 2-96 4-76 (259)
76 3kkl_A Probable chaperone prot 94.4 0.087 3E-06 40.7 6.2 107 2-116 3-140 (244)
77 1vkr_A Mannitol-specific PTS s 93.9 0.064 2.2E-06 37.1 4.2 35 2-37 13-48 (125)
78 1u9c_A APC35852; structural ge 92.4 0.22 7.7E-06 37.5 5.6 108 1-116 4-131 (224)
79 4gud_A Imidazole glycerol phos 92.4 0.15 5E-06 38.2 4.4 46 1-76 1-46 (211)
80 4gdh_A DJ-1, uncharacterized p 92.2 0.13 4.4E-06 38.2 3.9 135 2-145 4-151 (194)
81 3l3b_A ES1 family protein; ssg 91.9 0.3 1E-05 37.6 5.8 41 1-42 22-65 (242)
82 4e5v_A Putative THUA-like prot 91.8 2.1 7E-05 33.7 10.5 87 4-115 6-94 (281)
83 1ka9_H Imidazole glycerol phos 91.7 0.3 1E-05 36.2 5.4 49 1-79 1-49 (200)
84 3ot1_A 4-methyl-5(B-hydroxyeth 90.1 0.14 4.7E-06 38.4 2.2 102 1-117 8-114 (208)
85 3efe_A THIJ/PFPI family protei 88.7 0.9 3.1E-05 33.9 5.8 101 2-116 5-114 (212)
86 2ab0_A YAJL; DJ-1/THIJ superfa 88.6 0.23 8E-06 37.0 2.5 104 1-117 1-109 (205)
87 4e08_A DJ-1 beta; flavodoxin-l 88.6 0.29 9.8E-06 35.9 2.9 100 1-116 4-109 (190)
88 3m3p_A Glutamine amido transfe 88.5 1.6 5.3E-05 33.7 7.2 55 2-79 3-58 (250)
89 3n7t_A Macrophage binding prot 87.2 1.2 4E-05 34.4 5.8 107 2-116 9-147 (247)
90 4huj_A Uncharacterized protein 87.2 0.54 1.8E-05 35.3 3.8 79 2-97 23-102 (220)
91 2pv7_A T-protein [includes: ch 86.9 2.2 7.5E-05 33.5 7.4 67 1-97 20-86 (298)
92 2rk3_A Protein DJ-1; parkinson 86.5 0.91 3.1E-05 33.4 4.6 101 1-116 2-108 (197)
93 3g0o_A 3-hydroxyisobutyrate de 85.2 9.4 0.00032 29.8 10.3 116 3-146 8-128 (303)
94 2a9v_A GMP synthase; structura 85.2 1.5 5.2E-05 32.7 5.4 49 3-78 14-62 (212)
95 3qvo_A NMRA family protein; st 85.1 4.1 0.00014 30.4 7.9 30 66-97 84-113 (236)
96 3l4e_A Uncharacterized peptida 85.0 1.5 5.1E-05 32.8 5.2 23 66-92 75-97 (206)
97 1wl8_A GMP synthase [glutamine 84.8 4.5 0.00015 29.3 7.7 31 5-41 3-33 (189)
98 1qv9_A F420-dependent methylen 84.7 5.5 0.00019 30.5 8.0 98 1-117 2-101 (283)
99 2gk3_A Putative cytoplasmic pr 84.6 1.5 5.2E-05 33.8 5.2 14 65-78 72-85 (256)
100 2iuf_A Catalase; oxidoreductas 84.2 2.5 8.6E-05 37.5 6.9 94 3-117 530-642 (688)
101 3f5d_A Protein YDEA; unknow pr 84.2 1.2 4E-05 33.2 4.3 98 2-116 3-102 (206)
102 1vhq_A Enhancing lycopene bios 84.2 1.8 6.1E-05 32.7 5.4 134 2-143 6-177 (232)
103 1rw7_A YDR533CP; alpha-beta sa 83.6 1.8 6.1E-05 33.0 5.2 42 68-116 96-140 (243)
104 3ius_A Uncharacterized conserv 83.1 2.8 9.4E-05 32.2 6.2 86 1-97 4-89 (286)
105 1t0b_A THUA-like protein; treh 82.7 6.2 0.00021 30.3 8.0 60 20-96 34-94 (252)
106 3c24_A Putative oxidoreductase 82.4 2.6 8.9E-05 32.7 5.9 79 1-97 10-88 (286)
107 3doj_A AT3G25530, dehydrogenas 82.1 13 0.00044 29.1 9.9 118 2-146 21-141 (310)
108 1fy2_A Aspartyl dipeptidase; s 81.9 3.4 0.00012 31.2 6.2 24 66-93 75-98 (229)
109 2qv7_A Diacylglycerol kinase D 81.3 5.6 0.00019 31.8 7.6 39 2-41 24-64 (337)
110 1qdl_B Protein (anthranilate s 80.7 13 0.00046 26.9 9.0 50 5-80 4-56 (195)
111 3noq_A THIJ/PFPI family protei 80.6 1.4 4.9E-05 33.4 3.6 89 1-97 4-94 (231)
112 3d54_D Phosphoribosylformylgly 79.5 2.5 8.6E-05 31.1 4.7 33 1-39 1-34 (213)
113 2khp_A Glutaredoxin; thioredox 79.5 3.8 0.00013 25.6 4.9 36 1-42 4-40 (92)
114 4eg0_A D-alanine--D-alanine li 79.0 6.5 0.00022 30.8 7.2 41 1-42 12-55 (317)
115 3r6d_A NAD-dependent epimerase 78.9 7.3 0.00025 28.5 7.1 43 66-118 69-111 (221)
116 2iuy_A Avigt4, glycosyltransfe 78.7 2.8 9.4E-05 33.0 4.9 40 2-42 3-57 (342)
117 3s40_A Diacylglycerol kinase; 78.7 6.6 0.00022 30.9 7.1 40 2-42 8-49 (304)
118 1oi4_A Hypothetical protein YH 78.4 2.8 9.6E-05 30.6 4.6 100 1-116 22-127 (193)
119 2nv0_A Glutamine amidotransfer 78.3 3.2 0.00011 30.3 4.9 12 67-78 35-46 (196)
120 3qha_A Putative oxidoreductase 77.8 22 0.00076 27.5 12.0 116 3-146 16-131 (296)
121 1iow_A DD-ligase, DDLB, D-ALA\ 76.6 3.6 0.00012 31.9 5.0 42 1-43 1-45 (306)
122 3gt0_A Pyrroline-5-carboxylate 76.6 2.1 7.2E-05 32.5 3.5 80 1-97 1-84 (247)
123 3ups_A Iojap-like protein; PSI 76.3 5.2 0.00018 27.8 5.1 59 14-96 17-75 (136)
124 3l7n_A Putative uncharacterize 75.7 6 0.00021 29.8 5.9 52 4-78 2-53 (236)
125 3uk7_A Class I glutamine amido 75.4 3.4 0.00012 33.8 4.7 105 2-116 12-130 (396)
126 1n57_A Chaperone HSP31, protei 75.4 8.1 0.00028 30.3 6.7 42 68-116 143-187 (291)
127 3gg2_A Sugar dehydrogenase, UD 75.4 25 0.00086 29.3 10.1 31 67-97 75-109 (450)
128 2id1_A Hypothetical protein; a 75.2 5.1 0.00018 27.6 4.8 57 16-96 3-59 (130)
129 2h78_A Hibadh, 3-hydroxyisobut 75.2 24 0.00083 27.2 9.5 117 2-146 3-123 (302)
130 3lwz_A 3-dehydroquinate dehydr 75.1 9.3 0.00032 27.0 6.2 78 2-96 7-98 (153)
131 1o1y_A Conserved hypothetical 74.8 5.9 0.0002 30.0 5.7 52 4-78 14-65 (239)
132 3pdu_A 3-hydroxyisobutyrate de 74.5 27 0.00092 26.8 12.1 115 3-146 2-121 (287)
133 3ic4_A Glutaredoxin (GRX-1); s 74.5 3.7 0.00013 25.6 3.8 37 1-42 10-46 (92)
134 2fgx_A Putative thioredoxin; N 73.2 5.9 0.0002 26.2 4.6 38 4-42 30-68 (107)
135 3fse_A Two-domain protein cont 73.0 3.7 0.00013 33.6 4.2 100 1-116 9-114 (365)
136 2o5a_A BH1328 protein; BHR21, 72.4 5.1 0.00017 27.4 4.2 57 16-96 3-59 (125)
137 2klx_A Glutaredoxin; thioredox 71.7 4.9 0.00017 24.9 3.8 35 1-41 4-39 (89)
138 2qs7_A Uncharacterized protein 71.6 7.5 0.00025 27.0 5.1 40 1-41 6-45 (144)
139 3i83_A 2-dehydropantoate 2-red 71.3 6.2 0.00021 31.1 5.2 19 65-83 65-84 (320)
140 2vpi_A GMP synthase; guanine m 70.7 11 0.00036 28.2 6.1 34 3-42 25-58 (218)
141 1gpw_B Amidotransferase HISH; 70.0 9.7 0.00033 27.7 5.7 45 4-79 2-51 (201)
142 3uk7_A Class I glutamine amido 69.8 5.2 0.00018 32.7 4.5 104 1-116 204-323 (396)
143 3ew7_A LMO0794 protein; Q8Y8U8 69.5 11 0.00038 27.2 6.0 45 66-116 57-104 (221)
144 1t1v_A SH3BGRL3, SH3 domain-bi 69.5 9.1 0.00031 24.0 4.8 37 2-42 1-42 (93)
145 3dhn_A NAD-dependent epimerase 69.4 6.1 0.00021 28.9 4.6 88 2-96 4-99 (227)
146 3mc3_A DSRE/DSRF-like family p 68.4 14 0.00049 25.1 6.0 41 1-42 14-56 (134)
147 3pu6_A Uncharacterized protein 68.0 14 0.00048 26.1 6.0 67 1-90 1-74 (157)
148 2gek_A Phosphatidylinositol ma 68.0 8 0.00027 30.8 5.3 41 2-43 20-63 (406)
149 3abi_A Putative uncharacterize 68.0 3.7 0.00013 33.2 3.2 84 3-96 17-101 (365)
150 3r5x_A D-alanine--D-alanine li 66.7 14 0.00048 28.6 6.3 39 3-42 4-45 (307)
151 1wwj_A Circadian clock protein 66.6 14 0.00048 24.4 5.2 70 5-97 9-81 (105)
152 3c48_A Predicted glycosyltrans 66.6 5.8 0.0002 32.2 4.2 40 2-42 20-69 (438)
153 1u0t_A Inorganic polyphosphate 64.8 6.8 0.00023 30.9 4.1 36 2-38 4-39 (307)
154 1nho_A Probable thioredoxin; b 64.4 4.3 0.00015 24.4 2.4 42 1-42 1-43 (85)
155 3ic5_A Putative saccharopine d 64.4 4.8 0.00016 26.0 2.8 14 67-80 66-79 (118)
156 2cvz_A Dehydrogenase, 3-hydrox 64.1 42 0.0014 25.5 8.6 65 66-145 51-115 (289)
157 3ewn_A THIJ/PFPI family protei 63.4 11 0.00039 28.8 5.0 100 1-115 22-125 (253)
158 3h2s_A Putative NADH-flavin re 63.1 17 0.00057 26.4 5.9 44 66-116 58-106 (224)
159 2k8s_A Thioredoxin; dimer, str 62.8 20 0.00069 21.4 5.4 38 4-42 3-40 (80)
160 2fex_A Conserved hypothetical 62.8 2 6.9E-05 31.2 0.6 40 70-116 63-103 (188)
161 3cne_A Putative protease I; st 62.8 19 0.00064 25.4 5.9 42 68-116 64-113 (175)
162 2ew2_A 2-dehydropantoate 2-red 62.0 5.8 0.0002 30.8 3.3 24 68-97 72-95 (316)
163 3ttv_A Catalase HPII; heme ori 61.4 12 0.0004 33.6 5.3 100 3-118 601-703 (753)
164 2c92_A 6,7-dimethyl-8-ribityll 61.2 31 0.0011 24.5 6.6 40 3-43 18-59 (160)
165 2fg5_A RAB-22B, RAS-related pr 60.6 41 0.0014 23.6 7.9 75 65-143 90-164 (192)
166 3ej6_A Catalase-3; heme, hydro 60.0 19 0.00065 31.9 6.3 92 3-117 538-640 (688)
167 2x6q_A Trehalose-synthase TRET 60.0 17 0.00058 29.2 5.8 39 3-42 41-80 (416)
168 3lfh_A Manxa, phosphotransfera 59.3 37 0.0013 23.5 6.7 82 2-94 1-84 (144)
169 3tw8_B RAS-related protein RAB 59.1 40 0.0014 23.0 7.8 47 65-116 76-122 (181)
170 3tkl_A RAS-related protein RAB 58.6 41 0.0014 23.4 7.2 48 65-116 83-130 (196)
171 2fek_A Low molecular weight pr 58.4 47 0.0016 23.6 9.1 77 1-80 21-105 (167)
172 2gf9_A RAS-related protein RAB 57.9 45 0.0015 23.2 10.6 48 65-116 89-136 (189)
173 2g2c_A Putative molybdenum cof 57.7 16 0.00055 26.0 4.7 65 1-78 4-77 (167)
174 2r60_A Glycosyl transferase, g 57.6 13 0.00045 30.8 4.9 39 3-42 8-60 (499)
175 2i0f_A 6,7-dimethyl-8-ribityll 57.3 38 0.0013 24.0 6.5 39 4-43 14-53 (157)
176 3llv_A Exopolyphosphatase-rela 57.1 6.6 0.00023 26.6 2.5 34 2-42 6-39 (141)
177 1yj8_A Glycerol-3-phosphate de 57.1 24 0.00082 28.3 6.3 26 66-97 99-124 (375)
178 3fro_A GLGA glycogen synthase; 56.9 13 0.00043 29.9 4.5 38 3-41 3-44 (439)
179 2b99_A Riboflavin synthase; lu 56.7 10 0.00035 27.0 3.4 39 1-42 1-41 (156)
180 4dkx_A RAS-related protein RAB 56.4 36 0.0012 25.1 6.7 134 4-143 15-154 (216)
181 3ju3_A Probable 2-oxoacid ferr 56.2 30 0.001 22.9 5.7 69 5-91 16-85 (118)
182 3r75_A Anthranilate/para-amino 56.1 34 0.0012 30.1 7.3 50 4-81 448-498 (645)
183 1cfz_A Hydrogenase 2 maturatio 56.1 39 0.0013 23.8 6.6 67 4-89 2-74 (162)
184 2lqo_A Putative glutaredoxin R 55.9 19 0.00066 22.8 4.4 37 1-42 1-38 (92)
185 1ego_A Glutaredoxin; electron 55.4 18 0.00061 21.6 4.2 39 4-42 2-40 (85)
186 3l6d_A Putative oxidoreductase 55.3 37 0.0013 26.4 6.9 117 2-146 9-127 (306)
187 3u80_A 3-dehydroquinate dehydr 54.8 40 0.0014 23.7 6.1 75 2-92 4-91 (151)
188 2wmy_A WZB, putative acid phos 54.8 50 0.0017 22.8 9.3 77 1-80 7-91 (150)
189 1z0f_A RAB14, member RAS oncog 54.2 38 0.0013 23.1 6.3 75 65-143 82-156 (179)
190 1g16_A RAS-related protein SEC 53.7 36 0.0012 22.9 6.1 49 64-116 69-117 (170)
191 1w4r_A Thymidine kinase; type 53.7 29 0.00099 25.5 5.6 100 2-116 19-126 (195)
192 3ax6_A Phosphoribosylaminoimid 53.4 26 0.00088 28.1 5.9 34 2-42 1-34 (380)
193 3hn2_A 2-dehydropantoate 2-red 53.4 29 0.001 27.0 6.0 18 65-82 64-81 (312)
194 3cpj_B GTP-binding protein YPT 52.7 52 0.0018 23.8 7.1 49 64-116 79-127 (223)
195 2vrn_A Protease I, DR1199; cys 52.5 16 0.00053 26.2 4.0 101 3-116 10-117 (190)
196 2iw1_A Lipopolysaccharide core 51.9 14 0.00049 28.9 4.0 37 4-41 2-40 (374)
197 3ged_A Short-chain dehydrogena 51.1 24 0.00083 26.8 5.0 36 2-42 1-36 (247)
198 3rss_A Putative uncharacterize 51.0 52 0.0018 27.9 7.5 88 3-97 53-149 (502)
199 3g17_A Similar to 2-dehydropan 50.9 4.6 0.00016 31.5 0.9 13 69-81 61-73 (294)
200 2c4w_A 3-dehydroquinate dehydr 50.8 58 0.002 23.5 6.5 80 1-97 9-104 (176)
201 4dll_A 2-hydroxy-3-oxopropiona 50.7 71 0.0024 24.9 7.9 115 3-146 32-150 (320)
202 1f0k_A MURG, UDP-N-acetylgluco 50.4 24 0.00083 27.5 5.2 38 3-42 7-44 (364)
203 2wja_A Putative acid phosphata 50.4 65 0.0022 22.9 8.4 77 1-80 25-109 (168)
204 2ywj_A Glutamine amidotransfer 50.3 22 0.00076 25.3 4.5 12 67-78 34-45 (186)
205 2bon_A Lipid kinase; DAG kinas 50.2 46 0.0016 26.3 6.8 38 2-41 29-66 (332)
206 3ggo_A Prephenate dehydrogenas 50.1 90 0.0031 24.4 11.5 15 67-81 91-105 (314)
207 1ky3_A GTP-binding protein YPT 49.9 41 0.0014 23.0 5.9 51 66-116 77-127 (182)
208 4ffl_A PYLC; amino acid, biosy 48.5 19 0.00064 28.7 4.2 34 2-42 1-34 (363)
209 1xea_A Oxidoreductase, GFO/IDH 47.7 30 0.001 27.1 5.2 14 69-82 62-75 (323)
210 1yb4_A Tartronic semialdehyde 47.7 89 0.003 23.7 11.5 115 2-145 3-121 (295)
211 3bed_A PTS system, IIA compone 47.0 48 0.0016 22.7 5.7 73 3-89 6-79 (142)
212 1rzu_A Glycogen synthase 1; gl 47.0 23 0.00078 29.1 4.7 37 4-41 2-43 (485)
213 1ur5_A Malate dehydrogenase; o 47.0 21 0.0007 28.1 4.2 16 65-80 65-80 (309)
214 3cwc_A Putative glycerate kina 47.0 17 0.00058 29.8 3.7 40 3-42 4-46 (383)
215 2qzs_A Glycogen synthase; glyc 47.0 22 0.00074 29.3 4.5 37 4-41 2-43 (485)
216 1uqr_A 3-dehydroquinate dehydr 46.8 73 0.0025 22.4 6.7 80 2-97 1-93 (154)
217 2efe_B Small GTP-binding prote 46.6 66 0.0023 21.9 8.9 75 65-143 79-153 (181)
218 2ywd_A Glutamine amidotransfer 46.4 23 0.00078 25.3 4.1 48 1-79 1-48 (191)
219 4e12_A Diketoreductase; oxidor 46.2 30 0.001 26.6 5.0 15 67-81 82-96 (283)
220 3cwq_A Para family chromosome 46.1 81 0.0028 22.7 12.2 27 176-202 178-205 (209)
221 4ezb_A Uncharacterized conserv 46.1 28 0.00097 27.3 4.9 71 1-81 23-98 (317)
222 3a9s_A D-arabinose isomerase; 46.0 51 0.0017 28.7 6.7 57 70-141 84-140 (595)
223 3ohs_X Trans-1,2-dihydrobenzen 46.0 16 0.00054 28.8 3.4 82 1-94 1-88 (334)
224 2o52_A RAS-related protein RAB 45.6 77 0.0026 22.3 8.6 48 65-116 92-139 (200)
225 1jx7_A Hypothetical protein YC 45.6 35 0.0012 22.0 4.7 40 3-42 2-44 (117)
226 1e4e_A Vancomycin/teicoplanin 45.1 37 0.0013 26.8 5.5 39 3-42 4-45 (343)
227 1fo5_A Thioredoxin; disulfide 44.9 28 0.00097 20.5 3.8 42 1-42 1-44 (85)
228 2iss_D Glutamine amidotransfer 44.8 44 0.0015 24.3 5.5 44 4-78 22-65 (208)
229 2a5j_A RAS-related protein RAB 44.6 77 0.0026 22.0 10.4 49 64-116 87-135 (191)
230 3hgm_A Universal stress protei 43.7 30 0.001 23.0 4.2 41 1-43 1-41 (147)
231 3fz4_A Putative arsenate reduc 43.2 61 0.0021 21.5 5.6 34 6-44 5-39 (120)
232 1w85_B Pyruvate dehydrogenase 43.0 51 0.0018 26.0 6.0 70 13-96 209-279 (324)
233 4gbj_A 6-phosphogluconate dehy 43.0 60 0.0021 25.2 6.3 119 1-147 4-124 (297)
234 2an1_A Putative kinase; struct 42.9 19 0.00064 27.9 3.3 36 2-38 5-40 (292)
235 1vpd_A Tartronate semialdehyde 42.7 23 0.00079 27.2 3.8 23 66-93 57-79 (299)
236 3t1o_A Gliding protein MGLA; G 42.7 80 0.0027 21.7 7.3 68 65-139 92-165 (198)
237 3pef_A 6-phosphogluconate dehy 42.6 1.1E+02 0.0037 23.2 9.9 117 3-146 2-121 (287)
238 3e48_A Putative nucleoside-dip 42.6 1E+02 0.0036 23.0 8.6 47 66-118 61-109 (289)
239 3m2p_A UDP-N-acetylglucosamine 42.6 19 0.00066 27.7 3.4 35 1-41 1-35 (311)
240 2z04_A Phosphoribosylaminoimid 42.4 29 0.00099 27.6 4.5 34 2-42 1-34 (365)
241 1vg8_A RAS-related protein RAB 42.4 40 0.0014 23.8 4.9 52 65-116 75-126 (207)
242 3nq4_A 6,7-dimethyl-8-ribityll 42.2 88 0.003 22.1 6.6 39 4-43 14-57 (156)
243 3re1_A Uroporphyrinogen-III sy 42.1 58 0.002 24.7 6.0 25 66-97 62-86 (269)
244 2d1p_B TUSC, hypothetical UPF0 41.7 42 0.0014 22.1 4.6 39 2-42 1-42 (119)
245 2oil_A CATX-8, RAS-related pro 41.7 85 0.0029 21.7 10.0 48 65-116 92-139 (193)
246 3tri_A Pyrroline-5-carboxylate 41.6 30 0.001 26.6 4.3 67 3-80 4-73 (280)
247 3gj0_A GTP-binding nuclear pro 41.6 34 0.0012 24.7 4.5 46 65-115 82-127 (221)
248 2ahr_A Putative pyrroline carb 41.2 17 0.00058 27.4 2.8 68 3-81 4-71 (259)
249 3cph_A RAS-related protein SEC 41.2 61 0.0021 22.9 5.8 49 64-116 86-134 (213)
250 1z08_A RAS-related protein RAB 40.9 76 0.0026 21.2 6.1 46 67-116 75-120 (170)
251 3soz_A ORF 245 protein, cytopl 40.9 34 0.0012 26.2 4.4 46 20-80 35-80 (248)
252 2i76_A Hypothetical protein; N 40.8 9.1 0.00031 29.5 1.1 15 68-82 56-70 (276)
253 3obb_A Probable 3-hydroxyisobu 40.7 1.3E+02 0.0043 23.4 9.5 121 2-147 3-124 (300)
254 1r7h_A NRDH-redoxin; thioredox 40.7 51 0.0017 18.8 4.7 33 4-42 2-35 (75)
255 3tqi_A GMP synthase [glutamine 40.5 60 0.0021 27.6 6.3 32 3-40 11-42 (527)
256 2bcg_Y Protein YP2, GTP-bindin 40.3 94 0.0032 21.8 13.1 49 64-116 74-122 (206)
257 3gkx_A Putative ARSC family re 40.3 47 0.0016 22.0 4.6 34 6-44 6-40 (120)
258 2raf_A Putative dinucleotide-b 40.0 63 0.0022 23.4 5.7 59 3-97 20-78 (209)
259 2ct6_A SH3 domain-binding glut 39.8 65 0.0022 20.8 5.2 38 4-42 9-48 (111)
260 1ejb_A Lumazine synthase; anal 39.5 1E+02 0.0035 22.0 6.7 40 3-43 17-60 (168)
261 3lzd_A DPH2; diphthamide biosy 39.5 72 0.0025 26.1 6.3 44 3-47 265-309 (378)
262 3fef_A Putative glucosidase LP 39.4 22 0.00076 29.8 3.4 77 3-81 6-86 (450)
263 1r2q_A RAS-related protein RAB 39.3 82 0.0028 21.0 6.0 47 66-116 74-120 (170)
264 3ojo_A CAP5O; rossmann fold, c 39.2 22 0.00075 29.6 3.3 62 4-79 317-383 (431)
265 4hkt_A Inositol 2-dehydrogenas 39.1 17 0.00057 28.6 2.5 13 70-82 63-75 (331)
266 3okp_A GDP-mannose-dependent a 39.0 30 0.001 27.2 4.0 39 2-43 4-45 (394)
267 3ezy_A Dehydrogenase; structur 39.0 24 0.00081 27.9 3.4 13 70-82 64-76 (344)
268 2g2q_A Glutaredoxin-2; thiored 38.9 58 0.002 21.9 4.7 35 2-41 1-36 (124)
269 3oti_A CALG3; calicheamicin, T 38.9 22 0.00076 28.4 3.3 37 2-40 20-56 (398)
270 2a33_A Hypothetical protein; s 38.8 25 0.00084 26.3 3.2 32 2-34 13-47 (215)
271 2p5s_A RAS and EF-hand domain 38.6 19 0.00065 25.6 2.6 47 66-116 96-142 (199)
272 3n8k_A 3-dehydroquinate dehydr 38.5 99 0.0034 22.2 6.1 64 4-82 30-106 (172)
273 2yq5_A D-isomer specific 2-hyd 38.4 68 0.0023 25.7 6.0 12 66-77 41-52 (343)
274 2r85_A PURP protein PF1517; AT 38.4 20 0.00069 27.9 2.9 34 1-42 1-34 (334)
275 3mw8_A Uroporphyrinogen-III sy 38.2 14 0.00048 27.6 1.9 36 66-113 46-81 (240)
276 1z0j_A RAB-22, RAS-related pro 38.1 88 0.003 20.8 7.4 48 65-116 73-120 (170)
277 3mtq_A Putative phosphoenolpyr 38.0 63 0.0022 22.8 5.2 75 1-88 20-94 (159)
278 3uow_A GMP synthetase; structu 37.8 67 0.0023 27.6 6.2 33 3-41 8-40 (556)
279 4fle_A Esterase; structural ge 37.8 30 0.001 24.3 3.6 10 1-10 1-10 (202)
280 3fwz_A Inner membrane protein 37.7 19 0.00066 24.3 2.4 15 67-81 68-82 (140)
281 2ozl_B PDHE1-B, pyruvate dehyd 37.6 83 0.0028 25.0 6.4 69 13-95 224-293 (341)
282 1jmv_A USPA, universal stress 37.4 60 0.002 21.3 4.9 38 1-41 1-39 (141)
283 3tqt_A D-alanine--D-alanine li 37.1 56 0.0019 26.3 5.4 39 4-43 6-47 (372)
284 1u6t_A SH3 domain-binding glut 36.3 60 0.002 21.8 4.6 36 6-42 2-40 (121)
285 1h75_A Glutaredoxin-like prote 36.1 65 0.0022 18.8 4.7 34 4-42 2-35 (81)
286 4e21_A 6-phosphogluconate dehy 36.1 89 0.0031 25.0 6.4 115 3-146 23-141 (358)
287 1jvn_A Glutamine, bifunctional 36.0 39 0.0013 29.0 4.5 50 2-79 4-53 (555)
288 3i12_A D-alanine-D-alanine lig 36.0 66 0.0023 25.6 5.7 40 3-43 4-46 (364)
289 1gsa_A Glutathione synthetase; 36.0 41 0.0014 25.7 4.3 36 1-42 1-42 (316)
290 2h57_A ADP-ribosylation factor 35.9 1.1E+02 0.0036 21.2 6.7 49 65-116 85-135 (190)
291 1u8x_X Maltose-6'-phosphate gl 35.9 11 0.00038 31.8 1.0 76 4-80 30-112 (472)
292 3oy2_A Glycosyltransferase B73 35.8 73 0.0025 25.2 6.0 37 4-42 2-40 (413)
293 3hdj_A Probable ornithine cycl 35.7 24 0.00083 27.9 2.9 17 65-81 178-194 (313)
294 2qgz_A Helicase loader, putati 35.6 86 0.0029 24.4 6.2 68 4-78 153-222 (308)
295 2w70_A Biotin carboxylase; lig 35.6 26 0.00089 28.8 3.2 33 1-40 1-33 (449)
296 2z08_A Universal stress protei 35.5 52 0.0018 21.6 4.3 40 1-42 1-40 (137)
297 3dr3_A N-acetyl-gamma-glutamyl 35.4 58 0.002 26.0 5.1 15 66-80 70-85 (337)
298 1ehi_A LMDDL2, D-alanine:D-lac 35.3 54 0.0018 26.3 5.0 39 3-42 4-46 (377)
299 1ek0_A Protein (GTP-binding pr 35.0 52 0.0018 22.0 4.4 47 65-115 70-116 (170)
300 2i87_A D-alanine-D-alanine lig 34.9 49 0.0017 26.3 4.7 39 3-42 4-45 (364)
301 3rdw_A Putative arsenate reduc 34.8 31 0.001 23.0 2.9 34 6-44 7-41 (121)
302 3lvu_A ABC transporter, peripl 34.7 44 0.0015 24.9 4.2 36 5-41 130-165 (258)
303 3fr7_A Putative ketol-acid red 34.7 72 0.0025 27.3 5.7 16 65-80 116-131 (525)
304 3q3j_B RHO-related GTP-binding 34.4 1.3E+02 0.0043 21.5 6.6 47 65-116 93-140 (214)
305 1umd_B E1-beta, 2-OXO acid deh 34.3 70 0.0024 25.1 5.5 69 13-95 210-279 (324)
306 3h75_A Periplasmic sugar-bindi 34.3 1.6E+02 0.0054 22.7 9.2 39 3-42 4-44 (350)
307 3rg8_A Phosphoribosylaminoimid 34.0 61 0.0021 23.0 4.5 35 1-38 1-35 (159)
308 1z2a_A RAS-related protein RAB 33.9 60 0.0021 21.7 4.6 48 64-116 71-118 (168)
309 2is8_A Molybdopterin biosynthe 33.4 1.1E+02 0.0037 21.4 5.9 59 3-78 2-70 (164)
310 3lkv_A Uncharacterized conserv 33.2 83 0.0028 24.1 5.7 39 3-42 141-179 (302)
311 3ouz_A Biotin carboxylase; str 33.1 26 0.00088 28.8 2.8 34 1-41 5-38 (446)
312 3g79_A NDP-N-acetyl-D-galactos 33.0 87 0.003 26.4 6.0 18 65-82 96-113 (478)
313 3k5i_A Phosphoribosyl-aminoimi 32.8 50 0.0017 26.8 4.5 32 3-42 25-56 (403)
314 3cpt_A Mitogen-activated prote 32.8 29 0.001 24.2 2.5 18 80-97 15-32 (143)
315 1zbd_A Rabphilin-3A; G protein 32.7 1.3E+02 0.0043 21.0 6.9 47 66-116 76-122 (203)
316 3dz8_A RAS-related protein RAB 32.4 90 0.0031 21.6 5.4 47 66-116 91-137 (191)
317 1y81_A Conserved hypothetical 32.2 1.2E+02 0.004 20.5 7.4 56 69-145 68-123 (138)
318 4fzr_A SSFS6; structural genom 31.9 32 0.0011 27.4 3.2 36 3-40 16-51 (398)
319 1qhx_A CPT, protein (chloramph 31.9 46 0.0016 23.0 3.7 27 1-28 1-28 (178)
320 4got_A Methionine-binding lipo 31.9 82 0.0028 24.1 5.2 38 4-43 6-43 (249)
321 3e8x_A Putative NAD-dependent 31.9 1.4E+02 0.0049 21.5 9.0 72 4-82 23-96 (236)
322 4hcj_A THIJ/PFPI domain protei 31.8 24 0.00081 25.4 2.1 99 3-116 8-110 (177)
323 3en0_A Cyanophycinase; serine 31.7 79 0.0027 24.7 5.2 14 65-78 105-118 (291)
324 1pdo_A Mannose permease; phosp 31.7 1.2E+02 0.004 20.4 5.7 77 2-91 1-78 (135)
325 1t2d_A LDH-P, L-lactate dehydr 31.6 38 0.0013 26.8 3.4 69 3-78 5-80 (322)
326 1sy7_A Catalase 1; heme oxidat 31.6 45 0.0015 29.8 4.2 98 3-116 535-637 (715)
327 2c1l_A Restriction endonucleas 31.6 57 0.0019 25.3 4.2 35 4-43 66-103 (358)
328 1q77_A Hypothetical protein AQ 31.6 73 0.0025 20.8 4.5 38 1-41 3-41 (138)
329 2dum_A Hypothetical protein PH 31.6 83 0.0028 21.4 5.0 39 2-42 5-43 (170)
330 2y8e_A RAB-protein 6, GH09086P 31.5 62 0.0021 21.9 4.3 48 65-116 81-128 (179)
331 3qsg_A NAD-binding phosphogluc 31.4 24 0.00082 27.6 2.2 17 66-82 79-95 (312)
332 1ks9_A KPA reductase;, 2-dehyd 31.3 95 0.0032 23.3 5.7 26 65-96 58-83 (291)
333 1via_A Shikimate kinase; struc 31.3 38 0.0013 23.5 3.2 26 1-27 3-28 (175)
334 4es6_A Uroporphyrinogen-III sy 30.8 41 0.0014 25.3 3.4 39 66-113 54-92 (254)
335 3oh8_A Nucleoside-diphosphate 30.6 1.8E+02 0.0063 24.2 7.8 64 3-80 148-211 (516)
336 2fu5_C RAS-related protein RAB 30.4 1.3E+02 0.0044 20.4 9.8 74 66-143 76-149 (183)
337 1g63_A Epidermin modifying enz 30.4 55 0.0019 23.6 3.9 39 106-145 106-144 (181)
338 1f6b_A SAR1; gtpases, N-termin 30.4 1.4E+02 0.0048 20.9 7.6 49 65-116 87-135 (198)
339 1x3s_A RAS-related protein RAB 30.4 1.3E+02 0.0045 20.6 8.9 75 65-143 82-156 (195)
340 3h5l_A Putative branched-chain 30.3 2E+02 0.0069 22.7 10.4 34 3-38 165-198 (419)
341 1v4v_A UDP-N-acetylglucosamine 30.3 47 0.0016 26.0 3.9 37 2-40 5-41 (376)
342 3e5n_A D-alanine-D-alanine lig 30.3 92 0.0032 25.1 5.7 40 3-43 23-65 (386)
343 3idf_A USP-like protein; unive 30.3 86 0.0029 20.3 4.8 11 70-80 101-111 (138)
344 3c5y_A Ribose/galactose isomer 30.2 50 0.0017 25.0 3.6 36 3-41 20-56 (231)
345 1fui_A L-fucose isomerase; ket 30.2 2E+02 0.0069 24.9 7.9 35 70-118 79-113 (591)
346 3k3p_A D-alanine--D-alanine li 30.2 88 0.003 25.3 5.5 40 3-43 38-80 (383)
347 3ay3_A NAD-dependent epimerase 30.1 15 0.00051 27.7 0.8 34 1-40 1-34 (267)
348 3se7_A VANA; alpha-beta struct 30.1 91 0.0031 24.5 5.5 40 3-43 4-46 (346)
349 1s3c_A Arsenate reductase; ARS 30.0 50 0.0017 22.7 3.5 34 6-44 4-38 (141)
350 2h2w_A Homoserine O-succinyltr 29.9 1.6E+02 0.0053 23.3 6.7 84 3-96 48-143 (312)
351 2jmk_A Hypothetical protein TA 29.9 1.1E+02 0.0038 19.5 5.0 34 3-37 75-109 (111)
352 3msz_A Glutaredoxin 1; alpha-b 29.7 89 0.0031 18.4 4.8 32 4-41 5-37 (89)
353 2orv_A Thymidine kinase; TP4A 29.7 1.1E+02 0.0036 23.2 5.5 100 2-116 18-125 (234)
354 1c2y_A Protein (lumazine synth 29.7 89 0.003 22.0 4.7 38 4-42 15-55 (156)
355 3l4b_C TRKA K+ channel protien 29.7 24 0.00083 25.8 1.9 70 4-80 2-75 (218)
356 1gtz_A 3-dehydroquinate dehydr 29.6 1.5E+02 0.0051 20.9 6.2 78 4-97 8-98 (156)
357 2vns_A Metalloreductase steap3 29.6 39 0.0013 24.7 3.1 65 3-81 29-94 (215)
358 3kuu_A Phosphoribosylaminoimid 29.5 1.6E+02 0.0054 21.2 8.2 35 1-38 11-45 (174)
359 1a9x_B Carbamoyl phosphate syn 29.5 2.3E+02 0.0077 23.0 8.6 30 4-41 192-221 (379)
360 1ulz_A Pyruvate carboxylase N- 29.5 32 0.0011 28.3 2.8 33 1-40 1-33 (451)
361 3dah_A Ribose-phosphate pyroph 29.3 67 0.0023 25.5 4.5 58 2-78 5-62 (319)
362 3gra_A Transcriptional regulat 29.2 21 0.00073 26.0 1.5 41 68-116 69-110 (202)
363 3g1w_A Sugar ABC transporter; 29.2 1.8E+02 0.0061 21.7 9.5 36 3-39 5-41 (305)
364 1ys4_A Aspartate-semialdehyde 29.1 1E+02 0.0035 24.6 5.7 12 70-81 83-94 (354)
365 3tsa_A SPNG, NDP-rhamnosyltran 29.1 37 0.0013 26.9 3.1 35 4-40 3-37 (391)
366 3mos_A Transketolase, TK; thia 29.1 1.3E+02 0.0044 26.2 6.6 69 13-95 506-576 (616)
367 3otg_A CALG1; calicheamicin, T 29.0 35 0.0012 27.2 2.9 37 3-41 21-57 (412)
368 1uan_A Hypothetical protein TT 29.0 86 0.003 23.2 4.9 39 2-42 1-39 (227)
369 3l6e_A Oxidoreductase, short-c 29.0 84 0.0029 23.1 4.9 36 1-41 1-36 (235)
370 1e6c_A Shikimate kinase; phosp 28.9 47 0.0016 22.7 3.3 25 1-27 1-26 (173)
371 1kz1_A 6,7-dimethyl-8-ribityll 28.8 1.5E+02 0.0051 21.0 5.8 39 4-43 19-62 (159)
372 2obx_A DMRL synthase 1, 6,7-di 28.8 1.3E+02 0.0046 21.1 5.5 39 4-43 13-55 (157)
373 1to6_A Glycerate kinase; glyce 28.8 42 0.0014 27.4 3.2 39 4-42 2-43 (371)
374 1mjh_A Protein (ATP-binding do 28.6 87 0.003 21.1 4.6 40 1-42 4-43 (162)
375 2b6h_A ADP-ribosylation factor 28.4 1.5E+02 0.0051 20.6 6.5 49 65-116 91-139 (192)
376 4gpa_A Glutamate receptor 4; P 28.4 2.1E+02 0.007 22.1 7.5 38 3-43 131-168 (389)
377 3er6_A Putative transcriptiona 28.3 22 0.00075 26.1 1.4 45 65-116 69-117 (209)
378 3saj_A Glutamate receptor 1; r 28.3 2.1E+02 0.0073 22.3 9.3 35 3-40 129-163 (384)
379 1lss_A TRK system potassium up 28.2 25 0.00085 23.1 1.6 14 68-81 67-80 (140)
380 1t2a_A GDP-mannose 4,6 dehydra 28.2 45 0.0015 26.4 3.4 35 1-41 23-57 (375)
381 1di0_A Lumazine synthase; tran 28.1 1.3E+02 0.0045 21.2 5.4 40 3-43 11-54 (158)
382 3pam_A Transmembrane protein; 28.1 97 0.0033 23.0 5.2 27 14-41 138-164 (259)
383 3rsc_A CALG2; TDP, enediyne, s 28.0 42 0.0014 26.8 3.2 37 2-40 20-56 (415)
384 4gwg_A 6-phosphogluconate dehy 27.9 2.7E+02 0.0092 23.4 8.8 121 3-146 5-129 (484)
385 3h4t_A Glycosyltransferase GTF 27.9 60 0.0021 26.0 4.2 36 4-41 2-37 (404)
386 1weh_A Conserved hypothetical 27.8 64 0.0022 22.9 3.8 30 2-32 1-33 (171)
387 2hjr_A Malate dehydrogenase; m 27.7 52 0.0018 26.0 3.6 70 3-79 15-91 (328)
388 3pdi_A Nitrogenase MOFE cofact 27.6 1.2E+02 0.004 25.5 6.0 36 104-147 329-364 (483)
389 3oow_A Phosphoribosylaminoimid 27.5 86 0.0029 22.4 4.3 35 1-38 4-38 (166)
390 3k96_A Glycerol-3-phosphate de 27.3 1.2E+02 0.0042 24.1 5.9 26 66-97 95-120 (356)
391 3egc_A Putative ribose operon 27.3 1.9E+02 0.0065 21.4 8.4 38 4-42 10-48 (291)
392 2zyd_A 6-phosphogluconate dehy 27.3 87 0.003 26.2 5.1 59 71-145 79-138 (480)
393 1ccw_A Protein (glutamate muta 27.2 68 0.0023 21.7 3.7 27 69-97 53-79 (137)
394 3u1h_A 3-isopropylmalate dehyd 27.2 69 0.0024 26.3 4.3 71 1-81 22-100 (390)
395 3s5j_B Ribose-phosphate pyroph 27.1 57 0.0019 26.0 3.7 58 2-78 1-58 (326)
396 2p4q_A 6-phosphogluconate dehy 27.1 1E+02 0.0035 25.9 5.5 59 71-145 75-134 (497)
397 1xgk_A Nitrogen metabolite rep 27.0 1.2E+02 0.0042 23.8 5.8 32 66-97 69-100 (352)
398 3l0i_B RAS-related protein RAB 27.0 88 0.003 21.9 4.6 48 65-116 100-147 (199)
399 4fyk_A Deoxyribonucleoside 5'- 26.9 63 0.0021 22.7 3.5 32 1-35 1-34 (152)
400 2hy5_B Intracellular sulfur ox 26.6 1.5E+02 0.0052 20.0 5.6 40 2-42 5-46 (136)
401 2dzd_A Pyruvate carboxylase; b 26.5 44 0.0015 27.6 3.1 35 1-42 5-39 (461)
402 1ydh_A AT5G11950; structural g 26.4 54 0.0018 24.4 3.3 32 2-34 9-43 (216)
403 2i2c_A Probable inorganic poly 26.1 80 0.0027 24.1 4.4 30 4-35 2-31 (272)
404 2kok_A Arsenate reductase; bru 26.1 1.3E+02 0.0044 19.6 5.0 32 6-42 7-39 (120)
405 1q7r_A Predicted amidotransfer 26.0 99 0.0034 22.6 4.8 12 67-78 57-68 (219)
406 3ipr_A PTS system, IIA compone 26.0 1.6E+02 0.0056 20.2 6.7 80 2-94 1-81 (150)
407 3ia7_A CALG4; glycosysltransfe 25.7 76 0.0026 24.9 4.4 37 2-40 4-40 (402)
408 3bk2_A RNAse J, metal dependen 25.7 3.1E+02 0.011 23.3 9.7 70 69-144 304-373 (562)
409 2fb9_A D-alanine:D-alanine lig 25.6 1.1E+02 0.0038 23.7 5.2 36 3-42 4-42 (322)
410 3dzc_A UDP-N-acetylglucosamine 25.5 58 0.002 26.3 3.6 37 2-40 25-61 (396)
411 2iya_A OLEI, oleandomycin glyc 25.4 80 0.0027 25.3 4.5 38 2-41 12-49 (424)
412 2qpq_A Protein BUG27; alpha/be 25.3 61 0.0021 25.2 3.6 36 6-41 12-47 (301)
413 1nbw_B Glycerol dehydratase re 25.2 1E+02 0.0035 20.6 4.2 35 7-42 9-43 (117)
414 3reg_A RHO-like small GTPase; 25.1 1.4E+02 0.0049 20.5 5.4 47 65-116 89-136 (194)
415 2bme_A RAB4A, RAS-related prot 25.1 1.6E+02 0.0056 19.9 7.4 73 66-143 78-151 (186)
416 3qyf_A Crispr-associated prote 25.1 1.2E+02 0.0039 24.3 5.1 37 6-43 95-131 (324)
417 2bfd_B 2-oxoisovalerate dehydr 24.9 1.1E+02 0.0037 24.3 5.1 69 13-95 227-297 (342)
418 4bas_A ADP-ribosylation factor 24.7 1.7E+02 0.0059 20.0 7.3 51 66-116 82-136 (199)
419 1c1y_A RAS-related protein RAP 24.6 1.5E+02 0.0053 19.4 5.9 49 65-116 69-117 (167)
420 1t57_A Conserved protein MTH16 24.5 1.1E+02 0.0039 22.5 4.6 27 7-34 25-53 (206)
421 1rvv_A Riboflavin synthase; tr 24.5 1.8E+02 0.0063 20.3 6.0 39 4-43 14-56 (154)
422 1obb_A Maltase, alpha-glucosid 24.5 63 0.0021 27.3 3.7 76 3-80 4-87 (480)
423 2ew1_A RAS-related protein RAB 24.3 1.9E+02 0.0065 20.4 8.5 46 66-115 94-139 (201)
424 1tq8_A Hypothetical protein RV 24.2 1.6E+02 0.0056 19.9 5.5 14 68-81 117-130 (163)
425 3q9l_A Septum site-determining 24.2 1.3E+02 0.0043 22.1 5.2 39 1-42 1-41 (260)
426 1ilo_A Conserved hypothetical 24.1 1.1E+02 0.0036 17.4 4.4 35 6-41 4-38 (77)
427 3st7_A Capsular polysaccharide 23.9 2.4E+02 0.0082 21.9 7.0 54 4-80 2-56 (369)
428 3o21_A Glutamate receptor 3; p 23.8 2.7E+02 0.0092 21.9 8.0 35 3-40 131-165 (389)
429 3l4e_A Uncharacterized peptida 23.7 1.3E+02 0.0044 22.0 4.9 54 81-144 10-63 (206)
430 1ek6_A UDP-galactose 4-epimera 23.7 61 0.0021 25.1 3.3 34 1-40 1-34 (348)
431 3ff4_A Uncharacterized protein 23.6 1.7E+02 0.0057 19.4 5.8 52 71-143 59-110 (122)
432 3db2_A Putative NADPH-dependen 23.5 73 0.0025 25.1 3.8 24 69-94 65-88 (354)
433 2gfq_A UPF0204 protein PH0006; 23.5 2.7E+02 0.0092 21.8 7.2 24 4-27 23-46 (298)
434 3ry3_A Putative solute-binding 23.5 1.3E+02 0.0045 25.2 5.6 36 5-41 362-397 (528)
435 2il1_A RAB12; G-protein, GDP, 23.4 65 0.0022 22.5 3.2 47 66-116 94-140 (192)
436 3rqt_A Putative uncharacterize 23.4 1.3E+02 0.0045 24.9 5.5 36 5-41 330-365 (486)
437 2vdj_A Homoserine O-succinyltr 23.3 1.7E+02 0.0058 22.9 5.8 84 3-96 36-131 (301)
438 3hyw_A Sulfide-quinone reducta 23.3 54 0.0019 26.7 3.1 37 1-42 1-37 (430)
439 4fak_A Ribosomal RNA large sub 23.2 2E+02 0.0069 20.3 9.6 100 1-119 4-115 (163)
440 2fi9_A Outer membrane protein; 23.2 74 0.0025 21.4 3.3 26 71-96 69-94 (128)
441 2f5x_A BUGD; periplasmic bindi 23.1 60 0.0021 25.5 3.2 36 6-41 21-56 (312)
442 3eeq_A Putative cobalamin bios 23.1 1.1E+02 0.0039 24.4 4.8 55 4-80 10-64 (336)
443 1nks_A Adenylate kinase; therm 23.0 1.6E+02 0.0053 20.2 5.2 35 4-40 2-37 (194)
444 3t66_A Nickel ABC transporter 22.9 1.3E+02 0.0044 25.0 5.4 37 5-42 332-368 (496)
445 2g5c_A Prephenate dehydrogenas 22.9 69 0.0024 24.2 3.5 16 66-81 57-73 (281)
446 1hqk_A 6,7-dimethyl-8-ribityll 22.9 2E+02 0.0068 20.1 6.7 39 4-43 14-56 (154)
447 2hup_A RAS-related protein RAB 22.7 1.6E+02 0.0055 20.6 5.3 47 66-116 97-143 (201)
448 1z0s_A Probable inorganic poly 22.7 2E+02 0.0068 22.2 6.0 28 4-37 31-58 (278)
449 3exr_A RMPD (hexulose-6-phosph 22.7 34 0.0012 25.5 1.6 28 70-97 189-217 (221)
450 3p2o_A Bifunctional protein fo 22.6 1E+02 0.0034 24.1 4.3 52 3-80 161-213 (285)
451 3mz0_A Inositol 2-dehydrogenas 22.5 1.2E+02 0.0042 23.6 5.0 13 70-82 66-78 (344)
452 2npb_A Selenoprotein W; struct 22.3 1.5E+02 0.0052 18.9 4.5 28 1-28 1-31 (96)
453 1g3q_A MIND ATPase, cell divis 22.3 1.6E+02 0.0053 21.2 5.3 39 1-42 1-41 (237)
454 2dvz_A BUGE, putative exported 22.2 65 0.0022 25.3 3.2 36 6-41 23-58 (314)
455 2orw_A Thymidine kinase; TMTK, 22.1 1.8E+02 0.0061 20.5 5.4 36 1-38 1-37 (184)
456 1wms_A RAB-9, RAB9, RAS-relate 22.1 80 0.0027 21.3 3.4 51 66-116 75-125 (177)
457 3l21_A DHDPS, dihydrodipicolin 22.1 1.4E+02 0.0049 23.2 5.2 40 69-114 109-148 (304)
458 1n7h_A GDP-D-mannose-4,6-dehyd 22.1 68 0.0023 25.3 3.4 35 1-41 27-61 (381)
459 3lwb_A D-alanine--D-alanine li 21.9 1.6E+02 0.0054 23.5 5.6 39 3-42 11-52 (373)
460 4e5s_A MCCFLIKE protein (BA_56 21.9 2.8E+02 0.0097 21.8 7.0 40 105-144 10-49 (331)
461 2gm2_A Conserved hypothetical 21.8 82 0.0028 21.4 3.3 27 70-96 64-90 (132)
462 1fov_A Glutaredoxin 3, GRX3; a 21.7 1.3E+02 0.0043 17.4 4.7 31 7-42 4-35 (82)
463 3jy6_A Transcriptional regulat 21.7 2.4E+02 0.0083 20.6 9.6 38 4-42 9-47 (276)
464 1kht_A Adenylate kinase; phosp 21.7 89 0.003 21.6 3.6 39 1-41 1-40 (192)
465 3dii_A Short-chain dehydrogena 21.6 1.5E+02 0.005 21.8 5.0 35 3-42 2-36 (247)
466 3d1l_A Putative NADP oxidoredu 21.6 68 0.0023 24.0 3.1 15 67-81 65-79 (266)
467 2nqt_A N-acetyl-gamma-glutamyl 21.5 1.8E+02 0.0063 23.2 5.8 17 65-81 75-91 (352)
468 3loq_A Universal stress protei 21.5 2.6E+02 0.0088 20.9 6.8 39 3-43 171-209 (294)
469 3rft_A Uronate dehydrogenase; 21.4 1.2E+02 0.0042 22.5 4.6 37 1-42 1-37 (267)
470 1zgh_A Methionyl-tRNA formyltr 21.4 2.3E+02 0.0077 21.7 6.0 36 3-42 31-66 (260)
471 1t35_A Hypothetical protein YV 21.3 1.1E+02 0.0039 22.0 4.2 32 2-34 1-35 (191)
472 3qbc_A 2-amino-4-hydroxy-6-hyd 21.2 1.7E+02 0.0058 20.7 4.9 39 2-42 4-42 (161)
473 2ywb_A GMP synthase [glutamine 21.2 1.9E+02 0.0067 24.2 6.2 31 5-41 2-32 (503)
474 4fs3_A Enoyl-[acyl-carrier-pro 21.2 1.8E+02 0.0063 21.5 5.6 36 3-43 6-43 (256)
475 3clv_A RAB5 protein, putative; 21.1 2E+02 0.0069 19.5 10.9 72 65-143 111-182 (208)
476 3flk_A Tartrate dehydrogenase/ 21.1 3.3E+02 0.011 22.0 7.9 69 3-81 6-83 (364)
477 3tpc_A Short chain alcohol deh 21.1 1.6E+02 0.0053 21.7 5.1 35 4-43 8-42 (257)
478 3ngx_A Bifunctional protein fo 21.1 1.1E+02 0.0037 23.8 4.2 52 3-80 151-203 (276)
479 4amg_A Snogd; transferase, pol 21.0 59 0.002 25.7 2.8 36 4-41 24-59 (400)
480 3orf_A Dihydropteridine reduct 21.0 1.5E+02 0.0053 21.7 5.1 36 2-42 21-56 (251)
481 3td9_A Branched chain amino ac 20.9 2.1E+02 0.007 22.1 6.0 34 3-37 150-183 (366)
482 2jjm_A Glycosyl transferase, g 20.9 1.2E+02 0.0041 23.7 4.7 38 3-41 16-53 (394)
483 3s3t_A Nucleotide-binding prot 20.8 1.5E+02 0.0051 19.3 4.6 40 1-42 4-43 (146)
484 3ehe_A UDP-glucose 4-epimerase 20.8 1.1E+02 0.0038 23.2 4.3 15 65-79 58-72 (313)
485 2x77_A ADP-ribosylation factor 20.8 2.1E+02 0.0071 19.5 7.9 48 66-116 85-132 (189)
486 3tfo_A Putative 3-oxoacyl-(acy 20.7 1.3E+02 0.0044 22.6 4.6 35 2-41 3-37 (264)
487 3us8_A Isocitrate dehydrogenas 20.7 33 0.0011 28.5 1.2 76 12-96 38-129 (427)
488 4a26_A Putative C-1-tetrahydro 20.6 94 0.0032 24.5 3.8 15 66-80 206-220 (300)
489 3kkq_A RAS-related protein M-R 20.6 1.9E+02 0.0065 19.5 5.3 49 65-116 84-132 (183)
490 2iyf_A OLED, oleandomycin glyc 20.5 68 0.0023 25.7 3.1 38 2-41 7-44 (430)
491 3vps_A TUNA, NAD-dependent epi 20.5 62 0.0021 24.6 2.8 34 2-41 7-40 (321)
492 3m9w_A D-xylose-binding peripl 20.5 2.7E+02 0.0094 20.8 7.5 37 4-41 4-41 (313)
493 1hyq_A MIND, cell division inh 20.4 1.8E+02 0.0061 21.4 5.3 39 1-42 1-41 (263)
494 2ydy_A Methionine adenosyltran 20.4 71 0.0024 24.3 3.1 33 1-39 1-33 (315)
495 1gpm_A GMP synthetase, XMP ami 20.4 2.7E+02 0.0092 23.5 6.9 32 3-41 8-40 (525)
496 4gci_A Glutathione S-transfera 20.3 1E+02 0.0035 22.0 3.8 28 8-40 6-33 (211)
497 1gwn_A RHO-related GTP-binding 20.3 2.3E+02 0.008 19.9 6.2 46 66-116 95-141 (205)
498 1o5k_A DHDPS, dihydrodipicolin 20.3 1.7E+02 0.0057 22.8 5.2 29 69-97 106-134 (306)
499 2jba_A Phosphate regulon trans 20.1 1.4E+02 0.0046 18.6 4.1 30 1-36 1-30 (127)
500 4dzz_A Plasmid partitioning pr 20.1 2.3E+02 0.0077 19.7 13.3 34 4-42 2-40 (206)
No 1
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=100.00 E-value=9.7e-34 Score=216.87 Aligned_cols=195 Identities=40% Similarity=0.624 Sum_probs=143.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|||+|++|||+++|+.+++++++ .|++++++++.+. +.+|..+..|.+++..|....+++.+||+|||+||+|
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 4599999999999999999999999988 4899999999886 4444433233222222333478899999999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGG 161 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
|+++|+++|+|||++...|....++||++++|+++|+..++...++..+...|...|+.+++..+..+.. ...++.+
T Consensus 83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~---~~~~~~~ 159 (200)
T 2a5l_A 83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPAL---LETRGGG 159 (200)
T ss_dssp TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC---------------
T ss_pred ccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCccc---cccccCC
Confidence 9999999999999987655445789999999999998766655567788888889999999876542110 0012234
Q ss_pred CCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 162 SPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 162 ~~~g~~~~~~-~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
..+|.+.+.+ +++..|+++++++|+++|++|++.++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 160 TPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566666543 455689999999999999999999988753
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=100.00 E-value=2.4e-33 Score=214.32 Aligned_cols=194 Identities=52% Similarity=0.862 Sum_probs=150.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEEcCCCCchhHhhhcCCCCCCCC-CCCChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAAS-VEGVEAKLWQVPETLSEDVLGKMGAGPKSDV-PTITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~-~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~aD~iiigs 78 (203)
|| ||+|||+|++|||+++|+.|++++++ . |++++++++.+..+ +|..+.... +++. +....+++.+||+|||+|
T Consensus 1 Mm-kilii~~S~~g~t~~la~~i~~~l~~~~-g~~v~~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~aD~ii~gs 76 (198)
T 3b6i_A 1 MA-KVLVLYYSMYGHIETMARAVAEGASKVD-GAEVVVKRVPETMP-PQLFEKAGG-KTQTAPVATPQELADYDAIIFGT 76 (198)
T ss_dssp -C-EEEEEECCSSSHHHHHHHHHHHHHHTST-TCEEEEEECCCCSC-HHHHHHTTC-CCCCSCBCCGGGGGGCSEEEEEE
T ss_pred CC-eEEEEEeCCCcHHHHHHHHHHHHHhhcC-CCEEEEEEccccCc-hhhhhhccc-ccccCchhhHHHHHHCCEEEEEe
Confidence 54 99999999999999999999999986 4 88999999998743 343221111 2221 222367899999999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccc
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
|+||+++|+++|+|||++...|....++||++++|+++|+. ++...++..+...+..+|+.+++.++..+ .......+
T Consensus 77 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~~~~~~-~~~~~~~~ 154 (198)
T 3b6i_A 77 PTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPIGYAAQ-ELFDVSQV 154 (198)
T ss_dssp EEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCCTTCSG-GGGCCSSC
T ss_pred ChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECCCCCcc-cccccccc
Confidence 99999999999999999876554457899999999999986 45555678888889999999998776421 00111123
Q ss_pred cCCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028847 159 KGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLK 200 (203)
Q Consensus 159 ~~~~~~g~~~~~~-~~~~~p~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
+++.++|.+.+.+ +++..|+++++++|+++|++|++.++++.
T Consensus 155 ~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~ 197 (198)
T 3b6i_A 155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLN 197 (198)
T ss_dssp CCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788877765 55578999999999999999999998875
No 3
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=100.00 E-value=5.1e-32 Score=209.25 Aligned_cols=191 Identities=36% Similarity=0.491 Sum_probs=145.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCC------CCCCCCChhhhhccCeEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPK------SDVPTITPNELAEADGIL 75 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~aD~ii 75 (203)
||||+|||+|++|||+++|+.|++++++ .|++++++++.+. ..+|..+...... ++.+....+++.+||+||
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRET-APQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCC-SCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhc-CCCEEEEEecccc-ccchhhhcccccccccccccchhHHHHHHHHHCCEEE
Confidence 4599999999999999999999999988 4899999999987 5444322100000 122233578999999999
Q ss_pred EecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcc
Q 028847 76 LGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEM 155 (203)
Q Consensus 76 igsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~ 155 (203)
|+||+||+++|++||+|||++...|....++||++++|+++|+..++...++..+...+...|+.+++.++.++. .
T Consensus 84 ~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~----~ 159 (211)
T 1ydg_A 84 FSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEV----I 159 (211)
T ss_dssp EEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSHH----H
T ss_pred EEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCChh----h
Confidence 999999999999999999998755545678999999999999876665566788888999999999987654100 0
Q ss_pred ccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 156 EKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
-.+.++.+|.+...+. ..|+++++++|+++|++|++.+++++.
T Consensus 160 -~~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~~ 202 (211)
T 1ydg_A 160 -FKSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLLE 202 (211)
T ss_dssp -HHTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0123455665444211 468999999999999999998887653
No 4
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-31 Score=203.72 Aligned_cols=192 Identities=38% Similarity=0.585 Sum_probs=145.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCC-CCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDV-PTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~aD~iiigsP~ 80 (203)
||||+|||+| +|||+++|+.+++++++. |++++++++.+. +++|..+....+.++. +....+++.+||+|||+||+
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~-g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~ 80 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEA-GAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPT 80 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHH-SCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEEC
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhC-CCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEECCc
Confidence 4699999999 999999999999999874 889999999987 6665543211111221 22236789999999999999
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
||+++|++||+|||++..+|....++||++++|+++|+..++...++..+...+...|+.+++..+.++.. ..+ .+.
T Consensus 81 y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~~~~-~~~--~~~ 157 (199)
T 2zki_A 81 RYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPEL-FQT--TTG 157 (199)
T ss_dssp BTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCSTHH-HHC--SSS
T ss_pred cccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCCccc-ccc--ccC
Confidence 99999999999999987655555789999999999998755555567788889999999999877542100 000 023
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
+++||.+...+. ..|+++++++++++|++|++.+++++.
T Consensus 158 ~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~ 196 (199)
T 2zki_A 158 GGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKC 196 (199)
T ss_dssp CCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555433211 178999999999999999999988764
No 5
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.96 E-value=3.4e-30 Score=196.61 Aligned_cols=180 Identities=26% Similarity=0.318 Sum_probs=128.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|||+|++|||+++|+.|++++++. .+++.+.+ +.+....+++.+||+||||+|+|
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l~~~------~~~v~~~~--------------~~~~~~~~~l~~~D~ii~gsP~y 65 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGAEAT------LHAIDAEG--------------NLSEDGWAALDAADAIIFGTPTY 65 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTCE------EEECCTTS--------------CCCHHHHHHHHHCSEEEEEEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHhhhc------ceEeeecC--------------CCCHhHHHHHHHCCEEEEEeCcc
Confidence 35999999999999999999999999752 33444310 01111246899999999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCC--Ccccccc
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGM--SEMEKVK 159 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~--~~~~~~~ 159 (203)
++++|+++|+|+|++...|....++||++++|+++|+..++...++..+...|.++||.+++..+.++... ......+
T Consensus 66 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~~~ 145 (193)
T 3d7n_A 66 MGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANR 145 (193)
T ss_dssp TTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECCCC----------------
T ss_pred CCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeCCccCcccccccccccCCC
Confidence 99999999999999976555567999999999999886555566788899999999999999876543210 0000012
Q ss_pred CCCCCccceecC-CCC-CCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 160 GGSPYGAGTFAG-DGS-RQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 160 ~~~~~g~~~~~~-~~~-~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
.++++|...+.+ ++. ..|++++++.|+++|++|++.++++.+
T Consensus 146 ~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~ 189 (193)
T 3d7n_A 146 MGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKS 189 (193)
T ss_dssp ---CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567666553 321 238999999999999999999988754
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.96 E-value=3.8e-28 Score=184.46 Aligned_cols=163 Identities=31% Similarity=0.482 Sum_probs=127.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAAS-VEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~-~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||+|||+|++|||+++|+.|++++++ . |++++++++.+.+ .+++.+||+|||++|+
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~-g~~v~~~~l~~~~--------------------~~~l~~aD~ii~gsP~ 62 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLE-GTEVRLKHVDEAT--------------------KEDVLWADGLAVGSPT 62 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTST-TEEEEEEETTTCC--------------------HHHHHHCSEEEEEEEC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcC-CCeEEEEEhhhCC--------------------HHHHHhCCEEEEEeCc
Confidence 4699999999999999999999999986 5 8899999998742 4589999999999999
Q ss_pred CCCCcHHHHHHHHHHhcc-cccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 81 RFGMMAAQFKAFLDATGG-LWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~-~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
|++++|+.+|+|+|++.. .| ..++||++++|+++|+..++...++..+...|..+|+.+++.+...+ .+
T Consensus 63 y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~~~~~~--------~~ 132 (188)
T 2ark_A 63 NMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVG--------KK 132 (188)
T ss_dssp BTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEEEEEE--------TT
T ss_pred cCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCCCcccc--------cc
Confidence 999999999999999863 11 36899999999997654455555577788888889999986432100 00
Q ss_pred CCCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhh
Q 028847 160 GGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKKLK 200 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~-~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
....+|.... ..|+ ++++++|+++|++|++.+++++
T Consensus 133 ~~~~~g~~~~-----~~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 133 FTLHYGAVVA-----GEPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp EEESSSEEEE-----SSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcceee-----cCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112222111 4688 9999999999999999988875
No 7
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=5.5e-28 Score=179.35 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=120.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|++|+|+|++|||+++|+.|++++++ .|++++++++.+.++.++ ..++.+||+||||+|+|++
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~ii~Gspty~g 64 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVK-TGVAVEMVDLRAVDPQEL----------------IEAVSSARGIVLGTPPSQP 64 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHH-TTCCEEEEETTTCCHHHH----------------HHHHHHCSEEEEECCBSSC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHH----------------HHHHHhCCEEEEEcCCcCC
Confidence 89999999999999999999999988 489999999987655433 2467899999999999998
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSP 163 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (203)
.+|. +.|++++.. ..++||++++|+++||.+.. +..+.+.|...|+.+++.++.+ +
T Consensus 65 ~~p~--~~fl~~l~~----~~l~gk~v~~fgs~g~~g~a----~~~l~~~l~~~G~~~v~~~~~~----------~---- 120 (161)
T 3hly_A 65 SEAV--ATALSTIFA----AAHNKQAIGLFDSYGGDDEP----IDALLAQFRNLGLHTAFPPIRV----------K---- 120 (161)
T ss_dssp CHHH--HHHHHHHHH----HCCTTSEEEEECCCCSSBCC----HHHHHHHHHHTTCEESSSCBCC----------C----
T ss_pred chhH--HHHHHHHHh----hhhCCCEEEEEEcCCCCcHH----HHHHHHHHHHCCCEEecCceEE----------e----
Confidence 7764 999999852 25899999999999985322 5667889999999998765432 2
Q ss_pred CccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 164 YGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 164 ~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
+.|+++++++|++||++|++.+++
T Consensus 121 -----------~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 121 -----------DQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp -----------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------eCCCHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999988765
No 8
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.96 E-value=1.7e-27 Score=176.27 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=120.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC-CchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET-LSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||+|||+|++|||+++|+.|++++++ .|++++++++.+. ++.++ ..++.+||+||||+|+|
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~~~~~~----------------~~~~~~~d~ii~Gspty 67 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITK-TGVGVDVVDLGAAVDLQEL----------------RELVGRCTGLVIGMSPA 67 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHH-TTCEEEEEESSSCCCHHHH----------------HHHHHTEEEEEEECCBT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHH-CCCeEEEEECcCcCCHHHH----------------HHHHHhCCEEEEEcCcC
Confidence 489999999999999999999999988 4899999999886 55443 24788899999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGG 161 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
++.+| ++.|++.+.. ..++||++++|+++||.+++ +..+.+.|...|+.+++.++. ++
T Consensus 68 ~g~~p--~~~~l~~l~~----~~~~~k~va~fgs~g~~~~a----~~~l~~~l~~~G~~~v~~~~~----------~~-- 125 (159)
T 3fni_A 68 ASAAS--IQGALSTILG----SVNEKQAVGIFETGGGDDEP----IDPLLSKFRNLGLTTAFPAIR----------IK-- 125 (159)
T ss_dssp TSHHH--HHHHHHHHHH----HCCTTSEEEEECCSSSCBCC----HHHHHHHHHHTTCEESSSCBC----------CS--
T ss_pred CCCcc--HHHHHHHHHh----hcccCCEEEEEEcCCCCcHH----HHHHHHHHHHCCCEEecCceE----------EE--
Confidence 99876 4999998853 25799999999999986433 456778999999999876643 22
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 162 SPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
+.|+++|+++|++||++|++.+++
T Consensus 126 -------------~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 126 -------------QTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp -------------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------eCCCHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999987754
No 9
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.94 E-value=1.7e-27 Score=182.14 Aligned_cols=175 Identities=18% Similarity=0.087 Sum_probs=129.7
Q ss_pred CCceEEEEEecC--cchHHHHHHHHHHH-hhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 1 MATKVYIVYYSM--YGHVEKLAEEIQKG-AASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 1 mm~kilIiy~S~--~G~T~~la~~i~~~-l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
|||||+|||+|+ +|||+++|+.+++. +++. |++++++++.+.++.+|..++.. .++.. ...+++.+||+|||+
T Consensus 1 mMmkilii~gS~r~~g~t~~la~~i~~~~l~~~-g~~v~~~dl~~~~~~~~~~~~~~--~~~~~-~~~~~i~~aD~ii~~ 76 (197)
T 2vzf_A 1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLARS-DSQGRHIHVIDLDPKALLRGDLS--NAKLK-EAVDATCNADGLIVA 76 (197)
T ss_dssp CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHHS-SEEEEEEEGGGSCHHHHHHTCTT--SHHHH-HHHHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHHHHHHC-CCeEEEEEccccCchhhcccccC--cHHHH-HHHHHHHHCCEEEEE
Confidence 778999999997 69999999999999 8874 88999999998877666554211 11111 124679999999999
Q ss_pred cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHH-HHHHHHHHcCcEEecCCCCCCCCCCccc
Q 028847 78 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPL-TAITQLVHHGMIFVPIGYTFGAGMSEME 156 (203)
Q Consensus 78 sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~-~~~~~l~~~g~~~v~~~~~~~~~~~~~~ 156 (203)
||+||+++|+.+|+|||++.. ..++||++++|+++|+.+ +. .++. .+...|...|+.+++.++..+.
T Consensus 77 sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~~-~~-~a~~~~l~~~l~~~g~~~v~~~v~~~~------ 144 (197)
T 2vzf_A 77 TPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSPA-HV-LALDYGLRPVLHSMGVRHVVQSFFLVQ------ 144 (197)
T ss_dssp EECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSGG-GG-GHHHHTHHHHHHTTTCSEECCCEEEES------
T ss_pred eCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCcc-hh-hHHHHHHHHHHHHcCCEeccceEEEec------
Confidence 999999999999999999853 368999999999977643 22 2243 4677888899999876543210
Q ss_pred cccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028847 157 KVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 200 (203)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
..+ .+..+|. .+++++.++++++++++++.+++..
T Consensus 145 -----~~~---~~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~~ 179 (197)
T 2vzf_A 145 -----SQF---SVVDGKL-AVEDDVASQLNNAIDHFRLSLSSEP 179 (197)
T ss_dssp -----CCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCCG
T ss_pred -----hhh---cccCCCC-cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 000 0111222 6899999999999999998765533
No 10
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.94 E-value=6.9e-27 Score=178.16 Aligned_cols=180 Identities=14% Similarity=0.061 Sum_probs=126.2
Q ss_pred CCceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+||+||++|+ .|+|+++++.+++.++. |++++++|+.+.+.-.+. ..+...++. ....+++.+||+|||+|
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~~--~~~v~~~dl~~lp~~~~~--~~~~~~~~~-~~~~~~i~~AD~iV~~s 75 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIGD--RAQVSYLSYDRVPFFNQD--LETSVHPEV-AHAREEVQEADAIWIFS 75 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHTT--SSEEEECCCSSCCCCCGG--GTTSCCHHH-HHHHHHHHHCSEEEEEC
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcCC--CCEEEEEeCccCCCCCcc--cccCCcHHH-HHHHHHHHhCCEEEEEC
Confidence 778999999998 58999999999999973 789999999875321110 011111111 11367899999999999
Q ss_pred ccCCCCcHHHHHHHHHHhccccc------ccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWR------SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGM 152 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~------~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~ 152 (203)
|+||+++|+.||+|||++..... ...++||++++++++|+.++ . ..+..+...|...|+.+++..+...+..
T Consensus 76 P~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~-~-~~~~~l~~~l~~~G~~~v~~~v~~~~~~ 153 (192)
T 3fvw_A 76 PVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASP-E-EVFEDYRSLLPFIRMHLVDQLTGVPINS 153 (192)
T ss_dssp CCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEECCCT
T ss_pred cccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcch-h-HHHHHHHHHHHHcCCeeecceeecccch
Confidence 99999999999999999975321 23689999999999887432 2 2256677888899999998754322110
Q ss_pred CccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 028847 153 SEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKGS 202 (203)
Q Consensus 153 ~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~~ 202 (203)
..+. +|...++++..++++.+++++++.+.++.-|
T Consensus 154 --------------~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 188 (192)
T 3fvw_A 154 --------------EAWS-TGILKVSAEKLAELSAQADALLSAIENLEHH 188 (192)
T ss_dssp --------------THHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred --------------hhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 0111 2334468999999999999999888776543
No 11
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.94 E-value=7.4e-27 Score=184.02 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=127.5
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhh-cC------CCCC--CCCCCCChhhhh
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGK-MG------AGPK--SDVPTITPNELA 69 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~-~~------~~~~--~~~~~~~~~~l~ 69 (203)
|| ||+|||+|++ |||.++++.+++++++..|++++++++.+.++++|.++ .. |... ++.. ...+++.
T Consensus 1 Mm-kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~l~ 78 (242)
T 1sqs_A 1 MN-KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGG-VIKKELL 78 (242)
T ss_dssp CC-EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHH-HHHHHHH
T ss_pred CC-eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHH-HHHHHHH
Confidence 65 9999999985 99999999999999862278999999999877665443 11 1111 1111 1357899
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCC
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFG 149 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~ 149 (203)
+||+|||+||+||+++|+.||+|||++...+....++||++++|+|+|+.+. ..++..+...+...|+.+++....
T Consensus 79 ~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~--~~~~~~l~~~l~~~G~~~v~~~~~-- 154 (242)
T 1sqs_A 79 ESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGS--DNVSEYLRDIFSYMGGQILHQVSI-- 154 (242)
T ss_dssp HCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCS--CCHHHHHHHHHHHTTCEEEEEEEE--
T ss_pred HCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCch--hhHHHHHHHHHHHCCCeeeeEEEE--
Confidence 9999999999999999999999999996433334689999999999987542 234667778888899999865211
Q ss_pred CCCCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 150 AGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
+ ..+++++.+++++++++|++.+++
T Consensus 155 -------------------~-----~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 155 -------------------T-----NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp -------------------E-----GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred -------------------e-----ccCChHHHHHHHHHHHHHHHHHhc
Confidence 0 122346899999999999988765
No 12
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.94 E-value=1e-25 Score=164.60 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=116.0
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh-ccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA-EADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aD~iiigsP~ 80 (203)
|+|++|+|+|.+|||+++|+.|++.+++ .|++++++++.+.+ .+++. ++|.|||++|+
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~~d~ii~g~pt 59 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAA-GGHEVTLLNAADAS--------------------AENLADGYDAVLFGCSA 59 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTBC--------------------CTTTTTTCSEEEEEECE
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEehhhCC--------------------HhHhcccCCEEEEEecc
Confidence 3599999999999999999999999988 48999999998742 23566 99999999999
Q ss_pred CC---CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccc
Q 028847 81 RF---GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEK 157 (203)
Q Consensus 81 y~---~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|+ |.+|+.+++|++++.. ..++||++++|++++..++....+...+.+.|...|+.+++.++.
T Consensus 60 y~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~---------- 125 (148)
T 3f6r_A 60 WGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLK---------- 125 (148)
T ss_dssp ECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEE----------
T ss_pred cCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceE----------
Confidence 98 6999999999999853 368999999999955433222234677888999999999876543
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 158 VKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
+. ..|++ +++++++|+++|++
T Consensus 126 ~~---------------~~p~~-~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 126 ME---------------GDASN-DPEAVASFAEDVLK 146 (148)
T ss_dssp EE---------------SSGGG-CHHHHHHHHHHHHH
T ss_pred ee---------------cCcch-HHHHHHHHHHHHHh
Confidence 12 56888 99999999999876
No 13
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.93 E-value=1e-25 Score=162.69 Aligned_cols=135 Identities=27% Similarity=0.384 Sum_probs=114.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM 84 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
|+|+|+|++|||+++|+.|++.+++ .|++++++++.+.+ ..++.++|.||||+|+|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~iiig~pty~~g 59 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIE-SGKDVNTINVSDVN--------------------IDELLNEDILILGCSAMTDE 59 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHH-TTCCCEEEEGGGCC--------------------HHHHTTCSEEEEEECCBTTT
T ss_pred CEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEEhhhCC--------------------HHHHhhCCEEEEEcCccCCC
Confidence 5899999999999999999999998 48999999998743 35788999999999999998
Q ss_pred cHH--HHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 85 MAA--QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 85 ~~~--~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+++ .++.|++++.. .++||++++|+|+||.+ + .+...+.+.|...|+.+++.++. ++
T Consensus 60 ~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~-~--~a~~~l~~~l~~~G~~~v~~~~~----------~~--- 118 (138)
T 5nul_A 60 VLEESEFEPFIEEIST-----KISGKKVALFGSYGWGD-G--KWMRDFEERMNGYGCVVVETPLI----------VQ--- 118 (138)
T ss_dssp BCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSC-S--HHHHHHHHHHHHTTCEECSCCEE----------EE---
T ss_pred CCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCC-C--hHHHHHHHHHHHCCCEEECCceE----------Ee---
Confidence 654 79999999852 28999999999999853 2 23677888999999999976544 22
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 163 PYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 163 ~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
+.|++++ ++|++||++|++
T Consensus 119 ------------~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 119 ------------NEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp ------------SSCGGGH-HHHHHHHHHHHT
T ss_pred ------------cCCCHHH-HHHHHHHHHHhc
Confidence 6799999 999999999874
No 14
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.93 E-value=5.2e-25 Score=173.60 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=129.7
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||+||++|++ |+|+++++.+++++++ .|++++++|+.+.++..+. . ...++. ....+++.+||+|||+||
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~idL~~~pl~~~d---~-~~~d~~-~~l~~~i~~AD~iI~~sP 107 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVFDPSGLPLPDAA---P-VSHPKV-QELRELSIWSEGQVWVSP 107 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEECCCTTCCCTTSS---C-TTSHHH-HHHHHHHHHCSEEEEEEE
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEEEhhcCCCCcCC---C-CCCHHH-HHHHHHHHHCCEEEEEeC
Confidence 469999999984 8999999999999987 4899999999886542110 0 000000 013678999999999999
Q ss_pred cCCCCcHHHHHHHHHHhccccc-ccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+||+++|++||+|||++...+. ...++||++++++++|+.+ +. .++..+...|...|+.+++..+.++.
T Consensus 108 ~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~g-g~-~a~~~Lr~~l~~lg~~~v~~~v~i~~-------- 177 (247)
T 2q62_A 108 ERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQ-SF-NAVNQMRILGRWMRMITIPNQSSVAK-------- 177 (247)
T ss_dssp CSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEECSCCEEESS--------
T ss_pred CCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCcc-HH-HHHHHHHHHHHHCCCEEeCCEEEEec--------
Confidence 9999999999999999976432 2468999999999988754 33 34677888888899999876543211
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
.+. .+..+|. ..+++..+++++++++++..+++++.
T Consensus 178 ----~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 213 (247)
T 2q62_A 178 ----AFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRD 213 (247)
T ss_dssp ----GGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----chh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0111222 24667889999999999998887653
No 15
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.93 E-value=3.5e-25 Score=168.05 Aligned_cols=173 Identities=20% Similarity=0.189 Sum_probs=126.7
Q ss_pred CCceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCch-hHhhhcCCCCCCCCCCC---ChhhhhccCeE
Q 028847 1 MATKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSE-DVLGKMGAGPKSDVPTI---TPNELAEADGI 74 (203)
Q Consensus 1 mm~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~---~~~~l~~aD~i 74 (203)
|||||+||+||. .++|+++|+.+++.+++ +++++++|+.+++.- .... .+.|+. ..+++.+||++
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~--~~~~~~idl~dLP~~~~d~~-------~~~p~~~~~l~~~i~~aD~~ 71 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEG--RLEFHLLHIGDLPHYNDDLW-------ADAPESVLRLKDRIEHSDAV 71 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTT--TEEEEECCGGGSCCCCGGGG-------GGCCHHHHHHHHHHHTSSEE
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccC--CCEEEEEecccCCCCCCCcc-------cCCCHHHHHHHHHHHhCCcE
Confidence 889999999996 46799999999988764 789999999875420 0000 111211 25789999999
Q ss_pred EEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC-CCCCCCC
Q 028847 75 LLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY-TFGAGMS 153 (203)
Q Consensus 75 iigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~-~~~~~~~ 153 (203)
||+||+||+++|+.|||+||++++.+....|.||++++++++++..|+... ...+...|...|+.+++.+. ..+..
T Consensus 72 ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a-~~~Lr~vl~~lg~~v~~~p~~~i~~~-- 148 (190)
T 3u7r_A 72 LAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALA-QARLKNDLLHVGTVMMSMPEAYIQWH-- 148 (190)
T ss_dssp EEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHH-HHHHHHHHHTTTCEECCCSCCEEECC--
T ss_pred EEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHH-HHHHHHHHHHcCCEEccCCEEEEecc--
Confidence 999999999999999999999986655568999999999988776666543 56677788889999987542 11000
Q ss_pred ccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 154 EMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 154 ~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
...+..+|. ..+++..+.++.+.+++++.+++
T Consensus 149 ------------~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~ 180 (190)
T 3u7r_A 149 ------------AEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEK 180 (190)
T ss_dssp ------------GGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 011222332 34777888999999999998876
No 16
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.93 E-value=1.6e-24 Score=172.89 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=130.4
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||+||++|++ |+|+++++.+++.+++ .|++++++|+.+.++..+.. ....++. ....+++.+||+|||+||
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveiidL~dlpl~~~d~---~~~~d~v-~~l~e~I~~ADgiV~aSP 132 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIFDPSDLPLPDQVQ---SDDHPAV-KELRALSEWSEGQVWCSP 132 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTSG---GGCCHHH-HHHHHHHHHCSEEEEEEE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEEehhcCCCCccCc---cCCCHHH-HHHHHHHHHCCeEEEEcC
Confidence 469999999984 8999999999999987 48999999999875432111 0000000 013678999999999999
Q ss_pred cCCCCcHHHHHHHHHHhccccc-ccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+||+++|++||+|||++...+. ...++||++++++++|+.+ +. .++..+...+...|+.+++..+..+.
T Consensus 133 ~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~g-g~-~a~~~Lr~~l~~lg~~vv~~~v~v~~-------- 202 (279)
T 2fzv_A 133 ERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQ-SF-NAVNTLRLLGRWMRMFTIPNQSSIAK-------- 202 (279)
T ss_dssp EETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEECSCCEEETT--------
T ss_pred ccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCcc-HH-HHHHHHHHHHHhcCcEEeCCEEEEec--------
Confidence 9999999999999999975432 2468999999999998754 33 34677778888899999876543211
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
.+. .+..+|. ..+++..+++++++++++..++.++.
T Consensus 203 ----~~~--~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 238 (279)
T 2fzv_A 203 ----AFQ--EFDAAGR-MKPSPYYDRIADVMEELVRFTALVRP 238 (279)
T ss_dssp ----GGG--TBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ----ccc--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0111222 34667789999999999998887654
No 17
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.92 E-value=2e-25 Score=170.03 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=121.0
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|||+|||+|++ |||+++++.+++.++ . |++++++++.+.+. ..|..++ ...++.. ...+++.+||+|||+||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~-~-g~~v~~~dl~~~p~~~~~~~~~--~~~~~~~-~~~~~l~~aD~ii~~sP 81 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP-P-GMSIELADISGIPLYNEDVYAL--GFPPAVE-RFREQIRAADALLFATP 81 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC-T-TCEEEECCCTTCCCCCHHHHTT--CCCHHHH-HHHHHHHHCSEEEEECC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc-C-CCeEEEEeHHHCCCCCcccccc--CCCHHHH-HHHHHHHhCCEEEEEcc
Confidence 49999999985 999999999999998 3 88999999987432 1111111 0000100 12578999999999999
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC-CCCCCCCCCccccc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI-GYTFGAGMSEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~-~~~~~~~~~~~~~~ 158 (203)
+||+++|+.||+|||++...+. ..++||++++|+|+|+..++. .+...+...+...|+.+++. .+.....
T Consensus 82 ~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~~-~~~~~l~~~l~~~g~~~~~~~~~~~~~~------- 152 (193)
T 1rtt_A 82 EYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGTA-RAQYHLRQTLVFLDVHPLNKPEVMISSA------- 152 (193)
T ss_dssp EETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHHTCEECCSSCEEECSG-------
T ss_pred ccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCccH-HHHHHHHHHHHHcCCEEcCCCeEEecch-------
Confidence 9999999999999999964322 358999999999996544443 34667778888899999875 3332110
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
.. .+..++ ...+++..+++++++++++..+.+...
T Consensus 153 --~~-----~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~ 187 (193)
T 1rtt_A 153 --QN-----AFDAQG-RLLDDKARELIQQQLQALQLWVREGGS 187 (193)
T ss_dssp --GG-----TBCSTT-CBCCHHHHHHHHHHHHHHHC-------
T ss_pred --Hh-----hcCcCC-CcCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 00 011122 234677899999999999988776544
No 18
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.92 E-value=4.9e-25 Score=167.48 Aligned_cols=171 Identities=14% Similarity=0.164 Sum_probs=123.3
Q ss_pred CceEEEEEecC--cchHHHHHHHHHH----Hhhcc-CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeE
Q 028847 2 ATKVYIVYYSM--YGHVEKLAEEIQK----GAASV-EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGI 74 (203)
Q Consensus 2 m~kilIiy~S~--~G~T~~la~~i~~----~l~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 74 (203)
|.||++|++|+ .|+|.++++.+++ .+++. .|++++++|+.+.+++.|..+..+.+.++.. ...+++.+||+|
T Consensus 11 ~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~-~~~~~i~~AD~i 89 (191)
T 3k1y_A 11 MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLE-EITSALSASDGL 89 (191)
T ss_dssp SEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHH-HHHHHHHHCSEE
T ss_pred hceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHH-HHHHHHHHCCEE
Confidence 68999999997 5899999999999 55543 2789999999998765544332221111111 136799999999
Q ss_pred EEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHH-HHHHHHHcCcEEecCCCCCCCCCC
Q 028847 75 LLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLT-AITQLVHHGMIFVPIGYTFGAGMS 153 (203)
Q Consensus 75 iigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~-~~~~l~~~g~~~v~~~~~~~~~~~ 153 (203)
||+||+||+++|++||+|||++.+ ..++||++++++++|+.++. . .+.. +...|...|+.+++..+...
T Consensus 90 vi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~~~-~-~~~~~L~~il~~lg~~vv~~~v~~~---- 159 (191)
T 3k1y_A 90 VVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSARHS-L-VLDYALRPLLSYMRAVVVPTGVFAA---- 159 (191)
T ss_dssp EEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSSTTT-T-HHHHTHHHHHHHTTCEECSCCEEEE----
T ss_pred EEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcchh-h-HHHHHHHHHHHHCCCEEcCcEEEec----
Confidence 999999999999999999999963 47999999999998875443 2 2334 66778889999997754321
Q ss_pred ccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 154 EMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 154 ~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
...++. ..+++..+.+++++++++..+.+-
T Consensus 160 -------~~~f~~---------~~~~~~~~rl~~~~~~~~~~~~~~ 189 (191)
T 3k1y_A 160 -------TEDFGG---------PEGAEFNKRIARAAGELASLIVEE 189 (191)
T ss_dssp -------GGGCSH---------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------hhhcCC---------CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 001100 013556777888888888777653
No 19
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.92 E-value=1.9e-24 Score=157.59 Aligned_cols=140 Identities=22% Similarity=0.190 Sum_probs=113.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhc-cCeEEEecccCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE-ADGILLGFPTRF 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aD~iiigsP~y~ 82 (203)
|++|+|+|++|||+++|+.|++.+++. |++++++++.+.+ ..++.+ +|.|||++|+|+
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~-g~~v~~~~~~~~~--------------------~~~l~~~~d~ii~~~p~y~ 60 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADA-GYEVDSRDAASVE--------------------AGGLFEGFDLVLLGCSTWG 60 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHH-TCEEEEEEGGGCC--------------------STTTTTTCSEEEEEECEEC
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHhc-CCeeEEEehhhCC--------------------HHHhcCcCCEEEEEeCCCC
Confidence 899999999999999999999999874 8899999987642 235778 999999999995
Q ss_pred -CC--cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 83 -GM--MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 83 -~~--~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+. +|+.+++|++++.. ..++||++++|+++++..+....+...+...|...|+.+++.++. +.
T Consensus 61 ~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~----------~~ 126 (147)
T 1f4p_A 61 DDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLR----------ID 126 (147)
T ss_dssp SSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE----------EE
T ss_pred CCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccc----------cc
Confidence 66 79999999999853 268999999999976543333345777888888999998875432 11
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
..|++ +++++++|++++++
T Consensus 127 ---------------~~p~~-~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 127 ---------------GDPRA-ARDDIVGWAHDVRG 145 (147)
T ss_dssp ---------------SCGGG-GHHHHHHHHHHHHT
T ss_pred ---------------cCchh-HHHHHHHHHHHHHh
Confidence 35666 89999999999875
No 20
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.92 E-value=4.4e-24 Score=179.96 Aligned_cols=149 Identities=25% Similarity=0.244 Sum_probs=123.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++.+++ .|++++++++.+.++... .+++.+||+||||||+|
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~-~g~~v~~~~l~~~~~~~~----------------~~~l~~~D~iiigsP~y 318 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARS-TGCETVLLEMTSSDITKV----------------ALHTYDSGAVAFASPTL 318 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGCCHHHH----------------HHHHHTCSEEEEECCCB
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEEcCcCCHHHH----------------HHHHHhCCEEEEEcCcc
Confidence 4699999999999999999999999987 488999999987654322 34799999999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCC-CCCeEEEEEccCCCCCCchhHHHHHHHHHHH-cCcEEecCC-CCCCCCCCccccc
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVH-HGMIFVPIG-YTFGAGMSEMEKV 158 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~-~g~~~v~~~-~~~~~~~~~~~~~ 158 (203)
++++|+++|+|+|++... .+ +||++++|+++|+.++ +...+...|.. .|+.+++.+ +. +
T Consensus 319 ~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~~~----a~~~l~~~l~~~~g~~~~~~~~~~----------~ 380 (414)
T 2q9u_A 319 NNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWSNR----AVPDIVAELRDGCKADVYDEKGIT----------F 380 (414)
T ss_dssp TTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSSCC----HHHHHHHHHHHTSCCBCCCSSCEE----------E
T ss_pred CcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCCch----hHHHHHHHHHhhcCcEEccCccEE----------E
Confidence 999999999999998632 46 8999999999988533 24567778888 899988654 32 1
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 200 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
. ..|+++++++++++++++++.+++++
T Consensus 381 ~---------------~~p~~~~~~~~~~~g~~l~~~~~~~~ 407 (414)
T 2q9u_A 381 K---------------FNYTEELLEQAYNAGVDLGKRAIAYC 407 (414)
T ss_dssp E---------------SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred e---------------eCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 46899999999999999998877654
No 21
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.91 E-value=5.8e-24 Score=152.93 Aligned_cols=133 Identities=25% Similarity=0.310 Sum_probs=110.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM 84 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
++|+|+|++|||+++|+.|++.+++ .|++++++++.+.+ .+++.++|.|||++|+|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~vi~g~p~y~~~ 60 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKA-AGADVESVRFEDTN--------------------VDDVASKDVILLGCPAMGSE 60 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHH-TTCCEEEEETTSCC--------------------HHHHHTCSEEEEECCCBTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHHHh-CCCeEEEEEcccCC--------------------HHHHhcCCEEEEEccccCCC
Confidence 8999999999999999999999988 48899999988742 35788999999999999999
Q ss_pred cHHH--HHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 85 MAAQ--FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 85 ~~~~--lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+|++ +++|+|++. ..++||++++|+|+|+.. + .+...+...|...|+.+++ .+. ++
T Consensus 61 ~~~~~~~~~fl~~l~-----~~l~~k~~~~~~t~g~~~-~--~~~~~l~~~l~~~g~~~~~-~~~----------~~--- 118 (137)
T 2fz5_A 61 ELEDSVVEPFFTDLA-----PKLKGKKVGLFGSYGWGS-G--EWMDAWKQRTEDTGATVIG-TAI----------VN--- 118 (137)
T ss_dssp BCCHHHHHHHHHHHG-----GGCSSCEEEEEEEESSCC-S--HHHHHHHHHHHHTTCEEEE-EEE----------EE---
T ss_pred CCCHHHHHHHHHHhh-----hhcCCCEEEEEEecCCCC-c--hHHHHHHHHHHHCCCEEcC-cEE----------Ee---
Confidence 9998 999999985 268999999999998752 2 2367788888889999984 332 11
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 163 PYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 163 ~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
+.|++ +++++++|+++++
T Consensus 119 ------------g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 119 ------------EMPDN--APECKELGEAAAK 136 (137)
T ss_dssp ------------SSSSS--CTHHHHHHHHHHT
T ss_pred ------------eCCCh--HHHHHHHHHHHhc
Confidence 34655 9999999999864
No 22
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.91 E-value=2.6e-25 Score=166.81 Aligned_cols=167 Identities=16% Similarity=0.082 Sum_probs=118.2
Q ss_pred eEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
||+|||+|++ |||+++++.+++.++. +++++.+.+++.+..+..+...++.. ...+++.+||+|||+||+|
T Consensus 2 kilii~gS~~~~g~t~~la~~i~~~l~~------~~i~l~~~~lp~~~~~~~~~~~~~~~-~~~~~i~~aD~ii~~tP~y 74 (174)
T 3gfs_A 2 NMLVINGTPRKHGRTRIAASYIAALYHT------DLIDLSEFVLPVFNGEAEQSELLKVQ-ELKQRVTKADAIVLLSPEY 74 (174)
T ss_dssp -CEEEECCCCTTCHHHHHHHHHHHHTTC------EEEETTTSCCCCCCCCHHHHTCHHHH-HHHHHHHHCSSEEEEEECS
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHhCcc------eEEeeecCCCCCCCChhhccCcHHHH-HHHHHHHHCCEEEEEcCCc
Confidence 8999999987 9999999999999853 46777765443221110000000000 1256899999999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGG 161 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
|+++|+.||+|||++.. ..++||++++++++++..++.. +...+...|...|+.+++.++..+.
T Consensus 75 ~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g~~~-a~~~l~~~l~~~g~~~v~~~v~i~~----------- 138 (174)
T 3gfs_A 75 HSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDGGIN-ALNNMRTVMRGVYANVIPKQLVLKP----------- 138 (174)
T ss_dssp SSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTCSHH-HHHHHHHHHHHTTCEEEEEEEEECG-----------
T ss_pred CCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChhHHH-HHHHHHHHHHHcCCEEecceEEech-----------
Confidence 99999999999999863 3689999999997665444433 3667888888999999986543210
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 162 SPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
..+.. ....++++..+.++++++++++.++.-
T Consensus 139 -----~~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~ 170 (174)
T 3gfs_A 139 -----VHIDV-ENATVAENIKESIKELVEELSMFAKAG 170 (174)
T ss_dssp -----GGEET-TTTEECHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----hhcCC-CCCccCHHHHHHHHHHHHHHHHHHHcC
Confidence 01111 124678889999999999999887653
No 23
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.91 E-value=2.7e-23 Score=159.00 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=126.3
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHhhccCCceEE-EEEcCCCCch-hHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 3 TKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAK-LWQVPETLSE-DVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|||++|++|+ .|+|+++++.+++.+.+ |++++ ++|+.+.+.- .....+. ..++. ....+++.+||+|||+|
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~~~--g~~v~~~idL~~lP~~~~~~~~~~--~~~~~-~~~~~~i~~AD~iVi~t 81 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPE--GIAITPLGSIGTFPHYSQDVQEEG--FPAPV-LTMAQQIATADAVVIVT 81 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHCCT--TEEEEECCCGGGSCCCCHHHHHHC--CCHHH-HHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHccC--CCEEEEEEehhhcCCCCccccccC--CCHHH-HHHHHHHHhCCEEEEEc
Confidence 4999999996 58999999999999964 88999 9999875321 1111110 00000 11367899999999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC-CCCCCCCCcccc
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG-YTFGAGMSEMEK 157 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~-~~~~~~~~~~~~ 157 (203)
|+||+++|+.||+|||++.+. ....|+||++++++++++..++.. +...+...|...|+.+++.+ +..+..
T Consensus 82 P~Y~~s~p~~LK~~iD~~~~~-~~~~l~gK~v~~v~tsgg~~g~~~-a~~~Lr~il~~lg~~~v~~~~v~i~~~------ 153 (199)
T 4hs4_A 82 PEYNYSVPGVLKNAIDWLSRV-SPQPLAGKPVALVTASPGMIGGAR-AQNHLRQSLVFLDAYVLNRPEAMIGQV------ 153 (199)
T ss_dssp CCBTTBCCHHHHHHHHHHTTS-SSCTTTTCEEEEEEECSSSSCSHH-HHHHHHHHHHHTTCEECCSSCEEECSG------
T ss_pred CccCCCcCHHHHHHHHHhccc-CCcccCCCEEEEEEeCCCCcccHH-HHHHHHHHHHHcCCEEcCCCeEEeech------
Confidence 999999999999999999752 234799999999999876555543 36677788888999999753 332110
Q ss_pred ccCCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 158 VKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~-~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
.. .+..+ |. ..+++..++++.+.++++..++++..
T Consensus 154 ---~~-----~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~~ 189 (199)
T 4hs4_A 154 ---TG-----KVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
T ss_dssp ---GG-----TBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---hh-----hcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 11111 22 34788899999999999998887654
No 24
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.91 E-value=1e-25 Score=170.00 Aligned_cols=164 Identities=18% Similarity=0.124 Sum_probs=106.5
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC-----CCCCCCCChhhhhccCe
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP-----KSDVPTITPNELAEADG 73 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~aD~ 73 (203)
|| ||+|||+|++ |||+++++.+++++ +++.+++.+..+++|..+..+.. .++.. ...+++.+||+
T Consensus 3 mM-kilii~~S~r~~g~t~~la~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~aD~ 74 (184)
T 1rli_A 3 AM-KIAVINGGTRSGGNTDVLAEKAVQGF------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYD-SIIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT------CCEEEEC-----------------------CHH-HHHHHHHTCSE
T ss_pred Cc-EEEEEECCCCCCccHHHHHHHHHcCC------eEEEEEcCCCCCccCCccccccCCCCCCCCCHH-HHHHHHHhCCE
Confidence 55 9999999975 99999999998765 56788898887777665432211 11111 12568999999
Q ss_pred EEEecccCCCCcHHHHHHHHHHhccccc-------ccCCCCCeEEEEEccCCCC--CCchhHHHHHHHHHHHcCcEEecC
Q 028847 74 ILLGFPTRFGMMAAQFKAFLDATGGLWR-------SQQLAGKPAGIFYSTGSQG--GGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk~fld~~~~~~~-------~~~l~gK~~~~~~t~g~~~--~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
|||++|+||+++|++||+|||++...+. .+.++||++++|+|+|+.. ++. ..+..+...+...|+.+++.
T Consensus 75 ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~-~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGL-PLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTH-HHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchH-HHHHHHHHHHHHcCCccceE
Confidence 9999999999999999999999853221 1247899999999988742 222 23566777788889999864
Q ss_pred CCCCCCCCCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028847 145 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 193 (203)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 193 (203)
....+ .. .+...++++++++++++|++++
T Consensus 154 ~~~~g------------~~--------~~~~~~~~~~l~~a~~lg~~~~ 182 (184)
T 1rli_A 154 VLGEG------------NR--------PGDILRDHQALSAASRLLKRSD 182 (184)
T ss_dssp EEEEC------------SS--------TTGGGGCHHHHHHHHHTTCCCC
T ss_pred EEEcc------------CC--------cchhhcCHHHHHHHHHhhhhcc
Confidence 22110 00 1113357899999999998764
No 25
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.90 E-value=4.8e-23 Score=158.48 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=101.8
Q ss_pred CCceEEEEEecCc----chHHHHHHHHHHHhhcc-CCceEEEEEcC--CCCchhHhhhc----C---------CCCC---
Q 028847 1 MATKVYIVYYSMY----GHVEKLAEEIQKGAASV-EGVEAKLWQVP--ETLSEDVLGKM----G---------AGPK--- 57 (203)
Q Consensus 1 mm~kilIiy~S~~----G~T~~la~~i~~~l~~~-~g~~v~~~~l~--~~~~~~~~~~~----~---------~~~~--- 57 (203)
|| |||||++|++ |+|.+|++.+++++++. ++.+|+++|+. +.+++.|..+. . |...
T Consensus 1 M~-kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (208)
T 2hpv_A 1 MS-KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQ 79 (208)
T ss_dssp -C-EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHH
T ss_pred CC-eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHH
Confidence 54 9999999986 89999999999999875 13899999999 76544332110 0 1100
Q ss_pred ---CCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhccc---c------cccCCCCCeEEEEEccCCCCCCchh
Q 028847 58 ---SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL---W------RSQQLAGKPAGIFYSTGSQGGGQET 125 (203)
Q Consensus 58 ---~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~---~------~~~~l~gK~~~~~~t~g~~~~~~~~ 125 (203)
++.. ...+++.+||+|||++|+||+++|+.||+|||++... + ..+.++||++++++|+|+..++...
T Consensus 80 ~~~~~~~-~~~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~ 158 (208)
T 2hpv_A 80 QKVARFN-ELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDF 158 (208)
T ss_dssp HHHHHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSH
T ss_pred hhHHHHH-HHHHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcch
Confidence 0000 1356899999999999999999999999999998642 1 1235899999999998775443222
Q ss_pred HHHHHHHHHHHcCcEEecC
Q 028847 126 TPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 126 ~~~~~~~~l~~~g~~~v~~ 144 (203)
....+...+...|+.+++.
T Consensus 159 ~~~~l~~~~~~~G~~~~~~ 177 (208)
T 2hpv_A 159 ASQYIKAILNFIGVDQVDG 177 (208)
T ss_dssp HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCeeeE
Confidence 2445566777789888753
No 26
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.90 E-value=7.2e-23 Score=156.30 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=103.6
Q ss_pred CCceEEEEEecCc---chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhhhcC--CC--CCCCCC---------CC
Q 028847 1 MATKVYIVYYSMY---GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKMG--AG--PKSDVP---------TI 63 (203)
Q Consensus 1 mm~kilIiy~S~~---G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~~~~--~~--~~~~~~---------~~ 63 (203)
|| ||+|||+|++ |||+++++.+++.+++. ++++++++|+.+.+++.|..+.. +. ..+..+ ..
T Consensus 1 Mm-kilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 79 (201)
T 1t5b_A 1 MS-KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDE 79 (201)
T ss_dssp CC-EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHH
T ss_pred CC-eEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 54 9999999986 89999999999999874 13899999999876543322211 11 111111 01
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCCCCCc--hhHHHHHHH
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAIT 132 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~~~~ 132 (203)
..+++.+||+|||+||+||+++|++||+|||++.... ..+.++||++++|+|+|+..++. ......+..
T Consensus 80 ~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 80 LIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 2468999999999999999999999999999996421 01358999999999988753331 223555667
Q ss_pred HHHHcCcEEecC
Q 028847 133 QLVHHGMIFVPI 144 (203)
Q Consensus 133 ~l~~~g~~~v~~ 144 (203)
.+...|+.+++.
T Consensus 160 ~l~~~G~~~~~~ 171 (201)
T 1t5b_A 160 FLGFIGITDVNF 171 (201)
T ss_dssp HHHHTTCCCEEE
T ss_pred HHhhcCcceeEE
Confidence 778889988754
No 27
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.89 E-value=3.7e-22 Score=148.72 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=116.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC-
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF- 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~- 82 (203)
|++|+|+|++|||+++|+.|++.+.. . ++++++++.+.+ .+++.++|.||||+|+|+
T Consensus 2 kilIvY~S~tGnT~~vA~~ia~~l~~-~-~~v~~~~~~~~~--------------------~~~l~~~d~ii~g~pty~~ 59 (169)
T 1czn_A 2 KIGLFYGTQTGVTQTIAESIQQEFGG-E-SIVDLNDIANAD--------------------ASDLNAYDYLIIGCPTWNV 59 (169)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHTS-T-TTEEEEEGGGCC--------------------GGGGGGCSEEEEECCEETT
T ss_pred eEEEEEECCCcHHHHHHHHHHHHhCc-c-cceEEEEhhhCC--------------------HhHHhhCCEEEEEecccCC
Confidence 89999999999999999999999975 3 578899987642 347889999999999998
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC-CC-CchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+.+|+.+++|++++.. ..++||++++|+++++. .+ ....+...+.+.|...|+.+++.....+..+.....+..
T Consensus 60 g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~ 135 (169)
T 1czn_A 60 GELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRN 135 (169)
T ss_dssp TEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEET
T ss_pred CcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeC
Confidence 6799999999998852 37899999999998763 32 223446778888888999998743222221111000110
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
+.+.|. .. ...++++++.+++++|++++.+.
T Consensus 136 ~~~~gl-~~---~~~~~~~~~~~~~~~w~~~~~~~ 166 (169)
T 1czn_A 136 NQFVGL-AI---DEDNQPDLTKNRIKTWVSQLKSE 166 (169)
T ss_dssp TEESSE-EE---CTTTCGGGHHHHHHHHHHHHHHH
T ss_pred Ceeeee-ee---cCCCccccCHHHHHHHHHHHHHH
Confidence 111110 11 11356788999999999998764
No 28
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.89 E-value=7.4e-23 Score=171.74 Aligned_cols=147 Identities=27% Similarity=0.356 Sum_probs=121.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|.+|||+++|+.|++.+.+ .|++++++++.+.....+ .+++.+||+||||||+|+
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~l~~~d~iiigsP~y~ 319 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMS-EGVDVRVYCLHEDDRSEI----------------VKDILESGAIALGAPTIY 319 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTSCHHHH----------------HHHHHTCSEEEEECCEET
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHH----------------HHHHHHCCEEEEECcccc
Confidence 489999999999999999999999987 488999999987654332 347999999999999999
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+++|+.+|+|+|++...+... ++||++++|+++|+.+++ ...+...|...|+.+++. +. +.
T Consensus 320 ~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~~~a----~~~l~~~l~~~g~~~~~~-~~----------~~--- 380 (404)
T 2ohh_A 320 DEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGNGGA----TGTMKELLAEAGFDVACE-EE----------VY--- 380 (404)
T ss_dssp TEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSSCCH----HHHHHHHHHHTTEEEEEE-EE----------EE---
T ss_pred ccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCCChh----HHHHHHHHHHCCCEEEeE-EE----------Ee---
Confidence 999999999999986543333 699999999999886332 456778888899999874 32 11
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028847 163 PYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 197 (203)
Q Consensus 163 ~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 197 (203)
..|++++++.++++++++++.++
T Consensus 381 ------------~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 381 ------------YVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp ------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ------------eCCCHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999987663
No 29
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.89 E-value=3e-23 Score=158.07 Aligned_cols=176 Identities=19% Similarity=0.135 Sum_probs=121.8
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHhhccCCceEE-EEEcCCCCch-hHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 3 TKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAK-LWQVPETLSE-DVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|||++|++|+ .++|.++++.+++.+. .|++++ ++|+.+.+.- ..... .+...++.. ...+++.+||+|||+|
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~~--~g~~v~~~idL~~lP~~~~~~~~-~~~~~~~~~-~l~~~i~~AD~iv~~s 80 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIAP--ASMEVNALPSIADIPLYDADVQQ-EEGFPATVE-ALAEQIRQADGVVIVT 80 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTSC--TTEEEEECCCSTTCCCCCHHHHH-HTCSCHHHH-HHHHHHHHSSEEEEEE
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHcc--CCCEEEEEEeHHHCCCCCccccc-ccCCCHHHH-HHHHHHHHCCEEEEEe
Confidence 5999999997 5889999999877653 488999 8999985321 11110 011001111 1367899999999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC-CCCCCCcccc
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT-FGAGMSEMEK 157 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~-~~~~~~~~~~ 157 (203)
|+||+++|+.||+|||++.+. ....++||++++++++++..++.. +...+...|...|+.+++.+.. .+.
T Consensus 81 P~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~~-a~~~Lr~~l~~lg~~v~~~~~~~~~~------- 151 (193)
T 3svl_A 81 PEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGAR-CQYHLRQILVFLDAMVMNKPEFMGGV------- 151 (193)
T ss_dssp CCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTHH-HHHHHHHHHHHTTCEECCSSCEEETT-------
T ss_pred cccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchHH-HHHHHHHHHHHCCCEEcCCCeEeecc-------
Confidence 999999999999999999742 224789999999998765444443 3667778888899999865421 100
Q ss_pred ccCCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 158 VKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~-~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
.. ..+..+ |. ..+++..+.+++++++++..++++
T Consensus 152 -----~~--~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~ 186 (193)
T 3svl_A 152 -----IQ--NKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRV 186 (193)
T ss_dssp -----GG--GGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC--
T ss_pred -----hh--hhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 00 012211 32 347888999999999999877654
No 30
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.88 E-value=3.5e-23 Score=157.23 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=100.4
Q ss_pred eEEEEEecCc--chHHHHHHHHHHHhhccC-----CceEEEEEcCCCCchhHhhhcCCCC------CCCCC---CCChhh
Q 028847 4 KVYIVYYSMY--GHVEKLAEEIQKGAASVE-----GVEAKLWQVPETLSEDVLGKMGAGP------KSDVP---TITPNE 67 (203)
Q Consensus 4 kilIiy~S~~--G~T~~la~~i~~~l~~~~-----g~~v~~~~l~~~~~~~~~~~~~~~~------~~~~~---~~~~~~ 67 (203)
||+|||+|++ |+|+++++.+++.+++.. |++++++|+.+.++++|..+..+.+ +...+ ....++
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI 81 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence 8999999986 999999999999998731 6899999998765544433222211 00000 113578
Q ss_pred hhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 68 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 68 l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
+.+||+|||+||+||+++|+.||+|||++.. .++||+++++++ |+.+ + ..++..+...+...|+.+++
T Consensus 82 l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~~-~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 82 VNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGHG-G-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETTT-T-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCcc-h-hhHHHHHHHHHHHCCCEEcc
Confidence 9999999999999999999999999999852 589999998865 5533 3 23466777888889999987
No 31
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.88 E-value=8.9e-23 Score=157.56 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=102.4
Q ss_pred CCceEEEEEecCc----chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhhhcCC--C-----CCCCCC-------
Q 028847 1 MATKVYIVYYSMY----GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKMGA--G-----PKSDVP------- 61 (203)
Q Consensus 1 mm~kilIiy~S~~----G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~~~~~--~-----~~~~~~------- 61 (203)
||||||||++|+. |+|.+|++.+.+.+++. +|.+|+++||.+.++ +++.+..+ . ..+..+
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEEL-PYVGVDMINGTFKAGKGFDLTEEEAKAVA 81 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCC-CCCCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCC-CcCCHHHHHhhhccCccccCCHHHHhhHH
Confidence 6789999999976 68999999999999863 378999999998765 33322110 0 000001
Q ss_pred --CCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCCCCCc-----hh
Q 028847 62 --TITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ-----ET 125 (203)
Q Consensus 62 --~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~~-----~~ 125 (203)
....+++.+||+|||++|+||+++|+.||+|||++.... ..+.++||++.+++|+|+..++. ..
T Consensus 82 ~~~~~~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~ 161 (211)
T 3p0r_A 82 VADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEM 161 (211)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCB
T ss_pred HHHHHHHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhH
Confidence 113678999999999999999999999999999986431 12368999999999988764321 12
Q ss_pred HHHHHHHHHHHcCcEEec
Q 028847 126 TPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 126 ~~~~~~~~l~~~g~~~v~ 143 (203)
....+...|...|+..+.
T Consensus 162 ~~~~l~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 162 AVKYVASMMGFFGATNME 179 (211)
T ss_dssp SHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHhCCCCeee
Confidence 234556677777887654
No 32
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.88 E-value=2.2e-21 Score=144.49 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=116.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
||++|+|+|++|||+++|+.|++.+.+ . +++++++.+.+ .+++.++|.||||+|+|+
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~--~-~v~~~~~~~~~--------------------~~~l~~~d~ii~g~p~y~ 58 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGN--D-VVTLHDVSQAE--------------------VTDLNDYQYLIIGCPTLN 58 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCT--T-TEEEEETTTCC--------------------GGGGGGCSEEEEEEEEET
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCc--C-CcEEEEcccCC--------------------HHHHhhCCEEEEEEeeCC
Confidence 389999999999999999999999975 2 68888887642 347889999999999996
Q ss_pred -CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC-CC-CchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 83 -GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 83 -~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+.+|+.++.|++++.. ..++||++++|+++++. .+ ....+...+.+.|...|+.+++.....|..+..+..+.
T Consensus 59 ~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~ 134 (169)
T 1obo_A 59 IGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALR 134 (169)
T ss_dssp TTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEE
T ss_pred CCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhc
Confidence 6788889999998853 37899999999998763 22 12344677888888899999876433332211110011
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
.+.+.|. .. +..++++.+.+++++|++++.+.+
T Consensus 135 ~~~~~~l-~~---~~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 135 NGKFVGL-AL---DEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp TTEESSE-EE---CTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CCceeeE-Ee---eCCCccccCHHHHHHHHHHHHHHh
Confidence 0111110 11 112356778999999999987654
No 33
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.81 E-value=1.4e-24 Score=166.21 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=123.3
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEE-EcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLW-QVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|||+||++|++ |+|+++++.+++.+.+ |++++++ |+.+.+. ++-....+...++.. ...+++.+||+|||+||
T Consensus 7 mkIliI~gS~r~~s~t~~la~~~~~~~~~--g~~v~~i~dl~~lp~-~~~~~~~~~~~~~~~-~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPE--GIAITPLGSIGTFPH-YSQDVQEEGFPAPVL-TMAQQIATADAVVIVTP 82 (199)
Confidence 49999999985 8999999999999975 7899999 9987422 111100111112222 24678999999999999
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC-CCCCCCCCCccccc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI-GYTFGAGMSEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~-~~~~~~~~~~~~~~ 158 (203)
+||+++|+.||+|||++...+.. .++||++++++++++..++.. +...+...|...|+.+++. .+..+..
T Consensus 83 ~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~~~-a~~~Lr~~l~~lg~~~v~~~~v~i~~~------- 153 (199)
T 3s2y_A 83 EYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGGAR-AQYHLRQSLVFLDAYVLNRPEAMIGQV------- 153 (199)
Confidence 99999999999999999754322 689999999998765444433 3566777888889999876 4432110
Q ss_pred cCCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028847 159 KGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLKG 201 (203)
Q Consensus 159 ~~~~~~g~~~~~~~-~~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
. ..+..+ |. ..+++..+.++.+.++++..+++..+
T Consensus 154 --~-----~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~ 189 (199)
T 3s2y_A 154 --T-----GKVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
Confidence 0 011112 22 23556778888888888887766543
No 34
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.88 E-value=1.9e-21 Score=145.88 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=116.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-C
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-F 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
|++|||+|++|||+++|+.|++.+... +++++++.+. ...++.++|.||||+|+| .
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~~~---~v~i~~~~~~--------------------~~~~l~~~d~ii~g~pt~~~ 58 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLGKD---VADVHDIAKS--------------------SKEDLEAYDILLLGIPTWYY 58 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCTT---TEEEEEGGGC--------------------CHHHHHTCSEEEEECCEETT
T ss_pred EEEEEEECCCchHHHHHHHHHHHhccC---ceEEEEcccC--------------------ChhHhhhCCEEEEEEeecCC
Confidence 899999999999999999999999752 5788888653 245788999999999997 5
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCC--chhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+.+|+.++.|++++.. ..++||++++|++++..+.+ ...++..+.+.|...|+.+++...+.|+.+..+..+..
T Consensus 59 G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~ 134 (175)
T 1ag9_A 59 GEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLAD 134 (175)
T ss_dssp TEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEE
T ss_pred CcChHHHHHHHhhhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheee
Confidence 8899999999999853 36899999999998754222 12446777888888999999854444432221110100
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
...+..... +..++++++.+++.+|+++|...+
T Consensus 135 ~~~~~gl~~---~~~~~~~~~~~~i~~w~~~i~~~~ 167 (175)
T 1ag9_A 135 DDHFVGLAI---DEDRQPELTAERVEKWVKQISEEL 167 (175)
T ss_dssp TTEESSEEE---CTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeeec---CCCCcccccHHHHHHHHHHHHHHh
Confidence 011111111 113566788999999999998655
No 35
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.88 E-value=4.2e-22 Score=153.77 Aligned_cols=143 Identities=21% Similarity=0.140 Sum_probs=101.8
Q ss_pred CCceEEEEEecCc---chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhh----hcCC-CCCCCCC---------C
Q 028847 1 MATKVYIVYYSMY---GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLG----KMGA-GPKSDVP---------T 62 (203)
Q Consensus 1 mm~kilIiy~S~~---G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~----~~~~-~~~~~~~---------~ 62 (203)
|| |||||++|++ |+|.+|++.+.+++++. +|.+|+++|+.+.+++.|.. +..+ ...+..+ .
T Consensus 1 Mm-kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T 3r6w_A 1 MS-RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSD 79 (212)
T ss_dssp CC-CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHH
T ss_pred CC-EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 54 9999999975 57999999999999863 37899999998876543321 2122 1111111 1
Q ss_pred CChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc-----c--------ccCCCCCeEEEEEccCCC--CCCc----
Q 028847 63 ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----R--------SQQLAGKPAGIFYSTGSQ--GGGQ---- 123 (203)
Q Consensus 63 ~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~-----~--------~~~l~gK~~~~~~t~g~~--~~~~---- 123 (203)
...+++.+||+|||++|+||+++|+.||+|||++.... . .+.++||++.+++|+|++ .++.
T Consensus 80 ~~~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 80 QLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 12578999999999999999999999999999995421 1 347899999999998842 2111
Q ss_pred -hhHHHHHHHHHHHcCcEEecC
Q 028847 124 -ETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 124 -~~~~~~~~~~l~~~g~~~v~~ 144 (203)
......+...|...|+..++.
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~ 181 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTV 181 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEE
T ss_pred hhhhHHHHHHHHHHCCCceeEE
Confidence 112344566777789988754
No 36
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.88 E-value=4.9e-22 Score=148.03 Aligned_cols=146 Identities=12% Similarity=0.006 Sum_probs=112.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|.+|||+++|+.|++.+.+. |++++++++.+.. ..++.++|.||||+|+|
T Consensus 9 ~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~-g~~v~~~~~~~~~--------------------~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 9 MPGITIISASQTGNARRVAEALRDDLLAA-KLNVKLVNAGDYK--------------------FKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp ---CEEEEECSSSHHHHHHHHHHHHHHHH-TCCCEEEEGGGCC--------------------GGGGGGCSEEEEEEECB
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHC-CCceEEeehhhCC--------------------HHHhccCCeEEEEEccc
Confidence 35999999999999999999999999874 8889999887642 34688899999999999
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccC
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKG 160 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
++.+|..++.|++++... ....+++|++++|++++..++....+...+.+.|...|+.++....
T Consensus 68 g~G~~p~~~~~f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~-------------- 132 (167)
T 1ykg_A 68 GEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRV-------------- 132 (167)
T ss_dssp GGGBCCGGGHHHHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCE--------------
T ss_pred CCCcCChhHHHHHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecce--------------
Confidence 789999999999998521 0125889999999986543322223466778888888998875431
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 161 GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
..++++.+++++|+++|.+.+..
T Consensus 133 ---------------~~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 133 ---------------DADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp ---------------EECTTCHHHHHHHHHHHHHHHHT
T ss_pred ---------------ecCCCcHHHHHHHHHHHHHHHHh
Confidence 12345788899999999887754
No 37
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.88 E-value=6.5e-22 Score=149.24 Aligned_cols=166 Identities=20% Similarity=0.158 Sum_probs=117.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++.+.. . ++++++++.+.. .+++.++|.||||+|+|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~-~-~~v~~~~~~~~~--------------------~~~l~~~d~ii~g~pty 58 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDD-E-VMAKPLNVNRAD--------------------VADFMAYDFLILGTPTL 58 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCT-T-TBCCCEEGGGCC--------------------HHHHHHCSEEEEEEECB
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhcc-c-CceEEEEcccCC--------------------HHHHhhCCeEEEEEeeC
Confidence 3599999999999999999999999975 2 567788876532 35788999999999999
Q ss_pred C-CCcH--------HHHHHHHHHhcccccccCCCCCeEEEEEccCCC-CC-CchhHHHHHHHHHHHcCcEEecCCCCCCC
Q 028847 82 F-GMMA--------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMIFVPIGYTFGA 150 (203)
Q Consensus 82 ~-~~~~--------~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~~~~~l~~~g~~~v~~~~~~~~ 150 (203)
+ +.+| +.++.|++++.. ..++||++++|++++.. .+ ....+...+...|...|+.+++.....|.
T Consensus 59 ~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~ 134 (182)
T 2wc1_A 59 GDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGY 134 (182)
T ss_dssp TTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTS
T ss_pred CCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCc
Confidence 8 8888 889999999853 37899999999998753 22 22334677888888899999987555554
Q ss_pred CCCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028847 151 GMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 197 (203)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 197 (203)
++.....+..+.+.|. .. ++ .+..+.+.+++.+|+++|.+.+.
T Consensus 135 ~~~~~~~~~~~~~~gl-~~--d~-~~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 135 GFEDSLAVVEGEFLGL-AL--DQ-DNQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp CCSCCTTEETTEESSE-EE--CT-TTCGGGHHHHHHHHHHHTHHHHT
T ss_pred CcccchhhhcCceeee-ec--cC-CCCccccHHHHHHHHHHHHHHHh
Confidence 3222111111111111 00 11 12234578889999999876553
No 38
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.88 E-value=6.4e-22 Score=166.49 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=114.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC---chhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL---SEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
++|+|+|+|++|||++||+.|++++.+. |+++.++++.+.. .+++ ..++.+||+||||||
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~-Gv~~~~~~~~d~~~~~~s~i----------------~~~i~~~~~ivlGsp 328 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEK-GFTPVVYKFSDEERPAISEI----------------LKDIPDSEALIFGVS 328 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHT-TCEEEEEEECSSCCCCHHHH----------------HHHSTTCSEEEEEEC
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhc-CCceEEEEeccCCCCCHHHH----------------HHHHHhCCeEEEEeC
Confidence 4799999999999999999999999994 9988877776543 2322 357889999999999
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCcccccc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK 159 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
||+++++++++.|++.+... .++||++++|+++||++++.+. +.+.|...|+++++.....
T Consensus 329 T~~~~~~p~~~~~l~~l~~~----~~~~K~~~~FGSyGWsg~a~~~----~~~~l~~~~~~~v~~~~~~----------- 389 (410)
T 4dik_A 329 TYEAEIHPLMRFTLLEIIDK----ANYEKPVLVFGVHGWAPSAERT----AGELLKETKFRILSFTEIK----------- 389 (410)
T ss_dssp CTTSSSCHHHHHHHHHHHHH----CCCCCEEEEEEECCCCCTTSCC----HHHHHTTSSCEEEEEEEEC-----------
T ss_pred CcCCcCCHHHHHHHHHHHhc----ccCCCEEEEEECCCCCcHHHHH----HHHHHHHCCCEEECcEEEE-----------
Confidence 99999999999999988533 6899999999999998766543 5688889999998754321
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028847 160 GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 193 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 193 (203)
...++++++++|.+++++.+
T Consensus 390 --------------~~~~de~~lee~~~~~~~~l 409 (410)
T 4dik_A 390 --------------GSNMDERKIEEAISLLKKEL 409 (410)
T ss_dssp --------------STTCCHHHHHHHHHHHHHHH
T ss_pred --------------CCCCCHHHHHHHHHHHHHhh
Confidence 03578888999988887654
No 39
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.87 E-value=2.8e-22 Score=160.44 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=93.0
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC--C-C----------------C
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP--K-S----------------D 59 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~--~-~----------------~ 59 (203)
||||||||++|+. |+|.+|++.+.+.+++ .|.+|+++|+.+..+.+|+.+..+.. . . .
T Consensus 1 ~MmkiLiI~gSpr~~s~t~~la~~~~~~l~~-~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKK-KGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeCCCCccHHHHHHHHHHHHHHh-CCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 4569999999985 7899999999999988 48999999999987766665543321 0 0 0
Q ss_pred CCC---CChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCC
Q 028847 60 VPT---ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 60 ~~~---~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~ 119 (203)
.+. ...+++.+||+|||++|+||+++|+.||+|||++.... ..+.++||++++++|+|+.
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred CcHHHHHHHHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 010 12457999999999999999999999999999986431 1356899999999998875
No 40
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.87 E-value=2.1e-21 Score=162.82 Aligned_cols=147 Identities=23% Similarity=0.259 Sum_probs=122.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|++|||+++|+.|++.+.+ .|++++++++.+.+...+ .+++.+||+|||+||+|+
T Consensus 253 ~kv~i~y~S~~Gnt~~lA~~i~~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~ii~gsp~~~ 315 (402)
T 1e5d_A 253 NKVVIFYDSMWHSTEKMARVLAESFRD-EGCTVKLMWCKACHHSQI----------------MSEISDAGAVIVGSPTHN 315 (402)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEETTTSCHHHH----------------HHHHHTCSEEEEECCCBT
T ss_pred CcEEEEEECCChhHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHH----------------HHHHHHCCEEEEECCccC
Confidence 589999999999999999999999987 488999999987544332 346899999999999999
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+++++.+++|++++.. ..++||++++|+++++.+ .+...+.+.|...|+.+++.++. +.
T Consensus 316 ~~~~~~~~~~l~~l~~----~~l~~k~~~~f~t~g~~~----~a~~~l~~~l~~~G~~~~~~~~~----------~~--- 374 (402)
T 1e5d_A 316 NGILPYVAGTLQYIKG----LRPQNKIGGAFGSFGWSG----ESTKVLAEWLTGMGFDMPATPVK----------VK--- 374 (402)
T ss_dssp TBCCHHHHHHHHHHHH----TCCCSCEEEEEEEESSSC----HHHHHHHHHHHHTTCBCCSCCEE----------EE---
T ss_pred CCchHHHHHHHHHhhh----cccCCCEEEEEEcCCCcc----HHHHHHHHHHHHCCCEEecCceE----------Ee---
Confidence 9999999999999853 268999999999988742 23567888899999998865432 11
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028847 163 PYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 199 (203)
Q Consensus 163 ~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
+.|++++++.++++++++++.+++.
T Consensus 375 ------------~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 375 ------------NVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp ------------SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------eCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999887653
No 41
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.87 E-value=9.3e-22 Score=150.17 Aligned_cols=139 Identities=18% Similarity=0.122 Sum_probs=100.7
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC--CCCCC---CCChhhhhccCeEEE
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP--KSDVP---TITPNELAEADGILL 76 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~--~~~~~---~~~~~~l~~aD~iii 76 (203)
|||||++|+ .++|.+|++.+++.+ + .|.+|+++|+.+.++.+|+.+..|.. ....+ ....+++.+||+|||
T Consensus 2 kiLiI~gspr~~s~t~~l~~~~~~~~-~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~ 79 (196)
T 3lcm_A 2 KILIVYTHPNPTSFNAEILKQVQTNL-S-KEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIF 79 (196)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHS-C-TTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEE
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHh-c-CCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEE
Confidence 899999997 468999999999999 5 58999999999887766665433211 00011 113678999999999
Q ss_pred ecccCCCCcHHHHHHHHHHhcccc---c------ccCCCCCeEEEEEccCCC--CC--CchhHHHHHHHHHHHcCcEEec
Q 028847 77 GFPTRFGMMAAQFKAFLDATGGLW---R------SQQLAGKPAGIFYSTGSQ--GG--GQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 77 gsP~y~~~~~~~lk~fld~~~~~~---~------~~~l~gK~~~~~~t~g~~--~~--~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
++|+||+++|+.||+|||++.... . .+.++||++.+++|+|++ .. +.......+...+...|+..++
T Consensus 80 ~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~~ 159 (196)
T 3lcm_A 80 IFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPVK 159 (196)
T ss_dssp EEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCEE
T ss_pred ECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCceee
Confidence 999999999999999999995431 1 246899999999999875 11 0001113344555566777665
Q ss_pred C
Q 028847 144 I 144 (203)
Q Consensus 144 ~ 144 (203)
.
T Consensus 160 ~ 160 (196)
T 3lcm_A 160 L 160 (196)
T ss_dssp E
T ss_pred E
Confidence 3
No 42
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.87 E-value=4.2e-21 Score=144.48 Aligned_cols=163 Identities=19% Similarity=0.153 Sum_probs=118.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|++|||+++|+.|++.+.. +++++++++.+. ..+++.++|.||||+|+|+
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~--~~~v~~~~~~~~--------------------~~~~l~~~d~iilg~pt~~ 58 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD--ETMSDALNVNRV--------------------SAEDFAQYQFLILGTPTLG 58 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT--TTBCCCEEGGGC--------------------CHHHHHTCSEEEEEEECBT
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC--CCceEEEEhhhC--------------------CHHHHhcCCEEEEEeccCC
Confidence 389999999999999999999999965 456778887653 2457889999999999998
Q ss_pred -CCcH--------HHHHHHHHHhcccccccCCCCCeEEEEEccCCC-CC-CchhHHHHHHHHHHHcCcEEecCCCCCCCC
Q 028847 83 -GMMA--------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMIFVPIGYTFGAG 151 (203)
Q Consensus 83 -~~~~--------~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~ 151 (203)
|.+| ..++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|+.+++.....|.+
T Consensus 59 ~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~ 134 (179)
T 1yob_A 59 EGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYE 134 (179)
T ss_dssp TTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCC
T ss_pred CCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCC
Confidence 8999 899999999853 36899999999998764 22 223446777888888999999866555543
Q ss_pred CCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028847 152 MSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 195 (203)
Q Consensus 152 ~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~ 195 (203)
+.....+..+.+.|. .. +. .++++.+.+++++|++++...
T Consensus 135 ~~~s~~~~~~~f~gl-~~--d~-~~~~~~~~~~i~~w~~~l~~~ 174 (179)
T 1yob_A 135 FESSEAVVDGKFVGL-AL--DL-DNQSGKTDERVAAWLAQIAPE 174 (179)
T ss_dssp CSCCTTBSSSSBSSE-EE--CT-TTCGGGHHHHHHHHHHHHGGG
T ss_pred cccchhhhcCceecc-cc--CC-CCCCcccHHHHHHHHHHHHHH
Confidence 322211221111111 11 11 234567899999999988643
No 43
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.87 E-value=1.9e-21 Score=162.80 Aligned_cols=145 Identities=25% Similarity=0.327 Sum_probs=120.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|++|||+++|+.+++.+.+ .|++++++++.+.....+ .+++.++|+|||++|+|+
T Consensus 252 ~~i~i~y~S~~GnT~~lA~~ia~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~ii~g~p~y~ 314 (398)
T 1ycg_A 252 AKAVIAYDTMWLSTEKMAHALMDGLVA-GGCEVKLFKLSVSDRNDV----------------IKEILDARAVLVGSPTIN 314 (398)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGSCHHHH----------------HHHHHHCSEEEEECCCBT
T ss_pred CeEEEEEECCccHHHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHH----------------HHHHHHCCEEEEECCccC
Confidence 489999999999999999999999987 488999999986544332 346889999999999999
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC-CCCCCCCCccccccCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG-YTFGAGMSEMEKVKGG 161 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~-~~~~~~~~~~~~~~~~ 161 (203)
+++|+.+++|++++... .++||++++|+++|+.+ . +...+...|...|+.+++.+ +. +.
T Consensus 315 ~~~~~~~~~~l~~l~~~----~~~~k~~~~~~s~g~~~-~---a~~~l~~~l~~~g~~~~~~~~~~----------~~-- 374 (398)
T 1ycg_A 315 NDILPVVSPLLDDLVGL----RPKNKVGLAFGAYGWGG-G---AQKILEERLKAAKIELIAEPGPT----------VQ-- 374 (398)
T ss_dssp TBCCGGGHHHHHHHHHH----CCSSCEEEEEEEESSSC-C---HHHHHHHHHHHTTCEESCSSCCE----------EE--
T ss_pred ccchHHHHHHHHHHhcc----ccCCCEEEEEEeCCCch-H---HHHHHHHHHHHCCeEEecCceEE----------Ee--
Confidence 99999999999998532 68999999999998742 2 25667888999999998754 43 11
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028847 162 SPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 197 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 197 (203)
..|+++++++++++++++++.++
T Consensus 375 -------------~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 375 -------------WVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------cCCCHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999998753
No 44
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.86 E-value=2e-21 Score=151.13 Aligned_cols=172 Identities=10% Similarity=0.020 Sum_probs=118.0
Q ss_pred CceEEEEEecCc-----chHHHHHHHHHHHhhcc-CCc-eEEEEEcCCCCchhHh----hhcCC--CCCCCCC-------
Q 028847 2 ATKVYIVYYSMY-----GHVEKLAEEIQKGAASV-EGV-EAKLWQVPETLSEDVL----GKMGA--GPKSDVP------- 61 (203)
Q Consensus 2 m~kilIiy~S~~-----G~T~~la~~i~~~l~~~-~g~-~v~~~~l~~~~~~~~~----~~~~~--~~~~~~~------- 61 (203)
|||||+|++|+. |+|.+|++.+.+.+++. +|. +|+++||.+.+++.|. .+..+ ..+...|
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d 83 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTE 83 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHH
Confidence 459999999975 78999999999999874 367 9999999987654332 22111 0111111
Q ss_pred --CCChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---c------ccCC-CCCeEEEEEccCCCCCCc------
Q 028847 62 --TITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---R------SQQL-AGKPAGIFYSTGSQGGGQ------ 123 (203)
Q Consensus 62 --~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---~------~~~l-~gK~~~~~~t~g~~~~~~------ 123 (203)
....+++.+||+|||++|+||+++|+.||+|||++.... . .+.+ +||++.+++|+|+..++.
T Consensus 84 ~~~~l~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~ 163 (223)
T 3u7i_A 84 RMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDV 163 (223)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHT
T ss_pred HHHHHHHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchH
Confidence 113678999999999999999999999999999986531 0 1346 899999999988764331
Q ss_pred hhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 124 ETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 124 ~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
......+...|...|+..+..-...+. + ..+.++.++++++-++++++..
T Consensus 164 ~~~~~~l~~~l~~~G~~~~~~i~~~g~---------------------~--~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 164 EYSHKYLKAMFNFLGIEDYQIVRAQGT---------------------A--VLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEEECCT---------------------T--TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCceeEEEEEcCc---------------------c--CCCHHHHHHHHHHHHHHHHHHH
Confidence 122344566777789988754322110 0 2245666777777777776544
No 45
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.86 E-value=3e-21 Score=146.56 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=97.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|||||||++|+..++.++++.+++++++. |.+|+++|+.+..++. .++.. ...+++.+||.|||++|+|
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~-g~ev~~~dL~~~~~~~---------~~dv~-~~~~~l~~AD~iv~~~P~y 69 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQH-TDRFTVHELYAVYPQG---------KIDVA-AEQKLIETHDSLVWQFPIY 69 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTC-TTTEEEEEHHHHCTTC---------CCCHH-HHHHHHHTSSSEEEEEECB
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhC-CCeEEEEEchhcCCCC---------chhHH-HHHHHHHhCCEEEEEcChh
Confidence 34999999999766557899999999884 8899999998754321 01111 1367899999999999999
Q ss_pred CCCcHHHHHHHHHHhcccc---c--ccCCCCCeEEEEEccCCCC-----CC-----chhHHHHHHHHHHHcCcEEecCC
Q 028847 82 FGMMAAQFKAFLDATGGLW---R--SQQLAGKPAGIFYSTGSQG-----GG-----QETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~---~--~~~l~gK~~~~~~t~g~~~-----~~-----~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
|+++|+.||+|||++.... . .+.++||++.+++|+|++. ++ .+..+..+...+...|+..++..
T Consensus 70 ~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~ 148 (192)
T 3f2v_A 70 WFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPF 148 (192)
T ss_dssp TTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCE
T ss_pred hcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeE
Confidence 9999999999999985431 1 1478999999999988751 11 11112234556777899988654
No 46
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.86 E-value=1.6e-20 Score=140.47 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=115.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC-
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF- 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~- 82 (203)
|++|+|+|++|||+++|+.|++.+.+. +++++++.+.. ...++.++|.||||+|+|+
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~---~~~~~~~~~~~-------------------~~~~l~~~d~ii~g~pt~~~ 58 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK---ADAPIDVDDVT-------------------DPQALKDYDLLFLGAPTWNT 58 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG---BCCCEEGGGCS-------------------CGGGGGGCSEEEEEEECCST
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC---CcEEEehhhcC-------------------ChhHHccCCEEEEEEeecCC
Confidence 689999999999999999999999762 56777776530 1347889999999999998
Q ss_pred CCc----HHHHHHHH-HHhcccccccCCCCCeEEEEEccCCCCCC--chhHHHHHHHHHHHcCcEEecCCCCCCCCCCcc
Q 028847 83 GMM----AAQFKAFL-DATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEM 155 (203)
Q Consensus 83 ~~~----~~~lk~fl-d~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~ 155 (203)
|.+ |..++.|+ +++.. ..++||++++|++++..+.+ ...++..+.+.|.+.|+.+++.....|++...+
T Consensus 59 G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s 134 (173)
T 2fcr_A 59 GADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEES 134 (173)
T ss_dssp TCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCC
T ss_pred CCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccc
Confidence 899 99999999 98752 37899999999998764221 223467788888899999998655555433222
Q ss_pred ccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 156 EKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
..+..+.+.|. ... ..+.++.+.+++++|++++...+
T Consensus 135 ~~~~~~~~~~l-~~~---~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 135 KSVRDGKFLGL-PLD---MVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp TTEETTEESSE-EEE---TTTCSSCHHHHHHHHHHHHHHHH
T ss_pred hhhhCCeeeee-eec---CCCCccccHHHHHHHHHHHHHHh
Confidence 11111111121 111 11234567889999999887543
No 47
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.85 E-value=1.2e-22 Score=148.15 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=107.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|.+|||+++|+.|++.+.+ .|+++++++..+ .+++.++|.|||++|+|
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~----------------------~~~l~~~d~vi~g~pt~ 57 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEE-AGFTTETLHGPL----------------------LEDLPASGIWLVISSTH 57 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHH-TTCCEEEECCTT----------------------SCSSCSEEEEEEECCTT
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEecCCC----------------------HHHcccCCeEEEEECcc
Confidence 3499999999999999999999999987 488888775432 23577899999999999
Q ss_pred -CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC----CCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccc
Q 028847 82 -FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG----SQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEME 156 (203)
Q Consensus 82 -~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g----~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~ 156 (203)
++.+|+.++.|++.+... ...+++|++++|++++ +.+.. ...+.+.|.+.|+.++.....+
T Consensus 58 g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a----~~~l~~~l~~~G~~~~~~~~~~-------- 123 (147)
T 2hna_A 58 GAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFCGA----IDKLEAELKNSGAKQTGETLKI-------- 123 (147)
T ss_dssp TTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSSSC----TTHHHHHHHHHTCEECSSCBCC--------
T ss_pred CCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHHHH----HHHHHHHHHHcCCeEeeeeEEE--------
Confidence 899999999999998421 1268899999999543 32222 3346788888899988755431
Q ss_pred cccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028847 157 KVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 196 (203)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~ 196 (203)
...|++++.++++++++++++.+
T Consensus 124 -----------------d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 124 -----------------NILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp -----------------CCSSCCSSCSCCHHHHHHHHHHH
T ss_pred -----------------ecCCCCCcHHHHHHHHHHHHHHh
Confidence 13455667788888888887654
No 48
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.85 E-value=2.7e-20 Score=137.95 Aligned_cols=124 Identities=19% Similarity=0.341 Sum_probs=85.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC--chhHhhhcC-------CCCCC-CCCCC--Chhhhh
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL--SEDVLGKMG-------AGPKS-DVPTI--TPNELA 69 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~--~~~~~~~~~-------~~~~~-~~~~~--~~~~l~ 69 (203)
|+|++|||+|++|||+++|+.|++.+.. + ++++.... +...+..+. ....+ ..|.. ...++.
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~----~--~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 77 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGA----D--LYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPE 77 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTC----E--EEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGG
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCC----C--eEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChh
Confidence 5799999999999999999999999842 3 34443221 110000000 00001 22322 245799
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
+||.||||+|+|++++|+.++.|++++ .++||++++|+|+|+.+.+ .++..+.+.+. +..+.
T Consensus 78 ~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~g--~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 78 KYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGSGIG--NCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCCSH--HHHHHHHHHCT--TSEEC
T ss_pred hCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCCcc--HHHHHHHHHcC--CCEee
Confidence 999999999999999999999999987 6899999999999985433 23455555554 56665
No 49
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.84 E-value=1.6e-19 Score=138.60 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=95.4
Q ss_pred ceEEEEEecCc------chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 3 TKVYIVYYSMY------GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 3 ~kilIiy~S~~------G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
.|||||++|+. ++|++|++.+++.+++. |.+|+++|+.+.. +.. ...+++.+||+|||
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~-g~~v~~~dL~~~~--d~~-------------~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL-GHDVRIVRADSDY--DVK-------------AEVQNFLWADVVIW 76 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHT-TCEEEEEESSSCC--CHH-------------HHHHHHHHCSEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc-CCEEEEEeCCccc--cHH-------------HHHHHHHhCCEEEE
Confidence 48999999987 89999999999999985 8899999998621 111 13679999999999
Q ss_pred ecccCCCCcHHHHHHHHHHhccc-c-------------------cccCCCCCeEEEEEccCCCCC-----C-------ch
Q 028847 77 GFPTRFGMMAAQFKAFLDATGGL-W-------------------RSQQLAGKPAGIFYSTGSQGG-----G-------QE 124 (203)
Q Consensus 77 gsP~y~~~~~~~lk~fld~~~~~-~-------------------~~~~l~gK~~~~~~t~g~~~~-----~-------~~ 124 (203)
++|+||+++|++||+|||++... | ..+.++||++++++|+|++.. + ..
T Consensus 77 ~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~ 156 (204)
T 2amj_A 77 QMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVD 156 (204)
T ss_dssp EEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHH
T ss_pred ECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHH
Confidence 99999999999999999986321 1 123689999999999887421 1 11
Q ss_pred hHHHHHHHHHHHcCcEEecC
Q 028847 125 TTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 125 ~~~~~~~~~l~~~g~~~v~~ 144 (203)
..+..+...|...|+..++.
T Consensus 157 ~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 157 GVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp HHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHcCCeecce
Confidence 11123456677789988754
No 50
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.83 E-value=3.5e-20 Score=144.52 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=90.2
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcC---CCCC----------------CCCC
Q 028847 3 TKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMG---AGPK----------------SDVP 61 (203)
Q Consensus 3 ~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~---~~~~----------------~~~~ 61 (203)
||||||++|+ .|+|.+|++.+.+.+++. |.+|+++||.+..+.+|+.+.. +... ...+
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~-g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 80 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQ-GCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA 80 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHH-TCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCc
Confidence 3999999998 477999999999999885 8999999999987666654321 1100 0001
Q ss_pred C---CChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccc---------cccCCCCCeEEEEEccCCC
Q 028847 62 T---ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 62 ~---~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~ 119 (203)
. ...+++.+||+|||++|+||+++|+.||+|||++.... ..+.++||++.+++|+|+.
T Consensus 81 dd~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 81 SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHHHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 1 12567999999999999999999999999999985431 1357899999999998864
No 51
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.83 E-value=4.3e-20 Score=136.95 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=105.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|.+|||+++|+.|++.+ |. ++++++.+.. ..++.++|.||||+|+|
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l----g~-~~~~~~~~~~--------------------~~~l~~~d~ii~g~pt~ 55 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI----GN-AEVVDVAKAS--------------------KEQFNSFTKVILVAPTA 55 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH----CS-EEEEEGGGCC--------------------HHHHTTCSEEEEEEEEE
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc----CC-cEEEecccCC--------------------HhHHhhCCEEEEEECCc
Confidence 34999999999999999999999998 44 8888887532 34688999999999999
Q ss_pred C-CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC-CC-CchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccc
Q 028847 82 F-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 82 ~-~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+ +.+|..++.|++.+.. ..++||++++|++++.. ++ ....+...+.+.|.. +.+++...+.++.......+
T Consensus 56 ~~g~~p~~~~~f~~~l~~----~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~ 129 (164)
T 2bmv_A 56 GAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAV 129 (164)
T ss_dssp TTTEECHHHHHHHTTCCT----HHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTE
T ss_pred CCCcCcHHHHHHHHHHhh----hhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhh
Confidence 6 6788889999998752 24789999999996542 22 112235566667765 67766432223221111111
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
..+...| ... ...++++++.+++++|++++.+
T Consensus 130 ~~~~~~~-l~~---~~~~~~~~~~~~~~~w~~~l~~ 161 (164)
T 2bmv_A 130 EGGKFVG-LVI---DEDNQDDLTDERISKWVEQVKG 161 (164)
T ss_dssp ETTEESS-EEE---CTTTCGGGHHHHHHHHHHHHTT
T ss_pred hcCcccC-ccC---CCCCccccCHHHHHHHHHHHHH
Confidence 1100001 111 1123446789999999999864
No 52
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.82 E-value=2.2e-19 Score=134.16 Aligned_cols=124 Identities=16% Similarity=0.337 Sum_probs=85.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCc--hhHhhhcC-------C-CCCCCCCCC--Chhhhh
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS--EDVLGKMG-------A-GPKSDVPTI--TPNELA 69 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~--~~~~~~~~-------~-~~~~~~~~~--~~~~l~ 69 (203)
|||++|||+|.+|||+++|+.|++.+.. +++++....+ ...+..+. . ...+..|.+ ...++.
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~l~~------d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAAVGG------DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCC------CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 4599999999999999999999999942 3445543321 10000000 0 011122222 235789
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
+||.||||+|+|++++|+.++.||+++ .++||++++|+|+|+.+.+ .++..+.+.+. +..+.
T Consensus 87 ~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~g--~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 87 TYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSSIG--NSATVLKKTYP--DLNWK 148 (171)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCCSH--HHHHHHHHHST--TSEEC
T ss_pred HCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCCcc--hHHHHHHHHcC--CCeec
Confidence 999999999999999999999999998 5899999999999875433 23555555554 55553
No 53
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.82 E-value=4e-19 Score=137.09 Aligned_cols=128 Identities=15% Similarity=0.028 Sum_probs=96.4
Q ss_pred CceEEEEEecCc------chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEE
Q 028847 2 ATKVYIVYYSMY------GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGIL 75 (203)
Q Consensus 2 m~kilIiy~S~~------G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 75 (203)
|||||||++|+. ++|.+|++.+++.+++ .|.+|+++++.+.. ++. ...+++.+||.||
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~-~g~ev~~~dL~~~~--Dv~-------------~~~~~l~~aD~iv 88 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE-SGHQVKITTVDQGY--DIE-------------SEIENYLWADTII 88 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH-TTCCEEEEEGGGCC--CHH-------------HHHHHHHHCSEEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh-CCCEEEEEECCCcc--CHH-------------HHHHHHHhCCEEE
Confidence 469999999983 5799999999999988 48999999997521 011 1267899999999
Q ss_pred EecccCCCCcHHHHHHHHHHhccc-c-------------------cccCCCCCeEEEEEccCCCC-----CCc---hhHH
Q 028847 76 LGFPTRFGMMAAQFKAFLDATGGL-W-------------------RSQQLAGKPAGIFYSTGSQG-----GGQ---ETTP 127 (203)
Q Consensus 76 igsP~y~~~~~~~lk~fld~~~~~-~-------------------~~~~l~gK~~~~~~t~g~~~-----~~~---~~~~ 127 (203)
|++|+||+++|+.||+|+|++... + ..+.++||++.+++|+|++. ++. ...+
T Consensus 89 ~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~ 168 (218)
T 3rpe_A 89 YQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGV 168 (218)
T ss_dssp EEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHH
T ss_pred EECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCH
Confidence 999999999999999999998432 1 12468999999999998752 110 1112
Q ss_pred H----HHHHHHHHcCcEEecCC
Q 028847 128 L----TAITQLVHHGMIFVPIG 145 (203)
Q Consensus 128 ~----~~~~~l~~~g~~~v~~~ 145 (203)
. .+...+...|+..++..
T Consensus 169 ~~~l~p~~~~l~f~G~~~l~~~ 190 (218)
T 3rpe_A 169 DGVYLPFHKANQFLGMKPLPTF 190 (218)
T ss_dssp HHHTHHHHHHHHHTTCEECCCE
T ss_pred HHHHHHHHHHHHhCCCEEeceE
Confidence 2 23556677899988653
No 54
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.82 E-value=2.5e-20 Score=136.52 Aligned_cols=128 Identities=28% Similarity=0.321 Sum_probs=82.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC-CCch---hHhhhcC-CCCC-CCCCCC--ChhhhhccC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE-TLSE---DVLGKMG-AGPK-SDVPTI--TPNELAEAD 72 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~-~~~~---~~~~~~~-~~~~-~~~~~~--~~~~l~~aD 72 (203)
||+|++|+|+|.+|||+++|+.|++++.. .++.-+++.. ..+. .+..... .... ...|.. ...++.+||
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d 78 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKD---SELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYD 78 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTT---CEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCS
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccC---CCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCC
Confidence 78899999999999999999999999853 2322222211 1111 1111000 0000 122221 245799999
Q ss_pred eEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEe
Q 028847 73 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 142 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v 142 (203)
.||||+|+|++++|+.++.|++++. .+.+|++++|+++|+..++. ...+.+.+. +..+.
T Consensus 79 ~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~g~~---~~~l~~~~~--~~~~~ 137 (151)
T 3edo_A 79 LILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNHKAY---VSHFNEWAD--GLNVI 137 (151)
T ss_dssp EEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCHHHH---HHHHHHHTT--TSEEE
T ss_pred EEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCCCcH---HHHHHHHcC--CCeee
Confidence 9999999999999999999999984 56778777777777642222 344445553 55554
No 55
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.80 E-value=5.5e-19 Score=141.18 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=90.6
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCC--CCCC----------------CCC
Q 028847 3 TKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAG--PKSD----------------VPT 62 (203)
Q Consensus 3 ~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~--~~~~----------------~~~ 62 (203)
||||||++|+. ++|.+|++.+.+++++. |.+|+++||.+..+++++.+..+. .... .+.
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~-G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQA-GHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSA 101 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHT-TCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHC-CCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcH
Confidence 49999999984 78999999999999984 899999999998887776543321 1100 010
Q ss_pred ---CChhhhhccCeEEEecccCCCCcHHHHHHHHHHhccc-----------------ccccCCCCCeEEEEEccCCC
Q 028847 63 ---ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-----------------WRSQQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 63 ---~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~-----------------~~~~~l~gK~~~~~~t~g~~ 119 (203)
...+++.+||.|||++|+||+++|+.||.|||++... +..+.++||++.+++|.|++
T Consensus 102 dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 102 DIVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred HHHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 1246789999999999999999999999999998532 11246889999999998864
No 56
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.80 E-value=2.1e-19 Score=136.39 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=110.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|.+|||+++|+.|++.+.+ .|++++++++.+. .+++.++|.|||++|+|+
T Consensus 22 ~kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~v~~l~~~---------------------~~~l~~~d~vi~g~~Ty~ 79 (191)
T 1bvy_F 22 TPLLVLYGSNMGTAEGTARDLADIAMS-KGFAPQVATLDSH---------------------AGNLPREGAVLIVTASYN 79 (191)
T ss_dssp CCEEEEEECSSSHHHHHHHHHHHHHHT-TTCCCEEEEGGGS---------------------TTCCCSSSEEEEEECCBT
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHHh-CCCceEEeeHHHh---------------------hhhhhhCCeEEEEEeecC
Confidence 589999999999999999999999987 4889999988762 125778999999999999
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCC-CchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG-GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGG 161 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~-~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
|.+|..++.|++++... ....++||++++|+++....+ ..-.+...+.+.|...|+.++..... +.
T Consensus 80 G~~p~~~~~fl~~L~~~-~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~----------~d-- 146 (191)
T 1bvy_F 80 GHPPDNAKQFVDWLDQA-SADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGE----------AD-- 146 (191)
T ss_dssp TBCCTTTHHHHHHHHTC-CSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEE----------EE--
T ss_pred CCcCHHHHHHHHHHHhc-cchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEE----------Ee--
Confidence 99999999999998532 112589999999997754332 11223566778888888877643211 10
Q ss_pred CCCccceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 028847 162 SPYGAGTFAGDGSRQPSELELAQ-AFHQGKYFAGITK 197 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~p~~~~~~~-~~~~g~~l~~~~~ 197 (203)
. +++++. +++|++.|.+.+.
T Consensus 147 -------------~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 147 -------------A---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp -------------T---TSCHHHHHHHHHHHHHHHHH
T ss_pred -------------c---CCChHHHHHHHHHHHHHHhc
Confidence 1 346666 9999999888775
No 57
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.76 E-value=4.9e-18 Score=127.28 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=88.4
Q ss_pred eEEEEEecCc---chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSMY---GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~---G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||||++|+. +.+.+++..+++.+ .+|+++|+.+ .+ ++. ...+++.+||.|||++|+
T Consensus 2 kiLii~ghP~~~~S~~~~~l~~~~~~~-----~~v~v~dL~~-~~-D~~-------------~~~~~l~~aD~iV~~~P~ 61 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFKAAIENF-----SNVTWHPLVA-DF-NVE-------------QEQSLLLQNDRIILEFPL 61 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHHHHHTTC-----TTEEEEECCT-TC-CHH-------------HHHHHHHTCSEEEEEEEC
T ss_pred eEEEEEcCCCcccCHHHHHHHHHHhcC-----CCEEEEECCC-cc-cHH-------------HHHHHHHhCCEEEEECCh
Confidence 8999999985 66777777766655 2689999987 11 111 126799999999999999
Q ss_pred CCCCcHHHHHHHHHHhcccc----cccCCCCCeEEEEEccCCCCC-----C-----chhHHHHHHHHHHHcCcEEecCC
Q 028847 81 RFGMMAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQGG-----G-----QETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~----~~~~l~gK~~~~~~t~g~~~~-----~-----~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
||+++|+.||+|+|++.... ..+.++||++.+++|+|++.. + .+..+..+...+...|+..++..
T Consensus 62 y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~ 140 (177)
T 3ha2_A 62 YWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPIL 140 (177)
T ss_dssp BTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCE
T ss_pred hhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeE
Confidence 99999999999999985431 134789999999999886521 1 11222233445667899987653
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.74 E-value=1.1e-17 Score=140.81 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=107.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
||||||++|+..++..+.+.+++.+.+ ..+++++++.+..|.. .++.. ...+++.+||.|||++|+||
T Consensus 237 mkiLvi~gspr~~ss~~n~~l~~~~~~--~~~v~v~dL~~~~p~~---------~~d~~-~~~~~l~~aD~iv~~~P~yw 304 (413)
T 3l9w_A 237 GMILIIYAHPYPHHSHANKRMLEQART--LEGVEIRSLYQLYPDF---------NIDIA-AEQEALSRADLIVWQHPMQW 304 (413)
T ss_dssp CCEEEEECCSCGGGCSHHHHHHHHHHT--SSSEEEEEHHHHCTTS---------CCCHH-HHHHHHHTCSEEEEEEECBT
T ss_pred CCEEEEEECCCcchHHHHHHHHHHHhc--CCCEEEEEchhhCCCC---------cHHHH-HHHHHHHhCCEEEEECchhh
Confidence 599999999975544466666666654 3478999986543210 01111 13678999999999999999
Q ss_pred CCcHHHHHHHHHHhcccc-----cccCCCCCeEEEEEccCCCCC--------CchhHHHHHHHHHHHcCcEEecCCCCCC
Q 028847 83 GMMAAQFKAFLDATGGLW-----RSQQLAGKPAGIFYSTGSQGG--------GQETTPLTAITQLVHHGMIFVPIGYTFG 149 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~-----~~~~l~gK~~~~~~t~g~~~~--------~~~~~~~~~~~~l~~~g~~~v~~~~~~~ 149 (203)
+++|+.||+|||++.... ....|+||++.+++|+|++.+ +....+..+...+...|+.+++..+..+
T Consensus 305 ~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g 384 (413)
T 3l9w_A 305 YSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHC 384 (413)
T ss_dssp TBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECC
T ss_pred ccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcC
Confidence 999999999999986431 123589999999999876421 1112234556677788999986432210
Q ss_pred CCCCccccccCCCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 028847 150 AGMSEMEKVKGGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~~~p~-~~~~~~~~~~g~~l~~~~~~ 198 (203)
...++ ++-.+.+.++++.|...+.+
T Consensus 385 ------------------------~~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 385 ------------------------TFICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp ------------------------STTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 02333 44466777777777776643
No 59
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.69 E-value=6.4e-16 Score=119.04 Aligned_cols=119 Identities=15% Similarity=-0.022 Sum_probs=95.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR- 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y- 81 (203)
++++|+|+|.+|||+.+|+.|++.+. .|++++++++.+.+ .+++.+++.+||++|+|
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~--~g~~v~v~~l~~~~--------------------~~~l~~~~~vI~~tsTyG 98 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFS--CAFNPKVVCMDKYR--------------------LSCLEEERLLLVVTSTFG 98 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEEGGGCC--------------------GGGGGTCSEEEEEEECBT
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHH--cCCCeEEEEcccCC--------------------HhHhccCCeEEEEEeccC
Confidence 48999999999999999999999985 38899999988753 34678899999999999
Q ss_pred CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 82 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
.|.+|..++.|++.+... ...++|+++++|+.+++.+.........+.+.|...|+..+...
T Consensus 99 ~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~ 160 (219)
T 3hr4_A 99 NGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPM 160 (219)
T ss_dssp TTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCC
T ss_pred CCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCC
Confidence 888999999999988532 12578999999998776543323335667788888999987543
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.65 E-value=2.4e-15 Score=133.85 Aligned_cols=149 Identities=13% Similarity=-0.011 Sum_probs=115.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhh-ccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhcc-CeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAA-SVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEA-DGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~-~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-D~iiigsP 79 (203)
|+|++|+|+|.+|||+.+|+.|++.+. +. |++++++++.+.+ .+++.++ |.|||++|
T Consensus 49 ~~ki~IlY~S~tGnte~~A~~ia~~l~~~~-g~~v~v~~l~~~~--------------------~~~l~~~~~~vi~~~s 107 (682)
T 2bpo_A 49 NKNYLVLYASQTGTAEGFAKAFSKELVAKF-NLNVMCADVENYD--------------------FESLNDVPVIVSIFIS 107 (682)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHHHHHH-CCCEEEEETTSSC--------------------GGGGGGCCSEEEEEEE
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHhHHhc-CCceEEeehHHCC--------------------HHHHhhcCCeEEEEeC
Confidence 459999999999999999999999998 63 8899999998753 3467788 99999999
Q ss_pred cC-CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccc
Q 028847 80 TR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 80 ~y-~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
|| +|.+|..++.|++++.... ...++||++++|+++...+.........+.+.|...|+..+.....+
T Consensus 108 T~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~---------- 176 (682)
T 2bpo_A 108 TYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEA---------- 176 (682)
T ss_dssp CBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEE----------
T ss_pred ccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEE----------
Confidence 99 8999999999999986321 12489999999997654433233345677889999999987654221
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
...+ +...+.++.|+++|...+.+
T Consensus 177 ---------------D~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 177 ---------------DDGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp ---------------ETTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ecCC-cccHHHHHHHHHHHHHHHHh
Confidence 0223 45678899999998876654
No 61
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.50 E-value=2.8e-13 Score=119.30 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=95.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh--ccCeEEEeccc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA--EADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~iiigsP~ 80 (203)
++|+|+|+|.+|||+.+|+.|++.+.+. |++++++++.+.+...+ ..+. +++.+||++|+
T Consensus 19 ~~i~I~YgS~tGnte~~A~~la~~l~~~-g~~~~v~~~~~~~~~~l-----------------~~~~~~~~~~vi~~~sT 80 (618)
T 3qe2_A 19 RNIIVFYGSQTGTAEEFANRLSKDAHRY-GMRGMSADPEEYDLADL-----------------SSLPEIDNALVVFCMAT 80 (618)
T ss_dssp CSEEEEEECSSSHHHHHHHHHHHHGGGG-TCCEEEECGGGSCGGGG-----------------GGGGGSTTCEEEEEEEC
T ss_pred CeEEEEEECChhHHHHHHHHHHHHHHhC-CCceEEechHHcCHHHh-----------------hhcccccCcEEEEEcCc
Confidence 4799999999999999999999999884 88999999877654322 1122 58999999999
Q ss_pred C-CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 81 R-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 81 y-~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
| +|.+|..++.|++.+... ...|+|+++++|+.++..++........+.+.|...|+..+..
T Consensus 81 ~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 81 YGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp BGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred cCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 9 899999999999998531 1479999999999765544322233556677888899988643
No 62
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.49 E-value=6.8e-14 Score=98.07 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC-C
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-G 83 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~-~ 83 (203)
++|+|+|++|||+++|+.|+ +. + + ++.+ +.+ .+|.|||++|+|+ +
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~---~--~---~i~~-----------------------~~~-~~~~ii~g~pt~~~g 46 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP---A--V---QIGE-----------------------DLV-IDEDFILITYTTGFG 46 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC---E--E---ECCT-----------------------TCC-CCSCEEEEECCBTTT
T ss_pred CEEEEECCChhHHHHHHHhc--cc---C--C---CcCc-----------------------ccc-cCCCEEEEEeecCCC
Confidence 37899999999999999998 32 3 2 2211 123 4999999999995 9
Q ss_pred CcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCC-chhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCC
Q 028847 84 MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGS 162 (203)
Q Consensus 84 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~-~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
.+|..++.|++.+ ++|++++|++++...+. .......+.+.+. ... .+. +.
T Consensus 47 ~~p~~~~~fl~~~---------~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~---~~~----------~~--- 98 (119)
T 2xod_A 47 NVPERVLEFLERN---------NEKLKGVSASGNRNWGDMFGASADKISAKYE---VPI---VSK----------FE--- 98 (119)
T ss_dssp BCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCE---EEE----------EE---
T ss_pred cCCHHHHHHHHHc---------CCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---Ccc---EEE----------Ee---
Confidence 9999999999763 47999999886542221 1111233333332 100 111 11
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028847 163 PYGAGTFAGDGSRQPSELELAQAFHQGKYFA 193 (203)
Q Consensus 163 ~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 193 (203)
..|+++|++++++++++++
T Consensus 99 ------------~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 99 ------------LSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHT
T ss_pred ------------cCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999875
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.44 E-value=2.1e-12 Score=114.96 Aligned_cols=147 Identities=14% Similarity=-0.086 Sum_probs=109.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR- 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y- 81 (203)
+|++|+|+|.+|||+.+|+.|++.+.. |.+++++++.+++ ..++..++.|||++|||
T Consensus 12 ~k~~IlY~S~TG~te~~A~~l~~~l~~--~~~~~v~~m~~~d--------------------~~~l~~~~~vl~vtsT~G 69 (688)
T 1tll_A 12 VKATILYATETGKSQAYAKTLCEIFKH--AFDAKAMSMEEYD--------------------IVHLEHEALVLVVTSTFG 69 (688)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHTT--TSEEEEEETTTSC--------------------TTSGGGCSEEEEEECCBT
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHhc--CCCcEEeecccCC--------------------hhHhccCceEEEEEcccC
Confidence 379999999999999999999999963 7899999998753 33577899999999999
Q ss_pred CCCcHHHHHHHHHHhcccc----------------------------------------cccCCCCCeEEEEEccCCCCC
Q 028847 82 FGMMAAQFKAFLDATGGLW----------------------------------------RSQQLAGKPAGIFYSTGSQGG 121 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~~~~----------------------------------------~~~~l~gK~~~~~~t~g~~~~ 121 (203)
+|.+|..+..|++.+.... ....|.|+++++|+.+...+.
T Consensus 70 ~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~ 149 (688)
T 1tll_A 70 NGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYP 149 (688)
T ss_dssp TTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSS
T ss_pred CCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchH
Confidence 9999999999998875320 012588999999997754433
Q ss_pred CchhHHHHHHHHHHHcCcEEecCCCCCCCCCCccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028847 122 GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 198 (203)
Q Consensus 122 ~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 198 (203)
..-.....+.+.|...|+..+...... ... ..+.+.++.|++.+...+.+
T Consensus 150 ~F~~~~k~ld~~L~~lGa~rl~~~~~~-------------------------D~~--~g~e~~f~~W~~~~~~~l~~ 199 (688)
T 1tll_A 150 HFCAFGHAVDTLLEELGGERILKMREG-------------------------DEL--CGQEEAFRTWAKKVFKAACD 199 (688)
T ss_dssp STTHHHHHHHHHHHHTTCEESSCCEEE-------------------------ETT--TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCceeecceee-------------------------ccC--CCcHHHHHHHHHHHHHHHHH
Confidence 222335667788888998887543210 011 13567799999998876644
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.22 E-value=2e-11 Score=87.68 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=78.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-C
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-F 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
+++|+|+|.+|||+.+|+.|++. . .+++.+ .+...|.+||++|+| .
T Consensus 10 ~i~I~Y~S~TGNt~~vA~~l~~~-------~--~~~i~~------------------------~~~~~~~~ilv~pTyG~ 56 (139)
T 1rlj_A 10 MVQIIFDSKTGNVQRFVNKTGFQ-------Q--IRKVDE------------------------MDHVDTPFVLVTYTTNF 56 (139)
T ss_dssp CCEEEECCSSSHHHHHHTTSCCS-------E--EEETTS------------------------CSCCCSCEEEEECCBGG
T ss_pred EEEEEEECCChhHHHHHHHhccc-------c--ceEecc------------------------ccccCCCEEEEEcCcCC
Confidence 68999999999999999987421 1 223321 244568899999999 7
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHH-HHcCcEEecCCCCCCCCCCccccccCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL-VHHGMIFVPIGYTFGAGMSEMEKVKGG 161 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l-~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
|.+|..+..||+.. .++.++++++++...+.... ...+.+ ...+..+.. .+ .
T Consensus 57 G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~---~a~~~i~~~~~~~~~~-~~------------e-- 109 (139)
T 1rlj_A 57 GQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFA---KSADTISRQYQVPILH-KF------------E-- 109 (139)
T ss_dssp GBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTT---HHHHHHHHHHTCCEEE-EE------------E--
T ss_pred CcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHH---HHHHHHHHHcCCCCcc-eE------------E--
Confidence 99999999999653 24678888777653322211 111222 334543321 11 1
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 162 SPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
..++++|.++++++.+++..
T Consensus 110 -------------l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 110 -------------LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp -------------TTCCHHHHHHHHHHHHHHHH
T ss_pred -------------EcCCHHHHHHHHHHHHHHHH
Confidence 34788999999999998874
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.04 E-value=2.3e-10 Score=82.54 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=75.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC--
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-- 82 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~-- 82 (203)
.+|+|.|.+|||++.++.+.. . ..+ +++.+ .+.+...+.+|+++|||.
T Consensus 23 ~ivYfsS~TGNT~rFv~kL~~-----~--~~~-I~~~~----------------------~~~~~~~ep~vlv~PTYg~g 72 (153)
T 3n3a_C 23 QLVYFSSSSENTQRFIERLGL-----P--AVR-IPLNE----------------------RERIQVDEPYILIVPSYGGG 72 (153)
T ss_dssp CEEECCCTTCHHHHHHHHHCS-----C--CEE-CCSST----------------------TCCCCCCSCEEEEEECCTTS
T ss_pred eEEEEECCCcCHHHHHHHhCC-----c--ccc-ccccc----------------------CcccccCCCEEEEEeccCCC
Confidence 344455679999999988721 1 121 12211 113456789999999997
Q ss_pred ---CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCch-hHHHHHHHHHHHcCcEEecCCCCCCCCCCccccc
Q 028847 83 ---GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQE-TTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKV 158 (203)
Q Consensus 83 ---~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~-~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
|.+|.++..||+... ..++..++++++....+... .+...+.+ +.+..++ +. +
T Consensus 73 ~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~---k~~vP~l---~k----------f 129 (153)
T 3n3a_C 73 GTAGAVPRQVIRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIAR---KCGVPWL---YR----------F 129 (153)
T ss_dssp SSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHH---HHTCCEE---EE----------E
T ss_pred CcCCcCcHHHHHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHH---HhCCCeE---EE----------E
Confidence 999999999997552 24667888887764333222 11222222 2332111 11 1
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028847 159 KGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 194 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 194 (203)
. ..++++|.++++++++++..
T Consensus 130 E---------------L~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 130 E---------------LMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp E---------------TTCCHHHHHHHHHHHHHHHH
T ss_pred e---------------CCCCHHHHHHHHHHHHHHHh
Confidence 1 57899999999999988764
No 66
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=97.61 E-value=0.00016 Score=48.77 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=58.1
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|||||++|-..++| +|...|+.+.+..++. |+++++---...... ..++.+++.+||.||+++
T Consensus 1 m~mkivaVtaCptGiAhTymAAeaLekaA~~~-G~~ikVEtqgs~g~~--------------n~Lt~~~I~~AD~VIia~ 65 (106)
T 2m1z_A 1 MKRKIIAVTACATGVAHTYMAAQALKKGAKKM-GNLIKVETQGATGIE--------------NELTEKDVNIGEVVIFAV 65 (106)
T ss_dssp CCCEEEEEEECSSCHHHHHHHHHHHHHHHHHH-TCEEEEEEEETTEES--------------SCCCHHHHHHCSEEEEEE
T ss_pred CCccEEEEEECCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEecCcccc--------------CCCCHHHHhhCCEEEEec
Confidence 66799999888888 5776788888888774 888776544332211 112467899999999998
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.+-- +.. ..|.||++.-+.+..
T Consensus 66 d~~v-----------~~~------~RF~gk~v~~~~v~~ 87 (106)
T 2m1z_A 66 DTKV-----------RNK------ERFDGKVVLEVPVSA 87 (106)
T ss_dssp SSCC-----------STH------HHHTTSEEEEECTTH
T ss_pred cccc-----------cch------hccCCCcEEEEcHHH
Confidence 8633 111 145799988766554
No 67
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=97.59 E-value=0.00016 Score=49.11 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|||||+.|-..++| +|...++.+.+..++ .|+++++---....+.. .++.+++.+||.|||++
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~-~G~~ikVEtqGs~G~~n--------------~Lt~~~I~~Ad~VIiA~ 68 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVE-AGYEVKIETQGADGIQN--------------RLTAQDIAEATIIIHSV 68 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TSSEEEEEEEETTEEES--------------CCCHHHHHHCSEEEEEE
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCcCC--------------CCCHHHHHhCCEEEEEe
Confidence 77899999999998 588778888888877 48888764333222111 12467999999999998
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
-+- ++.. ..|.||++.-..+...
T Consensus 69 d~~-----------v~~~------~RF~GK~v~~~~v~~a 91 (111)
T 2kyr_A 69 AVT-----------PEDN------ERFESRDVYEITLQDA 91 (111)
T ss_dssp SSC-----------CTTG------GGGTTSCEEEEETTHH
T ss_pred CCC-----------cCch------hhcCCCeEEEeCHHHH
Confidence 763 1111 2578999998766543
No 68
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=96.79 E-value=0.0037 Score=42.63 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=42.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEE--EEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKL--WQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|+||+++++|.-|.+..++..+.+.+.+. |+++++ .++.+. ...+.++|.||.+.|
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~-gi~~~V~~~~~~~~---------------------~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSH-NIPVELIQCRVNEI---------------------ETYMDGVHLICTTAR 78 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHT-TCCEEEEEECTTTT---------------------TTSTTSCSEEEESSC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEecHHHH---------------------hhccCCCCEEEECCc
Confidence 46899999999999999999999999884 776543 333321 123567898877777
Q ss_pred cC
Q 028847 80 TR 81 (203)
Q Consensus 80 ~y 81 (203)
+-
T Consensus 79 l~ 80 (113)
T 1tvm_A 79 VD 80 (113)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 69
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=96.73 E-value=0.0045 Score=41.70 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=40.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||++++++.-+.+ .+++.+.+.+++. |+++++....-.. ..+.+.++|.|+++ |.
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~-gi~~~i~a~~~~~-------------------~~~~~~~~Dvil~~-pq 59 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKY-EVPVIIEAFPETL-------------------AGEKGQNADVVLLG-PQ 59 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHS-CCSEEEEEECSSS-------------------TTHHHHHCSEEEEC-TT
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHC-CCCeEEEEecHHH-------------------HHhhccCCCEEEEc-cc
Confidence 568999999976666 7999999999884 8877655443221 13457789966655 54
No 70
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.92 E-value=0.021 Score=38.37 Aligned_cols=82 Identities=24% Similarity=0.277 Sum_probs=56.7
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||+.|-..++| +|...++.+.+..++. |+++++--=....... .+..+++.+||.|||++-+
T Consensus 3 ~kivaVTaCptGiAhTymAaeaL~~aA~~~-G~~ikVEtqGs~G~~n--------------~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 3 AKLLAITSCPNGIAHTYMAAENLQKAADRL-GVSIKVETQGGIGVEN--------------KLTEEEIREADAIIIAADR 67 (106)
T ss_dssp CEEEEEEECSSCSHHHHHHHHHHHHHHHHH-TCEEEEEEEETTEEES--------------CCCHHHHHHCSEEEEEESS
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCCccC--------------CCCHHHHHhCCEEEEEeCC
Confidence 389999999998 6888888888888774 8887663322221110 1246799999999999875
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
- +| . ..|.||++.-..+..
T Consensus 68 ~-----------v~-~------~RF~GK~v~~~~v~~ 86 (106)
T 2r48_A 68 S-----------VN-K------DRFIGKKLLSVGVQD 86 (106)
T ss_dssp C-----------CC-C------GGGTTSBEEEECHHH
T ss_pred c-----------cC-H------hHcCCCeEEEeCHHH
Confidence 3 12 1 257899998776543
No 71
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=95.89 E-value=0.0098 Score=40.25 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=39.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCce-EEE--EEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVE-AKL--WQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~-v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|+||+++++|.-|.+..++..+.+.+.+. |++ +++ .++.+. ...+.++|.||.+.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~-gi~~~~i~~~~~~~~---------------------~~~~~~~DlIi~t~ 75 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQL-GVSDIESASCSVGEA---------------------KGLASNYDIVVASN 75 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEECHHHH---------------------HHHGGGCSEEEEET
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHc-CCCeEEEEEeeHHHH---------------------hhccCCCcEEEECC
Confidence 56899999998888888887999999874 765 443 333221 12356899777776
Q ss_pred cc
Q 028847 79 PT 80 (203)
Q Consensus 79 P~ 80 (203)
|+
T Consensus 76 ~l 77 (110)
T 3czc_A 76 HL 77 (110)
T ss_dssp TT
T ss_pred ch
Confidence 65
No 72
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.74 E-value=0.018 Score=38.68 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=56.8
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||+.|-..++| +|...++.+.+..++. |+++++--=....... .+..+++.+||.|||++-+
T Consensus 3 ~kivaVTaCptGiAhTymAaeaL~~aA~~~-G~~ikVEtqGs~G~~n--------------~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 3 AKILAVTACPTGIAHTFMAADALKEKAKEL-GVEIKVETNGSSGIKH--------------KLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp CCEEEEEECSCC--CHHHHHHHHHHHHHHH-TCCEEEEEEETTEEES--------------CCCHHHHHHCSCEEEEESS
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCCccC--------------CCCHHHHHhCCEEEEEeCC
Confidence 389999999988 5888888888888774 8887653322221110 1246799999999999875
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
- +| . ..|.||++.-..+..
T Consensus 68 ~-----------v~-~------~RF~GK~v~~~~v~~ 86 (106)
T 2r4q_A 68 Q-----------VE-M------ERFKGKRVLQVPVTA 86 (106)
T ss_dssp C-----------CC-C------GGGTTSBEEEECHHH
T ss_pred c-----------cC-H------hHcCCCeEEEeCHHH
Confidence 3 11 1 257899998776543
No 73
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=95.56 E-value=0.044 Score=36.90 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=50.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||++++++. ..|..+++.+.+.+++. |+++++....... ..+.+.++|.|++|--+
T Consensus 7 mkIlL~C~aG-mSTsllv~km~~~a~~~-gi~v~i~a~~~~~-------------------~~~~~~~~DvvLLgPQV-- 63 (108)
T 3nbm_A 7 LKVLVLCAGS-GTSAQLANAINEGANLT-EVRVIANSGAYGA-------------------HYDIMGVYDLIILAPQV-- 63 (108)
T ss_dssp EEEEEEESSS-SHHHHHHHHHHHHHHHH-TCSEEEEEEETTS-------------------CTTTGGGCSEEEECGGG--
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHHC-CCceEEEEcchHH-------------------HHhhccCCCEEEEChHH--
Confidence 4899888664 67777999999999884 8888885532211 12356789998876332
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
+..++.+... ..-.|+|+.++-.
T Consensus 64 -------~y~~~~ik~~---~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 64 -------RSYYREMKVD---AERLGIQIVATRG 86 (108)
T ss_dssp -------GGGHHHHHHH---HTTTTCEEEECCH
T ss_pred -------HHHHHHHHHH---hhhcCCcEEEeCH
Confidence 2223333210 0234889988764
No 74
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=95.37 E-value=0.024 Score=38.24 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=38.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+++++|.-|++ .+++.+.+.+.+. |+++++....-... ...+.++|.|+.+.++
T Consensus 6 kIlvvC~~G~~TS-ll~~kl~~~~~~~-gi~~~i~~~~~~~~-------------------~~~~~~~D~Ii~t~~l 61 (109)
T 2l2q_A 6 NILLVCGAGMSTS-MLVQRIEKYAKSK-NINATIEAIAETRL-------------------SEVVDRFDVVLLAPQS 61 (109)
T ss_dssp EEEEESSSSCSSC-HHHHHHHHHHHHH-TCSEEEEEECSTTH-------------------HHHTTTCSEEEECSCC
T ss_pred EEEEECCChHhHH-HHHHHHHHHHHHC-CCCeEEEEecHHHH-------------------HhhcCCCCEEEECCcc
Confidence 7999999988888 8999999999884 77655433322111 2245789977666654
No 75
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=94.75 E-value=0.11 Score=40.63 Aligned_cols=73 Identities=16% Similarity=-0.019 Sum_probs=44.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|+|||-+|... .-+..+.+.+++ .|.+|++++..+.. ...++|.+||.||+.-...
T Consensus 4 m~~vLiV~g~~~~---~~a~~l~~aL~~-~g~~V~~i~~~~~~------------------~~~~~L~~yDvIIl~d~~~ 61 (259)
T 3rht_A 4 MTRVLYCGDTSLE---TAAGYLAGLMTS-WQWEFDYIPSHVGL------------------DVGELLAKQDLVILSDYPA 61 (259)
T ss_dssp --CEEEEESSCTT---TTHHHHHHHHHH-TTCCCEEECTTSCB------------------CSSHHHHTCSEEEEESCCG
T ss_pred CceEEEECCCCch---hHHHHHHHHHHh-CCceEEEecccccc------------------cChhHHhcCCEEEEcCCcc
Confidence 5899999766432 123445555555 48899988766531 1246899999999984222
Q ss_pred CCCcHHHHHHHHHHh
Q 028847 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~lk~fld~~ 96 (203)
+.-.+.+++.+-+.+
T Consensus 62 ~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 62 ERMTAQAIDQLVTMV 76 (259)
T ss_dssp GGBCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 222355666666665
No 76
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=94.38 E-value=0.087 Score=40.73 Aligned_cols=107 Identities=11% Similarity=-0.022 Sum_probs=57.2
Q ss_pred CceEEEEEecC----------cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHh--hh--cC----CCCCC---CC
Q 028847 2 ATKVYIVYYSM----------YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVL--GK--MG----AGPKS---DV 60 (203)
Q Consensus 2 m~kilIiy~S~----------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~--~~--~~----~~~~~---~~ 60 (203)
|+|||||..|. +|....=+-...+.+++ .|++|++.......+-+.. .. .. ....+ ..
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEK-HGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAF 81 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHT-TTCEEEEEESSSCCCBCTTC--------------------C
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHH-CCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHH
Confidence 57999998763 35543334445577777 4999999887542210000 00 00 00000 00
Q ss_pred -----CCCChh--hhhccCeEEEecc---cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 61 -----PTITPN--ELAEADGILLGFP---TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 61 -----~~~~~~--~l~~aD~iiigsP---~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+....+ +..++|+|||..- .|...-.+.+..|+.+.. -.||+++.++++
T Consensus 82 ~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~-------~~gk~iaaIC~G 140 (244)
T 3kkl_A 82 NKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIY-------ANGGVIAAICHG 140 (244)
T ss_dssp HHHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HHHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 001122 3467999998542 243445567788887763 257777777664
No 77
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=93.94 E-value=0.064 Score=37.08 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=28.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCc-eEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGV-EAKL 37 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~-~v~~ 37 (203)
|+||++++++.-|.+..++..+.+.+.+. |+ ++++
T Consensus 13 ~kkIlvVC~sGmgTS~ml~~klkk~~~e~-gi~~~~V 48 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSAMGAGVLRKKIQDA-GLSQISV 48 (125)
T ss_dssp CCEEEECCSSSSHHHHHHHHHHHHHHHHT-TCTTSEE
T ss_pred ccEEEEECCCcHHHHHHHHHHHHHHHHHC-CCceEEE
Confidence 46899999999998888899999999874 76 5444
No 78
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=92.44 E-value=0.22 Score=37.48 Aligned_cols=108 Identities=11% Similarity=-0.057 Sum_probs=56.2
Q ss_pred CCceEEEEEecC--------cchHHHHHHHHHHHhhccCCceEEEEEcCCCCch--h-Hhh--hcCC--CCCCCCCCCCh
Q 028847 1 MATKVYIVYYSM--------YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSE--D-VLG--KMGA--GPKSDVPTITP 65 (203)
Q Consensus 1 mm~kilIiy~S~--------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~--~-~~~--~~~~--~~~~~~~~~~~ 65 (203)
||+||+|+..|. .|....=+-...+.++. .|++++++........ . .+. .... ....-.+....
T Consensus 4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQE-KGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHH-TTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHH-CCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCCh
Confidence 667999988753 44433333345566666 3889998876542211 0 000 0000 00000000111
Q ss_pred hh--hhccCeEEEecc---cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NE--LAEADGILLGFP---TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~--l~~aD~iiigsP---~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
++ ..++|+|||..- .|...-.+.+..|+.+.. -++|+++.++++
T Consensus 83 ~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaiC~G 131 (224)
T 1u9c_A 83 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFA-------EDGRIIAAVCHG 131 (224)
T ss_dssp CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHH-------HCCCEEEEEChH
Confidence 23 357999998643 233334567778887763 257888877764
No 79
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=92.41 E-value=0.15 Score=38.16 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
|.+||+||-+- .||+..+++++.+ -|+++++++ + .+++.++|+|||
T Consensus 1 M~~~I~iiD~g-~~n~~si~~al~~-----~G~~~~v~~--~----------------------~~~l~~~D~lil 46 (211)
T 4gud_A 1 MTQNVVIIDTG-CANISSVKFAIER-----LGYAVTISR--D----------------------PQVVLAADKLFL 46 (211)
T ss_dssp --CCEEEECCC-CTTHHHHHHHHHH-----TTCCEEEEC--C----------------------HHHHHHCSEEEE
T ss_pred CCCEEEEEECC-CChHHHHHHHHHH-----CCCEEEEEC--C----------------------HHHHhCCCEEEE
Confidence 66789998532 3688888877643 277887642 1 357889999999
No 80
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=92.24 E-value=0.13 Score=38.18 Aligned_cols=135 Identities=12% Similarity=-0.059 Sum_probs=61.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCC--CCCC--hhhhhccCeEEEe
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDV--PTIT--PNELAEADGILLG 77 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~--~~~l~~aD~iiig 77 (203)
|+||+|+.+- |....=+-...+.++++ |++++++.+.......+....+..-..+. .+.. .....+||+|||-
T Consensus 4 M~kV~ill~d--Gfe~~E~~~p~~vl~~a-g~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvP 80 (194)
T 4gdh_A 4 MVKVCLFVAD--GTDEIEFSAPWGIFKRA-EIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIP 80 (194)
T ss_dssp -CCEEEEEET--TCCHHHHHHHHHHHHHT-TCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEEC
T ss_pred CCEEEEEECC--CcCHHHHHHHHHHHHHC-CCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEEC
Confidence 4699988763 43222223344566663 88888877654321111100000000000 0010 1235689999994
Q ss_pred c--c-cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC------CCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 78 F--P-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG------SQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 78 s--P-~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g------~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
. | .+...-.+.+..|+.+.. .-.+|.++.++++- .-.+..-++-..+.+.|...|..++...
T Consensus 81 GG~~~~~~l~~~~~l~~~l~~~~------~~~~k~iaaiC~g~~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~ 151 (194)
T 4gdh_A 81 GGGLGAKTLSTTPFVQQVVKEFY------KKPNKWIGMICAGTLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQP 151 (194)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHT------TCTTCEEEEEGGGGHHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSS
T ss_pred CCchhHhHhhhCHHHHHHHHHhh------hcCCceEEeecccccchhhceecCCceEecCcHHHHHHhcCCeeecce
Confidence 2 2 222223455667776652 22467777766431 1111111111123456666677766543
No 81
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=91.94 E-value=0.3 Score=37.62 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=24.5
Q ss_pred CCceEEEEEec---CcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYS---MYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S---~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+||+|+..| ..|....=+-...+.++++ |++++++....
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~a-G~~V~~~S~~~ 65 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRH-NVNFKCFAPNK 65 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHT-TCEEEEEECSS
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHC-CCEEEEEecCC
Confidence 55789988764 2354333233445667664 88999887654
No 82
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=91.77 E-value=2.1 Score=33.67 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=52.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCC-ceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEG-VEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|||||.+...-.-......|++.+++. | .+|++.+-.... + +.... .+.|.++|+||+.+. .
T Consensus 6 kvLiv~G~~~H~~~~~~~~l~~~l~~~-g~f~V~~~~d~~~~------------~-d~~~f-~~~L~~~D~vV~~~~--~ 68 (281)
T 4e5v_A 6 KTLLITGQNNHNWQVSHVVLKQILENS-GRFDVDFVISPEQG------------K-DMSGF-VLDFSPYQLVVLDYN--G 68 (281)
T ss_dssp EEEEEESCCSSCHHHHHHHHHHHHHHT-TSEEEEEEECCCTT------------S-CCTTC-CCCCTTCSEEEECCC--S
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHhc-CCEEEEEEeCCccc------------c-chhHH-hhhhhcCCEEEEeCC--C
Confidence 789987665323667777888888774 5 888877543210 0 00011 236899999997542 2
Q ss_pred CC-cHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 83 GM-MAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 83 ~~-~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.. .+.+.++|.+.+. .|+.++.+=+
T Consensus 69 ~~l~~~~~~~l~~yV~--------~Ggglv~~H~ 94 (281)
T 4e5v_A 69 DSWPEETNRRFLEYVQ--------NGGGVVIYHA 94 (281)
T ss_dssp SCCCHHHHHHHHHHHH--------TTCEEEEEGG
T ss_pred CcCCHHHHHHHHHHHH--------cCCCEEEEec
Confidence 22 3667777777763 4765554433
No 83
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=91.68 E-value=0.3 Score=36.15 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
||+||+||- ...+|...+.+.+. + .|+++.+++.. +++.++|+|||.-|
T Consensus 1 M~~~I~iid-~~~~~~~~~~~~l~----~-~G~~~~~~~~~------------------------~~l~~~d~lil~G~ 49 (200)
T 1ka9_H 1 MRMKALLID-YGSGNLRSAAKALE----A-AGFSVAVAQDP------------------------KAHEEADLLVLPGQ 49 (200)
T ss_dssp --CEEEEEC-SSCSCHHHHHHHHH----H-TTCEEEEESST------------------------TSCSSCSEEEECCC
T ss_pred CccEEEEEe-CCCccHHHHHHHHH----H-CCCeEEEecCh------------------------HHcccCCEEEECCC
Confidence 667899884 34467766655554 3 37777776411 13557999999664
No 84
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=90.14 E-value=0.14 Score=38.39 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=53.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh--hccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~iiigs 78 (203)
||+||+|+.+. |....=+-...+.++.. |.+++++......+ +....+..-. +....+++ .++|.|||..
T Consensus 8 m~~~v~ill~~--g~~~~e~~~~~~~l~~a-g~~v~~vs~~g~~~--v~~~~G~~v~---~d~~l~~~~~~~~D~livpG 79 (208)
T 3ot1_A 8 MSKRILVPVAH--GSEEMETVIIVDTLVRA-GFQVTMAAVGDKLQ--VQGSRGVWLT---AEQTLEACSAEAFDALALPG 79 (208)
T ss_dssp -CCEEEEEECT--TCCHHHHHHHHHHHHHT-TCEEEEEESSSCSE--EECTTSCEEE---CSEEGGGCCGGGCSEEEECC
T ss_pred cCCeEEEEECC--CCcHHHHHHHHHHHHHC-CCEEEEEEcCCCcc--eecCCCcEEe---CCCCHHHCCCcCCCEEEECC
Confidence 56789888764 33222233445666663 88999888753111 1000000000 11112333 5899999943
Q ss_pred c---cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 79 P---TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 79 P---~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
- .+...-.+.+..|+.+.. -+||+++.++++.
T Consensus 80 G~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G~ 114 (208)
T 3ot1_A 80 GVGGAQAFADSTALLALIDAFS-------QQGKLVAAICATP 114 (208)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETTHH
T ss_pred CchHHHHHhhCHHHHHHHHHHH-------HcCCEEEEEChhH
Confidence 2 222223456777777663 3688888877664
No 85
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=88.66 E-value=0.9 Score=33.95 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=52.0
Q ss_pred CceEEEEEecCcc--hHHHHHHHHH--HHhh--ccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh--ccCe
Q 028847 2 ATKVYIVYYSMYG--HVEKLAEEIQ--KGAA--SVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA--EADG 73 (203)
Q Consensus 2 m~kilIiy~S~~G--~T~~la~~i~--~~l~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ 73 (203)
|+||+|+.+.... ......+.+. ..+. + .+++++++........ ...+.. -.+....+++. ++|.
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~-~~~~v~~vs~~~~~v~---~~~G~~---i~~d~~~~~~~~~~~D~ 77 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDL-APLKVITVGANKEMIT---TMGGLR---IKPDISLDECTLESKDL 77 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTC-CCCCEEEEESSSCCEE---CTTCCE---ECCSEEGGGCCCCTTCE
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCC-CCeEEEEEECCCCeEE---cCCCCE---EecCcCHHHCCccCCCE
Confidence 6789888765421 1122223222 1111 3 3778888876542211 000000 00111133444 8999
Q ss_pred EEEe-cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 74 ILLG-FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 74 iiig-sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
||+. .+.+...-.+.+..|+.+.. -.||+++.++++
T Consensus 78 livpGG~~~~~~~~~~l~~~l~~~~-------~~gk~iaaiC~G 114 (212)
T 3efe_A 78 LILPGGTTWSEEIHQPILERIGQAL-------KIGTIVAAICGA 114 (212)
T ss_dssp EEECCCSCTTSGGGHHHHHHHHHHH-------HHTCEEEEETHH
T ss_pred EEECCCCccccccCHHHHHHHHHHH-------HCCCEEEEEcHH
Confidence 9983 34444455677888887763 257888877764
No 86
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=88.63 E-value=0.23 Score=36.99 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=52.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh--hccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~iiigs 78 (203)
||+||+|+.+......+ +-...+.++.. |++++++........++....+.. -.+....+++ .++|.||+..
T Consensus 1 M~~kV~ill~~g~~~~e--~~~~~~~l~~a-g~~v~~vs~~~~~~~~v~~~~g~~---v~~~~~l~~~~~~~~D~livpG 74 (205)
T 2ab0_A 1 MSASALVCLAPGSEETE--AVTTIDLLVRG-GIKVTTASVASDGNLAITCSRGVK---LLADAPLVEVADGEYDVIVLPG 74 (205)
T ss_dssp -CCEEEEEECTTCCHHH--HHHHHHHHHHT-TCEEEEEECSSTTCCEEECTTSCE---EECSEEHHHHTTSCCSEEEECC
T ss_pred CCcEEEEEEcCCCcHHH--HHHHHHHHHHC-CCEEEEEeCCCCCCceeecCCCeE---EecCCCHHHCCcccCCEEEECC
Confidence 77799988875432222 22344666663 888888876542100000000000 0011123344 6799999865
Q ss_pred cc---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 79 PT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 79 P~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.. +...-.+.+..|+.+.. -+||+++.++++.
T Consensus 75 G~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G~ 109 (205)
T 2ab0_A 75 GIKGAECFRDSTLLVETVKQFH-------RSGRIVAAICAAP 109 (205)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETHHH
T ss_pred CcccHHHhccCHHHHHHHHHHH-------HcCCEEEEECHhH
Confidence 32 21122355666776653 3688888777654
No 87
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=88.57 E-value=0.29 Score=35.92 Aligned_cols=100 Identities=9% Similarity=0.015 Sum_probs=51.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC-CCchhHhhhcCCCCCCCCCCCChhhh--hccCeEEEe
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE-TLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLG 77 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~iiig 77 (203)
|++||+|+.+- |....=+....+.++. .|.+++++.... .... ...+..-. +....+++ .++|.||+.
T Consensus 4 m~kkv~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~v~---~~~g~~i~---~d~~l~~~~~~~~D~livp 74 (190)
T 4e08_A 4 MSKSALVILAP--GAEEMEFIIAADVLRR-AGIKVTVAGLNGGEAVK---CSRDVQIL---PDTSLAQVASDKFDVVVLP 74 (190)
T ss_dssp CCCEEEEEECT--TCCHHHHHHHHHHHHH-TTCEEEEEESSSSSCEE---CTTSCEEE---CSEETGGGTTCCCSEEEEC
T ss_pred CCcEEEEEECC--CchHHHHHHHHHHHHH-CCCEEEEEECCCCccee---cCCCcEEE---CCCCHHHCCcccCCEEEEC
Confidence 77789988763 3322223344566666 388898887754 1111 00000000 11112333 368999985
Q ss_pred ccc---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 78 FPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 78 sP~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.-. +...-.+.+..|+.+.. -.+|+++.++++
T Consensus 75 GG~~~~~~~~~~~~~~~~l~~~~-------~~~k~i~aiC~G 109 (190)
T 4e08_A 75 GGLGGSNAMGESSLVGDLLRSQE-------SGGGLIAAICAA 109 (190)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETTT
T ss_pred CCChHHHHhhhCHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 421 11122345667776653 257877776654
No 88
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=88.54 E-value=1.6 Score=33.74 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=37.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe-cc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG-FP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig-sP 79 (203)
+|+|+||-.....+...+.+.+. + .|++++++++...+. ..+++.++|+|||. .|
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~----~-~G~~v~v~~~~~~~~------------------~p~~~~~~d~lIl~GGp 58 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLA----G-EHIPFQVLRMDRSDP------------------LPAEIRDCSGLAMMGGP 58 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHH----H-TTCCEEEEEGGGTCC------------------CCSCGGGSSEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHH----H-CCCeEEEEeccCCCc------------------CcCccccCCEEEECCCC
Confidence 35799998887777777776654 3 378899988764210 12357789988885 45
No 89
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=87.25 E-value=1.2 Score=34.36 Aligned_cols=107 Identities=11% Similarity=-0.033 Sum_probs=55.4
Q ss_pred CceEEEEEecC----------cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhh-----------hcCCCCCCCC
Q 028847 2 ATKVYIVYYSM----------YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG-----------KMGAGPKSDV 60 (203)
Q Consensus 2 m~kilIiy~S~----------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~-----------~~~~~~~~~~ 60 (203)
|+|||||..|. +|.-..=+-...+.+++ .|++|++.......+-+... ..........
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA-AGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH-CCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence 47999998773 25422223334466766 49999999875432100000 0000000000
Q ss_pred -----C-CCChh--hhhccCeEEEecc---cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 61 -----P-TITPN--ELAEADGILLGFP---TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 61 -----~-~~~~~--~l~~aD~iiigsP---~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
. ....+ +..++|+|||..- .|.......+..|+.+.. -.||+++.++++
T Consensus 88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~-------~~gk~iaaIC~G 147 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIY-------KRGGVIGAVCHG 147 (247)
T ss_dssp HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 0 01122 3467999999543 233344567778887763 257777776654
No 90
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=87.21 E-value=0.54 Score=35.30 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=41.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEE-EEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKL-WQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||.||= .| .+...++..+.+ .|.++.+ ++......+.......... .....+.+.++|.||+++|
T Consensus 23 mmkI~IIG---~G---~mG~~la~~l~~-~g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDvVilavp- 90 (220)
T 4huj_A 23 MTTYAIIG---AG---AIGSALAERFTA-AQIPAIIANSRGPASLSSVTDRFGASV----KAVELKDALQADVVILAVP- 90 (220)
T ss_dssp SCCEEEEE---CH---HHHHHHHHHHHH-TTCCEEEECTTCGGGGHHHHHHHTTTE----EECCHHHHTTSSEEEEESC-
T ss_pred CCEEEEEC---CC---HHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHhCCCc----ccChHHHHhcCCEEEEeCC-
Confidence 45888764 23 244555555555 3777776 4433222222111111100 0012456889999999998
Q ss_pred CCCCcHHHHHHHHHHhc
Q 028847 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~ 97 (203)
+..+...+..+.
T Consensus 91 -----~~~~~~v~~~l~ 102 (220)
T 4huj_A 91 -----YDSIADIVTQVS 102 (220)
T ss_dssp -----GGGHHHHHTTCS
T ss_pred -----hHHHHHHHHHhh
Confidence 445666666653
No 91
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=86.93 E-value=2.2 Score=33.52 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=41.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+||.||=+.. .|...++..+.+ .|.+|.+++..... . ..+.+.++|.||++.|.
T Consensus 20 ~~~~I~iIGg~G-----~mG~~la~~l~~-~G~~V~~~~~~~~~--~----------------~~~~~~~aDvVilavp~ 75 (298)
T 2pv7_A 20 DIHKIVIVGGYG-----KLGGLFARYLRA-SGYPISILDREDWA--V----------------AESILANADVVIVSVPI 75 (298)
T ss_dssp TCCCEEEETTTS-----HHHHHHHHHHHT-TTCCEEEECTTCGG--G----------------HHHHHTTCSEEEECSCG
T ss_pred CCCEEEEEcCCC-----HHHHHHHHHHHh-CCCeEEEEECCccc--C----------------HHHHhcCCCEEEEeCCH
Confidence 455777662132 355556666666 37788887644310 0 12457899999999998
Q ss_pred CCCCcHHHHHHHHHHhc
Q 028847 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~ 97 (203)
.. +..+++.+.
T Consensus 76 ~~------~~~vl~~l~ 86 (298)
T 2pv7_A 76 NL------TLETIERLK 86 (298)
T ss_dssp GG------HHHHHHHHG
T ss_pred HH------HHHHHHHHH
Confidence 74 566666653
No 92
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=86.46 E-value=0.91 Score=33.35 Aligned_cols=101 Identities=10% Similarity=0.003 Sum_probs=51.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh---hccCeEEEe
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL---AEADGILLG 77 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~aD~iiig 77 (203)
||+||+|+.+- |....=+....+.++.. |++++++....-.+ +....+. .-.+....+++ .++|.||+.
T Consensus 2 m~~~v~ill~~--g~~~~e~~~~~~~l~~a-g~~v~~vs~~~~~~--v~~~~g~---~v~~d~~l~~~~~~~~~D~livp 73 (197)
T 2rk3_A 2 ASKRALVILAK--GAEEMETVIPVDVMRRA-GIKVTVAGLAGKDP--VQCSRDV---VICPDASLEDAKKEGPYDVVVLP 73 (197)
T ss_dssp CCCEEEEEECT--TCCHHHHHHHHHHHHHT-TCEEEEEETTCSSC--EECTTSC---EECCSEEHHHHHTTCCCSEEEEC
T ss_pred CCCEEEEEECC--CCcHHHHHHHHHHHHHC-CCEEEEEEcCCCCc--cccCCCC---EEeCCcCHHHcCCccCCCEEEEC
Confidence 34588888764 33222233345666663 78888887653211 0000000 00011123455 789999986
Q ss_pred ccc---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 78 FPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 78 sP~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
... +...-.+.+..|+.+.. -+||+++.++++
T Consensus 74 GG~~~~~~l~~~~~~~~~l~~~~-------~~gk~i~aiC~G 108 (197)
T 2rk3_A 74 GGNLGAQNLSESAAVKEILKEQE-------NRKGLIATICAG 108 (197)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETTT
T ss_pred CCchhHHHhhhCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 532 11112345666666653 257888777664
No 93
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=85.21 E-value=9.4 Score=29.78 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=57.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCC-CCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGP-KSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||.|| |. |+ |...++..+.+ .|.+|.++|......+.... .+... .++ ..+.+.++|.||+..|.
T Consensus 8 ~~I~iI-G~--G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~-~g~~~~~~~----~~e~~~~aDvvi~~vp~- 74 (303)
T 3g0o_A 8 FHVGIV-GL--GS---MGMGAARSCLR-AGLSTWGADLNPQACANLLA-EGACGAAAS----AREFAGVVDALVILVVN- 74 (303)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH-TTCSEEESS----STTTTTTCSEEEECCSS-
T ss_pred CeEEEE-CC--CH---HHHHHHHHHHH-CCCeEEEEECCHHHHHHHHH-cCCccccCC----HHHHHhcCCEEEEECCC-
Confidence 478776 43 32 33444444444 37888888765322222211 11110 011 12346789999999996
Q ss_pred CCCcHHHHHHHH---HHhcccccccCC-CCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 82 FGMMAAQFKAFL---DATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 82 ~~~~~~~lk~fl---d~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+ +.+.. .+ +|+.+ +.++.. . ..+...+.+.+...|..+++.++
T Consensus 75 ----~~~~~~v~~~~~~l~~-----~l~~g~iv--v~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 128 (303)
T 3g0o_A 75 ----AAQVRQVLFGEDGVAH-----LMKPGSAV--MVSSTI---S-SADAQEIAAALTALNLNMLDAPV 128 (303)
T ss_dssp ----HHHHHHHHC--CCCGG-----GSCTTCEE--EECSCC---C-HHHHHHHHHHHHTTTCEEEECCE
T ss_pred ----HHHHHHHHhChhhHHh-----hCCCCCEE--EecCCC---C-HHHHHHHHHHHHHcCCeEEeCCC
Confidence 33456655 33321 23 33322 222221 1 12244556677777888876543
No 94
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=85.20 E-value=1.5 Score=32.69 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=30.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
+||+++..- .+++..+++.+.+ .|+++.++.... ..+++.++|+|||.-
T Consensus 14 ~~i~~id~~-~~~~~~~~~~l~~-----~G~~~~vv~~~~---------------------~~~~l~~~DglIl~G 62 (212)
T 2a9v_A 14 LKIYVVDNG-GQWTHREWRVLRE-----LGVDTKIVPNDI---------------------DSSELDGLDGLVLSG 62 (212)
T ss_dssp CBEEEEEES-CCTTCHHHHHHHH-----TTCBCCEEETTS---------------------CGGGGTTCSEEEEEE
T ss_pred ceEEEEeCC-CccHHHHHHHHHH-----CCCEEEEEeCCC---------------------CHHHHhCCCEEEECC
Confidence 489888643 3456666666654 266777776543 123566799999853
No 95
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=85.11 E-value=4.1 Score=30.40 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=19.0
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
..+...|.||...+.. ...-..+++++.+.
T Consensus 84 ~~~~~~D~vv~~a~~~--~~~~~~~~~~~~~~ 113 (236)
T 3qvo_A 84 QAMQGQDIVYANLTGE--DLDIQANSVIAAMK 113 (236)
T ss_dssp HHHTTCSEEEEECCST--THHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCCC--chhHHHHHHHHHHH
Confidence 3466789999776542 23345677777763
No 96
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=85.01 E-value=1.5 Score=32.76 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=15.7
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHH
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~f 92 (203)
+.+.++|+|+++- |+....++.+
T Consensus 75 ~~l~~ad~I~l~G----G~~~~l~~~L 97 (206)
T 3l4e_A 75 TKLRKNDFIYVTG----GNTFFLLQEL 97 (206)
T ss_dssp HHHHHSSEEEECC----SCHHHHHHHH
T ss_pred HHHHhCCEEEECC----CCHHHHHHHH
Confidence 5789999999954 5555444443
No 97
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=84.75 E-value=4.5 Score=29.27 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||-+- .+++..+++.+.+ .|+++.++...
T Consensus 3 i~iid~~-~~~~~~~~~~l~~-----~G~~~~~~~~~ 33 (189)
T 1wl8_A 3 IVIMDNG-GQYVHRIWRTLRY-----LGVETKIIPNT 33 (189)
T ss_dssp EEEEECS-CTTHHHHHHHHHH-----TTCEEEEEETT
T ss_pred EEEEECC-CchHHHHHHHHHH-----CCCeEEEEECC
Confidence 7777533 4567777766654 27788887754
No 98
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=84.66 E-value=5.5 Score=30.49 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=56.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCC-CChhhhhccCeEEEec
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGF 78 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~aD~iiigs 78 (203)
||.||-|+---.-| |..+++.+.+......++++.++--...- ++..-... +. .++.+-.+-|.+|+.|
T Consensus 2 mvvKiGiiKlGNig-ts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~~--------~~~~~~~~~~~pDfvI~is 72 (283)
T 1qv9_A 2 TVAKAIFIKCGNLG-TSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAV--------EMALDIAEDFEPDFIVYGG 72 (283)
T ss_dssp CCEEEEEEECSCCH-HHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHH--------HHHHHHHHHHCCSEEEEEC
T ss_pred eeEEEEEEEecccc-hHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHH--------HHhhhhhhhcCCCEEEEEC
Confidence 44577776533223 66788888877766557777776654432 22111000 00 0011234789999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
| |...|++-+.= +.+ .-+|+|+.+++-.-
T Consensus 73 P--N~a~PGP~~AR-E~l-------~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 73 P--NPAAPGPSKAR-EML-------ADSEYPAVIIGDAP 101 (283)
T ss_dssp S--CTTSHHHHHHH-HHH-------HTSSSCEEEEEEGG
T ss_pred C--CCCCCCchHHH-HHH-------HhCCCCEEEEcCCc
Confidence 9 67888875532 222 23799998876543
No 99
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=84.60 E-value=1.5 Score=33.83 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=11.9
Q ss_pred hhhhhccCeEEEec
Q 028847 65 PNELAEADGILLGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+++.++|.||+.-
T Consensus 72 ~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 72 IDELNRYDVIVISD 85 (256)
T ss_dssp HHHHHTCSEEEEES
T ss_pred hhHHhcCCEEEEeC
Confidence 46899999999984
No 100
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=84.20 E-value=2.5 Score=37.47 Aligned_cols=94 Identities=16% Similarity=0.042 Sum_probs=62.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||+|+...+.|..+.-+..+.+.|+++ |++|+++-...-. ..+.. .....-.++|+|||-.-...
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~a-G~~V~vVs~~~g~------------~vD~t-~~~~~s~~fDAVvlPGG~~g 595 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSSV-GVDVVVVAERXAN------------NVDET-YSASDAVQFDAVVVADGAEG 595 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGGG-TCEEEEEESSCCT------------TCCEE-STTCCGGGCSEEEECTTCGG
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHHC-CCEEEEEeccCCc------------ccccc-hhcCCccccCeEEecCCCcc
Confidence 5888887656888888888999999995 9999998875311 00000 01124568999999765432
Q ss_pred -------------------CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 83 -------------------GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 83 -------------------~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
-...+.+..|+.... -.||+++.++.+.
T Consensus 596 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~-------~~gKpIaAIc~ap 642 (688)
T 2iuf_A 596 LFGADSFTVEPSAGSGASTLYPAGRPLNILLDAF-------RFGKTVGALGSGS 642 (688)
T ss_dssp GCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHH-------HHTCEEEEEGGGH
T ss_pred cccccccccccccccchhhcccChHHHHHHHHHH-------HcCCEEEEECchH
Confidence 224566777777653 2599999886553
No 101
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=84.20 E-value=1.2 Score=33.24 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=49.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh-hccCeEEEe-cc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-AEADGILLG-FP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~iiig-sP 79 (203)
|+||+|+.+-..-..+ +-...+.+++..+.+++++..... . ....+..-..+ ...+++ .++|.||+. .+
T Consensus 3 m~kV~ill~~g~~~~E--~~~~~~~l~~~~~~~v~~vs~~~~-V---~~~~G~~v~~d---~~l~~~~~~~D~livpGG~ 73 (206)
T 3f5d_A 3 LKKALFLILDQYADWE--GVYLASALNQREDWSVHTVSLDPI-V---SSIGGFKTSVD---YIIGLEPANFNLLVMIGGD 73 (206)
T ss_dssp CEEEEEECCSSBCTTT--SHHHHHHHHTSTTEEEEEEESSSE-E---EBTTSCEEECS---EETTSSCSCCSEEEECCBS
T ss_pred ccEEEEEEcCCCcHHH--HHHHHHHHhccCCeEEEEEECCCC-E---EecCCcEEecC---cChhhCCcCCCEEEEcCCC
Confidence 5678877654321111 112233443323778888876542 1 11000000000 011222 378999984 33
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-+.. -.+.+..|+.+.. -++|+++.++++
T Consensus 74 ~~~~-~~~~l~~~l~~~~-------~~gk~iaaiC~G 102 (206)
T 3f5d_A 74 SWSN-DNKKLLHFVKTAF-------QKNIPIAAICGA 102 (206)
T ss_dssp CCCC-CCHHHHHHHHHHH-------HTTCCEEEETHH
T ss_pred Chhh-cCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 3333 6677888888763 358888877764
No 102
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=84.15 E-value=1.8 Score=32.73 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=65.7
Q ss_pred CceEEEEEecC---cchHHHHHHHHHHHhhccCCceEEEEEcCCCCc---hhHhhhc-CCCC----CCC----CCCCChh
Q 028847 2 ATKVYIVYYSM---YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS---EDVLGKM-GAGP----KSD----VPTITPN 66 (203)
Q Consensus 2 m~kilIiy~S~---~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~---~~~~~~~-~~~~----~~~----~~~~~~~ 66 (203)
|+||+|+.+|. .|....=+-...+.++.+ |++++++....... ++..... .... ..+ .+....+
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~a-g~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~ 84 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRS-GAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA 84 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHT-TCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHC-CCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHH
Confidence 67899887752 343222222344666663 88999887653210 0000000 0000 000 0001123
Q ss_pred h--hhccCeEEEecccC----CCC---------cHHHHHHHHHHhcccccccCCCCCeEEEEEccCCC----CC-CchhH
Q 028847 67 E--LAEADGILLGFPTR----FGM---------MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ----GG-GQETT 126 (203)
Q Consensus 67 ~--l~~aD~iiigsP~y----~~~---------~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~----~~-~~~~~ 126 (203)
+ ..++|+|||..-.- ... ..+.+..|+.+.. -+||+++.++++... -. |.+.|
T Consensus 85 ~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~gk~vaaIC~G~~~La~aL~~Gr~~T 157 (232)
T 1vhq_A 85 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMH-------QAGKPLGFMCIAPAMLPKIFDFPLRLT 157 (232)
T ss_dssp GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHH-------HTTCCEEEETTGGGGHHHHCSSCCEEC
T ss_pred HcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHH-------HcCCEEEEECHHHHHHHHHhcCCCEEe
Confidence 3 46799999865310 111 2567778887763 258888888775421 11 22211
Q ss_pred H---HHHHHHHHHcCcEEec
Q 028847 127 P---LTAITQLVHHGMIFVP 143 (203)
Q Consensus 127 ~---~~~~~~l~~~g~~~v~ 143 (203)
. ..+.+.|...|..++.
T Consensus 158 th~~~~~~~~l~~~g~~~~~ 177 (232)
T 1vhq_A 158 IGTDIDTAEVLEEMGAEHVP 177 (232)
T ss_dssp CCSCHHHHHHHHHTTCEECC
T ss_pred ccCCHHHHHHHHHcCCEEec
Confidence 1 2345667666777654
No 103
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=83.59 E-value=1.8 Score=33.02 Aligned_cols=42 Identities=5% Similarity=-0.164 Sum_probs=27.4
Q ss_pred hhccCeEEEecc---cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 68 LAEADGILLGFP---TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 68 l~~aD~iiigsP---~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|+|||..- .|...-.+.+..|+.+.. -+||+++.++++
T Consensus 96 ~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~-------~~gk~vaaIC~G 140 (243)
T 1rw7_A 96 ADDYQIFFASAGHGTLFDYPKAKDLQDIASEIY-------ANGGVVAAVCHG 140 (243)
T ss_dssp GGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HhhCcEEEECCCCCchhhcccCHHHHHHHHHHH-------HcCCEEEEECCC
Confidence 457999988642 233334566777887763 257888877764
No 104
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=83.08 E-value=2.8 Score=32.16 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=43.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||||+|. |+ | .+...+.+.|.+. |.+|..+.-............-..-.-|... .+ +..+|.||...+.
T Consensus 4 m~~~ilVt-Ga--G---~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSF-GH--G---YTARVLSRALAPQ-GWRIIGTSRNPDQMEAIRASGAEPLLWPGEE--PS-LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEE-TC--C---HHHHHHHHHHGGG-TCEEEEEESCGGGHHHHHHTTEEEEESSSSC--CC-CTTCCEEEECCCC
T ss_pred CcCcEEEE-CC--c---HHHHHHHHHHHHC-CCEEEEEEcChhhhhhHhhCCCeEEEecccc--cc-cCCCCEEEECCCc
Confidence 66787765 54 3 3455555555553 7788777654322111111000000001111 12 6789999998876
Q ss_pred CCCCcHHHHHHHHHHhc
Q 028847 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~ 97 (203)
....- +..+++++.+.
T Consensus 74 ~~~~~-~~~~~l~~a~~ 89 (286)
T 3ius_A 74 DSGGD-PVLAALGDQIA 89 (286)
T ss_dssp BTTBC-HHHHHHHHHHH
T ss_pred ccccc-HHHHHHHHHHH
Confidence 54443 34677887764
No 105
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=82.71 E-value=6.2 Score=30.32 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=36.0
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCc-HHHHHHHHHHh
Q 028847 20 AEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMM-AAQFKAFLDAT 96 (203)
Q Consensus 20 a~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~-~~~lk~fld~~ 96 (203)
...|++.|++ .|.+|+...+.+... . ...+.|.++|+||+-.-.-.+.+ +.+.+.|.+.+
T Consensus 34 ~~~i~~~L~~-~gf~V~~~t~dd~~~--~--------------~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V 94 (252)
T 1t0b_A 34 HTVIASYLAE-AGFDAATAVLDEPEH--G--------------LTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRV 94 (252)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSSGGG--G--------------CCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCcEEEEEeccCccc--c--------------CCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHH
Confidence 4456777777 488998877544210 0 12457999999998421112223 45566666666
No 106
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=82.40 E-value=2.6 Score=32.72 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+||.||=.| | .+...++..+.+ .|.+|.+++......+.... .+... . ...+.+.++|.||++.|.
T Consensus 10 mmm~I~iIG~t--G---~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~-~g~~~-~----~~~~~~~~aDvVi~av~~ 77 (286)
T 3c24_A 10 GPKTVAILGAG--G---KMGARITRKIHD-SAHHLAAIEIAPEGRDRLQG-MGIPL-T----DGDGWIDEADVVVLALPD 77 (286)
T ss_dssp CCCEEEEETTT--S---HHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH-TTCCC-C----CSSGGGGTCSEEEECSCH
T ss_pred cCCEEEEECCC--C---HHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh-cCCCc-C----CHHHHhcCCCEEEEcCCc
Confidence 45688776331 3 244445555555 37778776654221111111 11100 0 113457799999999997
Q ss_pred CCCCcHHHHHHHHHHhc
Q 028847 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~ 97 (203)
.. ++.+++.+.
T Consensus 78 ~~------~~~v~~~l~ 88 (286)
T 3c24_A 78 NI------IEKVAEDIV 88 (286)
T ss_dssp HH------HHHHHHHHG
T ss_pred hH------HHHHHHHHH
Confidence 43 566666653
No 107
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=82.08 E-value=13 Score=29.15 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=60.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||.|| |. |+ |...++..+.+ .|.+|.++|......+.+.. .+... .....+.+.++|.||+..|.
T Consensus 21 m~~I~iI-G~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~-~g~~~----~~~~~~~~~~aDvvi~~vp~- 87 (310)
T 3doj_A 21 MMEVGFL-GL--GI---MGKAMSMNLLK-NGFKVTVWNRTLSKCDELVE-HGASV----CESPAEVIKKCKYTIAMLSD- 87 (310)
T ss_dssp SCEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHH-TTCEE----CSSHHHHHHHCSEEEECCSS-
T ss_pred CCEEEEE-Cc--cH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHH-CCCeE----cCCHHHHHHhCCEEEEEcCC-
Confidence 3588876 43 32 34444444444 37889888776533332221 01000 00113457789999999986
Q ss_pred CCCcHHHHHHHH---HHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 82 FGMMAAQFKAFL---DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 82 ~~~~~~~lk~fl---d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+ +.+.. ...+|+.+ +.++.. . ......+...+...|..+++.++
T Consensus 88 ----~~~~~~v~~~~~~l~~----~l~~g~~v--v~~st~---~-~~~~~~~~~~~~~~g~~~v~~pv 141 (310)
T 3doj_A 88 ----PCAALSVVFDKGGVLE----QICEGKGY--IDMSTV---D-AETSLKINEAITGKGGRFVEGPV 141 (310)
T ss_dssp ----HHHHHHHHHSTTCGGG----GCCTTCEE--EECSCC---C-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred ----HHHHHHHHhCchhhhh----ccCCCCEE--EECCCC---C-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 34566666 44321 12234332 222221 1 12244566677777888877554
No 108
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=81.91 E-value=3.4 Score=31.25 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=16.9
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHH
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFL 93 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fl 93 (203)
+.+.++|+|||.- |+....++.+-
T Consensus 75 ~~l~~ad~I~lpG----G~~~~~~~~l~ 98 (229)
T 1fy2_A 75 AAIEKAEIIIVGG----GNTFQLLKESR 98 (229)
T ss_dssp HHHHHCSEEEECC----SCHHHHHHHHH
T ss_pred HHHhcCCEEEECC----CcHHHHHHHHH
Confidence 6899999999975 55555544443
No 109
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=81.29 E-value=5.6 Score=31.75 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=28.2
Q ss_pred CceEEEEEecCcc--hHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+|++||+-...| ...++.+.+.+.+++. |++++++.-.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~-g~~~~~~~t~ 64 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKA-GYETSAYATE 64 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHT-TEEEEEEECC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHc-CCeEEEEEec
Confidence 5678888755444 5677888999999884 8888776543
No 110
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=80.73 E-value=13 Score=26.89 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=30.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh--ccCeEEE-eccc
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA--EADGILL-GFPT 80 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~iii-gsP~ 80 (203)
|+||-.- .+.+..+++.+.+ .|++++++...+.. .+++. ++|+||| +.|-
T Consensus 4 i~iid~~-~s~~~~~~~~l~~-----~G~~~~v~~~~~~~--------------------~~~~~~~~~dglil~gG~~ 56 (195)
T 1qdl_B 4 TLIIDNY-DSFVYNIAQIVGE-----LGSYPIVIRNDEIS--------------------IKGIERIDPDRLIISPGPG 56 (195)
T ss_dssp EEEEECS-CSSHHHHHHHHHH-----TTCEEEEEETTTSC--------------------HHHHHHHCCSEEEECCCSS
T ss_pred EEEEECC-CchHHHHHHHHHh-----CCCEEEEEeCCCCC--------------------HHHHhhCCCCEEEECCCCC
Confidence 8888622 3345555555543 27788888764321 22444 5999999 6654
No 111
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=80.60 E-value=1.4 Score=33.37 Aligned_cols=89 Identities=17% Similarity=0.036 Sum_probs=44.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+||.|+.+-. .+..=+-...+.++...+.+++++....... ....+..-. +....+++.++|.||+..-.
T Consensus 4 m~~~V~ill~~g--f~~~e~~~p~evl~~~~~~~v~~vs~~~~~V---~~~~G~~v~---~d~~l~~~~~~D~livpGG~ 75 (231)
T 3noq_A 4 MAVQIGFLLFPE--VQQLDLTGPHDVLASLPDVQVHLIWKEPGPV---VASSGLVLQ---ATTSFADCPPLDVICIPGGT 75 (231)
T ss_dssp CCEEEEEECCTT--CCHHHHHHHHHHHTTSTTEEEEEEESSSEEE---ECTTSCEEE---ECEETTTCCCCSEEEECCST
T ss_pred CcEEEEEEEeCC--CcHHHHHHHHHHHHcCCCCEEEEEECCCCcE---EcCCCCEEe---cccChhHCCcCCEEEECCCC
Confidence 677888876543 3222233345666553477888877643211 000000000 01112345679999985421
Q ss_pred -C-CCCcHHHHHHHHHHhc
Q 028847 81 -R-FGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 -y-~~~~~~~lk~fld~~~ 97 (203)
. ...-.+.+..||.+..
T Consensus 76 g~~~~~~~~~l~~~lr~~~ 94 (231)
T 3noq_A 76 GVGALMEDPQALAFIRQQA 94 (231)
T ss_dssp THHHHTTCHHHHHHHHHHH
T ss_pred ChhhhccCHHHHHHHHHHH
Confidence 1 1123456777777663
No 112
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=79.55 E-value=2.5 Score=31.14 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCceEEEEEecCcchH-HHHHHHHHHHhhccCCceEEEEE
Q 028847 1 MATKVYIVYYSMYGHV-EKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 1 mm~kilIiy~S~~G~T-~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
||+||+|+.+-. +++ .. +.+.+++. |+++.++.
T Consensus 1 m~~~i~il~~~~-~~~~~~----~~~~l~~~-g~~~~~~~ 34 (213)
T 3d54_D 1 MKPRACVVVYPG-SNCDRD----AYHALEIN-GFEPSYVG 34 (213)
T ss_dssp CCCEEEEECCTT-EEEHHH----HHHHHHTT-TCEEEEEC
T ss_pred CCcEEEEEEcCC-CCccHH----HHHHHHHC-CCEEEEEe
Confidence 788999886543 332 22 34555553 77777764
No 113
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=79.51 E-value=3.8 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=22.5
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+++. +|+++ .+.++++...+.+ .+++++.+|+.+
T Consensus 4 ~m~~v~-ly~~~~C~~C~~~~~~L~~-----~~i~~~~~di~~ 40 (92)
T 2khp_A 4 SMVDVI-IYTRPGCPYCARAKALLAR-----KGAEFNEIDASA 40 (92)
T ss_dssp CCCCEE-EEECTTCHHHHHHHHHHHH-----TTCCCEEEESTT
T ss_pred CcccEE-EEECCCChhHHHHHHHHHH-----cCCCcEEEECCC
Confidence 565555 45554 5778776555543 267888888764
No 114
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=79.01 E-value=6.5 Score=30.85 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=28.7
Q ss_pred CCceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++||+|+++..+. -+-.=++.+.+.+++ .|+++..++..+
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~~~~ 55 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFDPAE 55 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTT
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 45689999986543 233346777788877 489999988543
No 115
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=78.89 E-value=7.3 Score=28.51 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=25.6
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
..+...|.||......+ +. .+++++.+. ....+++..+++.+.
T Consensus 69 ~~~~~~d~vv~~ag~~n--~~--~~~~~~~~~------~~~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 69 QAVTNAEVVFVGAMESG--SD--MASIVKALS------RXNIRRVIGVSMAGL 111 (221)
T ss_dssp HHHTTCSEEEESCCCCH--HH--HHHHHHHHH------HTTCCEEEEEEETTT
T ss_pred HHHcCCCEEEEcCCCCC--hh--HHHHHHHHH------hcCCCeEEEEeecee
Confidence 34568899998876432 22 777777763 122345555555443
No 116
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=78.66 E-value=2.8 Score=32.96 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=30.6
Q ss_pred CceEEEEEec---------------CcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYS---------------MYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S---------------~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||||+++..+ ..|-.+..+..+++.+.+. |.+|.++....
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~-G~~v~v~~~~~ 57 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL-GHEVFLLGAPG 57 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT-TCEEEEESCTT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3599999877 2366777888888888874 89999886654
No 117
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=78.65 E-value=6.6 Score=30.89 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=28.7
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|+++|+-.. .|...++.+.+.+.+++. |++++++....
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~-~~~~~~~~t~~ 49 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAA-FPDLHILHTKE 49 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHH-CSEEEEEECCS
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHc-CCeEEEEEccC
Confidence 56888877444 455677888898888884 88888775443
No 118
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=78.40 E-value=2.8 Score=30.61 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=48.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhh--hhccCeEEEe
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNE--LAEADGILLG 77 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~--l~~aD~iiig 77 (203)
||+||+|+.+......+ +....+.++. .|++++++...... .. ...+. ..-.+....++ ..++|+||+.
T Consensus 22 ~~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~~v~---~~~g~--~~v~~~~~l~~~~~~~~D~livp 93 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSE--FTSPADEFRK-AGHEVITIEKQAGKTVK---GKKGE--ASVTIDKSIDEVTPAEFDALLLP 93 (193)
T ss_dssp CCCEEEEECCTTBCTHH--HHHHHHHHHH-TTCEEEEEESSTTCEEE---CTTSS--CEEECCEEGGGCCGGGCSEEEEC
T ss_pred cCCEEEEEECCCCCHHH--HHHHHHHHHH-CCCEEEEEECCCCccee---cCCCC--eEEECCCChHHCCcccCCEEEEC
Confidence 35688888764322111 2234455555 37888888765422 10 00000 00001111222 3689999986
Q ss_pred cccCC---CCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 78 FPTRF---GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 78 sP~y~---~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.. +. ..-.+.+..|+.+.. -.||+++.++++
T Consensus 94 GG-~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aIC~G 127 (193)
T 1oi4_A 94 GG-HSPDYLRGDNRFVTFTRDFV-------NSGKPVFAICHG 127 (193)
T ss_dssp CB-THHHHHTTSHHHHHHHHHHH-------HTTCCEEEETTT
T ss_pred CC-cCHHHhhhCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 54 21 111245666666552 257777776654
No 119
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=78.31 E-value=3.2 Score=30.25 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.3
Q ss_pred hhhccCeEEEec
Q 028847 67 ELAEADGILLGF 78 (203)
Q Consensus 67 ~l~~aD~iiigs 78 (203)
++.++|+|||.-
T Consensus 35 ~l~~~d~iil~G 46 (196)
T 2nv0_A 35 QLNEVDGLILPG 46 (196)
T ss_dssp GGGGCSEEEECC
T ss_pred HHhhCCEEEECC
Confidence 467899999953
No 120
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=77.83 E-value=22 Score=27.52 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=60.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.|| |.. + +...++..+.+ .|.+|.++|......+...+. +.. .....+++.++|.||+..|.
T Consensus 16 ~~I~vI-G~G--~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~-----~~~~~~~~~~aDvvi~~vp~-- 80 (296)
T 3qha_A 16 LKLGYI-GLG--N---MGAPMATRMTE-WPGGVTVYDIRIEAMTPLAEA-GAT-----LADSVADVAAADLIHITVLD-- 80 (296)
T ss_dssp CCEEEE-CCS--T---THHHHHHHHTT-STTCEEEECSSTTTSHHHHHT-TCE-----ECSSHHHHTTSSEEEECCSS--
T ss_pred CeEEEE-CcC--H---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHC-CCE-----EcCCHHHHHhCCEEEEECCC--
Confidence 367776 332 1 33344444555 378899988766544333221 000 00123444449999999985
Q ss_pred CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 83 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 83 ~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..++.+.. .++...+. +.++.. . ..+...+.+.+...|..+++.++
T Consensus 81 ---~~~~~~v~~~l~~-----~l~~g~iv-v~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 131 (296)
T 3qha_A 81 ---DAQVREVVGELAG-----HAKPGTVI-AIHSTI---S-DTTAVELARDLKARDIHIVDAPV 131 (296)
T ss_dssp ---HHHHHHHHHHHHT-----TCCTTCEE-EECSCC---C-HHHHHHHHHHHGGGTCEEEECCE
T ss_pred ---hHHHHHHHHHHHH-----hcCCCCEE-EEeCCC---C-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 3456777766632 23222222 222221 1 12244566677777888876654
No 121
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=76.63 E-value=3.6 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=29.0
Q ss_pred CCceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 1 MATKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 1 mm~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|++||+|+++..+. .+...++.+.+.+++ .|+++..++..+.
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~~~~~~ 45 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKEV 45 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTS
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEEecCch
Confidence 66789999876532 222355677777777 4899999887743
No 122
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=76.62 E-value=2.1 Score=32.50 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=39.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCc----eEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGV----EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~----~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
||+||.|| | .|+ |...++..+.+ .|. ++.++|......+........... ....+.+.++|.||+
T Consensus 1 M~~~i~iI-G--~G~---mG~~~a~~l~~-~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~----~~~~e~~~~aDvVil 69 (247)
T 3gt0_A 1 MDKQIGFI-G--CGN---MGMAMIGGMIN-KNIVSSNQIICSDLNTANLKNASEKYGLTTT----TDNNEVAKNADILIL 69 (247)
T ss_dssp CCCCEEEE-C--CSH---HHHHHHHHHHH-TTSSCGGGEEEECSCHHHHHHHHHHHCCEEC----SCHHHHHHHCSEEEE
T ss_pred CCCeEEEE-C--ccH---HHHHHHHHHHh-CCCCCCCeEEEEeCCHHHHHHHHHHhCCEEe----CChHHHHHhCCEEEE
Confidence 66788876 3 332 44444444544 265 777776543222222111111100 001345778999999
Q ss_pred ecccCCCCcHHHHHHHHHHhc
Q 028847 77 GFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 77 gsP~y~~~~~~~lk~fld~~~ 97 (203)
++|.+ .++.+++.+.
T Consensus 70 av~~~------~~~~v~~~l~ 84 (247)
T 3gt0_A 70 SIKPD------LYASIINEIK 84 (247)
T ss_dssp CSCTT------THHHHC---C
T ss_pred EeCHH------HHHHHHHHHH
Confidence 99754 3555555553
No 123
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=76.28 E-value=5.2 Score=27.84 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHH
Q 028847 14 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL 93 (203)
Q Consensus 14 G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fl 93 (203)
-+++.+++.|.+.+.+..+.++.++|+... -.-+|.+||+|..=.-++.+...+..
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~------------------------s~~~DyfVIatg~S~rqv~Aiad~v~ 72 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGK------------------------SSIADYMVIASGRSSRQVTAMAQKLA 72 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTT------------------------CSSCSEEEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEcCCHHHHHHHHHHHH
Confidence 357789999999887765778999999863 23469999999775444444444444
Q ss_pred HHh
Q 028847 94 DAT 96 (203)
Q Consensus 94 d~~ 96 (203)
+.+
T Consensus 73 ~~l 75 (136)
T 3ups_A 73 DRI 75 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 124
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=75.69 E-value=6 Score=29.85 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=34.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||++|-+....+-..+.+.+.+ .|++++++++...+. ..+++.++|+|||.-
T Consensus 2 ~i~vi~h~~~e~~g~~~~~l~~-----~g~~~~~~~~~~~~~------------------~p~~~~~~d~lii~G 53 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLAWAAL-----RGHDVSMTKVYRYEK------------------LPKDIDDFDMLILMG 53 (236)
T ss_dssp EEEEEECCTTSCCHHHHHHHHH-----TTCEEEEEEGGGTCC------------------CCSCGGGCSEEEECC
T ss_pred eEEEEeCCCCCCchHHHHHHHH-----CCCeEEEEeeeCCCC------------------CCCCccccCEEEECC
Confidence 8999998875444445554433 388999998864210 122577899988873
No 125
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=75.42 E-value=3.4 Score=33.77 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=51.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHh-hhc------C--CC-CCCCCCCCChhh--hh
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVL-GKM------G--AG-PKSDVPTITPNE--LA 69 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~-~~~------~--~~-~~~~~~~~~~~~--l~ 69 (203)
|+||+|+.+ .|....=+....+.++++ |++++++........... ... . .. ...-.+....++ ..
T Consensus 12 ~~kv~ill~--dg~e~~E~~~~~~~l~~a-g~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 88 (396)
T 3uk7_A 12 SRTVLILCG--DYMEDYEVMVPFQALQAF-GITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLS 88 (396)
T ss_dssp CCEEEEECC--TTEEHHHHHHHHHHHHHT-TCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred CCeEEEEeC--CCccHHHHHHHHHHHHHC-CCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcc
Confidence 468888774 343333344455667763 889988876532111000 000 0 00 000001111233 46
Q ss_pred ccCeEEEeccc--CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 70 EADGILLGFPT--RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 70 ~aD~iiigsP~--y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
++|.||+..-. .+..-.+.+..|+.+.. -.+|+++.++++
T Consensus 89 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~-------~~~~~i~aiC~G 130 (396)
T 3uk7_A 89 KYDGLVIPGGRAPEYLALTASVVELVKEFS-------RSGKPIASICHG 130 (396)
T ss_dssp GCSEEEECCBSHHHHHTTCHHHHHHHHHHH-------HTTCCEEEETTT
T ss_pred cCCEEEECCCcchhhcccCHHHHHHHHHHH-------HcCCEEEEECch
Confidence 89999994421 11122356677776653 257777766653
No 126
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=75.37 E-value=8.1 Score=30.28 Aligned_cols=42 Identities=10% Similarity=-0.220 Sum_probs=26.8
Q ss_pred hhccCeEEEec---ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 68 LAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 68 l~~aD~iiigs---P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|+|||.. +.|...-.+.+..||.+.. -+||+++.++++
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~-------~~gk~VaaIC~G 187 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAI-------KNDRFVISLCHG 187 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHH-------HcCCEEEEECcc
Confidence 46799999865 3444444577888887763 246666666554
No 127
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=75.36 E-value=25 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=19.6
Q ss_pred hhhccCeEEEecccCCC---Cc-HHHHHHHHHHhc
Q 028847 67 ELAEADGILLGFPTRFG---MM-AAQFKAFLDATG 97 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~---~~-~~~lk~fld~~~ 97 (203)
.+.++|.||++.|+... .. -..+...++.+.
T Consensus 75 a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~ 109 (450)
T 3gg2_A 75 AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIG 109 (450)
T ss_dssp HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHH
T ss_pred HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHH
Confidence 47899999999998632 10 124555555553
No 128
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=75.21 E-value=5.1 Score=27.62 Aligned_cols=57 Identities=4% Similarity=0.014 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHH
Q 028847 16 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 16 T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~ 95 (203)
+..+++.+++.+.+..+-++.++|+... -.-+|.+||+|..=.-.+.+...+..+.
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~------------------------s~~~DyfVIaTg~S~rqv~Aiad~v~~~ 58 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKL------------------------TSLFQRMIVATGDSNRQVKALANSVQVK 58 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGT------------------------CSSCSEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC------------------------CcccCEEEEEEcCCHHHHHHHHHHHHHH
Confidence 5678888888887655678999999763 2357999999977655555544444444
Q ss_pred h
Q 028847 96 T 96 (203)
Q Consensus 96 ~ 96 (203)
+
T Consensus 59 l 59 (130)
T 2id1_A 59 L 59 (130)
T ss_dssp H
T ss_pred H
Confidence 4
No 129
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=75.16 E-value=24 Score=27.22 Aligned_cols=117 Identities=9% Similarity=0.140 Sum_probs=58.0
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||.|| |.. -| ..+|..++ + .|.+|.++|......+..... .... .....+.+.++|.||+..|.
T Consensus 3 m~~I~ii-G~G~mG--~~~a~~l~----~-~G~~V~~~d~~~~~~~~~~~~-g~~~----~~~~~~~~~~aDvvi~~vp~ 69 (302)
T 2h78_A 3 MKQIAFI-GLGHMG--APMATNLL----K-AGYLLNVFDLVQSAVDGLVAA-GASA----ARSARDAVQGADVVISMLPA 69 (302)
T ss_dssp CCEEEEE-CCSTTH--HHHHHHHH----H-TTCEEEEECSSHHHHHHHHHT-TCEE----CSSHHHHHTTCSEEEECCSC
T ss_pred CCEEEEE-eecHHH--HHHHHHHH----h-CCCeEEEEcCCHHHHHHHHHC-CCeE----cCCHHHHHhCCCeEEEECCC
Confidence 3588877 332 22 33444443 3 377888887653222211110 0000 00013456789999999986
Q ss_pred CCCCcHHHHHHHHH---HhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 81 RFGMMAAQFKAFLD---ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 81 y~~~~~~~lk~fld---~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+. .+.. .++...+. +.++... . .....+.+.+...|..++..++
T Consensus 70 -----~~~~~~v~~~~~~~~~-----~l~~~~~v-i~~st~~--~--~~~~~l~~~~~~~g~~~~~~pv 123 (302)
T 2h78_A 70 -----SQHVEGLYLDDDGLLA-----HIAPGTLV-LECSTIA--P--TSARKIHAAARERGLAMLDAPV 123 (302)
T ss_dssp -----HHHHHHHHHSSSCGGG-----SSCSSCEE-EECSCCC--H--HHHHHHHHHHHHTTCCEEECCE
T ss_pred -----HHHHHHHHcCchhHHh-----cCCCCcEE-EECCCCC--H--HHHHHHHHHHHHcCCEEEEEEc
Confidence 446777776 4421 23222222 3332221 1 1234566677777887776543
No 130
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=75.05 E-value=9.3 Score=27.03 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=44.4
Q ss_pred CceEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh
Q 028847 2 ATKVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL 68 (203)
Q Consensus 2 m~kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (203)
|+||+|++|-. +|+ -+.+.+.+.+...+ .|++++.+.-+.. ..+++. ..+..
T Consensus 7 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~~~~~QSN~E--geLId~------------Ih~a~ 71 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQG-MDVALSHLQSNAE--HALIDS------------IHQAR 71 (153)
T ss_dssp CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHH-TTEEEEEEECSCH--HHHHHH------------HHHHT
T ss_pred cCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHHHH------------HHHhh
Confidence 66999999985 343 34445556666655 4888887765432 111110 12234
Q ss_pred hccCeEEEecccCC-CCcHHHHHHHHHHh
Q 028847 69 AEADGILLGFPTRF-GMMAAQFKAFLDAT 96 (203)
Q Consensus 69 ~~aD~iiigsP~y~-~~~~~~lk~fld~~ 96 (203)
.++|+|||=---|- .++ .++..|..+
T Consensus 72 ~~~dgiiINpgA~THtSv--AlrDAl~~~ 98 (153)
T 3lwz_A 72 GNTDFILINPAAFTHTSV--ALRDALLGV 98 (153)
T ss_dssp TTCSEEEEECGGGGGTCH--HHHHHHHHH
T ss_pred hcCceEEEccccceechH--HHHHHHHhc
Confidence 56899999877763 333 344445444
No 131
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=74.82 E-value=5.9 Score=30.02 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=34.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
+|+||-.++.+|...+.+.+.. .|+++.++...+.+ ...+.+.++|+|||.-
T Consensus 14 ~~~~i~~~~~~~~~~i~~~l~~-----~G~~v~v~~~~~~~------------------~~~~~l~~~Dglil~G 65 (239)
T 1o1y_A 14 RVLAIRHVEIEDLGMMEDIFRE-----KNWSFDYLDTPKGE------------------KLERPLEEYSLVVLLG 65 (239)
T ss_dssp EEEEECSSTTSSCTHHHHHHHH-----TTCEEEEECGGGTC------------------CCSSCGGGCSEEEECC
T ss_pred EEEEEECCCCCCchHHHHHHHh-----CCCcEEEeCCcCcc------------------ccccchhcCCEEEECC
Confidence 6889988888887776666644 37778766554310 0123577899999964
No 132
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=74.52 E-value=27 Score=26.80 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=58.8
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||.|| |.. -| ..+|..+++ .|.+|.++|......+..... .... .....+.+.++|.||+..|.
T Consensus 2 ~~I~ii-G~G~mG--~~~a~~l~~-----~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~~~~~~~advvi~~v~~- 67 (287)
T 3pdu_A 2 TTYGFL-GLGIMG--GPMAANLVR-----AGFDVTVWNRNPAKCAPLVAL-GARQ----ASSPAEVCAACDITIAMLAD- 67 (287)
T ss_dssp CCEEEE-CCSTTH--HHHHHHHHH-----HTCCEEEECSSGGGGHHHHHH-TCEE----CSCHHHHHHHCSEEEECCSS-
T ss_pred CeEEEE-ccCHHH--HHHHHHHHH-----CCCeEEEEcCCHHHHHHHHHC-CCee----cCCHHHHHHcCCEEEEEcCC-
Confidence 488887 332 23 334444443 267888887654333322211 1000 00013446789999999996
Q ss_pred CCCcHHHHHHHH---HHhcccccccCC-CCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 82 FGMMAAQFKAFL---DATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 82 ~~~~~~~lk~fl---d~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+ +.+. ..+ +|+.+ +.++.. . ......+.+.+...|..++..++
T Consensus 68 ----~~~~~~v~~~~~~l~-----~~l~~g~~v--v~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 121 (287)
T 3pdu_A 68 ----PAAAREVCFGANGVL-----EGIGGGRGY--IDMSTV---D-DETSTAIGAAVTARGGRFLEAPV 121 (287)
T ss_dssp ----HHHHHHHHHSTTCGG-----GTCCTTCEE--EECSCC---C-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred ----HHHHHHHHcCchhhh-----hcccCCCEE--EECCCC---C-HHHHHHHHHHHHHcCCEEEECCc
Confidence 34567666 4442 123 33332 222221 1 12234556677777888876553
No 133
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=74.52 E-value=3.7 Score=25.56 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||++|.++..+..+.++++...+.+ + |++++.+++..
T Consensus 10 ~M~~v~ly~~~~Cp~C~~~~~~L~~-~----gi~~~~~~v~~ 46 (92)
T 3ic4_A 10 GMAEVLMYGLSTCPHCKRTLEFLKR-E----GVDFEVIWIDK 46 (92)
T ss_dssp TCSSSEEEECTTCHHHHHHHHHHHH-H----TCCCEEEEGGG
T ss_pred CCceEEEEECCCChHHHHHHHHHHH-c----CCCcEEEEeee
Confidence 4556555444446788876555443 3 66788888864
No 134
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=73.19 E-value=5.9 Score=26.18 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=27.2
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
..+++|+++ -+.++.+...+.+...+ .+++++.+|+.+
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e-~~i~~~~vDId~ 68 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKK-SWFELEVINIDG 68 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHH-SCCCCEEEETTT
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHh-cCCeEEEEECCC
Confidence 345556664 58898888877776665 378888999875
No 135
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=73.02 E-value=3.7 Score=33.56 Aligned_cols=100 Identities=16% Similarity=0.047 Sum_probs=49.9
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCC-CCCCCCCCCChhh--hhccCeEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGA-GPKSDVPTITPNE--LAEADGILL 76 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--l~~aD~iii 76 (203)
||+||+|+.+. |....=+-...+.++.. |++++++....-. .. ...+. .-. +....++ ..++|.|||
T Consensus 9 ~mkkV~ILl~d--gf~~~El~~p~dvL~~A-g~~v~vvS~~~g~~V~---ss~G~~~i~---~d~~l~~v~~~~~DaLiV 79 (365)
T 3fse_A 9 GKKKVAILIEQ--AVEDTEFIIPCNGLKQA-GFEVVVLGSRMNEKYK---GKRGRLSTQ---ADGTTTEAIASEFDAVVI 79 (365)
T ss_dssp --CEEEEECCT--TBCHHHHHHHHHHHHHT-TCEEEEEESSSSCCEE---CTTSCCEEC---CSEETTTCCGGGCSEEEE
T ss_pred CceEEEEEECC--CCcHHHHHHHHHHHHHC-CCEEEEEECCCCceee---cCCCceEEe---CCCCHhhCCCcCCCEEEE
Confidence 46788888754 33232233445666663 8889888765422 11 00000 000 1111222 247999998
Q ss_pred eccc-C-CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 77 GFPT-R-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 77 gsP~-y-~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..-. . .....+.+..|+.+.. -.||+++.++++
T Consensus 80 PGG~g~~~l~~~~~l~~~Lr~~~-------~~gk~IaAIC~G 114 (365)
T 3fse_A 80 PGGMAPDKMRRNPNTVRFVQEAM-------EQGKLVAAVCHG 114 (365)
T ss_dssp CCBTHHHHHTTCHHHHHHHHHHH-------HTTCEEEEETTT
T ss_pred ECCcchhhccCCHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 4321 1 1123456777777663 257777776654
No 136
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=72.42 E-value=5.1 Score=27.45 Aligned_cols=57 Identities=9% Similarity=-0.033 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCCCcHHHHHHHHHH
Q 028847 16 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 16 T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~ 95 (203)
+..+++.+++.+.+..+-++.++|+... -.-+|.+||+|..=.-.+.+...+..+.
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~------------------------s~~~DyfVIatg~S~rqv~Aiad~v~~~ 58 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGI------------------------SLIADFFLICHGNSEKQVQAIAHELKKV 58 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTT------------------------BC--CEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC------------------------CcccCEEEEEEcCCHHHHHHHHHHHHHH
Confidence 3567888888887655678999999863 2356999999987655555554444444
Q ss_pred h
Q 028847 96 T 96 (203)
Q Consensus 96 ~ 96 (203)
+
T Consensus 59 l 59 (125)
T 2o5a_A 59 A 59 (125)
T ss_dssp H
T ss_pred H
Confidence 4
No 137
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=71.68 E-value=4.9 Score=24.89 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+++. +|+++ -+.++++...+.+ . +++++.+|+.
T Consensus 4 mm~~v~-~y~~~~C~~C~~~~~~L~~-~----~i~~~~vdv~ 39 (89)
T 2klx_A 4 SMKEII-LYTRPNCPYCKRARDLLDK-K----GVKYTDIDAS 39 (89)
T ss_dssp CCCCEE-EESCSCCTTTHHHHHHHHH-H----TCCEEEECSC
T ss_pred CcceEE-EEECCCChhHHHHHHHHHH-c----CCCcEEEECC
Confidence 665555 45544 5788876665543 2 5677777765
No 138
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=71.61 E-value=7.5 Score=27.05 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+|++||..|..-.....+=.++..+.+ .|.+|+++-..
T Consensus 6 m~~kl~II~~sg~~d~~~~a~~lA~~Aaa-~g~eV~iF~t~ 45 (144)
T 2qs7_A 6 KKKKLSIIVFSGTIDKLMPVGILTSGAAA-SGYEVNLFFTF 45 (144)
T ss_dssp -CCEEEEEECCCSHHHHHHHHHHHHHHHH-TTCEEEEEECH
T ss_pred ccCCEEEEEEcCCHHHHHHHHHHHHHHHH-cCCcEEEEEeh
Confidence 45689999988753322223334444444 48899988554
No 139
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=71.28 E-value=6.2 Score=31.15 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=14.9
Q ss_pred hhhhh-ccCeEEEecccCCC
Q 028847 65 PNELA-EADGILLGFPTRFG 83 (203)
Q Consensus 65 ~~~l~-~aD~iiigsP~y~~ 83 (203)
.+++. .+|.||+++|.+..
T Consensus 65 ~~~~~~~~DlVilavK~~~~ 84 (320)
T 3i83_A 65 AAELETKPDCTLLCIKVVEG 84 (320)
T ss_dssp GGGCSSCCSEEEECCCCCTT
T ss_pred HHHcCCCCCEEEEecCCCCh
Confidence 34454 89999999999963
No 140
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=70.70 E-value=11 Score=28.20 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=20.4
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||+||.+- .+++..+++.+.+ .|+++.++....
T Consensus 25 ~~I~iiD~g-~~~~~~i~~~l~~-----~G~~~~vv~~~~ 58 (218)
T 2vpi_A 25 GAVVILDAG-AQYGKVIDRRVRE-----LFVQSEIFPLET 58 (218)
T ss_dssp TCEEEEECS-TTTTHHHHHHHHH-----TTCCEEEECTTC
T ss_pred CeEEEEECC-CchHHHHHHHHHH-----CCCEEEEEECCC
Confidence 478888432 4556656655543 267788776543
No 141
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=70.05 E-value=9.7 Score=27.70 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=28.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCC-----ceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEG-----VEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g-----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+||- -..||...+.+.+.+. | +++.+++-. ++ .++|+|||.-
T Consensus 2 ~I~iid-~~~g~~~s~~~~l~~~-----G~~~~~~~~~~~~~~------------------------~~-~~~dglilpG 50 (201)
T 1gpw_B 2 RIGIIS-VGPGNIMNLYRGVKRA-----SENFEDVSIELVESP------------------------RN-DLYDLLFIPG 50 (201)
T ss_dssp EEEEEC-CSSSCCHHHHHHHHHH-----STTBSSCEEEEECSC------------------------CS-SCCSEEEECC
T ss_pred EEEEEe-cCCchHHHHHHHHHHc-----CCCCCceEEEEECCC------------------------cc-cCCCEEEECC
Confidence 799885 3346766666655432 4 677765421 13 6789999976
Q ss_pred c
Q 028847 79 P 79 (203)
Q Consensus 79 P 79 (203)
|
T Consensus 51 ~ 51 (201)
T 1gpw_B 51 V 51 (201)
T ss_dssp C
T ss_pred C
Confidence 5
No 142
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=69.78 E-value=5.2 Score=32.69 Aligned_cols=104 Identities=5% Similarity=-0.003 Sum_probs=50.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhH------------hhhcCCCCCCCCCCCChhh-
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDV------------LGKMGAGPKSDVPTITPNE- 67 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~- 67 (203)
||+||+|+.+- |....=+....+.++++ |++++++.........+ ...... ..-.+....++
T Consensus 204 ~~~ki~ill~d--g~~~~e~~~~~~~l~~a-g~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~~~~~~~ 278 (396)
T 3uk7_A 204 ANKRILFLCGD--YMEDYEVKVPFQSLQAL-GCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPG--HTFALTTNFDDL 278 (396)
T ss_dssp CCCEEEEECCT--TEEHHHHHHHHHHHHHH-TCEEEEECTTCCTTCEECEEEEECCSSSSCEEEEC--CCEECCSCGGGC
T ss_pred ccceEEEEecC--CCcchhHHHHHHHHHHC-CCEEEEECCCCCCCcccccccccccccchhhhcCC--ceeeccCCHHHC
Confidence 46788887653 33222233445666663 78888876543211000 000000 00001111233
Q ss_pred -hhccCeEEEeccc-C-CCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 68 -LAEADGILLGFPT-R-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 68 -l~~aD~iiigsP~-y-~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|.||+-.-. . +..-.+.+..|+.+.. -++|+++.++++
T Consensus 279 ~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~-------~~~~~i~aiC~g 323 (396)
T 3uk7_A 279 VSSSYDALVIPGGRAPEYLALNEHVLNIVKEFM-------NSEKPVASICHG 323 (396)
T ss_dssp CGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHH-------HTTCCEEEEGGG
T ss_pred CcccCCEEEECCCcchhhhccCHHHHHHHHHHH-------HCCCEEEEEchH
Confidence 4689999994321 0 1122455667776653 257777777664
No 143
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=69.49 E-value=11 Score=27.25 Aligned_cols=45 Identities=2% Similarity=0.048 Sum_probs=28.0
Q ss_pred hhhhccCeEEEecccCCCCc---HHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMM---AAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~---~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+.+...|.||.......... ....+++++.+. ....+++..+++.
T Consensus 57 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~------~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 57 SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLN------GTVSPRLLVVGGA 104 (221)
T ss_dssp HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHC------SCCSSEEEEECCC
T ss_pred hhhcCCCEEEECCcCCccccchHHHHHHHHHHHHH------hcCCceEEEEecc
Confidence 56788999998876643322 244577777774 2234566655554
No 144
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=69.46 E-value=9.1 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=22.2
Q ss_pred CceEEEEEecCcchHH-----HHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVE-----KLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~-----~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++|.|+..|.-+.++ .-|..+.+. .|++.+.+|+..
T Consensus 1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~----~~i~~~~~di~~ 42 (93)
T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTRILDG----KRIQYQLVDISQ 42 (93)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHH----TTCCCEEEETTS
T ss_pred CCCEEEEEcCCCCCchhhHHHHHHHHHHHH----CCCceEEEECCC
Confidence 3566655444457773 334444443 378888998864
No 145
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=69.43 E-value=6.1 Score=28.94 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=39.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCC--CCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVP--TITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~aD~iiigsP 79 (203)
||||+|. |-|-.+...+.+.|.+ .|.+|..++-............... .-|.. ......+...|.||....
T Consensus 4 m~~ilIt-----GatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVLI-----GASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIENEHLKVK-KADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCEEEEE-----TCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCCTTEEEE-CCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEE-----cCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhccCceEEE-EecCCCHHHHHHHhcCCCEEEEeCc
Confidence 4577764 3334566666666666 3777776654422111000000000 00111 111234667899998875
Q ss_pred cCCCCc------HHHHHHHHHHh
Q 028847 80 TRFGMM------AAQFKAFLDAT 96 (203)
Q Consensus 80 ~y~~~~------~~~lk~fld~~ 96 (203)
..+... -...+++++.+
T Consensus 77 ~~~~~~~~~~~n~~~~~~l~~~~ 99 (227)
T 3dhn_A 77 PGWNNPDIYDETIKVYLTIIDGV 99 (227)
T ss_dssp C------CCSHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHH
Confidence 542221 22345666665
No 146
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=68.37 E-value=14 Score=25.12 Aligned_cols=41 Identities=12% Similarity=-0.077 Sum_probs=26.2
Q ss_pred CCceEEEEEecC-cc-hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSM-YG-HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~-~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+|++||..|. ++ .....+=.++..+.+ .|.+|.++-..+
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a-~g~eV~vFf~~d 56 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISAS-MEYETSVFFMIX 56 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEeC
Confidence 357999988885 33 344444455655555 388998776554
No 147
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=68.02 E-value=14 Score=26.13 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=40.3
Q ss_pred CCceEEEEE-ecC----cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhc--cCe
Q 028847 1 MATKVYIVY-YSM----YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE--ADG 73 (203)
Q Consensus 1 mm~kilIiy-~S~----~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aD~ 73 (203)
|.||++|+- |.. .|---.+++.+++.+ + +++++|....... + ...+.+ +|.
T Consensus 1 M~m~ilVlGiGN~L~gDDG~G~~v~~~L~~~~---p--~v~vid~Gt~~~~-l----------------~~~l~~~~~d~ 58 (157)
T 3pu6_A 1 MSLKKVLLCVGNELRGDDGVAIALGRLVEEQM---P--EWSVFFGYDTPES-E----------------FGKLRELAPDV 58 (157)
T ss_dssp --CCEEEEEECCTTBGGGGHHHHHHHHHHHHC---T--TEEEEEEETCGGG-G----------------HHHHHHHCCSE
T ss_pred CCCCEEEEEECCcccccccHHHHHHHHHHhhC---C--CeEEEECCCCHHH-H----------------HHHHHhcCCCE
Confidence 645888774 553 367788888887433 2 5888887653221 1 345665 999
Q ss_pred EEEecccCCCCcHHHHH
Q 028847 74 ILLGFPTRFGMMAAQFK 90 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk 90 (203)
+||.=-+ .+.-|+.++
T Consensus 59 lIiVDA~-~g~~PGti~ 74 (157)
T 3pu6_A 59 IVVADAM-SGFKEGEIE 74 (157)
T ss_dssp EEEEEEE-EC----CEE
T ss_pred EEEEEec-CCCCCcEEE
Confidence 9998777 777777544
No 148
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=68.01 E-value=8 Score=30.81 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=29.7
Q ss_pred CceEEEEEecC---cchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 2 ATKVYIVYYSM---YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilIiy~S~---~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||||++|.... .|.....+..+++.+.+. |.+|.++.....
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~ 63 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA-GHEVSVLAPASP 63 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT-TCEEEEEESCCT
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCc
Confidence 45999987542 266677777888888874 899998877653
No 149
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=68.00 E-value=3.7 Score=33.19 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=42.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCC-CCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKS-DVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|||+|+ |+ |.+- +.+++.|.+ ..++.+.+......+..........-| ..+....+.+.++|.||-..|-+
T Consensus 17 mkilvl-Ga--G~vG---~~~~~~L~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 17 MKVLIL-GA--GNIG---RAIAWDLKD--EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp CEEEEE-CC--SHHH---HHHHHHHTT--TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred cEEEEE-CC--CHHH---HHHHHHHhc--CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 388876 76 5533 334444544 347877776542221111000000001 00111234568999999999987
Q ss_pred CCCcHHHHHHHHHHh
Q 028847 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~lk~fld~~ 96 (203)
.+ +..++..++.-
T Consensus 89 ~~--~~v~~~~~~~g 101 (365)
T 3abi_A 89 LG--FKSIKAAIKSK 101 (365)
T ss_dssp GH--HHHHHHHHHHT
T ss_pred cc--chHHHHHHhcC
Confidence 43 45667776653
No 150
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=66.69 E-value=14 Score=28.57 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=28.8
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|||+|+++..+. -+..=+..+.+.+++ .|+++..+++.+
T Consensus 4 m~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (307)
T 3r5x_A 4 MRIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNE 45 (307)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSS
T ss_pred cEEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccC
Confidence 499999987532 234446788888887 489999998874
No 151
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=66.65 E-value=14 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=49.7
Q ss_pred EEEEEec-CcchHHHHHHHHHHHhhcc--CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 5 VYIVYYS-MYGHVEKLAEEIQKGAASV--EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 5 ilIiy~S-~~G~T~~la~~i~~~l~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+|-+|-+ .+.++.+..+.+.+.+++. ..++.+++|+.+- ..+.+.|. |++||+-
T Consensus 9 ~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~----------------------PelAe~~~-IvAtPTL 65 (105)
T 1wwj_A 9 VLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKN----------------------PQLAEEDK-ILATPTL 65 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTC----------------------CSCCTTCE-EECHHHH
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccC----------------------HhHHhHCC-eEEechh
Confidence 4566766 5667777777766655432 4678999999763 13334343 6799999
Q ss_pred CCCcHHHHHHHHHHhc
Q 028847 82 FGMMAAQFKAFLDATG 97 (203)
Q Consensus 82 ~~~~~~~lk~fld~~~ 97 (203)
--..|.+.+.++-.++
T Consensus 66 iK~~P~P~rriiGDLs 81 (105)
T 1wwj_A 66 AKILPPPVRKIIGDLS 81 (105)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred hhcCCCCceeEeecCC
Confidence 9889999999998875
No 152
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=66.56 E-value=5.8 Score=32.18 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=27.1
Q ss_pred CceEEEEEec--C--------cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYS--M--------YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S--~--------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||||++|..+ + .|-.+..+..+++.+.+ .|++|.++-...
T Consensus 20 mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 69 (438)
T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAK-QGIEVDIYTRAT 69 (438)
T ss_dssp CCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred hheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEecCC
Confidence 4599999853 2 24556667777788877 488999886554
No 153
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=64.83 E-value=6.8 Score=30.94 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=27.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|+|++||+-...+.....++.+.+.+++. |+++.+.
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~-g~~v~~~ 39 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDN-KIALRVL 39 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTT-TCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHC-CCEEEEe
Confidence 57899888665677777889999999884 8877654
No 154
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=64.41 E-value=4.3 Score=24.41 Aligned_cols=42 Identities=5% Similarity=0.038 Sum_probs=21.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVE-GVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~-g~~v~~~~l~~ 42 (203)
||.+++.++.+.-+.++++...+.+...+.. ++.+..+|+.+
T Consensus 1 mm~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 43 (85)
T 1nho_A 1 MVVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV 43 (85)
T ss_dssp CCCCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT
T ss_pred CeEEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 6655555554445666666655544333211 44555555543
No 155
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=64.36 E-value=4.8 Score=25.99 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=9.6
Q ss_pred hhhccCeEEEeccc
Q 028847 67 ELAEADGILLGFPT 80 (203)
Q Consensus 67 ~l~~aD~iiigsP~ 80 (203)
.+..+|.||..+|.
T Consensus 66 ~~~~~d~vi~~~~~ 79 (118)
T 3ic5_A 66 ALGGFDAVISAAPF 79 (118)
T ss_dssp HTTTCSEEEECSCG
T ss_pred HHcCCCEEEECCCc
Confidence 34577888887764
No 156
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=64.06 E-value=42 Score=25.47 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=34.1
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
+.+.++|.||+.+|.. ..++..++.+.. .++.... ++.++.. ... ....+.+.+...|..+++.+
T Consensus 51 ~~~~~~D~vi~~v~~~-----~~~~~v~~~l~~-----~l~~~~~-vv~~s~~--~~~--~~~~l~~~~~~~g~~~~~~p 115 (289)
T 2cvz_A 51 ERVAEARVIFTCLPTT-----REVYEVAEALYP-----YLREGTY-WVDATSG--EPE--ASRRLAERLREKGVTYLDAP 115 (289)
T ss_dssp GGGGGCSEEEECCSSH-----HHHHHHHHHHTT-----TCCTTEE-EEECSCC--CHH--HHHHHHHHHHTTTEEEEECC
T ss_pred HHHhCCCEEEEeCCCh-----HHHHHHHHHHHh-----hCCCCCE-EEECCCC--CHH--HHHHHHHHHHHcCCEEEEec
Confidence 3467899999999863 235666666531 2332222 2222221 111 13445566665576666543
No 157
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=63.36 E-value=11 Score=28.83 Aligned_cols=100 Identities=15% Similarity=0.023 Sum_probs=48.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh-hccCeEEEecc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-AEADGILLGFP 79 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~iiigsP 79 (203)
|++||.|+.+- |.+..=+-...+.++...|++++++........ ...+-.-. +....+++ ..+|.|||-.-
T Consensus 22 m~~~I~ill~~--gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~---~~~G~~i~---~d~~l~~~~~~yD~liVPGG 93 (253)
T 3ewn_A 22 GDEQIAMLVYP--GMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVT---SDAGLAIV---PTATFGTCPRDLTVLFAPGG 93 (253)
T ss_dssp CCCEEEEECCT--TBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEE---CTTSCEEC---CSEETTTSCSSCSEEEECCB
T ss_pred CCeEEEEEeCC--CCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEE---cCCCCEEe---CCcCHHHcCCCCCEEEECCC
Confidence 55688887654 332322334456663225888888876542211 00000000 00011222 25699998432
Q ss_pred c---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 80 T---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 80 ~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
. ....-.+.+..||.+.. -+||.++.+++
T Consensus 94 ~~g~~~l~~~~~l~~~Lr~~~-------~~gk~IaaICt 125 (253)
T 3ewn_A 94 TDGTLAAASDAETLAFMADRG-------ARAKYITSVCS 125 (253)
T ss_dssp SHHHHHHTTCHHHHHHHHHHH-------TTCSEEEEETT
T ss_pred ccchhhhccCHHHHHHHHHHH-------HcCCEEEEECh
Confidence 1 22223456777777663 24555555544
No 158
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=63.12 E-value=17 Score=26.38 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=24.7
Q ss_pred hhhhccCeEEEecccCCC-C-c---HHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFG-M-M---AAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~-~-~---~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+...|.||......|. . . ....+++++.+. -.|+++..+++.
T Consensus 58 ~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~-------~~~~~~v~~SS~ 106 (224)
T 3h2s_A 58 ADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLR-------NSDTLAVFILGS 106 (224)
T ss_dssp HHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCT-------TCCCEEEEECCG
T ss_pred hhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecc
Confidence 567889999987765421 1 1 122455555542 234666666554
No 159
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=62.77 E-value=20 Score=21.37 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=28.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++.+++.+.-+.++++...+.+.+.+ .+.+++++++..
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~v~~ 40 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDP-SKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCT-TTEEEEEEETTT
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHh-cCCeEEEEEecC
Confidence 45555555568999999988887876 477888888864
No 160
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=62.76 E-value=2 Score=31.16 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=23.1
Q ss_pred ccCeEEEecc-cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 70 EADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 70 ~aD~iiigsP-~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
++|.||+... .+...-.+.+..|+.+.. -.+|+++.++++
T Consensus 63 ~~D~livpGG~~~~~~~~~~l~~~l~~~~-------~~~k~i~aiC~G 103 (188)
T 2fex_A 63 DIDALVIPGGLSWEKGTAADLGGLVKRFR-------DRDRLVAGICAA 103 (188)
T ss_dssp TCSEEEECCBSHHHHTCCCCCHHHHHHHH-------HTTCEEEEETHH
T ss_pred cCCEEEECCCCcccccccHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 7899888643 121112344556666553 257888877664
No 161
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=62.76 E-value=19 Score=25.41 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=25.8
Q ss_pred hhccCeEEEecc----cC-CCC---cHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 68 LAEADGILLGFP----TR-FGM---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 68 l~~aD~iiigsP----~y-~~~---~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|.||+... -. .-. ..+.+..|+.+.. -+||+++.++++
T Consensus 64 ~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~-------~~gk~i~aiC~G 113 (175)
T 3cne_A 64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFG-------EKGKMMIGHCAG 113 (175)
T ss_dssp GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred cccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 378999998643 11 111 3466777777763 257777766554
No 162
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=61.96 E-value=5.8 Score=30.76 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=17.4
Q ss_pred hhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 68 LAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 68 l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
+.++|.||+++|.+ .++..++.+.
T Consensus 72 ~~~~d~vi~~v~~~------~~~~v~~~l~ 95 (316)
T 2ew2_A 72 NEQVDLIIALTKAQ------QLDAMFKAIQ 95 (316)
T ss_dssp SCCCSEEEECSCHH------HHHHHHHHHG
T ss_pred CCCCCEEEEEeccc------cHHHHHHHHH
Confidence 34899999999975 3566666664
No 163
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=61.39 E-value=12 Score=33.58 Aligned_cols=100 Identities=15% Similarity=-0.047 Sum_probs=58.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChh--hhhccCeEEEecc-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPN--ELAEADGILLGFP- 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~aD~iiigsP- 79 (203)
+||+|+.+ .|..+.-+..+.+.|+++ |++++++....-.. ....+..-. +....+ .-..+|+|||-.-
T Consensus 601 rKVaILla--DGfEe~El~~pvdaLr~A-G~~V~vVS~~~g~V---~gs~G~~V~---aD~t~~~v~s~~fDALVVPGGg 671 (753)
T 3ttv_A 601 RVVAILLN--DEVRSADLLAILKALKAK-GVHAKLLYSRMGEV---TADDGTVLP---IAATFAGAPSLTVDAVIVPCGN 671 (753)
T ss_dssp CEEEEECC--TTCCHHHHHHHHHHHHHH-TCEEEEEESSSSEE---ECTTSCEEE---CCEETTTSCGGGCSEEEECCSC
T ss_pred CEEEEEec--CCCCHHHHHHHHHHHHHC-CCEEEEEEcCCCeE---EeCCCCEEe---cccchhhCCCcCCCEEEECCCC
Confidence 57888765 355555566777888774 89999987754211 100000000 000112 2346999999543
Q ss_pred cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 80 TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.-.....+.+..|+.... -.+|+++.++++.+
T Consensus 672 ~~~Lr~d~~vl~~Vre~~-------~~gKpIAAIC~Gp~ 703 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAY-------KHLKPIALAGDARK 703 (753)
T ss_dssp GGGTTTCHHHHHHHHHHH-------HTTCCEEEEGGGGG
T ss_pred hHHhhhCHHHHHHHHHHH-------hcCCeEEEECchHH
Confidence 111234567788887764 36999998877654
No 164
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=61.21 E-value=31 Score=24.53 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=30.7
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCc-eEEEEEcCCC
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGV-EAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~-~v~~~~l~~~ 43 (203)
.||.||....+. -|..|.+-..+.+.+. |+ +++++.++-.
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~-G~~~i~v~~VPGa 59 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGC-GLDDPTVVRVLGA 59 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHT-TCSCCEEEEESSG
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc-CCCceEEEECCcH
Confidence 378998877654 4889999888888884 77 7788887754
No 165
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=60.63 E-value=41 Score=23.62 Aligned_cols=75 Identities=11% Similarity=-0.040 Sum_probs=42.9
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
...+..+|++|+....-...-...++.|++.+... ...++++.++++--.-..................++.++.
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 45678899999998876655455667777766421 2357888888774221110011123344445555665543
No 166
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=60.04 E-value=19 Score=31.93 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=56.1
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||+|+.. .| ....-+..+.+.|+++ |++++++-...-. + -+.. .....-..+|+|||-.-.-
T Consensus 538 rKVaILva--dG~fE~~El~~p~~aL~~a-Ga~V~vVsp~~g~--------G----vD~t-~~~~~s~~fDAVvlPGG~~ 601 (688)
T 3ej6_A 538 LRVGVLST--TKGGSLDKAKALKEQLEKD-GLKVTVIAEYLAS--------G----VDQT-YSAADATAFDAVVVAEGAE 601 (688)
T ss_dssp CEEEEECC--SSSSHHHHHHHHHHHHHHT-TCEEEEEESSCCT--------T----CCEE-TTTCCGGGCSEEEECTTCC
T ss_pred CEEEEEcc--CCCccHHHHHHHHHHHHHC-CCEEEEEeCCCCC--------C----cccC-cccCChhcCcEEEECCCcc
Confidence 57888864 34 4555567778888884 9999998765320 0 0000 0112456899999954321
Q ss_pred C----------CCcHHHHHHHHHHhcccccccCCCCCeEEEEEccC
Q 028847 82 F----------GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 117 (203)
Q Consensus 82 ~----------~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
. -...+.+..|+.... -.+|+++.++.+.
T Consensus 602 ~~~~~~~~~d~Lr~~~~a~~fV~e~~-------~hgKpIAAIchgp 640 (688)
T 3ej6_A 602 RVFSGKGAMSPLFPAGRPSQILTDGY-------RWGKPVAAVGSAK 640 (688)
T ss_dssp TTTSTTTTCCTTSCTTHHHHHHHHHH-------HTTCCEEEEGGGH
T ss_pred cccccccchhhhccCHHHHHHHHHHH-------HcCCEEEEeCccH
Confidence 1 233456777777663 2589999886543
No 167
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=59.96 E-value=17 Score=29.19 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=30.0
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|||+++..+. .|-.+..+..+++.+.+ .|++|.++-...
T Consensus 41 mkIl~v~~~~~~GG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 80 (416)
T 2x6q_A 41 RSFVHVNSTSFGGGVAEILHSLVPLLRS-IGIEARWFVIEG 80 (416)
T ss_dssp CEEEEEESCSSSSTHHHHHHHHHHHHHH-TTCEEEEEECCC
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 5899998775 46677778888888887 489998876654
No 168
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=59.31 E-value=37 Score=23.50 Aligned_cols=82 Identities=9% Similarity=-0.078 Sum_probs=46.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhhh-hccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNEL-AEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~iiigsP 79 (203)
|++|-||..|.....+.+++.+...+.+. ..+..+++.... ++.+.+... ...+++ .+.|.|+|-+=
T Consensus 1 M~~igiii~sHG~~A~gl~~~~~~i~G~~--~~v~av~~~~~~~~~~~~~~i~---------~~i~~~~~~~~gvliLtD 69 (144)
T 3lfh_A 1 MKEKFVLIITHGDFGKGLLSGAEVIIGKQ--ENVHTVGLNLGDNIEVVRKEVE---------KIIKEKLQEDKEIIIVVD 69 (144)
T ss_dssp CCCEEEEEEEETTHHHHHHHHHHHHHCCC--SSEEEEEECTTCCHHHHHHHHH---------HHHHHHHTTTCEEEEEES
T ss_pred CCcceEEEEeCcHHHHHHHHHHHHHcCCC--CcEEEEEccCCCCHHHHHHHHH---------HHHHHhhCCCCcEEEEEe
Confidence 34565555553334555666655555441 257888886533 333222100 013445 56799999999
Q ss_pred cCCCCcHHHHHHHHH
Q 028847 80 TRFGMMAAQFKAFLD 94 (203)
Q Consensus 80 ~y~~~~~~~lk~fld 94 (203)
.|.|++.-....+.+
T Consensus 70 l~GGSp~n~a~~l~~ 84 (144)
T 3lfh_A 70 LFGGSPFNIALSMMK 84 (144)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 999988776655543
No 169
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=59.06 E-value=40 Score=23.00 Aligned_cols=47 Identities=6% Similarity=0.033 Sum_probs=32.6
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+.. ...++++.++++-
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK 122 (181)
T 3tw8_B 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVGNK 122 (181)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----HCTTSEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 4567889999999877665444556667776642 3457888887764
No 170
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=58.60 E-value=41 Score=23.44 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=31.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...--..++.|++.+... ...++++.++++-
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK 130 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNK 130 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45678899999988766544334566676666421 2357788887774
No 171
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=58.39 E-value=47 Score=23.61 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=39.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC---CCchhH----hhhcCCCCCCCCCC-CChhhhhccC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE---TLSEDV----LGKMGAGPKSDVPT-ITPNELAEAD 72 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~---~~~~~~----~~~~~~~~~~~~~~-~~~~~l~~aD 72 (203)
||+|||.|+.-... -..||+.+.+.+.. +++|..-=+.. ..+++. +...+-......+. ....++.++|
T Consensus 21 mm~~VLFVCtgN~c-RSpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l~~~~~~~~D 97 (167)
T 2fek_A 21 MFNNILVVCVGNIC-RSPTAERLLQRYHP--ELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYD 97 (167)
T ss_dssp CCCEEEEEESSSSS-HHHHHHHHHHHHCT--TCEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHHHSS
T ss_pred ccCeEEEEcCCcHH-HHHHHHHHHHHhcC--CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCccCCcCccCCHHHhccCC
Confidence 67789988844333 34578888776643 44444333321 112111 11112111222222 2456788999
Q ss_pred eEEEeccc
Q 028847 73 GILLGFPT 80 (203)
Q Consensus 73 ~iiigsP~ 80 (203)
.||..+..
T Consensus 98 lIitM~~~ 105 (167)
T 2fek_A 98 LILTMEKR 105 (167)
T ss_dssp EEEESCHH
T ss_pred EEEEcCHH
Confidence 99987664
No 172
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=57.91 E-value=45 Score=23.23 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=31.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..++.|++.+... ...++++.++++-
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 136 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGNK 136 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45678999999998765543334456666665421 2457888888774
No 173
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=57.67 E-value=16 Score=25.95 Aligned_cols=65 Identities=17% Similarity=-0.013 Sum_probs=32.2
Q ss_pred CCceEEEEEecC--------cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh-cc
Q 028847 1 MATKVYIVYYSM--------YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA-EA 71 (203)
Q Consensus 1 mm~kilIiy~S~--------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~a 71 (203)
|++|+.||.-+. ..|+..+++.+.+.+++ .|+++..+.+-..+++.+.+. ..+.+. ++
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~-~G~~v~~~~iv~Dd~~~I~~~------------l~~a~~~~~ 70 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQD-YSYELISEVVVPEGYDTVVEA------------IATALKQGA 70 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC-----CEEEEEEEEEECSSHHHHHHH------------HHHHHHTTC
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHH-CCCEEeEEEEeCCCHHHHHHH------------HHHHHhCCC
Confidence 445888877552 24667776663333555 377765544433333333221 122334 48
Q ss_pred CeEEEec
Q 028847 72 DGILLGF 78 (203)
Q Consensus 72 D~iiigs 78 (203)
|.||..-
T Consensus 71 DlVittG 77 (167)
T 2g2c_A 71 RFIITAG 77 (167)
T ss_dssp SEEEEES
T ss_pred CEEEECC
Confidence 8887763
No 174
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=57.61 E-value=13 Score=30.79 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=29.3
Q ss_pred ceEEEEEec--------------CcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYS--------------MYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S--------------~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|||++|..+ ..|-.+..+..+++.+.+. |++|.++-...
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~ 60 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM-GVQVDIITRRI 60 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT-TCEEEEEEECC
T ss_pred ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhc-CCeEEEEeCCC
Confidence 489998753 1466777888888888874 89999886543
No 175
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=57.31 E-value=38 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=31.1
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|+.||....+. -|..|.+-..+.+.+. |.+++++.++-.
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~-G~~i~v~~VPGa 53 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDEA-GATYDVVTVPGA 53 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHT-TCEEEEEEESSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH
Confidence 78988877654 4889999888888884 778888888754
No 176
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=57.12 E-value=6.6 Score=26.57 Aligned_cols=34 Identities=6% Similarity=0.013 Sum_probs=19.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++++|+ |. |. +...+++.|.+ .|.+|.++|...
T Consensus 6 ~~~v~I~-G~--G~---iG~~la~~L~~-~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVI-GS--EA---AGVGLVRELTA-AGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEE-CC--SH---HHHHHHHHHHH-TTCCEEEEESCH
T ss_pred CCEEEEE-CC--CH---HHHHHHHHHHH-CCCeEEEEECCH
Confidence 3466665 33 32 44445555555 378899888653
No 177
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=57.10 E-value=24 Score=28.33 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=19.6
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
+.+.++|.||++.|.+ .++..++.+.
T Consensus 99 ea~~~aDvVilav~~~------~~~~vl~~i~ 124 (375)
T 1yj8_A 99 SVINDADLLIFIVPCQ------YLESVLASIK 124 (375)
T ss_dssp HHHTTCSEEEECCCHH------HHHHHHHHHT
T ss_pred HHHcCCCEEEEcCCHH------HHHHHHHHHh
Confidence 3467899999999973 5677777664
No 178
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=56.89 E-value=13 Score=29.90 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=28.7
Q ss_pred ceEEEEEec----CcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYS----MYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S----~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|||++|..+ ..|-....+..+++.+.+. |++|.++-..
T Consensus 3 MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~-G~~V~v~~~~ 44 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASL-GHEVLVFTPS 44 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred eEEEEEecccCCcccCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 399998755 2466777788888888874 8999988743
No 179
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=56.68 E-value=10 Score=26.99 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=25.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceE--EEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEA--KLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v--~~~~l~~ 42 (203)
||.||.||....+. ..|.+-..+.+.+. |++. .++.++-
T Consensus 1 m~~ri~IV~arfn~--~~Ll~gA~~~L~~~-G~~~~i~~~~VPG 41 (156)
T 2b99_A 1 MTKKVGIVDTTFAR--VDMASIAIKKLKEL-SPNIKIIRKTVPG 41 (156)
T ss_dssp -CCEEEEEEESSCS--SCCHHHHHHHHHHH-CTTCEEEEEEESS
T ss_pred CCcEEEEEEEecch--HHHHHHHHHHHHHc-CCCCeEEEEECCc
Confidence 77799999877655 66777777777764 6543 3355554
No 180
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=56.35 E-value=36 Score=25.05 Aligned_cols=134 Identities=7% Similarity=0.045 Sum_probs=64.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcc--C--CceE--EEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASV--E--GVEA--KLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 77 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~--~--g~~v--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig 77 (203)
||+||-.+.-|-|..+-+.+...+... + |++. ..+.+...... +.-.....++.+.......+..+|++|+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~--l~iwDtaGqe~~~~l~~~~~~~a~~~ilv 92 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR--LQLWDTAGLERFRSLIPSYIRDSAAAVVV 92 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEE--EEEECCSCTTTCGGGHHHHHTTCSEEEEE
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEE--EEEEECCCchhhhhHHHHHhccccEEEEE
Confidence 677766666799988777665444221 1 1111 11111111100 00000111112222224467899999999
Q ss_pred cccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 78 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 78 sP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
+-+-.-.--..++.|++.+... .-.+-++.++++----.........+........|+.++.
T Consensus 93 ~di~~~~Sf~~i~~~~~~i~~~----~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 93 YDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred eecchhHHHHHHHHHHHHHHHh----cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEE
Confidence 9887766666677788776421 2245677776653211110011123333444556776553
No 181
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=56.19 E-value=30 Score=22.93 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=36.3
Q ss_pred EEEE-EecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCCC
Q 028847 5 VYIV-YYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFG 83 (203)
Q Consensus 5 ilIi-y~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
++|| +||..+ .+...++.+++ .|+++.++++....|-+.- ...+.+..++.||+.==.+.|
T Consensus 16 v~iv~~Gs~~~----~a~eA~~~L~~-~Gi~v~vi~~r~~~P~d~~-------------~l~~~~~~~~~vvvvE~~~~G 77 (118)
T 3ju3_A 16 ITFVTWGSQKG----PILDVIEDLKE-EGISANLLYLKMFSPFPTE-------------FVKNVLSSANLVIDVESNYTA 77 (118)
T ss_dssp EEEEEEGGGHH----HHHHHHHHHHH-TTCCEEEEEECSSCSCCHH-------------HHHHHHTTCSCCCCCCCCCCC
T ss_pred EEEEEECccHH----HHHHHHHHHHH-CCCceEEEEECeEecCCHH-------------HHHHHHcCCCEEEEEECCCCC
Confidence 4444 555444 44444555655 4889999999876431100 012345566666544333345
Q ss_pred CcHHHHHH
Q 028847 84 MMAAQFKA 91 (203)
Q Consensus 84 ~~~~~lk~ 91 (203)
++...++.
T Consensus 78 ~l~~~i~~ 85 (118)
T 3ju3_A 78 QAAQMIKL 85 (118)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 55555543
No 182
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=56.09 E-value=34 Score=30.08 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=33.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEE-ecccC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPTR 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii-gsP~y 81 (203)
+|+||- ...++|..+++.+.+ .|++++++..... .++.++|+||| +.|--
T Consensus 448 ~IlviD-~gdsf~~~l~~~l~~-----~G~~v~Vv~~d~~----------------------~~~~~~DgIIlsGGPg~ 498 (645)
T 3r75_A 448 RALIVD-AEDHFTAMIAQQLSS-----LGLATEVCGVHDA----------------------VDLARYDVVVMGPGPGD 498 (645)
T ss_dssp EEEEEE-SSCTHHHHHHHHHHH-----TTCEEEEEETTCC----------------------CCGGGCSEEEECCCSSC
T ss_pred EEEEEE-CCccHHHHHHHHHHH-----CCCEEEEEECCCc----------------------ccccCCCEEEECCCCCC
Confidence 677664 335688888888765 2778888766431 14568899999 55543
No 183
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=56.07 E-value=39 Score=23.79 Aligned_cols=67 Identities=6% Similarity=0.034 Sum_probs=45.5
Q ss_pred eEEEE-EecC----cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIV-YYSM----YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIi-y~S~----~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|++|+ +|.. .|---.+++.+.+...- ..+++++|.....++ ....+.++|.+||.=
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~--p~~v~vid~gt~~~~-----------------l~~~l~~~d~lIiVD 62 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYIL--PDYVEILDGGTAGME-----------------LLGDMANRDHLIIAD 62 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEEC--CTTEEEEEEETCCGG-----------------GHHHHSSCSEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCC--CCCeEEEECCCCHHH-----------------HHHHHhCCCEEEEEE
Confidence 67776 4554 37778888888775321 125888988875433 245788899999987
Q ss_pred cc-CCCCcHHHH
Q 028847 79 PT-RFGMMAAQF 89 (203)
Q Consensus 79 P~-y~~~~~~~l 89 (203)
-+ ..+.-|+.+
T Consensus 63 A~~~~g~~PGti 74 (162)
T 1cfz_A 63 AIVSKKNAPGTM 74 (162)
T ss_dssp ECCSSCSCTTCE
T ss_pred ehhhcCCCCCEE
Confidence 77 677777643
No 184
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=55.93 E-value=19 Score=22.79 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCceEEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||..-++||++++ +.+.++-+.+ + + .|++.+.+|+..
T Consensus 1 M~ta~I~vYs~~~Cp~C~~aK~~L-~---~-~gi~y~~idi~~ 38 (92)
T 2lqo_A 1 MVTAALTIYTTSWCGYCLRLKTAL-T---A-NRIAYDEVDIEH 38 (92)
T ss_dssp CCSSCEEEEECTTCSSHHHHHHHH-H---H-TTCCCEEEETTT
T ss_pred CCCCcEEEEcCCCCHhHHHHHHHH-H---h-cCCceEEEEcCC
Confidence 6655566676653 7787743333 3 3 388999999975
No 185
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=55.39 E-value=18 Score=21.65 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=23.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|++++.+.-+.++++...+.+...+..++++..+|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~ 40 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRA 40 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 666544444688888777665543321366777777643
No 186
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=55.29 E-value=37 Score=26.41 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=58.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||.|| |. |+ |...++..+.+ .|.+|.++|......+..... +... .....+.+.++|.||+..|.
T Consensus 9 ~~~IgiI-G~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~~e~~~~aDvVi~~vp~- 75 (306)
T 3l6d_A 9 EFDVSVI-GL--GA---MGTIMAQVLLK-QGKRVAIWNRSPGKAAALVAA-GAHL----CESVKAALSASPATIFVLLD- 75 (306)
T ss_dssp SCSEEEE-CC--SH---HHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHH-TCEE----CSSHHHHHHHSSEEEECCSS-
T ss_pred CCeEEEE-CC--CH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHC-CCee----cCCHHHHHhcCCEEEEEeCC-
Confidence 3478776 33 32 33444444444 377888877653222221111 1100 00113456789999999985
Q ss_pred CCCcHHHHHHHHH--HhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 82 FGMMAAQFKAFLD--ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 82 ~~~~~~~lk~fld--~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+. .+. ...+|+.+. .++.... . ....+.+.+...|..+++.++
T Consensus 76 ----~~~~~~v~~~~~l~-----~~~~g~ivi--d~st~~~-~---~~~~l~~~~~~~g~~~vdapv 127 (306)
T 3l6d_A 76 ----NHATHEVLGMPGVA-----RALAHRTIV--DYTTNAQ-D---EGLALQGLVNQAGGHYVKGMI 127 (306)
T ss_dssp ----HHHHHHHHTSTTHH-----HHTTTCEEE--ECCCCCT-T---HHHHHHHHHHHTTCEEEEEEE
T ss_pred ----HHHHHHHhcccchh-----hccCCCEEE--ECCCCCH-H---HHHHHHHHHHHcCCeEEeccc
Confidence 334666654 221 123444332 2222211 1 134566777777888876543
No 187
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=54.77 E-value=40 Score=23.75 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=41.1
Q ss_pred CceEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh
Q 028847 2 ATKVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL 68 (203)
Q Consensus 2 m~kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (203)
|+||+|++|-. +|+ -+.+-+.+.+...+ .|++++.+.-+.. ..+++. ..+..
T Consensus 4 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~E--geLId~------------Ih~a~ 68 (151)
T 3u80_A 4 MTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKD-LGLEVEVRQTDDE--AEMVRW------------MHQAA 68 (151)
T ss_dssp CEEEEEEECSCC------------CHHHHHHHHHHHHHHHH-TTEEEEEEECSCH--HHHHHH------------HHHHH
T ss_pred CCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHHHH------------HHHhh
Confidence 56899999885 354 23334455555555 4888887765432 111110 12234
Q ss_pred hccCeEEEecccCCCCcHHHHHHH
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~f 92 (203)
.++|+|||=---|-. -|-.++..
T Consensus 69 ~~~dgiiINpgA~TH-tSvAlrDA 91 (151)
T 3u80_A 69 DEKTPVVMNPAAFTH-YSYALADA 91 (151)
T ss_dssp HHTCCEEEECTTCCS-CCHHHHHH
T ss_pred hcCcEEEECcchhhh-hhHHHHHH
Confidence 568999987776642 23334554
No 188
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=54.76 E-value=50 Score=22.85 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=39.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC---CCchhH----hhhcCCCCCCCCCC-CChhhhhccC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE---TLSEDV----LGKMGAGPKSDVPT-ITPNELAEAD 72 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~---~~~~~~----~~~~~~~~~~~~~~-~~~~~l~~aD 72 (203)
||+|||.|+..... -..||+.+.+.+.. +++|..-=+.. ..+++. +...+-......+. .....+.++|
T Consensus 7 mm~~VLFVC~gN~c-RSpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~~l~e~Gid~~~~~ar~l~~~~~~~~D 83 (150)
T 2wmy_A 7 MFDSILVICTGNIC-RSPIGERLLRRLLP--SKKINSAGVGALVDHTADESAIRVAEKNGLCLKGHRGTKFTSALARQYD 83 (150)
T ss_dssp CCCEEEEEESSSSS-HHHHHHHHHHHHCT--TSEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHTTCS
T ss_pred hcCEEEEEcCCchH-HHHHHHHHHHHhcC--CCEEEeccccCCCCCCCCHHHHHHHHHcCCCccCCcccCCCHHHhccCC
Confidence 56689988844433 34478887776643 44444333321 111111 11112111222222 2456788999
Q ss_pred eEEEeccc
Q 028847 73 GILLGFPT 80 (203)
Q Consensus 73 ~iiigsP~ 80 (203)
.||..+..
T Consensus 84 lIi~m~~~ 91 (150)
T 2wmy_A 84 LLLVMEYS 91 (150)
T ss_dssp EEEESCHH
T ss_pred EEEEcCHH
Confidence 99987764
No 189
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=54.21 E-value=38 Score=23.06 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=41.9
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
...+..+|++|+....-...-...++.|++.+... ...++++.++++--................+...++.++.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 34578899999998776554445566676665421 2357788887774221111011123344455556665544
No 190
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=53.67 E-value=36 Score=22.92 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=31.9
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....+..+|++|+....-...-...++.|+..+... ...++++.++++-
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 117 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 117 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 355678999999988765543334556676665321 2357888888774
No 191
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=53.66 E-value=29 Score=25.54 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=57.4
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchh---Hhhhc----CCCCCCCCCCCChhhhhccCe
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSED---VLGKM----GAGPKSDVPTITPNELAEADG 73 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~---~~~~~----~~~~~~~~~~~~~~~l~~aD~ 73 (203)
|.++.++||++ .|.|..|.+.+.....+ +..+-++... .+..+ +.... .+.+.+.... ..+...++|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d-~~~~~~~~Dv 94 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRD-VAQEALGVAV 94 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGG-GHHHHHTCSE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc-cCccchhhhhhccCCcccceecCCHHH-HHHhccCCCE
Confidence 56899999998 79998899998876654 5567666532 11111 11100 0000000001 1334567888
Q ss_pred EEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 74 ILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
|+|==--++ +. .-.|++.+. -.||++.+.+--
T Consensus 95 IlIDEaQFf---k~-~ve~~~~L~-------~~gk~VI~~GL~ 126 (195)
T 1w4r_A 95 IGIDEGQFF---PD-IVEFCEAMA-------NAGKTVIVAALD 126 (195)
T ss_dssp EEESSGGGC---TT-HHHHHHHHH-------HTTCEEEEEEES
T ss_pred EEEEchhhh---HH-HHHHHHHHH-------HCCCeEEEEecc
Confidence 888765555 23 555666663 358988887754
No 192
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=53.39 E-value=26 Score=28.06 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=21.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+||+|+.+.. ++..++..+++ .|+++.+++...
T Consensus 1 M~~Ililg~g~------~g~~~~~a~~~-~G~~v~~~~~~~ 34 (380)
T 3ax6_A 1 MKKIGIIGGGQ------LGKMMTLEAKK-MGFYVIVLDPTP 34 (380)
T ss_dssp CCEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESST
T ss_pred CCEEEEECCCH------HHHHHHHHHHH-CCCEEEEEeCCC
Confidence 46899887532 34445555655 388888887654
No 193
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=53.36 E-value=29 Score=27.04 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.3
Q ss_pred hhhhhccCeEEEecccCC
Q 028847 65 PNELAEADGILLGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+..+|.||+++|.+.
T Consensus 64 ~~~~~~~D~vilavk~~~ 81 (312)
T 3hn2_A 64 PEEIGPMDLVLVGLKTFA 81 (312)
T ss_dssp HHHHCCCSEEEECCCGGG
T ss_pred HHHcCCCCEEEEecCCCC
Confidence 456778999999999985
No 194
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=52.69 E-value=52 Score=23.77 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=29.7
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....+..+|++|+..-.-...-...++.|++.+... ...++++.++++-
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK 127 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN----ADDNVAVGLIGNK 127 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH----CC--CEEEEEECC
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 345678999999987765544445566677666321 2357788877763
No 195
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=52.46 E-value=16 Score=26.22 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=48.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhh--hcCCCCCCCCCCCChhhh--hccCeEEEec
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG--KMGAGPKSDVPTITPNEL--AEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l--~~aD~iiigs 78 (203)
+||+|+.+. |....=+....+.++. .|++++++............ ..+..- .+....+++ .++|.|||..
T Consensus 10 ~~v~il~~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~g~~v---~~~~~~~~~~~~~~D~livpG 83 (190)
T 2vrn_A 10 KKIAILAAD--GVEEIELTSPRAAIEA-AGGTTELISLEPGEIQSMKGDIEPQEKY---RVDHVVSEVQVSDYDGLLLPG 83 (190)
T ss_dssp CEEEEECCT--TCBHHHHHHHHHHHHH-TTCEEEEEESSSSEEEEEETTTEEEEEE---ECSEEGGGCCGGGCSEEEECC
T ss_pred CEEEEEeCC--CCCHHHHHHHHHHHHH-CCCEEEEEecCCCccccccccccCCcEE---eCCCChhhCChhhCCEEEECC
Confidence 588887653 3222222234455655 37888888765422110000 000000 011112333 5799999875
Q ss_pred cc---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 79 PT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 79 P~---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.. +...-.+.+..|+.+.. -.||+++.++++
T Consensus 84 G~~~~~~~~~~~~l~~~l~~~~-------~~gk~i~aiC~G 117 (190)
T 2vrn_A 84 GTVNPDKLRLEEGAMKFVRDMY-------DAGKPIAAICHG 117 (190)
T ss_dssp CTHHHHHHTTCHHHHHHHHHHH-------HTTCCEEEC-CT
T ss_pred CchhHHHHhhCHHHHHHHHHHH-------HcCCEEEEECHh
Confidence 42 11122456777777653 257777777664
No 196
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=51.92 E-value=14 Score=28.90 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=27.7
Q ss_pred eEEEEEec--CcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYS--MYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S--~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+++..+ +.|-.+..+..+++.+.+. |.+|.++-..
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAAR-GHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHT-TCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhC-CCeEEEEecC
Confidence 89988654 4566777777888888874 8899988664
No 197
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=51.09 E-value=24 Score=26.81 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=25.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|+.||-|...|--+.+|+.+++ .|+.|-+.+..+
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~-----~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLE-----AGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 478888888888866666666554 488888888754
No 198
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=51.00 E-value=52 Score=27.90 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=49.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhh------hcCCCCCCCCCCCChhhhhccCeEE-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG------KMGAGPKSDVPTITPNELAEADGIL- 75 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~aD~ii- 75 (203)
++|+|+.|+. |+--=+=.++..|.. .|.+|+++-+.+....++.. .+.....+ ......+..+|.||
T Consensus 53 ~~v~VlcG~G--NNGGDGlv~AR~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~dliVD 126 (502)
T 3rss_A 53 YRFLVLCGGG--NNGGDGFVVARNLLG-VVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVE---QFEPSILNEFDVVVD 126 (502)
T ss_dssp CEEEEEECSS--HHHHHHHHHHHHHTT-TSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEES---CCCGGGGGGCSEEEE
T ss_pred CEEEEEECCC--CCHHHHHHHHHHHHH-CCCeEEEEEECCCCCHHHHHHHHHHHhCCCceec---ccccccCCCCCEEEE
Confidence 3788998883 333222233444544 38899988776542222211 11111000 00123466788887
Q ss_pred --EecccCCCCcHHHHHHHHHHhc
Q 028847 76 --LGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 76 --igsP~y~~~~~~~lk~fld~~~ 97 (203)
||+-. .+.+.+.++.++++++
T Consensus 127 alfG~Gl-~~~l~~~~~~~i~~iN 149 (502)
T 3rss_A 127 AIFGTGL-RGEITGEYAEIINLVN 149 (502)
T ss_dssp ESCSTTC-CSCCCHHHHHHHHHHH
T ss_pred eCccCCC-CCCCcHHHHHHHHHHH
Confidence 56655 6788999999999985
No 199
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=50.89 E-value=4.6 Score=31.51 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=12.1
Q ss_pred hccCeEEEecccC
Q 028847 69 AEADGILLGFPTR 81 (203)
Q Consensus 69 ~~aD~iiigsP~y 81 (203)
..+|.||+++|.+
T Consensus 61 ~~~D~vilavk~~ 73 (294)
T 3g17_A 61 NTFDVIIIAVKTH 73 (294)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCCCEEEEeCCcc
Confidence 6899999999998
No 200
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=50.82 E-value=58 Score=23.49 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCceEEEEEecC-----------cch--HHHHHHHHHHHhh--ccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCCh
Q 028847 1 MATKVYIVYYSM-----------YGH--VEKLAEEIQKGAA--SVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITP 65 (203)
Q Consensus 1 mm~kilIiy~S~-----------~G~--T~~la~~i~~~l~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
|| ||+||+|-. +|+ -+.+-+.+.+... + .|++++++.-+.. ..+++. ..
T Consensus 9 ~M-~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~~-~g~~l~~~QSN~E--GeLId~------------Ih 72 (176)
T 2c4w_A 9 HM-KILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGN-LDVELEFFQTNFE--GEIIDK------------IQ 72 (176)
T ss_dssp CE-EEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTT-CCEEEEEEECSCH--HHHHHH------------HH
T ss_pred cc-EEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhcccc-CCCEEEEEeeCcH--HHHHHH------------HH
Confidence 45 899999874 353 3445556666666 5 4778877765431 111211 12
Q ss_pred hhhhc-cCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAE-ADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~-aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
+...+ +|+|||=---|- +-|-.++..|..+.
T Consensus 73 ~a~~~~~dgIIINpgAyT-HtSvAlrDAl~~v~ 104 (176)
T 2c4w_A 73 ESVGSEYEGIIINPGAFS-HTSIAIADAIMLAG 104 (176)
T ss_dssp HHHSSSCCEEEEECGGGG-GTCHHHHHHHHTSS
T ss_pred HhccCCeeEEEECcchhc-cchHHHHHHHHhCC
Confidence 33445 888888766653 33344566665553
No 201
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=50.75 E-value=71 Score=24.92 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=56.4
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCC-hhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTIT-PNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~iiigsP~ 80 (203)
+||.|| |.. -| ..+|..++ + .|.+|.++|......+...+. +. ..... .+.+.++|.||+..|.
T Consensus 32 ~~I~iI-G~G~mG--~~~a~~l~----~-~G~~V~~~dr~~~~~~~l~~~-g~-----~~~~~~~e~~~~aDvVi~~vp~ 97 (320)
T 4dll_A 32 RKITFL-GTGSMG--LPMARRLC----E-AGYALQVWNRTPARAASLAAL-GA-----TIHEQARAAARDADIVVSMLEN 97 (320)
T ss_dssp SEEEEE-CCTTTH--HHHHHHHH----H-TTCEEEEECSCHHHHHHHHTT-TC-----EEESSHHHHHTTCSEEEECCSS
T ss_pred CEEEEE-CccHHH--HHHHHHHH----h-CCCeEEEEcCCHHHHHHHHHC-CC-----EeeCCHHHHHhcCCEEEEECCC
Confidence 478877 442 23 33444443 3 377888877653221111110 00 00011 3456789999999985
Q ss_pred CCCCcHHHHHHHHH--HhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 81 RFGMMAAQFKAFLD--ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 81 y~~~~~~~lk~fld--~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+. .+.. ...+|+.+ +.++.. . ......+...+...|..+++.++
T Consensus 98 -----~~~~~~v~~~~~~~~----~l~~~~~v--i~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 150 (320)
T 4dll_A 98 -----GAVVQDVLFAQGVAA----AMKPGSLF--LDMASI---T-PREARDHAARLGALGIAHLDTPV 150 (320)
T ss_dssp -----HHHHHHHHTTTCHHH----HCCTTCEE--EECSCC---C-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred -----HHHHHHHHcchhHHh----hCCCCCEE--EecCCC---C-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 344555553 2210 11234332 222221 1 12244566677778888887654
No 202
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=50.41 E-value=24 Score=27.53 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=25.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|||+++..+..| ....+..+++.+.+ .|.+|.++-...
T Consensus 7 mkIl~~~~~~gG-~~~~~~~la~~L~~-~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAGGTGG-HVFPGLAVAHHLMA-QGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECCSSHH-HHHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred cEEEEEeCCCcc-chhHHHHHHHHHHH-cCCEEEEEecCC
Confidence 589988644334 44455567777776 488999886654
No 203
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=50.37 E-value=65 Score=22.86 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=38.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC---CCchh-HhhhcCCC---CCCCCCC-CChhhhhccC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE---TLSED-VLGKMGAG---PKSDVPT-ITPNELAEAD 72 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~---~~~~~-~~~~~~~~---~~~~~~~-~~~~~l~~aD 72 (203)
||+|||.|+..... -..||+.+.+.+.. +++|..-=+.. ..+++ ....+... .....+. .....+.++|
T Consensus 25 mm~~VLFVCtgNic-RSpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l~~~~~~~~D 101 (168)
T 2wja_A 25 MFDSILVICTGNIC-RSPIGERLLRRLLP--SKKINSAGVGALVDHAADESAIRVAEKNGLCLKGHRGTKFTSALARQYD 101 (168)
T ss_dssp HCSEEEEEESSSSS-HHHHHHHHHHHHST--TSEEEEEETTCCTTCCCCHHHHHC---CCCCCTTCCCCBCCHHHHTTCS
T ss_pred ccCEEEEEcCCcHH-HHHHHHHHHHHhcC--CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCcccCccCCCChhHhccCC
Confidence 56789988844433 34478888776643 44444333321 11221 11212111 1112222 2456788999
Q ss_pred eEEEeccc
Q 028847 73 GILLGFPT 80 (203)
Q Consensus 73 ~iiigsP~ 80 (203)
.||..+..
T Consensus 102 lIitM~~~ 109 (168)
T 2wja_A 102 LLLVMEYS 109 (168)
T ss_dssp EEEESSHH
T ss_pred EEEEcCHH
Confidence 99987654
No 204
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=50.33 E-value=22 Score=25.32 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.3
Q ss_pred hhhccCeEEEec
Q 028847 67 ELAEADGILLGF 78 (203)
Q Consensus 67 ~l~~aD~iiigs 78 (203)
.+.++|+|||.-
T Consensus 34 ~~~~~dglil~G 45 (186)
T 2ywj_A 34 DLEGIDALIIPG 45 (186)
T ss_dssp GGTTCSEEEECC
T ss_pred HhccCCEEEECC
Confidence 567789999864
No 205
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=50.20 E-value=46 Score=26.29 Aligned_cols=38 Identities=8% Similarity=-0.097 Sum_probs=25.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+|++||+-...|+. +..+.+.+.+++ .|+++++....
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~-~g~~~~~~~t~ 66 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLRE-EGMTIHVRVTW 66 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHT-TTCCEEEEECC
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHH-cCCcEEEEEec
Confidence 568888876555544 556778888887 48888776544
No 206
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=50.07 E-value=90 Score=24.39 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.3
Q ss_pred hhhccCeEEEecccC
Q 028847 67 ELAEADGILLGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
.+.++|.||++.|..
T Consensus 91 ~~~~aDvVilavp~~ 105 (314)
T 3ggo_A 91 EDFSPDFVMLSSPVR 105 (314)
T ss_dssp GGGCCSEEEECSCGG
T ss_pred hhccCCEEEEeCCHH
Confidence 478999999999985
No 207
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=49.91 E-value=41 Score=22.97 Aligned_cols=51 Identities=14% Similarity=-0.046 Sum_probs=31.0
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...-...++.|++.+..........+.++.++++-
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 356789999998766554433455666665532111112367888888874
No 208
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=48.50 E-value=19 Score=28.68 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=20.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||||+|+-+... ...++..+++ .|+++.++|-..
T Consensus 1 MK~I~ilGgg~~------g~~~~~~Ak~-~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKLQ------GFEAAYLSKK-AGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSHH------HHHHHHHHHH-TTCEEEEEESCT
T ss_pred CCEEEEECCCHH------HHHHHHHHHH-CCCEEEEEeCCC
Confidence 578888754422 2333444455 388998887654
No 209
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=47.70 E-value=30 Score=27.08 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=11.7
Q ss_pred hccCeEEEecccCC
Q 028847 69 AEADGILLGFPTRF 82 (203)
Q Consensus 69 ~~aD~iiigsP~y~ 82 (203)
.+.|+|++++|...
T Consensus 62 ~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 62 YGVDAVMIHAATDV 75 (323)
T ss_dssp GCCSEEEECSCGGG
T ss_pred cCCCEEEEECCchh
Confidence 57999999999643
No 210
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=47.68 E-value=89 Score=23.66 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=54.6
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||||.|| |.. -| ..++..+. + .|.+|.+++ .....+..... +.. ......+.+.++|.||+.+|.
T Consensus 3 ~m~i~ii-G~G~~G--~~~a~~l~----~-~g~~V~~~~-~~~~~~~~~~~-g~~----~~~~~~~~~~~~D~vi~~vp~ 68 (295)
T 1yb4_A 3 AMKLGFI-GLGIMG--SPMAINLA----R-AGHQLHVTT-IGPVADELLSL-GAV----NVETARQVTEFADIIFIMVPD 68 (295)
T ss_dssp -CEEEEC-CCSTTH--HHHHHHHH----H-TTCEEEECC-SSCCCHHHHTT-TCB----CCSSHHHHHHTCSEEEECCSS
T ss_pred CCEEEEE-ccCHHH--HHHHHHHH----h-CCCEEEEEc-CHHHHHHHHHc-CCc----ccCCHHHHHhcCCEEEEECCC
Confidence 3488876 331 22 33444443 3 367887777 54333322211 100 000112346789999999986
Q ss_pred CCCCcHHHHHHHHH---HhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 81 RFGMMAAQFKAFLD---ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~lk~fld---~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
+..++..+. .+. ..++.... ++..+.+ .......+.+.+...|..+++.+
T Consensus 69 -----~~~~~~v~~~~~~l~-----~~l~~~~~-vv~~s~~----~~~~~~~l~~~~~~~g~~~~~~p 121 (295)
T 1yb4_A 69 -----TPQVEDVLFGEHGCA-----KTSLQGKT-IVDMSSI----SPIETKRFAQRVNEMGADYLDAP 121 (295)
T ss_dssp -----HHHHHHHHHSTTSST-----TSCCTTEE-EEECSCC----CHHHHHHHHHHHHTTTEEEEECC
T ss_pred -----HHHHHHHHhCchhHh-----hcCCCCCE-EEECCCC----CHHHHHHHHHHHHHcCCeEEEcc
Confidence 334666665 332 12322222 2222221 11123445566666677776544
No 211
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=47.05 E-value=48 Score=22.70 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=42.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
.+++|+.++. ..+.+++.+...+... ..+..+++.... ++....... ...+++.. |.|||-+=.|
T Consensus 6 i~iiivsHG~--~A~gl~~~~~~i~G~~--~~i~ai~~~~~~~~~~~~~~i~---------~~i~~~~~-~gvliLtDl~ 71 (142)
T 3bed_A 6 PKLILMSHGR--MAEETLASTQMIVGEL--ADAAIVSMTAEDGLSGTQAKLA---------AILKEAGN-VPTLVLADLX 71 (142)
T ss_dssp SEEEEEEETT--HHHHHHHHHHHHHCTT--CCCEEEEECTTTHHHHHHHHHH---------HHHHHHCS-CCEEEEESST
T ss_pred ccEEEEcChH--HHHHHHHHHHHHcCCC--CCEEEEEecCCCCHHHHHHHHH---------HHHHhcCC-CCEEEEEECC
Confidence 5777776653 4455666655555431 357778876432 222221100 01345556 8999999998
Q ss_pred CCCcHHHH
Q 028847 82 FGMMAAQF 89 (203)
Q Consensus 82 ~~~~~~~l 89 (203)
.|++.-..
T Consensus 72 GGSp~n~a 79 (142)
T 3bed_A 72 GGTPCNVA 79 (142)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHH
Confidence 88876653
No 212
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=47.04 E-value=23 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.0
Q ss_pred eEEEEEec--C---cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYS--M---YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S--~---~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||++|..+ + .|-.+..+..+++.+.+. |++|.++-..
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~-G~~V~vi~~~ 43 (485)
T 1rzu_A 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAH-GVRTRTLIPG 43 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHTT-TCEEEEEEEC
T ss_pred eEEEEeeeeccccccccHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 89988653 2 477888888889999884 8999998654
No 213
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=46.99 E-value=21 Score=28.11 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=13.3
Q ss_pred hhhhhccCeEEEeccc
Q 028847 65 PNELAEADGILLGFPT 80 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~ 80 (203)
.+.+.++|.||+..++
T Consensus 65 ~~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 65 YADTANSDVIVVTSGA 80 (309)
T ss_dssp GGGGTTCSEEEECCCC
T ss_pred HHHHCCCCEEEEcCCC
Confidence 4679999999999754
No 214
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=46.97 E-value=17 Score=29.83 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.5
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHhhcc-CCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYG--HVEKLAEEIQKGAASV-EGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G--~T~~la~~i~~~l~~~-~g~~v~~~~l~~ 42 (203)
|||+|--.|-.| +...++++|++++++. +++++..+.+.|
T Consensus 4 MkiviApDsFKgsLsA~eaa~ai~~G~~~~~p~a~~~~~P~AD 46 (383)
T 3cwc_A 4 MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLAD 46 (383)
T ss_dssp CEEEECCCCBTTSCCHHHHHHHHHHHHHTTCTTSEEEECCCCC
T ss_pred ceEEEEecCCCCCcCHHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 489998888654 4788999999999875 555665555554
No 215
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=46.96 E-value=22 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=28.9
Q ss_pred eEEEEEec--C---cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYS--M---YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S--~---~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||++|..+ + .|-.+..+..+++.|.+. |++|.++-..
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~-G~~V~vi~~~ 43 (485)
T 2qzs_A 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIAD-GVDARVLLPA 43 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred eEEEEeeeccccccCCcHHHHHHHHHHHHHHc-CCEEEEEecC
Confidence 89998754 2 477788888888988874 8999998654
No 216
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=46.81 E-value=73 Score=22.44 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=45.4
Q ss_pred CceEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhh
Q 028847 2 ATKVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL 68 (203)
Q Consensus 2 m~kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (203)
|+||+|++|-. +|+ -+.+-+.+.+...+ .|++++.+.-+.. ..+++. ..+..
T Consensus 1 ~~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~l~~~QSN~E--GeLId~------------Ih~a~ 65 (154)
T 1uqr_A 1 MKKILLLNGPNLNMLGKREPHIYGSQTLSDIEQHLQQSAQA-QGYELDYFQANGE--ESLINR------------IHQAF 65 (154)
T ss_dssp CCEEEEEECTTGGGTTCSSGGGTTCCCHHHHHHHHHHHHHH-TTCEEEEEECSSH--HHHHHH------------HHHTT
T ss_pred CCEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeeCCH--HHHHHH------------HHHhh
Confidence 46899999874 343 34556666666666 4888888765432 111211 12233
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
.++|+|||=---|- .-|-.++..+..+.
T Consensus 66 ~~~dgiIINpgA~T-HtSvAlrDAl~~v~ 93 (154)
T 1uqr_A 66 QNTDFIIINPGAFT-HTSVAIRDALLAVS 93 (154)
T ss_dssp TTCCEEEEECTTHH-HHCHHHHHHHHHHT
T ss_pred hcCcEEEECcchhc-cchHHHHHHHHhCC
Confidence 46888888655542 23334555555553
No 217
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=46.62 E-value=66 Score=21.88 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=41.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
...+..+|++|+..-.-...-...++.|+..+... ...+.++.++++--....................++.++.
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ----GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFME 153 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEE
Confidence 44678899999987765433335566777666421 2357788887774221111111123344455556766554
No 218
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=46.44 E-value=23 Score=25.30 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=27.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|.++|.|+.. .||-.. +.+.+++ .|+++.+++.. +.+.++|+|||.--
T Consensus 1 ~~p~Igi~~~--~~~~~~----~~~~l~~-~G~~~~~~~~~------------------------~~l~~~dglil~GG 48 (191)
T 2ywd_A 1 MRGVVGVLAL--QGDFRE----HKEALKR-LGIEAKEVRKK------------------------EHLEGLKALIVPGG 48 (191)
T ss_dssp --CCEEEECS--SSCHHH----HHHHHHT-TTCCCEEECSG------------------------GGGTTCSEEEECSS
T ss_pred CCcEEEEEec--CCchHH----HHHHHHH-CCCEEEEeCCh------------------------hhhccCCEEEECCC
Confidence 4457777754 244433 4455555 37777765421 24667899999643
No 219
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=46.19 E-value=30 Score=26.59 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.9
Q ss_pred hhhccCeEEEecccC
Q 028847 67 ELAEADGILLGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
.+.++|.||++.|..
T Consensus 82 ~~~~aDlVi~av~~~ 96 (283)
T 4e12_A 82 AVKDADLVIEAVPES 96 (283)
T ss_dssp HTTTCSEEEECCCSC
T ss_pred HhccCCEEEEeccCc
Confidence 478999999999974
No 220
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=46.14 E-value=81 Score=22.75 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=18.5
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHhhcC
Q 028847 176 QPSE-LELAQAFHQGKYFAGITKKLKGS 202 (203)
Q Consensus 176 ~p~~-~~~~~~~~~g~~l~~~~~~~~~~ 202 (203)
.|.. ...++.++++++|.+...++.-|
T Consensus 178 ~p~~~~~~~~~~~l~~el~~~~~~~~~~ 205 (209)
T 3cwq_A 178 DSKAGIAWSDYKATGKEIVEEILTLEHH 205 (209)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555 66777888888888776665543
No 221
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=46.11 E-value=28 Score=27.33 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=37.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCC-ceEEEEEcCCCCc---hhHhhhcCCCCCCCCCC-CChhhhhccCeEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEG-VEAKLWQVPETLS---EDVLGKMGAGPKSDVPT-ITPNELAEADGIL 75 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g-~~v~~~~l~~~~~---~~~~~~~~~~~~~~~~~-~~~~~l~~aD~ii 75 (203)
||+||.|| |. | .+...++..+.+ .| .+|.++|.....+ +...+..... .... ...+.+.++|.||
T Consensus 23 M~m~IgvI-G~--G---~mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~---g~~~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 23 MMTTIAFI-GF--G---EAAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAEL---GVEPLDDVAGIACADVVL 92 (317)
T ss_dssp SCCEEEEE-CC--S---HHHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHT---TCEEESSGGGGGGCSEEE
T ss_pred cCCeEEEE-Cc--c---HHHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHC---CCCCCCHHHHHhcCCEEE
Confidence 55677766 33 3 244455555555 37 7898888764111 0111100000 0001 1234578899999
Q ss_pred EecccC
Q 028847 76 LGFPTR 81 (203)
Q Consensus 76 igsP~y 81 (203)
+..|..
T Consensus 93 ~avp~~ 98 (317)
T 4ezb_A 93 SLVVGA 98 (317)
T ss_dssp ECCCGG
T ss_pred EecCCH
Confidence 999974
No 222
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=46.03 E-value=51 Score=28.72 Aligned_cols=57 Identities=9% Similarity=0.005 Sum_probs=35.8
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEE
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 141 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~ 141 (203)
+.|++|+.+|+|.+.-. .+. .-.+.|+++.+.-+....+.- .+......|.+.|...
T Consensus 84 ~vd~ii~~~~~w~yg~e--------t~~------~~~~~Pvllw~~~~~e~pG~~-gl~a~~~~l~q~Gip~ 140 (595)
T 3a9s_A 84 GVGVSITVTPCWCYGTE--------TMD------MDPHIPKAVWGFNGTERPGAV-YLAAVLAGYNQKGLPA 140 (595)
T ss_dssp TEEEEEEEESSCCCGGG--------TCC------CCTTSCEEEEECCCSSSCHHH-HHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEeccCCCHHH--------HHh------hcCCCCEEEEeCCCCCCcchh-HHHHHHHHHHHcCCce
Confidence 56899999999987611 111 123889998887763333333 2455566777777654
No 223
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=45.96 E-value=16 Score=28.83 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=38.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHh---hhcCCCCCCCCCCCChhhhh---ccCeE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVL---GKMGAGPKSDVPTITPNELA---EADGI 74 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~---~aD~i 74 (203)
||.|+.||-. |+ ++...+..+.+.++.+++++-+.+..++... ....... .+ ...+++. +.|+|
T Consensus 1 M~~rigiiG~---G~---ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~--~~--~~~~~ll~~~~vD~V 70 (334)
T 3ohs_X 1 MALRWGIVSV---GL---ISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPK--AY--GSYEELAKDPNVEVA 70 (334)
T ss_dssp -CEEEEEECC---SH---HHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSC--EE--SSHHHHHHCTTCCEE
T ss_pred CccEEEEECc---hH---HHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCc--cc--CCHHHHhcCCCCCEE
Confidence 6668887652 22 3333444444322334566666554432211 1111100 00 1234443 58999
Q ss_pred EEecccCCCCcHHHHHHHHH
Q 028847 75 LLGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 75 iigsP~y~~~~~~~lk~fld 94 (203)
+|+||.... ....+..++
T Consensus 71 ~i~tp~~~H--~~~~~~al~ 88 (334)
T 3ohs_X 71 YVGTQHPQH--KAAVMLCLA 88 (334)
T ss_dssp EECCCGGGH--HHHHHHHHH
T ss_pred EECCCcHHH--HHHHHHHHh
Confidence 999998643 333444444
No 224
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=45.64 E-value=77 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=32.0
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+... ...+.++.++++-
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK 139 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL----ASPNIVVILCGNK 139 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----TCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 45678999999998776544444566677665321 2357888887773
No 225
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=45.55 E-value=35 Score=21.97 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=20.0
Q ss_pred ceEEEEEec-Ccc-hHHHHHHHHHHHhhccCCc-eEEEEEcCC
Q 028847 3 TKVYIVYYS-MYG-HVEKLAEEIQKGAASVEGV-EAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S-~~G-~T~~la~~i~~~l~~~~g~-~v~~~~l~~ 42 (203)
+|++|+..| +++ .....+=.++..+.+.+|. ++.++-..+
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 478777665 443 2222233333333331266 887776554
No 226
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=45.07 E-value=37 Score=26.76 Aligned_cols=39 Identities=23% Similarity=0.127 Sum_probs=27.7
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||+||++..+. -+-.-+..+.+.|++ .|.++..+++..
T Consensus 4 ~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (343)
T 1e4e_A 4 IKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITK 45 (343)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcC
Confidence 489999986542 233346677888887 489999988754
No 227
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=44.86 E-value=28 Score=20.45 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=20.6
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhhcc-CCceEEEEEcCC
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAASV-EGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~~~-~g~~v~~~~l~~ 42 (203)
|++-.+++++++ -+.++++...+.+..++. .++.+..+|+.+
T Consensus 1 m~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 44 (85)
T 1fo5_A 1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME 44 (85)
T ss_dssp CCCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred CCceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence 533334444444 466666665555443332 145555666543
No 228
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=44.79 E-value=44 Score=24.29 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=26.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+|+-+ .||-..+.+.+.+ .|+++.+++.. +++.++|+|||.-
T Consensus 22 ~I~ii~~--~~~~~~~~~~l~~-----~g~~~~~~~~~------------------------~~l~~~d~iil~G 65 (208)
T 2iss_D 22 KIGVLGV--QGDVREHVEALHK-----LGVETLIVKLP------------------------EQLDMVDGLILPG 65 (208)
T ss_dssp EEEEECS--SSCHHHHHHHHHH-----TTCEEEEECSG------------------------GGGGGCSEEEECS
T ss_pred EEEEEEC--CCchHHHHHHHHH-----CCCEEEEeCCh------------------------HHHhhCCEEEECC
Confidence 7888854 4555445555433 27677665321 2466899999943
No 229
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=44.60 E-value=77 Score=22.03 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=32.4
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....+..+|++|+....-...-...++.|++.+... ...+.++.++++-
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK 135 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNK 135 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 356788999999998775544344556666665321 2357888887774
No 230
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=43.70 E-value=30 Score=22.96 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=26.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|++|||+-+.- +.++...++...+.++. .+.++.++.+.+.
T Consensus 1 M~~~ILv~vD~-s~~s~~al~~A~~la~~-~~a~l~ll~v~~~ 41 (147)
T 3hgm_A 1 MFNRIMVPVDG-SKGAVKALEKGVGLQQL-TGAELYILCVFKH 41 (147)
T ss_dssp CCSEEEEECCS-BHHHHHHHHHHHHHHHH-HCCEEEEEEEECC
T ss_pred CCceEEEEeCC-CHHHHHHHHHHHHHHHh-cCCEEEEEEEecC
Confidence 78888876632 33456666665555554 2678888888653
No 231
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=43.18 E-value=61 Score=21.46 Aligned_cols=34 Identities=6% Similarity=0.037 Sum_probs=21.6
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
+.||+.+. +.+++.-+.+.+ .|++++.+|+.+..
T Consensus 5 i~iY~~~~C~~c~ka~~~L~~-----~gi~~~~~di~~~~ 39 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAELDD-----LAWDYDAIDIKKNP 39 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-----HTCCEEEEETTTSC
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCceEEEEeccCc
Confidence 34677764 556654444433 38899999997654
No 232
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=43.00 E-value=51 Score=25.96 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec-ccCCCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF-PTRFGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs-P~y~~~~~~~lk~ 91 (203)
+|.+-..+...++.|++ .|+++.++++....|=+.- ...+.+.+++.+|+.= ....+++-..+..
T Consensus 209 ~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~~-------------~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~ 274 (324)
T 1w85_B 209 YGAMVHESLKAAAELEK-EGISAEVVDLRTVQPLDIE-------------TIIGSVEKTGRAIVVQEAQRQAGIAANVVA 274 (324)
T ss_dssp CTTHHHHHHHHHHHHHH-TTCCEEEEECSEEESCCHH-------------HHHHHHHHHSCEEEEEEEETTSSSHHHHHH
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEEeeeecCCCHH-------------HHHHHHhhCCcEEEEeCCCcCChHHHHHHH
Confidence 45566667777777777 4899999999865331100 0123455666655553 3336778777777
Q ss_pred HHHHh
Q 028847 92 FLDAT 96 (203)
Q Consensus 92 fld~~ 96 (203)
++...
T Consensus 275 ~l~~~ 279 (324)
T 1w85_B 275 EINER 279 (324)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77543
No 233
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=42.95 E-value=60 Score=25.18 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=56.0
Q ss_pred CCceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 1 MATKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 1 mm~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|.+||-+|= |.+ | ..||..+.+ .|.+|..+|......+...+ .+... .....+.+..+|.||+..|
T Consensus 4 Ms~kIgfIGLG~M-G--~~mA~~L~~-----~G~~V~v~dr~~~~~~~l~~-~G~~~----~~s~~e~~~~~dvvi~~l~ 70 (297)
T 4gbj_A 4 MSEKIAFLGLGNL-G--TPIAEILLE-----AGYELVVWNRTASKAEPLTK-LGATV----VENAIDAITPGGIVFSVLA 70 (297)
T ss_dssp CCCEEEEECCSTT-H--HHHHHHHHH-----TTCEEEEC-------CTTTT-TTCEE----CSSGGGGCCTTCEEEECCS
T ss_pred CCCcEEEEecHHH-H--HHHHHHHHH-----CCCeEEEEeCCHHHHHHHHH-cCCeE----eCCHHHHHhcCCceeeecc
Confidence 555777763 222 2 345555543 38899888876432221111 00000 0011345678999999888
Q ss_pred cCCCCcHHHHHHHH-HHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 80 TRFGMMAAQFKAFL-DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 80 ~y~~~~~~~lk~fl-d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
. +..+...+ ..+.. ..-+|+. .+-.+... ..+.+.+.+.+...|..++..+++
T Consensus 71 ~-----~~~~~~v~~~~~~~----~~~~~~i-iid~sT~~-----p~~~~~~~~~~~~~g~~~ldapVs 124 (297)
T 4gbj_A 71 D-----DAAVEELFSMELVE----KLGKDGV-HVSMSTIS-----PETSRQLAQVHEWYGAHYVGAPIF 124 (297)
T ss_dssp S-----HHHHHHHSCHHHHH----HHCTTCE-EEECSCCC-----HHHHHHHHHHHHHTTCEEEECCEE
T ss_pred c-----hhhHHHHHHHHHHh----hcCCCeE-EEECCCCC-----hHHHHHHHHHHHhcCCceecCCcC
Confidence 6 33333322 11110 1123332 22222211 122466778888999999988765
No 234
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=42.87 E-value=19 Score=27.93 Aligned_cols=36 Identities=14% Similarity=-0.094 Sum_probs=22.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|+|++||+-...+....+++.+.+.+++. |+++.+.
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~-g~~v~~~ 40 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQ-GYEVIVE 40 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHT-TCEEEEE
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHC-CCEEEEe
Confidence 46898887544566677888888888884 8877654
No 235
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=42.70 E-value=23 Score=27.19 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=16.1
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHH
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFL 93 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fl 93 (203)
+.+.++|.||+++|. +..++..+
T Consensus 57 ~~~~~~D~vi~~v~~-----~~~~~~~~ 79 (299)
T 1vpd_A 57 AIAEQCDVIITMLPN-----SPHVKEVA 79 (299)
T ss_dssp HHHHHCSEEEECCSS-----HHHHHHHH
T ss_pred HHHhCCCEEEEECCC-----HHHHHHHH
Confidence 346789999999984 23455555
No 236
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=42.69 E-value=80 Score=21.72 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=36.5
Q ss_pred hhhhhccCeEEEecccCCCCcH------HHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcC
Q 028847 65 PNELAEADGILLGFPTRFGMMA------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 138 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~------~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g 138 (203)
...+..+|++|+..-.-..... ..+..|+..+. ....+.++.++++----..... ...+.+.+...+
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~ 164 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDALP--VEMVRAVVDPEG 164 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTCCC--HHHHHHHHCTTC
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccccC--HHHHHHHHHhcC
Confidence 3457889999998776532111 22333444432 2457889988887432111111 334445555555
Q ss_pred c
Q 028847 139 M 139 (203)
Q Consensus 139 ~ 139 (203)
+
T Consensus 165 ~ 165 (198)
T 3t1o_A 165 K 165 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 237
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=42.65 E-value=1.1e+02 Score=23.23 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=58.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|||.|| |. |+ |...++..+.+ .|.+|.++|......+...+. .... .....+.+.++|.||+..|.
T Consensus 2 ~~i~iI-G~--G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~~~~~~~aDvvi~~vp~-- 67 (287)
T 3pef_A 2 QKFGFI-GL--GI---MGSAMAKNLVK-AGCSVTIWNRSPEKAEELAAL-GAER----AATPCEVVESCPVTFAMLAD-- 67 (287)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHT-TCEE----CSSHHHHHHHCSEEEECCSS--
T ss_pred CEEEEE-ee--cH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHC-CCee----cCCHHHHHhcCCEEEEEcCC--
Confidence 377766 33 32 34444444444 377888887654333322211 0000 00013456789999999985
Q ss_pred CCcHHHHHHHH---HHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 83 GMMAAQFKAFL---DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 83 ~~~~~~lk~fl---d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
+..++..+ +.+.. ..-+|+.+ +.+++. . ..+...+.+.+...|..+++.++
T Consensus 68 ---~~~~~~v~~~~~~l~~----~l~~~~~v--i~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 121 (287)
T 3pef_A 68 ---PAAAEEVCFGKHGVLE----GIGEGRGY--VDMSTV---D-PATSQRIGVAVVAKGGRFLEAPV 121 (287)
T ss_dssp ---HHHHHHHHHSTTCHHH----HCCTTCEE--EECSCC---C-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred ---HHHHHHHHcCcchHhh----cCCCCCEE--EeCCCC---C-HHHHHHHHHHHHHhCCEEEECCC
Confidence 23455555 33321 01234432 223221 1 12245566777777888876553
No 238
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=42.62 E-value=1e+02 Score=23.01 Aligned_cols=47 Identities=6% Similarity=-0.065 Sum_probs=27.1
Q ss_pred hhhhccCeEEEecccCCCCc--HHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 66 NELAEADGILLGFPTRFGMM--AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~--~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
..+...|.||..++...... -...+++++... ...-+++..+++++.
T Consensus 61 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~------~~gv~~iv~~Ss~~~ 109 (289)
T 3e48_A 61 EAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAK------QSGVAHIIFIGYYAD 109 (289)
T ss_dssp HHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHH------HTTCCEEEEEEESCC
T ss_pred HHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHH------HcCCCEEEEEcccCC
Confidence 35678899999877543321 134567777663 112256666666543
No 239
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=42.59 E-value=19 Score=27.68 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=19.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|||||+|.=+| -.+...+.+.|.+ .|.+|..++-.
T Consensus 1 M~~~vlVtGat-----G~iG~~l~~~L~~-~g~~V~~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGT-----GFLGQYVVESIKN-DGNTPIILTRS 35 (311)
T ss_dssp -CCEEEEETTT-----SHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred CCCEEEEECCC-----cHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 77777764333 2344555555544 37777776654
No 240
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=42.44 E-value=29 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=23.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+||+|+.+. .++..+++.+++. |+++..++...
T Consensus 1 M~~Ililg~g------~~~~~~~~a~~~~-G~~v~~~~~~~ 34 (365)
T 2z04_A 1 MLTVGILGGG------QLGWMTILEGRKL-GFKFHVLEDKE 34 (365)
T ss_dssp -CEEEEECCS------HHHHHHHHHHGGG-TCEEEEECSSS
T ss_pred CCEEEEECCC------HHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 4689998644 3466677777774 88888887654
No 241
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=42.38 E-value=40 Score=23.80 Aligned_cols=52 Identities=12% Similarity=-0.057 Sum_probs=30.2
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+..........++++.++++-
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 3467889999998876543333345556555431111112357788888774
No 242
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=42.24 E-value=88 Score=22.07 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.1
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCC-c---eEEEEEcCCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEG-V---EAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g-~---~v~~~~l~~~ 43 (203)
|+.||....+. -|..|.+-..+.+.+. | + +++++.++-.
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~-G~v~~~~i~v~~VPGa 57 (156)
T 3nq4_A 14 RVAITIARFNQFINDSLLDGAVDALTRI-GQVKDDNITVVWVPGA 57 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHT-TCCCTTSEEEEEESST
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHc-CCCcccceEEEEcCcH
Confidence 78888877654 4888999888888874 7 4 6888888764
No 243
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=42.08 E-value=58 Score=24.73 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.6
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
..+.++|.|||.||. .++.|++.+.
T Consensus 62 ~~l~~~d~vifTS~n-------aV~~~~~~l~ 86 (269)
T 3re1_A 62 FELLNYSAVIVVSKP-------AARLAIELID 86 (269)
T ss_dssp HTGGGSSEEEECSHH-------HHHHHHHHHH
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHH
Confidence 357889999999985 4666666653
No 244
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=41.74 E-value=42 Score=22.14 Aligned_cols=39 Identities=5% Similarity=0.168 Sum_probs=21.3
Q ss_pred CceEEEEE-ecCcchH--HHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVY-YSMYGHV--EKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy-~S~~G~T--~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|++++. .||+|+. +.-.+.+ ..+.. .+.++.++-+.+
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a-~a~~a-~~~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDAL-LATSA-LTDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHH-HHHHT-TCSCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHH-HHHHh-CCCCEEEEEehH
Confidence 46777665 5567753 3333333 33322 255787776655
No 245
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=41.67 E-value=85 Score=21.73 Aligned_cols=48 Identities=17% Similarity=-0.027 Sum_probs=30.8
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...++++.++++-
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK 139 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGNK 139 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEEC
Confidence 44578999999987765543334456677666421 2357788877763
No 246
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=41.60 E-value=30 Score=26.62 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=34.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCc---eEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGV---EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~---~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
+||.|| |. |+ |...++..+.+. |. +|.++|......+......+... .....+.+.++|.||++.|
T Consensus 4 ~~I~iI-G~--G~---mG~aia~~l~~~-g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~ 72 (280)
T 3tri_A 4 SNITFI-GG--GN---MARNIVVGLIAN-GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVK 72 (280)
T ss_dssp SCEEEE-SC--SH---HHHHHHHHHHHT-TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSC
T ss_pred CEEEEE-cc--cH---HHHHHHHHHHHC-CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeC
Confidence 577766 33 32 444555555442 55 67777655422222211101000 0001356789999999998
Q ss_pred c
Q 028847 80 T 80 (203)
Q Consensus 80 ~ 80 (203)
.
T Consensus 73 p 73 (280)
T 3tri_A 73 P 73 (280)
T ss_dssp G
T ss_pred H
Confidence 6
No 247
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=41.58 E-value=34 Score=24.66 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=29.5
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+..-.-...-...++.|+..+.. ...++++.++++
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~n 127 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCENIPIVLCGN 127 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH-----HSTTCCEEEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 4567889999998877654444455667766642 123566666655
No 248
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=41.20 E-value=17 Score=27.36 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=33.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||.|| |. | .+...++..+.+. |.+|.+++................... ...+.+.++|.||+++|..
T Consensus 4 m~i~ii-G~--G---~mG~~~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~D~Vi~~v~~~ 71 (259)
T 2ahr_A 4 MKIGII-GV--G---KMASAIIKGLKQT-PHELIISGSSLERSKEIAEQLALPYAM----SHQDLIDQVDLVILGIKPQ 71 (259)
T ss_dssp CEEEEE-CC--S---HHHHHHHHHHTTS-SCEEEEECSSHHHHHHHHHHHTCCBCS----SHHHHHHTCSEEEECSCGG
T ss_pred cEEEEE-CC--C---HHHHHHHHHHHhC-CCeEEEECCCHHHHHHHHHHcCCEeeC----CHHHHHhcCCEEEEEeCcH
Confidence 488776 32 3 2444555555553 667766654322111111111111000 0123467899999999954
No 249
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=41.20 E-value=61 Score=22.87 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=31.5
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....+..+|++|+....-...-...++.|+..+... ...++++.++++-
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 134 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 134 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----TTTCSEEEEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 355678999999988765443334456666665321 2246788887774
No 250
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=40.93 E-value=76 Score=21.23 Aligned_cols=46 Identities=9% Similarity=-0.006 Sum_probs=29.2
Q ss_pred hhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 67 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+..+|++|+....-...-...++.|+..+... ...+.++.++++-
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK 120 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKM----LGNEICLCIVGNK 120 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----HGGGSEEEEEEEC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEEC
Confidence 467899999988765544334566666665321 1246778777763
No 251
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=40.90 E-value=34 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 20 AEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 20 a~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|..+.+.|+. .+.+|+.+...+. .. ..|. ..++|.++|.||+.-.-
T Consensus 35 ~~~~~~aL~~-~~~~V~~i~~~~~-----~~--------~fP~-~~~~L~~yDvIIl~d~~ 80 (248)
T 3soz_A 35 ADYLLSCLRQ-GNIDVDYMPAHIV-----QT--------RFPQ-TAEALACYDAIVISDIG 80 (248)
T ss_dssp SHHHHHHHTT-TTCEEEEEETTHH-----HH--------SCCC-SHHHHHTCSEEEEESCC
T ss_pred HHHHHHHHhc-CCceeEEeCchhh-----hh--------hCCC-ChHHHhcCCEEEEcCCC
Confidence 5567777777 4889998876432 10 1111 35789999999999443
No 252
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Probab=40.81 E-value=9.1 Score=29.46 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=10.0
Q ss_pred hhccCeEEEecccCC
Q 028847 68 LAEADGILLGFPTRF 82 (203)
Q Consensus 68 l~~aD~iiigsP~y~ 82 (203)
+.++|.||+++|...
T Consensus 56 ~~~~DvVilav~~~~ 70 (276)
T 2i76_A 56 PELNGVVFVIVPDRY 70 (276)
T ss_dssp CC---CEEECSCTTT
T ss_pred HhcCCEEEEeCChHH
Confidence 567999999999864
No 253
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=40.73 E-value=1.3e+02 Score=23.41 Aligned_cols=121 Identities=12% Similarity=0.222 Sum_probs=64.7
Q ss_pred CceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||-+|= |.+ | ..||..+.+ .|.++.++|......+.+.+ .+.... ....+.+..+|.||+.-|.
T Consensus 3 M~kIgfIGlG~M-G--~~mA~~L~~-----~G~~v~v~dr~~~~~~~l~~-~Ga~~a----~s~~e~~~~~dvv~~~l~~ 69 (300)
T 3obb_A 3 MKQIAFIGLGHM-G--APMATNLLK-----AGYLLNVFDLVQSAVDGLVA-AGASAA----RSARDAVQGADVVISMLPA 69 (300)
T ss_dssp CCEEEEECCSTT-H--HHHHHHHHH-----TTCEEEEECSSHHHHHHHHH-TTCEEC----SSHHHHHTTCSEEEECCSC
T ss_pred cCEEEEeeehHH-H--HHHHHHHHh-----CCCeEEEEcCCHHHHHHHHH-cCCEEc----CCHHHHHhcCCceeecCCc
Confidence 46887764 332 3 345665544 38899988876432222221 111000 0013456789999998886
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
+..++..+.....+. ....+|+. +.-++.. ...+.+.+.+.+...|..++..+++
T Consensus 70 -----~~~v~~V~~~~~g~~-~~~~~g~i---iId~sT~---~p~~~~~~a~~~~~~G~~~lDaPVs 124 (300)
T 3obb_A 70 -----SQHVEGLYLDDDGLL-AHIAPGTL---VLECSTI---APTSARKIHAAARERGLAMLDAPVS 124 (300)
T ss_dssp -----HHHHHHHHHSSSSST-TSCCC-CE---EEECSCC---CHHHHHHHHHHHHTTTCEEEECCEE
T ss_pred -----hHHHHHHHhchhhhh-hcCCCCCE---EEECCCC---CHHHHHHHHHHHHHcCCEEEecCCC
Confidence 566777765432110 01122333 2222221 1122566788888999999987764
No 254
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=40.66 E-value=51 Score=18.82 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=21.0
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++.+ |+++ .+.++++...+.+ .|++++.+|+..
T Consensus 2 ~i~~-y~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~ 35 (75)
T 1r7h_A 2 SITL-YTKPACVQCTATKKALDR-----AGLAYNTVDISL 35 (75)
T ss_dssp CEEE-EECTTCHHHHHHHHHHHH-----TTCCCEEEETTT
T ss_pred eEEE-EeCCCChHHHHHHHHHHH-----cCCCcEEEECCC
Confidence 4544 5544 5788876655543 267888888865
No 255
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=40.50 E-value=60 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=21.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
+||+||-+ ..++|+.+++.+.+. |+.++++..
T Consensus 11 ~~I~IlD~-g~~~~~~i~r~lr~~-----Gv~~~i~p~ 42 (527)
T 3tqi_A 11 HRILILDF-GSQYAQLIARRVREI-----GVYCELMPC 42 (527)
T ss_dssp SEEEEEEC-SCTTHHHHHHHHHHH-----TCEEEEEET
T ss_pred CeEEEEEC-CCccHHHHHHHHHHC-----CCeEEEEEC
Confidence 37998843 245778888877542 778887754
No 256
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=40.35 E-value=94 Score=21.82 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=33.1
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....+..+|++|+....-...-...++.|++.+... ...+.++.++++-
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNK 122 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 355678999999998876654445667777766421 2356788777764
No 257
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=40.27 E-value=47 Score=22.04 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=21.5
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
+.||+.++ +.+++.-+.+. + .|++++.+|+.+..
T Consensus 6 i~iY~~p~C~~c~ka~~~L~----~-~gi~~~~~di~~~~ 40 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLI----E-NNIEYTNRLIVDDN 40 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHH----H-TTCCCEEEETTTTC
T ss_pred EEEEECCCChHHHHHHHHHH----H-cCCceEEEecccCc
Confidence 34676664 55665444443 3 48899999997654
No 258
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=40.02 E-value=63 Score=23.44 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=35.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF 82 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.|| |. |+ +...++..+.+ .|.+|.+++... +.+.++|.||++.|.
T Consensus 20 ~~I~ii-G~--G~---mG~~la~~l~~-~g~~V~~~~~~~-----------------------~~~~~aD~vi~av~~-- 67 (209)
T 2raf_A 20 MEITIF-GK--GN---MGQAIGHNFEI-AGHEVTYYGSKD-----------------------QATTLGEIVIMAVPY-- 67 (209)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECTTC-----------------------CCSSCCSEEEECSCH--
T ss_pred CEEEEE-CC--CH---HHHHHHHHHHH-CCCEEEEEcCCH-----------------------HHhccCCEEEEcCCc--
Confidence 367765 32 32 34444555544 377787765432 145689999999983
Q ss_pred CCcHHHHHHHHHHhc
Q 028847 83 GMMAAQFKAFLDATG 97 (203)
Q Consensus 83 ~~~~~~lk~fld~~~ 97 (203)
..++.+++.+.
T Consensus 68 ----~~~~~v~~~l~ 78 (209)
T 2raf_A 68 ----PALAALAKQYA 78 (209)
T ss_dssp ----HHHHHHHHHTH
T ss_pred ----HHHHHHHHHHH
Confidence 44666666653
No 259
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.81 E-value=65 Score=20.77 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=20.7
Q ss_pred eEEEEEecCcchHHH--HHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEK--LAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~--la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|.|+..+.-+.++. --+.+.+.|.+ .|++++.+|+..
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~-~gi~y~~vdI~~ 48 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEA-NKIEFEEVDITM 48 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCEEEEETTT
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHH-cCCCEEEEECCC
Confidence 555444344466662 12223333334 378899999875
No 260
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=39.53 E-value=1e+02 Score=22.02 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.2
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCc---eEEEEEcCCC
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGV---EAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~---~v~~~~l~~~ 43 (203)
.||.||....+. -|..|.+-..+.+.+. |+ +++++.++-.
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~-Gv~~~~i~v~~VPGa 60 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASL-GVEENNIIIETVPGS 60 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHT-TCCGGGEEEEECSSG
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc-CCCccceEEEECCcH
Confidence 378888877654 4888988888888874 64 4677777653
No 261
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=39.51 E-value=72 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.072 Sum_probs=35.0
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCceEEEEEcCCCCchh
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGVEAKLWQVPETLSED 47 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~ 47 (203)
+++-||.+|..| ++..+++.+.+.++++ |-++-++-+.+..+..
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~-Gkk~y~i~vg~inp~K 309 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKKH-GREARLIVMNDVNYHK 309 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHHT-TCEEEEEEESSCCHHH
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCHHH
Confidence 467899999765 4778999999999884 8888888888865543
No 262
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=39.41 E-value=22 Score=29.77 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=42.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCC--CC-CCC-hhhhhccCeEEEec
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSD--VP-TIT-PNELAEADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~l~~aD~iiigs 78 (203)
+||.||=+-..|.|..++..++..-.- .| +|.++|+.+...+..-.......... .. ..+ .+.+.+||.||++.
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~-~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~ai 83 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERM-SG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISI 83 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSC-CE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECC
T ss_pred CEEEEECCChhHhHHHHHHHHHhcccc-CC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEecc
Confidence 378877443456788888888753322 26 89999886522211110000000000 00 012 35689999999999
Q ss_pred ccC
Q 028847 79 PTR 81 (203)
Q Consensus 79 P~y 81 (203)
++.
T Consensus 84 rvG 86 (450)
T 3fef_A 84 LPG 86 (450)
T ss_dssp CSS
T ss_pred ccC
Confidence 763
No 263
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=39.26 E-value=82 Score=20.97 Aligned_cols=47 Identities=6% Similarity=-0.077 Sum_probs=30.0
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...-...++.|+..+... ...+.++.++++-
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK 120 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGNK 120 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 4567899999998765544345566676665321 2356777777663
No 264
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=39.23 E-value=22 Score=29.61 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=34.0
Q ss_pred eEEEEEecCcchHH----HHHHHHHHHhhccC-CceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSMYGHVE----KLAEEIQKGAASVE-GVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~~G~T~----~la~~i~~~l~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
||+|+--|...||. .-+-.|.+.|.+ . |++|.++|-.-... .......+.+.+||+||+.|
T Consensus 317 ~v~vlGlafK~~tdD~ReSpa~~i~~~L~~-~~g~~V~~~DP~~~~~-------------~~~~~~~~~~~~ad~vvi~t 382 (431)
T 3ojo_A 317 KVTVFGLTYKGDVDDIRESPAFDIYELLNQ-EPDIEVCAYDPHVELD-------------FVEHDMSHAVKDASLVLILS 382 (431)
T ss_dssp EEEEECCCSSTTSCCCTTCHHHHHHHHHHH-STTCEEEEECSSCCCT-------------TBCSTTHHHHTTCSEEEECS
T ss_pred EEEEEeeeeCCCCcchhcChHHHHHHHHHh-hcCCEEEEECCCcccc-------------cccCCHHHHHhCCCEEEEec
Confidence 56665555322221 123344455554 4 78888887643210 00011246788999999998
Q ss_pred c
Q 028847 79 P 79 (203)
Q Consensus 79 P 79 (203)
+
T Consensus 383 ~ 383 (431)
T 3ojo_A 383 D 383 (431)
T ss_dssp C
T ss_pred C
Confidence 6
No 265
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=39.12 E-value=17 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=11.2
Q ss_pred ccCeEEEecccCC
Q 028847 70 EADGILLGFPTRF 82 (203)
Q Consensus 70 ~aD~iiigsP~y~ 82 (203)
+.|+|++++|...
T Consensus 63 ~~D~V~i~tp~~~ 75 (331)
T 4hkt_A 63 DIDAVVICTPTDT 75 (331)
T ss_dssp TCCEEEECSCGGG
T ss_pred CCCEEEEeCCchh
Confidence 6899999999854
No 266
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=39.04 E-value=30 Score=27.17 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=28.2
Q ss_pred CceEEEEEec--C-cchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 2 ATKVYIVYYS--M-YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilIiy~S--~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||||++|..+ + .|-.+..+..+++.++ |.+|.++-....
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~---g~~v~v~~~~~~ 45 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQD---PESIVVFASTQN 45 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTSC---GGGEEEEEECSS
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 3589998764 2 4777778888888882 678888876653
No 267
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=38.99 E-value=24 Score=27.92 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=11.2
Q ss_pred ccCeEEEecccCC
Q 028847 70 EADGILLGFPTRF 82 (203)
Q Consensus 70 ~aD~iiigsP~y~ 82 (203)
+.|+|++++|...
T Consensus 64 ~~D~V~i~tp~~~ 76 (344)
T 3ezy_A 64 NVDAVLVCSSTNT 76 (344)
T ss_dssp TCCEEEECSCGGG
T ss_pred CCCEEEEcCCCcc
Confidence 6899999999853
No 268
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=38.90 E-value=58 Score=21.90 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=23.3
Q ss_pred CceEEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+.+|+.|=+. |-++.+.+.+ +.++. +.++.+++
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l-~~led----eY~ilrVN 36 (124)
T 2g2q_A 1 MKNVLIIFGKPYCSICENVSDAV-EELKS----EYDILHVD 36 (124)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHH-HTTTT----TEEEEEEE
T ss_pred CCceEEEeCCCccHHHHHHHHHH-HHhhc----cccEEEEE
Confidence 589999999985 6666555554 66654 35555544
No 269
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=38.89 E-value=22 Score=28.42 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=25.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||||+++..+..|+...+. .+++.|.+ .|.+|.++..
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLI-QLAWGFRT-AGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHH-HHHHHHHH-CCCEEEEecc
Confidence 4599998776667655443 45566666 4899998875
No 270
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=38.79 E-value=25 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=22.0
Q ss_pred CceEEEEEecCcch---HHHHHHHHHHHhhccCCce
Q 028847 2 ATKVYIVYYSMYGH---VEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 2 m~kilIiy~S~~G~---T~~la~~i~~~l~~~~g~~ 34 (203)
|++|.|+.+|..++ -...|+.+.+.+.+. |+.
T Consensus 13 m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~-G~~ 47 (215)
T 2a33_A 13 FRRICVFCGSSQGKKSSYQDAAVDLGNELVSR-NID 47 (215)
T ss_dssp CSEEEEECCSSCCSSHHHHHHHHHHHHHHHHT-TCE
T ss_pred CCeEEEEECCCCCCchHHHHHHHHHHHHHHHC-CCE
Confidence 45788877998653 246788888888773 543
No 271
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=38.59 E-value=19 Score=25.62 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=29.4
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...-...++.|++.+... ...++++.++++-
T Consensus 96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK 142 (199)
T 2p5s_A 96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA----AHETVPIMLVGNK 142 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----C---CCEEEEEEC
T ss_pred HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 4577899999988765544445566777665421 2347788887763
No 272
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=38.49 E-value=99 Score=22.18 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=38.5
Q ss_pred eEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhc
Q 028847 4 KVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE 70 (203)
Q Consensus 4 kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (203)
||+|++|-. +|+ -+.+.+.+.+...+ .|++++.+.-+.. ..+++. ..+...+
T Consensus 30 ~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~-~G~~l~~~QSN~E--GeLId~------------Ih~A~~~ 94 (172)
T 3n8k_A 30 IVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAE-LGLKAVVRQSDSE--AQLLDW------------IHQAADA 94 (172)
T ss_dssp EEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHH-TTCEEEEEECSCH--HHHHHH------------HHHHHHH
T ss_pred EEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHHHH------------HHHhhhc
Confidence 899999885 343 34445556666665 4888888765532 111110 1223456
Q ss_pred cCeEEEecccCC
Q 028847 71 ADGILLGFPTRF 82 (203)
Q Consensus 71 aD~iiigsP~y~ 82 (203)
+|+|||=---|-
T Consensus 95 ~dgIIINPgAyT 106 (172)
T 3n8k_A 95 AEPVILNAGGLT 106 (172)
T ss_dssp TCCEEEECGGGG
T ss_pred CcEEEECcchhh
Confidence 899999877763
No 273
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=38.43 E-value=68 Score=25.70 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=7.5
Q ss_pred hhhhccCeEEEe
Q 028847 66 NELAEADGILLG 77 (203)
Q Consensus 66 ~~l~~aD~iiig 77 (203)
+.+.++|+|++.
T Consensus 41 ~~~~~~d~li~~ 52 (343)
T 2yq5_A 41 DLAEGCSSVSLK 52 (343)
T ss_dssp GGGTTCSEEEEC
T ss_pred HHhcCCcEEEEc
Confidence 456667766654
No 274
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=38.36 E-value=20 Score=27.88 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|.|||+|+.+. . +..+.+.+++ .|+++.+++...
T Consensus 1 m~m~Ililg~g---~----~~~l~~a~~~-~G~~v~~~~~~~ 34 (334)
T 2r85_A 1 MKVRIATYASH---S----ALQILKGAKD-EGFETIAFGSSK 34 (334)
T ss_dssp CCSEEEEESST---T----HHHHHHHHHH-TTCCEEEESCGG
T ss_pred CceEEEEECCh---h----HHHHHHHHHh-CCCEEEEEECCC
Confidence 54589988765 3 3444555555 388888877653
No 275
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=38.17 E-value=14 Score=27.61 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=24.7
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEE
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIF 113 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~ 113 (203)
..+.++|.|||.||. .++.|++.+.. .+.+++++++
T Consensus 46 ~~l~~~d~viftS~~-------aV~~~~~~l~~-----~l~~~~~~aV 81 (240)
T 3mw8_A 46 DELSRADILIFISTS-------AVSFATPWLKD-----QWPKATYYAV 81 (240)
T ss_dssp HHHTTCSEEEECSHH-------HHHHHHHHHTT-----CCCSSEEEES
T ss_pred HHhcCCCEEEEECHH-------HHHHHHHHHHh-----hCcCCeEEEE
Confidence 457889999999985 56778777641 3555555443
No 276
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=38.11 E-value=88 Score=20.85 Aligned_cols=48 Identities=6% Similarity=-0.015 Sum_probs=31.4
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...+.++.++++-
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK 120 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNK 120 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEEC
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 44578899999988765544445566777766421 3456777777764
No 277
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=38.00 E-value=63 Score=22.77 Aligned_cols=75 Identities=7% Similarity=-0.014 Sum_probs=40.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||.+|+|+.+.. ....+++.+.-.+.+. -.+..+++....++.+.... .....++...|.|||-+=.
T Consensus 20 ~~~~iII~sHG~--~A~gl~~s~~~i~G~~--~~v~av~~~~~~~~~~~~~~---------~~~i~~~~~~~gVLiLtDl 86 (159)
T 3mtq_A 20 MKRHYIFASHGS--FANGLLNSVELILGKQ--PDIHTLCAYVEEEVDLTQQV---------EALVARFPAQDELIVITDI 86 (159)
T ss_dssp CCEEEEEEEETT--HHHHHHHHHHHHHCCC--TTEEEEEETSCSSSCHHHHH---------HHHHHTSCTTSEEEEEESC
T ss_pred cCceEEEEeCcH--HHHHHHHHHHHHcCCC--CCeEEEECCCCCHHHHHHHH---------HHHHHhcCCCCCEEEEEeC
Confidence 344565555433 4455666666566542 25777776543322221110 0012344557899999999
Q ss_pred CCCCcHHH
Q 028847 81 RFGMMAAQ 88 (203)
Q Consensus 81 y~~~~~~~ 88 (203)
|.|++.-.
T Consensus 87 ~GGSP~n~ 94 (159)
T 3mtq_A 87 FAGSVNNE 94 (159)
T ss_dssp TTSHHHHH
T ss_pred CCCCHHHH
Confidence 98886543
No 278
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=37.81 E-value=67 Score=27.58 Aligned_cols=33 Identities=3% Similarity=0.088 Sum_probs=22.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
.||+||-+- .++|+.+++.+.+ .|+.++++...
T Consensus 8 ~~IlilD~G-s~~~~~I~r~lre-----~Gv~~eiv~~~ 40 (556)
T 3uow_A 8 DKILVLNFG-SQYFHLIVKRLNN-----IKIFSETKDYG 40 (556)
T ss_dssp CEEEEEESS-CTTHHHHHHHHHH-----TTCCEEEEETT
T ss_pred CEEEEEECC-CccHHHHHHHHHH-----CCCeEEEEECC
Confidence 478888532 4578888888765 27788887653
No 279
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=37.80 E-value=30 Score=24.30 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=5.4
Q ss_pred CCceEEEEEe
Q 028847 1 MATKVYIVYY 10 (203)
Q Consensus 1 mm~kilIiy~ 10 (203)
||++|+.+-|
T Consensus 1 MmptIl~lHG 10 (202)
T 4fle_A 1 MMSTLLYIHG 10 (202)
T ss_dssp --CEEEEECC
T ss_pred CCcEEEEeCC
Confidence 7877776655
No 280
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=37.67 E-value=19 Score=24.29 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.2
Q ss_pred hhhccCeEEEecccC
Q 028847 67 ELAEADGILLGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
.+.++|.+|+.+|.-
T Consensus 68 ~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 68 HLECAKWLILTIPNG 82 (140)
T ss_dssp TGGGCSEEEECCSCH
T ss_pred CcccCCEEEEECCCh
Confidence 367899999999873
No 281
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=37.62 E-value=83 Score=25.05 Aligned_cols=69 Identities=12% Similarity=-0.027 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~~~~lk~ 91 (203)
+|.+...+...++.|++ .|+++.++++....|-+.- ...+.+.+++.||+.=--+ .+++-..+..
T Consensus 224 ~Gs~~~~a~~Aa~~L~~-~Gi~v~vv~~~~l~P~d~~-------------~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~ 289 (341)
T 2ozl_B 224 HSRPVGHCLEAAAVLSK-EGVECEVINMRTIRPMDME-------------TIEASVMKTNHLVTVEGGWPQFGVGAEICA 289 (341)
T ss_dssp CSTHHHHHHHHHHHHHT-TTCCEEEEECCEEETCCHH-------------HHHHHHHHHSCEEEECSSCSTTCHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHh-cCCCeEEEeeeeecCCCHH-------------HHHHHHhcCCeEEEEecCcccCcHHHHHHH
Confidence 45566667777777877 4899999999865331100 0123455666665553223 4667666776
Q ss_pred HHHH
Q 028847 92 FLDA 95 (203)
Q Consensus 92 fld~ 95 (203)
++..
T Consensus 290 ~l~~ 293 (341)
T 2ozl_B 290 RIME 293 (341)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 282
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=37.37 E-value=60 Score=21.27 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=23.1
Q ss_pred CCceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|++|||+-+ +|. ++...++...+.++. .+.++.++.+.
T Consensus 1 m~~~ILv~~D~s~--~s~~al~~a~~la~~-~~a~l~ll~v~ 39 (141)
T 1jmv_A 1 MYKHILVAVDLSE--ESPILLKKAVGIAKR-HDAKLSIIHVD 39 (141)
T ss_dssp CCSEEEEEECCST--THHHHHHHHHHHHHH-HTCEEEEEEEE
T ss_pred CCceEEEEecCch--hhHHHHHHHHHHHHh-cCCEEEEEEEe
Confidence 778888776 444 344455555444444 26678887775
No 283
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=37.09 E-value=56 Score=26.35 Aligned_cols=39 Identities=5% Similarity=-0.058 Sum_probs=30.4
Q ss_pred eEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||.|++|-.++ -+-.=|..+.+.|.+ .+.++..+++...
T Consensus 6 ~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~~ 47 (372)
T 3tqt_A 6 HISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDHV 47 (372)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred EEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECCC
Confidence 69999996543 466667788888887 4889999998754
No 284
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=36.26 E-value=60 Score=21.81 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=21.6
Q ss_pred EEEEecC-cchHH--HHHHHHHHHhhccCCceEEEEEcCC
Q 028847 6 YIVYYSM-YGHVE--KLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 6 lIiy~S~-~G~T~--~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++||.|+ .|+++ +=-..+...|.. .|++.+.+|+..
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~-kgV~feEidI~~ 40 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEA-NKIGFEEKDIAA 40 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHH-CCCceEEEECCC
Confidence 5667665 57763 222333344444 388999999974
No 285
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=36.13 E-value=65 Score=18.78 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=21.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|.+++.+.-+.++++...+.+ .+++++.+|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~ 35 (81)
T 1h75_A 2 RITIYTRNDCVQCHATKRAMEN-----RGFDFEMINVDR 35 (81)
T ss_dssp CEEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTT
T ss_pred EEEEEcCCCChhHHHHHHHHHH-----CCCCeEEEECCC
Confidence 5655444446788876665543 267788888864
No 286
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=36.09 E-value=89 Score=25.04 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=56.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCC-hhhhhcc---CeEEEec
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTIT-PNELAEA---DGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~a---D~iiigs 78 (203)
+||.|| |. |+ |...++..+.+ .|.+|.++|......+.... .... .... .+.+.++ |.||+..
T Consensus 23 mkIgiI-Gl--G~---mG~~~A~~L~~-~G~~V~v~dr~~~~~~~l~~-~g~~-----~~~s~~e~~~~a~~~DvVi~~v 89 (358)
T 4e21_A 23 MQIGMI-GL--GR---MGADMVRRLRK-GGHECVVYDLNVNAVQALER-EGIA-----GARSIEEFCAKLVKPRVVWLMV 89 (358)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHT-TTCB-----CCSSHHHHHHHSCSSCEEEECS
T ss_pred CEEEEE-Cc--hH---HHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHH-CCCE-----EeCCHHHHHhcCCCCCEEEEeC
Confidence 477766 43 32 33444444444 37788888765322221111 0000 0011 2345667 9999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
|.. . ++..++.+.. .++...+ +...++.. ......+.+.+...|..+++.++
T Consensus 90 p~~--~----v~~vl~~l~~-----~l~~g~i--iId~st~~---~~~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 90 PAA--V----VDSMLQRMTP-----LLAANDI--VIDGGNSH---YQDDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp CGG--G----HHHHHHHHGG-----GCCTTCE--EEECSSCC---HHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CHH--H----HHHHHHHHHh-----hCCCCCE--EEeCCCCC---hHHHHHHHHHHHHCCCEEEeCCC
Confidence 986 3 4455555532 2322222 22222211 11234456777778888877654
No 287
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=36.04 E-value=39 Score=29.04 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=30.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 79 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP 79 (203)
|++|+||-+- .|++..+.+.+.+ .|+++.++...+ ...+.++|+|||.-|
T Consensus 4 m~~I~Iid~~-~g~~~~~~~~l~~-----~G~~~~vv~~~~----------------------~~~l~~~DglILpGg 53 (555)
T 1jvn_A 4 MPVVHVIDVE-SGNLQSLTNAIEH-----LGYEVQLVKSPK----------------------DFNISGTSRLILPGV 53 (555)
T ss_dssp SCEEEEECCS-CSCCHHHHHHHHH-----TTCEEEEESSGG----------------------GCCSTTCSCEEEEEC
T ss_pred CCEEEEEECC-CCCHHHHHHHHHH-----CCCEEEEECCcc----------------------ccccccCCEEEECCC
Confidence 4589988542 3566655555543 277777654211 013668999999664
No 288
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=35.95 E-value=66 Score=25.63 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.4
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+||.|++|-.++ -+-.=+..+.+.|.+ .|.++..+++...
T Consensus 4 ~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~~ 46 (364)
T 3i12_A 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDKA 46 (364)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred cEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECCC
Confidence 479999986543 355667788888887 4899999998753
No 289
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=35.95 E-value=41 Score=25.67 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCceEEEEEecCc------chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMY------GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~------G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|| ||+|+++... -.+. .+.+.+++ .|+++.+++..+
T Consensus 1 mm-~i~il~~~~~~~~~~~~s~~----~l~~a~~~-~G~~v~~~d~~~ 42 (316)
T 1gsa_A 1 MI-KLGIVMDPIANINIKKDSSF----AMLLEAQR-RGYELHYMEMGD 42 (316)
T ss_dssp CC-EEEEECSCGGGCCTTTCHHH----HHHHHHHH-TTCEEEEECGGG
T ss_pred Cc-eEEEEeCcHHhCCcCCChHH----HHHHHHHH-CCCEEEEEchhH
Confidence 54 8999997642 1233 34555555 388988888754
No 290
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=35.94 E-value=1.1e+02 Score=21.18 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=30.0
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCC--CCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL--AGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l--~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.++..+.. ...+ .++++.++++-
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~~piilv~nK 135 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLN---HPDIKHRRIPILFFANK 135 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH---STTTTTSCCCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHh---ChhhccCCCeEEEEEeC
Confidence 3467899999998776543323344555555421 1123 57888888774
No 291
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=35.93 E-value=11 Score=31.78 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=38.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhH---hhhc--CCCCCCCCC-CCCh-hhhhccCeEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDV---LGKM--GAGPKSDVP-TITP-NELAEADGILL 76 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~---~~~~--~~~~~~~~~-~~~~-~~l~~aD~iii 76 (203)
||.||- ..+..+..+|..++..-....+.++.++|+.....+.. .... ......... ..+. +.+.+||.||+
T Consensus 30 KIaVIG-aGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVi 108 (472)
T 1u8x_X 30 SIVIAG-GGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA 108 (472)
T ss_dssp EEEEEC-TTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred EEEEEC-CCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEE
Confidence 788774 33335666666665531110144788988865322111 1100 000000000 0123 67899999999
Q ss_pred eccc
Q 028847 77 GFPT 80 (203)
Q Consensus 77 gsP~ 80 (203)
..|+
T Consensus 109 aag~ 112 (472)
T 1u8x_X 109 HIRV 112 (472)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 9998
No 292
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=35.81 E-value=73 Score=25.23 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=28.1
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM--YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~--~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||++|.... .|-.+..+..+++.|.+ . .+|+++....
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~-~-~~V~v~~~~~ 40 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISK-A-HEVIVFGIHA 40 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTT-T-SEEEEEEESC
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHh-c-CCeEEEeecC
Confidence 899886442 47778888889999987 4 7888887654
No 293
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=35.74 E-value=24 Score=27.85 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.9
Q ss_pred hhhhhccCeEEEecccC
Q 028847 65 PNELAEADGILLGFPTR 81 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y 81 (203)
.+.+.++|.||.+||.-
T Consensus 178 ~eav~~aDIVi~aT~s~ 194 (313)
T 3hdj_A 178 ADIAAQADIVVTATRST 194 (313)
T ss_dssp HHHHHHCSEEEECCCCS
T ss_pred HHHHhhCCEEEEccCCC
Confidence 34678999999999973
No 294
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=35.63 E-value=86 Score=24.37 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=37.7
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhh-ccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAA-SVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~-~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
+.+++||.+ +|-|. +|..++..+. . .|..+.++...+. ...+.. ........ .....+.++|.|||==
T Consensus 153 ~~lll~G~~GtGKT~-La~aia~~~~~~-~g~~v~~~~~~~l-~~~l~~---~~~~~~~~-~~~~~~~~~~lLiiDd 222 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSY-LLAAMAHELSEK-KGVSTTLLHFPSF-AIDVKN---AISNGSVK-EEIDAVKNVPVLILDD 222 (308)
T ss_dssp CEEEEECSTTSSHHH-HHHHHHHHHHHH-SCCCEEEEEHHHH-HHHHHC---CCC----C-CTTHHHHTSSEEEEET
T ss_pred ceEEEECCCCCCHHH-HHHHHHHHHHHh-cCCcEEEEEHHHH-HHHHHH---HhccchHH-HHHHHhcCCCEEEEcC
Confidence 467788886 78887 5667777666 5 3767777766532 111111 11111111 1245677888888764
No 295
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=35.62 E-value=26 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||+||+|+.. | .++..+.+.+++. |+++..++-
T Consensus 1 m~k~ilI~g~---g---~~~~~~~~a~~~~-G~~vv~v~~ 33 (449)
T 2w70_A 1 MLDKIVIANR---G---EIALRILRACKEL-GIKTVAVHS 33 (449)
T ss_dssp CCSEEEECCC---H---HHHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCceEEEeCC---c---HHHHHHHHHHHHc-CCeEEEEec
Confidence 8888888753 2 2344455555553 888877764
No 296
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=35.48 E-value=52 Score=21.55 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++|||+-+.- +..+..+++...+.++. .+.++.++.+.+
T Consensus 1 m~~~ILv~~D~-s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 40 (137)
T 2z08_A 1 MFKTILLAYDG-SEHARRAAEVAKAEAEA-HGARLIVVHAYE 40 (137)
T ss_dssp CCSEEEEECCS-SHHHHHHHHHHHHHHHH-HTCEEEEEEEEC
T ss_pred CcceEEEEeCC-CHHHHHHHHHHHHHHhh-cCCEEEEEEEec
Confidence 77888876632 33445555555555544 266888887754
No 297
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=35.36 E-value=58 Score=26.05 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=11.8
Q ss_pred hhh-hccCeEEEeccc
Q 028847 66 NEL-AEADGILLGFPT 80 (203)
Q Consensus 66 ~~l-~~aD~iiigsP~ 80 (203)
+++ .++|.+++++|-
T Consensus 70 ~~~~~~~Dvvf~a~p~ 85 (337)
T 3dr3_A 70 SEFSPGVDVVFLATAH 85 (337)
T ss_dssp GGTCTTCSEEEECSCH
T ss_pred HHHhcCCCEEEECCCh
Confidence 455 788999999885
No 298
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=35.26 E-value=54 Score=26.31 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=27.3
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHh-hccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGA-ASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l-~~~~g~~v~~~~l~~ 42 (203)
+||+|+++-.+. -+-.=+..+.+.| .+ .|.++..+++..
T Consensus 4 ~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~ 46 (377)
T 1ehi_A 4 KRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQ 46 (377)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECT
T ss_pred cEEEEEeCCCCCCcceeHHHHHHHHHHhCcc-cCcEEEEEEEcC
Confidence 489999986543 1223356677777 66 489999999864
No 299
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.02 E-value=52 Score=22.04 Aligned_cols=47 Identities=6% Similarity=-0.010 Sum_probs=30.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+....-...-...++.|+..+... ...+.++.++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~n 116 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGN 116 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 34578899999998765544445566666665321 235778877776
No 300
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=34.87 E-value=49 Score=26.31 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=27.6
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||+||++..+. -+-.=+..+.+.|++ .|+++..+++..
T Consensus 4 ~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (364)
T 2i87_A 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITN 45 (364)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECT
T ss_pred cEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcC
Confidence 589999976532 233345677888887 499999988764
No 301
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=34.78 E-value=31 Score=23.05 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=21.2
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
+.||+.++ +.+++.-+.+ .+ .|++++.+|+.+..
T Consensus 7 i~iY~~p~C~~c~ka~~~L----~~-~gi~~~~~di~~~~ 41 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALV----EQ-QGITPQVVLYLETP 41 (121)
T ss_dssp CEEECCTTCHHHHHHHHHH----HT-TTCCCEEECTTTSC
T ss_pred EEEEECCCCHHHHHHHHHH----HH-cCCCcEEEeeccCC
Confidence 45676664 5555544443 33 48899999987654
No 302
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=34.68 E-value=44 Score=24.93 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+.+++.+.......+++.|++.+++. |++|++..+.
T Consensus 130 l~l~~~~~~~~~~~~a~~iq~~l~~i-Gi~v~i~~~~ 165 (258)
T 3lvu_A 130 LRFLLRQGDSDMQTVLEIYTRALERL-GIAAQIEKVD 165 (258)
T ss_dssp CEEEEETTCHHHHHHHHHHHHHHHTT-TCCCEEEEEC
T ss_pred EEEEecCCChhHHHHHHHHHHHHHHc-CCeeEEEecC
Confidence 34455554456788999999999995 9998887654
No 303
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
Probab=34.66 E-value=72 Score=27.26 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.8
Q ss_pred hhhhhccCeEEEeccc
Q 028847 65 PNELAEADGILLGFPT 80 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~ 80 (203)
.+.+.++|.||+..|.
T Consensus 116 aEAa~~ADVVILaVP~ 131 (525)
T 3fr7_A 116 WETVSGSDLVLLLISD 131 (525)
T ss_dssp HHHHHHCSEEEECSCH
T ss_pred HHHHhcCCEEEECCCh
Confidence 4567899999999998
No 304
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=34.43 E-value=1.3e+02 Score=21.55 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=31.8
Q ss_pred hhhhhccCeEEEecccCCCCcHHH-HHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQ-FKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~-lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-+-...--.. ++.|++.+.. ...+.++.++++-
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~nK 140 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-----YCPSTRVLLIGCK 140 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH-----HCTTSEEEEEEEC
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 345778999999988765433333 5777777642 2357888888773
No 305
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=34.33 E-value=70 Score=25.15 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEecccC-CCCcHHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~y-~~~~~~~lk~ 91 (203)
+|.+-..+...++.|++ .|++++++++....|=+.- ...+.+.+++.+|+.=--+ .+++-..+..
T Consensus 210 ~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~~-------------~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~ 275 (324)
T 1umd_B 210 YGTVMPEVLQAAAELAK-AGVSAEVLDLRTLMPWDYE-------------AVMNSVAKTGRVVLVSDAPRHASFVSEVAA 275 (324)
T ss_dssp CGGGHHHHHHHHHHHHH-TTCCEEEEECCEEETCCHH-------------HHHHHHHHHSCEEEEEEEESTTCHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEEeceecCCCHH-------------HHHHHHhcCCeEEEEecCCcCCCHHHHHHH
Confidence 34455566666677776 4899999999865331100 0123456666666653323 5667666766
Q ss_pred HHHH
Q 028847 92 FLDA 95 (203)
Q Consensus 92 fld~ 95 (203)
++..
T Consensus 276 ~l~~ 279 (324)
T 1umd_B 276 TIAE 279 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 306
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=34.33 E-value=1.6e+02 Score=22.71 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=28.0
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++|.+|..+.. .....+.+.+.+.+++. |+++.+.+...
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g~~~~~~~~~~ 44 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-GLDLRILYAER 44 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-TCEEEEEECTT
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 36777776543 45678888888888884 88888876543
No 307
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=33.98 E-value=61 Score=23.00 Aligned_cols=35 Identities=26% Similarity=0.175 Sum_probs=21.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|..+|.||.+|.+- ..+++..++.+++ -|+++++.
T Consensus 1 ~~~~V~Iimgs~SD--~~v~~~a~~~l~~-~gi~~ev~ 35 (159)
T 3rg8_A 1 MRPLVIILMGSSSD--MGHAEKIASELKT-FGIEYAIR 35 (159)
T ss_dssp -CCEEEEEESSGGG--HHHHHHHHHHHHH-TTCEEEEE
T ss_pred CCCeEEEEECcHHH--HHHHHHHHHHHHH-cCCCEEEE
Confidence 55689999999642 3345555555555 37665543
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=33.85 E-value=60 Score=21.68 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=31.1
Q ss_pred ChhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 64 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
....+..+|++|+....-...-...++.|+..+.. ...++++.++++-
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~piilv~nK 118 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA-----EVGDIPTALVQNK 118 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH-----HHCSCCEEEEEEC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 34567899999999877554333445566666532 1257788877774
No 309
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=33.44 E-value=1.1e+02 Score=21.38 Aligned_cols=59 Identities=15% Similarity=-0.084 Sum_probs=30.2
Q ss_pred ceEEEEEecC--------cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh--ccC
Q 028847 3 TKVYIVYYSM--------YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA--EAD 72 (203)
Q Consensus 3 ~kilIiy~S~--------~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD 72 (203)
+|+.||.-+. ..|+..+++. +++ .|+++..+.+-..+++.+.+. ..+.+. ++|
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~----l~~-~G~~v~~~~iv~Dd~~~i~~~------------l~~~~~~~~~D 64 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREV----LAG-GPFEVAAYELVPDEPPMIKKV------------LRLWADREGLD 64 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHH----HTT-SSEEEEEEEEECSCHHHHHHH------------HHHHHHTSCCS
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHH----HHH-CCCeEeEEEEcCCCHHHHHHH------------HHHHHhcCCCC
Confidence 4888887552 2455555444 444 377765544433333333221 122334 588
Q ss_pred eEEEec
Q 028847 73 GILLGF 78 (203)
Q Consensus 73 ~iiigs 78 (203)
.||..-
T Consensus 65 lVittG 70 (164)
T 2is8_A 65 LILTNG 70 (164)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 888763
No 310
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=33.21 E-value=83 Score=24.15 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.4
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++|.|+|.+...|.....+.+.+.+.+ .|.++.......
T Consensus 141 k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~ 179 (302)
T 3lkv_A 141 KSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALK 179 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 688999988777777778888888777 477665555443
No 311
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=33.09 E-value=26 Score=28.85 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=21.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+||||+... .++..+.+.+++. |+++..++-.
T Consensus 5 ~~~kiLI~g~g------~~a~~i~~aa~~~-G~~~v~v~~~ 38 (446)
T 3ouz_A 5 EIKSILIANRG------EIALRALRTIKEM-GKKAICVYSE 38 (446)
T ss_dssp CCCEEEECCCH------HHHHHHHHHHHHT-TCEEEEEEEG
T ss_pred ccceEEEECCC------HHHHHHHHHHHHc-CCEEEEEEcC
Confidence 45677775422 1566666777764 8888777543
No 312
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=33.02 E-value=87 Score=26.36 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.1
Q ss_pred hhhhhccCeEEEecccCC
Q 028847 65 PNELAEADGILLGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+.++|.||++.|+-.
T Consensus 96 ~ea~~~aDvViiaVptp~ 113 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPF 113 (478)
T ss_dssp GGGGGGCSEEEECCCCCC
T ss_pred HHHHhcCCEEEEecCCch
Confidence 456889999999999864
No 313
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=32.80 E-value=50 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=21.4
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||+|+.+. .++..++..+++. |+++..+| ..
T Consensus 25 ~~I~ilGgG------~lg~~l~~aa~~l-G~~v~~~d-~~ 56 (403)
T 3k5i_A 25 RKVGVLGGG------QLGRMLVESANRL-NIQVNVLD-AD 56 (403)
T ss_dssp CEEEEECCS------HHHHHHHHHHHHH-TCEEEEEE-ST
T ss_pred CEEEEECCC------HHHHHHHHHHHHC-CCEEEEEE-CC
Confidence 477777654 3556666666663 88999988 53
No 314
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=32.77 E-value=29 Score=24.19 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=9.8
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 028847 80 TRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 80 ~y~~~~~~~lk~fld~~~ 97 (203)
.|+++|+..||+|++.+-
T Consensus 15 ~~~~~m~~~Lq~~L~~ll 32 (143)
T 3cpt_A 15 LYFQGSADDLKRFLYKKL 32 (143)
T ss_dssp -------CHHHHHHHHHG
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 589999999999998874
No 315
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=32.72 E-value=1.3e+02 Score=21.02 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=30.9
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..++.|+..+... ...++++.++++-
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNK 122 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEEC
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 3567899999998765543334566677666421 3457888888774
No 316
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=32.43 E-value=90 Score=21.64 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=31.4
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..++.|++.+... ...+.++.++++-
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 137 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNK 137 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 4578899999987765543334566677766421 3467888888774
No 317
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=32.22 E-value=1.2e+02 Score=20.52 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=33.1
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
...|.+|+..|. ......++.+. . .|.+..++.++ +. . +++.+.....|+.+++..
T Consensus 68 ~~vDlvii~vp~------~~v~~v~~~~~------~-~g~~~i~~~~~-~~---~----~~l~~~a~~~Gi~~igpn 123 (138)
T 1y81_A 68 KDVDVIVFVVPP------KVGLQVAKEAV------E-AGFKKLWFQPG-AE---S----EEIRRFLEKAGVEYSFGR 123 (138)
T ss_dssp TTCCEEEECSCH------HHHHHHHHHHH------H-TTCCEEEECTT-SC---C----HHHHHHHHHHTCEEECSC
T ss_pred CCCCEEEEEeCH------HHHHHHHHHHH------H-cCCCEEEEcCc-cH---H----HHHHHHHHHCCCEEEcCC
Confidence 368999999993 33344444432 1 24445444332 21 1 346677788899999754
No 318
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=31.93 E-value=32 Score=27.37 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=24.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|||+++..+..|+...++ .+++.|.+ .|.+|.++--
T Consensus 16 MrIl~~~~~~~gh~~~~~-~La~~L~~-~GheV~v~~~ 51 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLV-PLSWALRA-AGHEVLVAAS 51 (398)
T ss_dssp CEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEE
T ss_pred eEEEEEcCCCcchHHHHH-HHHHHHHH-CCCEEEEEcC
Confidence 489988766666654433 45566666 3889988764
No 319
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=31.92 E-value=46 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=19.9
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhh
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAA 28 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~ 28 (203)
||.+++++.|-+ +|.|- +++.+++.+.
T Consensus 1 m~~~~i~l~G~~GsGKST-~a~~La~~l~ 28 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSG-IVRCLQSVLP 28 (178)
T ss_dssp CCCCEEEEECCTTSSHHH-HHHHHHHHSS
T ss_pred CCceEEEEECCCCCCHHH-HHHHHHHhcC
Confidence 776777777665 67765 7888888874
No 320
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=31.89 E-value=82 Score=24.05 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|.+.|-.|+..+.+ +.+.+++.+++ .|++++++...++
T Consensus 6 k~i~vgat~~P~ae-il~~vk~~l~k-~Gi~leiv~F~Dy 43 (249)
T 4got_A 6 KEIVVAATKTPHAE-ILKEAEPLLKE-KGYTLKVKVLSDY 43 (249)
T ss_dssp TEEEEEECTTTHHH-HHHHHHHHHHT-TTCEEEEECCSST
T ss_pred ceEEEEeCCCCHHH-HHHHHHHHHHh-cCCeEEEEEeCCc
Confidence 45566677766666 56888889988 4999999999876
No 321
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=31.88 E-value=1.4e+02 Score=21.46 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=34.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCC-C-CCCCCCCCChhhhhccCeEEEecccC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGA-G-PKSDVPTITPNELAEADGILLGFPTR 81 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~aD~iiigsP~y 81 (203)
||+| .|...+ +...+++.|.+ .|.+|..++-........... .. . -.-|......+.+...|.||......
T Consensus 23 ~ilV-tGatG~----iG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 23 RVLV-VGANGK----VARYLLSELKN-KGHEPVAMVRNEEQGPELRER-GASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp EEEE-ETTTSH----HHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHT-TCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred eEEE-ECCCCh----HHHHHHHHHHh-CCCeEEEEECChHHHHHHHhC-CCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 5554 444333 44444444444 377888776543322211110 11 0 00011122355677899999887765
Q ss_pred C
Q 028847 82 F 82 (203)
Q Consensus 82 ~ 82 (203)
.
T Consensus 96 ~ 96 (236)
T 3e8x_A 96 P 96 (236)
T ss_dssp T
T ss_pred C
Confidence 3
No 322
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=31.83 E-value=24 Score=25.36 Aligned_cols=99 Identities=13% Similarity=-0.040 Sum_probs=49.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChh--hhhccCeEEEecc-
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPN--ELAEADGILLGFP- 79 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~aD~iiigsP- 79 (203)
+|++.|... .|.-+.=+-...+.+++ .|++|+++....-... ...+..-. +....+ +..++|+||+-.-
T Consensus 8 ~~~v~il~~-~gFe~~E~~~p~~~l~~-ag~~V~~~s~~~~~v~---~~~G~~v~---~d~~l~~v~~~~yD~liiPGG~ 79 (177)
T 4hcj_A 8 NNILYVMSG-QNFQDEEYFESKKIFES-AGYKTKVSSTFIGTAQ---GKLGGMTN---IDLLFSEVDAVEFDAVVFVGGI 79 (177)
T ss_dssp CEEEEECCS-EEECHHHHHHHHHHHHH-TTCEEEEEESSSEEEE---ETTSCEEE---ECEEGGGCCGGGCSEEEECCSG
T ss_pred CCEEEEECC-CCccHHHHHHHHHHHHH-CCCEEEEEECCCCeEe---eCCCCEEe---cCccHHHCCHhHCCEEEECCCc
Confidence 355544433 34322112345567777 4899998876542110 00000000 011122 3568999998421
Q ss_pred -cCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 80 -TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 80 -~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.....-.+.+..|+.+.. -+||+++.++++
T Consensus 80 g~~~l~~~~~~~~~l~~~~-------~~~k~iaaIC~g 110 (177)
T 4hcj_A 80 GCITLWDDWRTQGLAKLFL-------DNQKIVAGIGSG 110 (177)
T ss_dssp GGGGGTTCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred cHHHHhhCHHHHHHHHHHH-------HhCCEEEEeccc
Confidence 112223456777887763 257777777653
No 323
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=31.66 E-value=79 Score=24.70 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=11.8
Q ss_pred hhhhhccCeEEEec
Q 028847 65 PNELAEADGILLGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.++|+|+|+-
T Consensus 105 ~~~l~~ad~I~v~G 118 (291)
T 3en0_A 105 RLFVEQCTGIFMTG 118 (291)
T ss_dssp HHHHHHCSEEEECC
T ss_pred HHHHhcCCEEEECC
Confidence 45799999999985
No 324
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=31.65 E-value=1.2e+02 Score=20.39 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=42.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC-CchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET-LSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|.+++|+.++. ..+.+++.+...+.+ ...+..+++... .++...+... ...+++.+.|.|+|-+=.
T Consensus 1 mi~iii~sHG~--~A~gl~~~~~~i~G~--~~~v~ai~~~~~~~~~~~~~~i~---------~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 1 TIAIVIGTHGW--AAEQLLKTAEMLLGE--QENVGWIDFVPGENAETLIEKYN---------AQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp CCEEEEECSBT--HHHHHHHHHHHHHCC--CSSEEEECBCTTCCHHHHHHHHH---------HHHTTSCCTTCEEEEESS
T ss_pred CceEEEEeChH--HHHHHHHHHHHHcCC--cCCEEEEEeeCCCCHHHHHHHHH---------HHHHhcCCCCCEEEEEEC
Confidence 34677666543 445556655555543 136788887643 2333322100 012344455789999999
Q ss_pred CCCCcHHHHHH
Q 028847 81 RFGMMAAQFKA 91 (203)
Q Consensus 81 y~~~~~~~lk~ 91 (203)
|.|++.-....
T Consensus 68 ~GGSp~n~a~~ 78 (135)
T 1pdo_A 68 WGGSPFNAASR 78 (135)
T ss_dssp TTSHHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88887665433
No 325
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=31.60 E-value=38 Score=26.80 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=34.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCc-eEEEEEcCCCCchhH---hhhc-C-CCCCCCC-CCCChhhhhccCeEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDV---LGKM-G-AGPKSDV-PTITPNELAEADGIL 75 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~-~v~~~~l~~~~~~~~---~~~~-~-~~~~~~~-~~~~~~~l~~aD~ii 75 (203)
+||.||-+-.-|.+ +|..++. .|. ++.++|+.....+.. +... . ....... .....+.+.+||.||
T Consensus 5 ~kI~VIGaG~vG~~--ia~~la~-----~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi 77 (322)
T 1t2d_A 5 AKIVLVGSGMIGGV--MATLIVQ-----KNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVI 77 (322)
T ss_dssp CEEEEECCSHHHHH--HHHHHHH-----TTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHH--HHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEE
Confidence 58887743222433 5555543 244 788888875322211 1100 0 0000000 001246799999999
Q ss_pred Eec
Q 028847 76 LGF 78 (203)
Q Consensus 76 igs 78 (203)
+..
T Consensus 78 ~a~ 80 (322)
T 1t2d_A 78 VTA 80 (322)
T ss_dssp ECC
T ss_pred EeC
Confidence 997
No 326
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=31.59 E-value=45 Score=29.76 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=51.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhh--hhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNE--LAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~aD~iiigsP~ 80 (203)
+||+|+.+. |....=+....+.++.+ |++++++....-... ...+..-. +....++ ..++|+|||..-.
T Consensus 535 rkVaILl~d--Gfe~~El~~p~dvL~~A-G~~V~ivS~~gg~V~---ss~G~~v~---~d~~l~~v~~~~yDaViVPGG~ 605 (715)
T 1sy7_A 535 RRVAIIIAD--GYDNVAYDAAYAAISAN-QAIPLVIGPRRSKVT---AANGSTVQ---PHHHLEGFRSTMVDAIFIPGGA 605 (715)
T ss_dssp CEEEEECCT--TBCHHHHHHHHHHHHHT-TCEEEEEESCSSCEE---BTTSCEEC---CSEETTTCCGGGSSEEEECCCH
T ss_pred CEEEEEEcC--CCCHHHHHHHHHHHHhc-CCEEEEEECCCCcee---cCCCceEe---cccccccCCcccCCEEEEcCCc
Confidence 578887653 43333344456667663 888988876542211 00000000 0001122 4578999987531
Q ss_pred ---CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 81 ---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 81 ---y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+.....+.+..||.... -.||+++.+|++
T Consensus 606 ~~~~~l~~~~~l~~~Lr~~~-------~~gK~IaAIC~G 637 (715)
T 1sy7_A 606 KAAETLSKNGRALHWIREAF-------GHLKAIGATGEA 637 (715)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred ccHhhhccCHHHHHHHHHHH-------hCCCEEEEECHH
Confidence 11222355667776653 258888877654
No 327
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=31.57 E-value=57 Score=25.33 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=23.2
Q ss_pred eEEEEEe-c--CcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYY-S--MYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~-S--~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
||.+|.+ | ..+.++++++++.. .|+++.+++-...
T Consensus 66 kv~~IlGgstsQrlTSKQavEElL~-----cGvev~IiNrkRi 103 (358)
T 2c1l_A 66 RVIAILGGSTSQRLSSRQVVEELLN-----RGVEVHIINRKRI 103 (358)
T ss_dssp EEEEEEECCSSSCCBBHHHHHHHHH-----TTCEEEEEECSSC
T ss_pred cEEEEEcccccccccHHHHHHHHHh-----cCCceEEeeeeee
Confidence 5655554 4 35677777766654 4899999986554
No 328
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=31.57 E-value=73 Score=20.77 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=23.9
Q ss_pred CCceEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVY-YSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy-~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+|||+-+ +|.. +...++...+.++. .+.++.++.+.
T Consensus 3 ~~~~ILv~~D~s~~--s~~al~~a~~la~~-~~a~l~ll~v~ 41 (138)
T 1q77_A 3 AMKVLLVLTDAYSD--CEKAITYAVNFSEK-LGAELDILAVL 41 (138)
T ss_dssp CCEEEEEEESTTCC--CHHHHHHHHHHHTT-TCCEEEEEEEC
T ss_pred cccEEEEEccCCHh--HHHHHHHHHHHHHH-cCCeEEEEEEe
Confidence 567888776 4443 34555555555554 36788888765
No 329
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=31.56 E-value=83 Score=21.42 Aligned_cols=39 Identities=21% Similarity=0.055 Sum_probs=25.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++||||... .+.++..+++...+.++. .+.++.++.+.+
T Consensus 5 ~~~ILv~vD-~s~~s~~al~~A~~la~~-~~a~l~ll~v~~ 43 (170)
T 2dum_A 5 FRKVLFPTD-FSEGAYRAVEVFEKRNKM-EVGEVILLHVID 43 (170)
T ss_dssp CSEEEEECC-SSHHHHHHHHHHHHHCCS-CCSEEEEEEEEE
T ss_pred cceEEEEec-CCHHHHHHHHHHHHHHHh-cCCEEEEEEEec
Confidence 357776552 234566777777776665 477888887654
No 330
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=31.49 E-value=62 Score=21.91 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=29.9
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+... ...+.++.++++-
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 128 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE----RGSDVIIMLVGNK 128 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEEC
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 45678999999988765433334455666655321 1256788777763
No 331
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=31.45 E-value=24 Score=27.64 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=14.1
Q ss_pred hhhhccCeEEEecccCC
Q 028847 66 NELAEADGILLGFPTRF 82 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~ 82 (203)
+.+.++|.||+..|...
T Consensus 79 e~~~~aDvVi~~vp~~~ 95 (312)
T 3qsg_A 79 EVAGECDVIFSLVTAQA 95 (312)
T ss_dssp HHHHHCSEEEECSCTTT
T ss_pred HHHhcCCEEEEecCchh
Confidence 45788999999999864
No 332
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=31.33 E-value=95 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.1
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
.+.+.++|.||+..|.+. +...++.+
T Consensus 58 ~~~~~~~d~vi~~v~~~~------~~~v~~~l 83 (291)
T 1ks9_A 58 PDFLATSDLLLVTLKAWQ------VSDAVKSL 83 (291)
T ss_dssp HHHHHTCSEEEECSCGGG------HHHHHHHH
T ss_pred ccccCCCCEEEEEecHHh------HHHHHHHH
Confidence 456788999999999974 34555554
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.26 E-value=38 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=14.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHh
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGA 27 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l 27 (203)
||++|+|+-.+.+|.|. +++.+++.+
T Consensus 3 ~m~~i~i~G~~GsGKsT-la~~La~~l 28 (175)
T 1via_A 3 LAKNIVFIGFMGSGKST-LARALAKDL 28 (175)
T ss_dssp --CCEEEECCTTSCHHH-HHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHc
Confidence 45444444334467655 688888877
No 334
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=30.79 E-value=41 Score=25.25 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=24.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEE
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIF 113 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~ 113 (203)
..+.++|.|||.||. .++.|++.+...+ ..+++.+++.+
T Consensus 54 ~~l~~~d~vifTS~~-------aV~~~~~~l~~~~--~~~~~~~i~aV 92 (254)
T 4es6_A 54 LDLDRYCAVVVVSKP-------AARLGLERLDRYW--PQPPQQTWCSV 92 (254)
T ss_dssp HTGGGCSEEEECSHH-------HHHHHHHHHHHHC--SSCCSCEEEES
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHHHhC--CCcccCEEEEE
Confidence 456889999999985 5667776653221 13344555544
No 335
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=30.65 E-value=1.8e+02 Score=24.20 Aligned_cols=64 Identities=14% Similarity=-0.029 Sum_probs=32.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||+|.=+| -.+...+++.|.+ .|.+|..++-.......+ ..... ....+.+...|.||-....
T Consensus 148 m~VLVTGat-----G~IG~~l~~~L~~-~G~~V~~l~R~~~~~~~v----~~d~~----~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 148 LTVAITGSR-----GLVGRALTAQLQT-GGHEVIQLVRKEPKPGKR----FWDPL----NPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CEEEEESTT-----SHHHHHHHHHHHH-TTCEEEEEESSSCCTTCE----ECCTT----SCCTTTTTTCSEEEECCCC
T ss_pred CEEEEECCC-----CHHHHHHHHHHHH-CCCEEEEEECCCCCccce----eeccc----chhHHhcCCCCEEEECCCC
Confidence 478764333 2344555555544 377887776543221100 00001 1123456789999976543
No 336
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=30.45 E-value=1.3e+02 Score=20.44 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=39.6
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
..+..+|++|+....-...--..++.|++.+... ...+.++.++++--.-..................++.++.
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 149 (183)
T ss_dssp TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEE
Confidence 4577899999988775533334556666665321 2357788888774221111111123333444555666553
No 337
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=30.42 E-value=55 Score=23.60 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=21.7
Q ss_pred CCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 106 AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 106 ~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
.+||+.++-+....-..... .+.-...|...|..+++..
T Consensus 106 ~~~pvvlaPamn~~m~~~p~-~~~Nl~~L~~~G~~iv~p~ 144 (181)
T 1g63_A 106 GYQKLFIFPNMNIRMWGNPF-LQKNIDLLKNNDVKVYSPD 144 (181)
T ss_dssp TGGGEEEEECCCHHHHTCHH-HHHHHHHHHTTTCEECCCE
T ss_pred cCCCEEEEeCCChhhcCCHH-HHHHHHHHHHCCCEEECCC
Confidence 46888877643211111112 2334567778899998653
No 338
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=30.38 E-value=1.4e+02 Score=20.90 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=32.6
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..++.++..+... ....++|+.++++-
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK 135 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNK 135 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEEEC
Confidence 34577999999998877654444566676665311 12468888888774
No 339
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=30.35 E-value=1.3e+02 Score=20.56 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=41.9
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
...+..+|++|+....-...-...++.|++.+... ....++++.++++--........ ...........++.++.
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 156 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY---CTRNDIVNMLVGNKIDKENREVD-RNEGLKFARKHSMLFIE 156 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC---CSCSCCEEEEEEECTTSSSCCSC-HHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCcEEEEEECCcCcccccC-HHHHHHHHHHcCCEEEE
Confidence 45678999999998775544444567777776421 12357787777764221111111 23334444556665543
No 340
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=30.35 E-value=2e+02 Score=22.72 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
+|+.|||.. +...+.+++.+.+.+++. |.++...
T Consensus 165 ~~vail~~~-~~~g~~~~~~~~~~~~~~-g~~vv~~ 198 (419)
T 3h5l_A 165 NKIAIITGP-GIYSVNIANAIRDGAGEY-GYDVSLF 198 (419)
T ss_dssp SEEEEEECS-SHHHHHHHHHHHHHGGGG-TCEEEEE
T ss_pred CEEEEEEcC-cchhHHHHHHHHHHHHHc-CCeEEEE
Confidence 578888743 555678899999999884 7676543
No 341
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=30.34 E-value=47 Score=26.02 Aligned_cols=37 Identities=5% Similarity=0.086 Sum_probs=20.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||||+++.++..+ .- .+..+.+.+.+.+|+++.++-.
T Consensus 5 mmkIl~v~~~~~~-~~-~~~~l~~~L~~~~g~~v~~~~~ 41 (376)
T 1v4v_A 5 MKRVVLAFGTRPE-AT-KMAPVYLALRGIPGLKPLVLLT 41 (376)
T ss_dssp CEEEEEEECSHHH-HH-HHHHHHHHHHTSTTEEEEEEEC
T ss_pred ceEEEEEEeccHH-HH-HHHHHHHHHHhCCCCceEEEEc
Confidence 5699999876422 11 2234455555522567666543
No 342
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=30.33 E-value=92 Score=25.12 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.8
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+||.|++|-.++ -+-.=+..+.+.|.+ .|.++..+++...
T Consensus 23 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~ 65 (386)
T 3e5n_A 23 IRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDKQ 65 (386)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred ceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECCC
Confidence 479999987643 355667788888987 4899999998753
No 343
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=30.28 E-value=86 Score=20.34 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=9.7
Q ss_pred ccCeEEEeccc
Q 028847 70 EADGILLGFPT 80 (203)
Q Consensus 70 ~aD~iiigsP~ 80 (203)
++|.||+|+.-
T Consensus 101 ~~dliV~G~~~ 111 (138)
T 3idf_A 101 DYNLLIIGSSE 111 (138)
T ss_dssp TCSEEEEECCT
T ss_pred cCCEEEEeCCC
Confidence 99999999864
No 344
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=30.23 E-value=50 Score=25.00 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|||.++.+|. .|.+..|-+.|.+.|++. |. +++|+.
T Consensus 20 mkiali~~~sqa~kN~~lKe~i~~~L~~~-G~--eV~D~G 56 (231)
T 3c5y_A 20 MKIALIIENSQAAKNAVVHEALTTVAEPL-GH--KVFNYG 56 (231)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHHHHHGGG-TC--EEEECC
T ss_pred ceEEEEecCCHhhhHHHHHHHHHHHHHHC-CC--EEEEeC
Confidence 3898888764 788899999999999985 75 567774
No 345
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=30.20 E-value=2e+02 Score=24.95 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=23.7
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCC
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 118 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
+.|++|+.+|+|..+- ..++ ...++|+++++..+.
T Consensus 79 ~vd~vi~~~~tf~~~~-----e~l~---------~~~~~Pvli~~~~~~ 113 (591)
T 1fui_A 79 NVGLTITVTPCWCYGS-----ETID---------MDPTRPKAIWGFNGT 113 (591)
T ss_dssp TEEEEEEEESSCCCHH-----HHSC---------CCSSSCEEEEECBCS
T ss_pred CCCEEEEEcCcCCchH-----HHHH---------hcCCCCEEEeCCCCC
Confidence 5689999999997632 2221 233999999865543
No 346
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=30.17 E-value=88 Score=25.27 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=30.8
Q ss_pred ceEEEEEecCc---chHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMY---GHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~---G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+||+|++|-.+ .-+-.=+..|.+.|.+ .|.++..+++...
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~ 80 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQA 80 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecCC
Confidence 37999998764 3355667888888887 4899999998753
No 347
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=30.12 E-value=15 Score=27.66 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||++|+|. |. |-.+...+++.|.+ .|.+|..++-
T Consensus 1 M~~~ilVt-Ga----tG~iG~~l~~~L~~-~g~~V~~~~r 34 (267)
T 3ay3_A 1 MLNRLLVT-GA----AGGVGSAIRPHLGT-LAHEVRLSDI 34 (267)
T ss_dssp CEEEEEEE-ST----TSHHHHHHGGGGGG-TEEEEEECCS
T ss_pred CCceEEEE-CC----CCHHHHHHHHHHHh-CCCEEEEEeC
Confidence 66666653 33 33466666666666 3666655443
No 348
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=30.07 E-value=91 Score=24.52 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=31.1
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+||.|++|-.++ -+-.=+..+.+.+.+ .|.++..+++...
T Consensus 4 ~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~~ 46 (346)
T 3se7_A 4 MKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITKS 46 (346)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECCC
Confidence 489999986543 466667788888887 4999999998753
No 349
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=30.04 E-value=50 Score=22.68 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=21.7
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCC
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~ 44 (203)
+.||++++ +.+++.-+.+.+ .|++++.+|+....
T Consensus 4 itiY~~p~C~~crkak~~L~~-----~gi~~~~idi~~~~ 38 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRN-----SGTEPTIILYLENP 38 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHH-----TTCCCEEECTTTSC
T ss_pred EEEEECCCChHHHHHHHHHHH-----cCCCEEEEECCCCC
Confidence 34677764 556654444433 48899999997644
No 350
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=29.93 E-value=1.6e+02 Score=23.29 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=42.0
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhcc-CCceEEEEEcCCCCch----hHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSE----DVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
+||+|+.--+ .+.|+.. +...+... ..++++++++.+-..+ .-+...+. +.+ ..+..++|++||
T Consensus 48 lkI~ILnlmp~k~~te~q---f~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~----~f~---~~~~~~~DglII 117 (312)
T 2h2w_A 48 LEILILNLMPDKIKTEIQ---LLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYT----TFS---AVKDRKFDGFII 117 (312)
T ss_dssp EEEEEECCCSSHHHHHHH---HHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCB----CGG---GTTTCCEEEEEE
T ss_pred ceEEEEeCCCCcCchHHH---HHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccC----Ccc---cccccCcCEEEE
Confidence 3899999765 3666643 34444332 2456666666542211 01110000 000 113467898877
Q ss_pred -ecccCCCC---cH--HHHHHHHHHh
Q 028847 77 -GFPTRFGM---MA--AQFKAFLDAT 96 (203)
Q Consensus 77 -gsP~y~~~---~~--~~lk~fld~~ 96 (203)
|+|+=... .| ..++.++++.
T Consensus 118 TGsP~~~~~~ed~~yw~el~~li~~~ 143 (312)
T 2h2w_A 118 TGAPVELLPFEEVDYWEELTEIMEWS 143 (312)
T ss_dssp CCCSCTTSCGGGSTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCchHHHHHHHHHHH
Confidence 57752211 11 5577888776
No 351
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=29.86 E-value=1.1e+02 Score=19.54 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.6
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEE
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKL 37 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~ 37 (203)
+|+.-|.+|. .||.+...+++.+..+.. |..++.
T Consensus 75 KK~mSvsFsd~~~~~K~~i~ei~kkykd~-GykvE~ 109 (111)
T 2jmk_A 75 KKLMSVSFSDIDENMKKVIKATAEKFKNK-GFKVET 109 (111)
T ss_dssp TTEEEEEECSCCTTHHHHHHHHHHHGGGG-CCEEEE
T ss_pred CeEEEEEeehhhhhHHHHHHHHHHHhhcC-Cceeec
Confidence 4566667775 699999999999999985 776653
No 352
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=29.73 E-value=89 Score=18.41 Aligned_cols=32 Identities=9% Similarity=-0.071 Sum_probs=18.3
Q ss_pred eEEEEEec-CcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYS-MYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S-~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+|. +|++ .-+.++++-..+ +.+ |++++.+++.
T Consensus 5 ~v~-ly~~~~Cp~C~~~~~~L-~~~----~i~~~~~~vd 37 (89)
T 3msz_A 5 KVK-IYTRNGCPYCVWAKQWF-EEN----NIAFDETIID 37 (89)
T ss_dssp CEE-EEECTTCHHHHHHHHHH-HHT----TCCCEEEECC
T ss_pred EEE-EEEcCCChhHHHHHHHH-HHc----CCCceEEEee
Confidence 555 4554 457777754444 332 6677777664
No 353
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=29.72 E-value=1.1e+02 Score=23.20 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=54.8
Q ss_pred CceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchh---HhhhcCCCC----CCCCCCCChhhhhccCe
Q 028847 2 ATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSED---VLGKMGAGP----KSDVPTITPNELAEADG 73 (203)
Q Consensus 2 m~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~---~~~~~~~~~----~~~~~~~~~~~l~~aD~ 73 (203)
|-++.++||++ .|-|..+.+.+...... |-.+-++.... +..+ +....+... -....+ ..+.+.++|.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~-D~Ryg~~i~sr~G~~~~a~~i~~~~d-i~~~~~~~dv 93 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAK-DTRYSSSFCTHDRNTMEALPACLLRD-VAQEALGVAV 93 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETT-CCCC-----------CEEEEESSGGG-GHHHHTTCSE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecC-CccchHHHHhhcCCeeEEEecCCHHH-HHHHhccCCE
Confidence 46889999995 79998888887776653 66777766322 1111 111000000 000001 1334567898
Q ss_pred EEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 74 ILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 74 iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
|+|==-.++.. +..+++.+. -.|+++.+.+-.
T Consensus 94 ViIDEaQF~~~----v~el~~~l~-------~~gi~VI~~GL~ 125 (234)
T 2orv_A 94 IGIDEGQFFPD----IVEFCEAMA-------NAGKTVIVAALD 125 (234)
T ss_dssp EEESSGGGCTT----HHHHHHHHH-------HTTCEEEEECCS
T ss_pred EEEEchhhhhh----HHHHHHHHH-------hCCCEEEEEecc
Confidence 88876665532 666666653 257777665543
No 354
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=29.71 E-value=89 Score=22.05 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=28.9
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCc--eEEEEEcCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGV--EAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~--~v~~~~l~~ 42 (203)
|+.||....+. -|..|.+-..+.+.+. |+ +++++.++-
T Consensus 15 ri~IV~arfn~~I~~~Ll~ga~~~l~~~-Gv~~~i~v~~VPG 55 (156)
T 1c2y_A 15 RFAIVVARFNEFVTRRLMEGALDTFKKY-SVNEDIDVVWVPG 55 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHT-TCCSCCEEEEESS
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc-CCCCceEEEECCc
Confidence 78888877654 4888999888888874 75 567777765
No 355
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=29.67 E-value=24 Score=25.75 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=34.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCC--CCCCC-CCC-ChhhhhccCeEEEecc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAG--PKSDV-PTI-TPNELAEADGILLGFP 79 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~--~~~~~-~~~-~~~~l~~aD~iiigsP 79 (203)
||+|+-+ | .+...+++.|.+ .|.++.++|-.....+......... ..+.. +.. ....+.++|.+|+.+|
T Consensus 2 ~iiIiG~---G---~~G~~la~~L~~-~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 2 KVIIIGG---E---TTAYYLARSMLS-RKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CEEEECC---H---HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred EEEEECC---C---HHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 7776542 3 244455555555 3788999886432221111111110 00111 111 1123678999999998
Q ss_pred c
Q 028847 80 T 80 (203)
Q Consensus 80 ~ 80 (203)
.
T Consensus 75 ~ 75 (218)
T 3l4b_C 75 R 75 (218)
T ss_dssp C
T ss_pred C
Confidence 6
No 356
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=29.63 E-value=1.5e+02 Score=20.92 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=44.0
Q ss_pred eEEEEEecC-----------cch--HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhc
Q 028847 4 KVYIVYYSM-----------YGH--VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE 70 (203)
Q Consensus 4 kilIiy~S~-----------~G~--T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (203)
||+|++|-. +|+ -+.+-+.+.+...+ .|++++.+.-+.. ..+++. ..+...+
T Consensus 8 ~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~E--GeLId~------------Ih~a~~~ 72 (156)
T 1gtz_A 8 PIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAA-HGGTVDFRQSNHE--GELVDW------------IHEARLN 72 (156)
T ss_dssp CEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHT-TTCCEEEEECSCH--HHHHHH------------HHHHHHH
T ss_pred eEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCCH--HHHHHH------------HHHhhhc
Confidence 799999884 243 34455566666666 4888888765432 111111 1234456
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
+|+|||=---|- +-|-.++..+..+.
T Consensus 73 ~dgiIINpgA~T-HtSvAlrDAl~~v~ 98 (156)
T 1gtz_A 73 HCGIVINPAAYS-HTSVAILDALNTCD 98 (156)
T ss_dssp CSEEEEECTTHH-HHCHHHHHHHHTST
T ss_pred CcEEEECchhhc-cccHHHHHHHHhcC
Confidence 899888655542 22334455554443
No 357
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=29.57 E-value=39 Score=24.70 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=32.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCC-CCChhhhhccCeEEEecccC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVP-TITPNELAEADGILLGFPTR 81 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~iiigsP~y 81 (203)
+||.|| | .|+ +...++..+.+ .|.++.+++-.....+.... . ... ....+.+.++|.||+++|..
T Consensus 29 ~~I~ii-G--~G~---~G~~la~~l~~-~g~~V~~~~r~~~~~~~~~~----~---g~~~~~~~~~~~~~DvVi~av~~~ 94 (215)
T 2vns_A 29 PKVGIL-G--SGD---FARSLATRLVG-SGFKVVVGSRNPKRTARLFP----S---AAQVTFQEEAVSSPEVIFVAVFRE 94 (215)
T ss_dssp CCEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESSHHHHHHHSB----T---TSEEEEHHHHTTSCSEEEECSCGG
T ss_pred CEEEEE-c--cCH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH----c---CCceecHHHHHhCCCEEEECCChH
Confidence 467765 3 332 34444555544 36778777653211111100 0 000 00124467899999999964
No 358
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=29.53 E-value=1.6e+02 Score=21.19 Aligned_cols=35 Identities=14% Similarity=-0.087 Sum_probs=20.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|.++|.||.+|.+- ...++.+++.+++ -|+++++.
T Consensus 11 m~~~V~IimGS~SD--~~v~~~a~~~L~~-~Gi~~ev~ 45 (174)
T 3kuu_A 11 AGVKIAIVMGSKSD--WATMQFAADVLTT-LNVPFHVE 45 (174)
T ss_dssp CCCCEEEEESSGGG--HHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCcEEEEECcHHH--HHHHHHHHHHHHH-cCCCEEEE
Confidence 33479999999642 3345555555555 36655433
No 359
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=29.52 E-value=2.3e+02 Score=23.01 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=17.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+|++|-++. ...+++.+. + .|+++.++...
T Consensus 192 ~V~viD~G~---k~ni~r~L~----~-~G~~v~vvp~~ 221 (379)
T 1a9x_B 192 HVVAYDFGA---KRNILRMLV----D-RGCRLTIVPAQ 221 (379)
T ss_dssp EEEEEESSC---CHHHHHHHH----H-TTEEEEEEETT
T ss_pred EEEEEECCC---hHHHHHHHH----H-CCCEEEEEecc
Confidence 677776643 233444443 3 37888887654
No 360
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=29.50 E-value=32 Score=28.26 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||+||+|+.. | .++..+++.+++. |+++..++-
T Consensus 1 m~k~ilI~g~---g---~~~~~~~~a~~~~-G~~vv~v~~ 33 (451)
T 1ulz_A 1 MVNKVLVANR---G---EIAVRIIRACKEL-GIPTVAIYN 33 (451)
T ss_dssp CCSSEEECCC---H---HHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CCceEEEECC---c---HHHHHHHHHHHHc-CCeEEEEec
Confidence 8889998752 2 2344455555553 888877764
No 361
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=29.31 E-value=67 Score=25.49 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=33.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|+++.|+.++.+ ..+|+.|++.+.-. -.++++...++-...- ...+.+...|.+|+.+
T Consensus 5 ~~~~~i~~g~~~---~~La~~ia~~lg~~-l~~~~~~~F~dGE~~v---------------~i~esvrg~dV~iiqs 62 (319)
T 3dah_A 5 HDGLMVFTGNAN---PALAQEVVKILGIP-LGKAMVSRFSDGEIQV---------------EIQENVRGKDVFVLQS 62 (319)
T ss_dssp -CCEEEEECSSC---HHHHHHHHHHHTSC-CCCEEEEECTTSCEEE---------------EECSCCBTCEEEEECC
T ss_pred CCceEEEECCCC---HHHHHHHHHHhCCc-eeeeEEEECCCCCEEE---------------EECCCcCCCeEEEEcc
Confidence 556777766543 57889998888642 2356665555421100 0124577788888865
No 362
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=29.25 E-value=21 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=25.4
Q ss_pred hhccCeEEEec-ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 68 LAEADGILLGF-PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 68 l~~aD~iiigs-P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|.||+-. +...... +.+..|+.+.. -+||.++.++++
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~-------~~g~~iaaIC~G 110 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCA-------AHGMALGGLWNG 110 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHH-------HHTCEEEEETTH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHH-------hhCCEEEEECHH
Confidence 56899999843 3222223 66777777663 247777776654
No 363
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.25 E-value=1.8e+02 Score=21.71 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=25.7
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
++|.+|..+. +.....+.+.+.+.+++. |+++.++.
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-g~~~~~~~ 41 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQAL-NVTVEYRG 41 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHc-CCEEEEeC
Confidence 3566666554 456778888898888884 88887643
No 364
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=29.13 E-value=1e+02 Score=24.56 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=10.4
Q ss_pred ccCeEEEecccC
Q 028847 70 EADGILLGFPTR 81 (203)
Q Consensus 70 ~aD~iiigsP~y 81 (203)
++|.|++++|..
T Consensus 83 ~~DvV~~atp~~ 94 (354)
T 1ys4_A 83 DVDIVFSALPSD 94 (354)
T ss_dssp TCCEEEECCCHH
T ss_pred CCCEEEECCCch
Confidence 799999999874
No 365
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=29.06 E-value=37 Score=26.85 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=24.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
||+++..+..|+...++. +++.|.+ .|.+|.++-.
T Consensus 3 rIl~~~~~~~gh~~~~~~-la~~L~~-~GheV~v~~~ 37 (391)
T 3tsa_A 3 RVLVVPLPYPTHLMAMVP-LCWALQA-SGHEVLIAAP 37 (391)
T ss_dssp EEEEECCSCHHHHHTTHH-HHHHHHH-TTCEEEEEEC
T ss_pred EEEEEcCCCcchhhhHHH-HHHHHHH-CCCEEEEecC
Confidence 899887776676555433 5566666 3889988753
No 366
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=29.05 E-value=1.3e+02 Score=26.17 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhcc-CeEEEecccC-CCCcHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEA-DGILLGFPTR-FGMMAAQFK 90 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-D~iiigsP~y-~~~~~~~lk 90 (203)
+|..-..|...++.|++ .|++++++|+....|-+.- ...+.+.+. ..||+.=--+ .+++-+.+.
T Consensus 506 ~G~~v~~al~Aa~~L~~-~Gi~v~Vidlr~l~PlD~e-------------~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~ 571 (616)
T 3mos_A 506 AGVTLHEALAAAELLKK-EKINIRVLDPFTIKPLDRK-------------LILDSARATKGRILTVEDHYYEGGIGEAVS 571 (616)
T ss_dssp CTHHHHHHHHHHHHHHT-TTCEEEEEECSEEESCCHH-------------HHHHHHHHTTTEEEEEEEEESTTSHHHHHH
T ss_pred eCHHHHHHHHHHHHHHh-cCCCEEEEEeCccCCCCHH-------------HHHHHHHhcCCEEEEEcCCCCCcCHHHHHH
Confidence 45566677777788877 4999999999865431100 012356677 7777765433 677877777
Q ss_pred HHHHH
Q 028847 91 AFLDA 95 (203)
Q Consensus 91 ~fld~ 95 (203)
.++..
T Consensus 572 ~~l~~ 576 (616)
T 3mos_A 572 SAVVG 576 (616)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 76654
No 367
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=29.04 E-value=35 Score=27.18 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=24.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|||+++.+...|+... +-.+++.|.+ .|.+|.++-..
T Consensus 21 MrIl~~~~~~~Gh~~~-~~~la~~L~~-~GheV~v~~~~ 57 (412)
T 3otg_A 21 MRVLFASLGTHGHTYP-LLPLATAARA-AGHEVTFATGE 57 (412)
T ss_dssp CEEEEECCSSHHHHGG-GHHHHHHHHH-TTCEEEEEECG
T ss_pred eEEEEEcCCCcccHHH-HHHHHHHHHH-CCCEEEEEccH
Confidence 4899887665666544 3345566666 38898887654
No 368
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=28.96 E-value=86 Score=23.23 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=26.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+++|+|..++.--+-...-.|++..++ |.+|.++.+.+
T Consensus 1 m~~vL~v~aHPDDe~l~~ggtia~~~~~--G~~v~vv~lT~ 39 (227)
T 1uan_A 1 MLDLLVVAPHPDDGELGCGGTLARAKAE--GLSTGILDLTR 39 (227)
T ss_dssp CEEEEEEESSTTHHHHHHHHHHHHHHHT--TCCEEEEEEEC
T ss_pred CceEEEEEeCCCcHHHhHHHHHHHHHhC--CCcEEEEEEcC
Confidence 4599999999864444444455544433 77888888864
No 369
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=28.95 E-value=84 Score=23.07 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=22.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|++|+.+|-|...|--..+|+.+++ .|+.|-+.+..
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~-----~G~~V~~~~r~ 36 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVE-----RGHQVSMMGRR 36 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEECC
Confidence 5457777777767755666655553 37777776654
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=28.90 E-value=47 Score=22.75 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=16.4
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHh
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGA 27 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l 27 (203)
|| ++++|.|.+ +|.|. +++.+++.+
T Consensus 1 m~-~~I~l~G~~GsGKsT-~a~~La~~l 26 (173)
T 1e6c_A 1 MT-EPIFMVGARGCGMTT-VGRELARAL 26 (173)
T ss_dssp CC-CCEEEESCTTSSHHH-HHHHHHHHH
T ss_pred CC-ceEEEECCCCCCHHH-HHHHHHHHh
Confidence 66 455555554 67665 678888877
No 371
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=28.82 E-value=1.5e+02 Score=20.96 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=28.5
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhc-cCCc---eEEEEEcCCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAAS-VEGV---EAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~-~~g~---~v~~~~l~~~ 43 (203)
|+.||....+. -|..|.+-..+.+.+ . |+ +++++.++-.
T Consensus 19 riaIV~arfn~~I~~~Ll~ga~~~l~~~~-Gv~~~~i~v~~VPGa 62 (159)
T 1kz1_A 19 RILIVHARGNLQAIEPLVKGAVETMIEKH-DVKLENIDIESVPGS 62 (159)
T ss_dssp CEEEEECCTTHHHHHHHHHHHHHHHHHHH-CCCGGGEEEEECSSG
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHHc-CCCccceEEEECCcH
Confidence 78888877654 488888888888876 5 54 4778888754
No 372
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=28.81 E-value=1.3e+02 Score=21.12 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=28.1
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCc---eEEEEEcCCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGV---EAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~---~v~~~~l~~~ 43 (203)
|+.||...-+. -|..|.+-..+.+.+. |+ +++++.++-.
T Consensus 13 ri~IV~arfn~~I~~~Ll~gA~~~l~~~-Gv~~~~i~v~~VPGa 55 (157)
T 2obx_A 13 RIAVVRARWHADIVDQCVSAFEAEMADI-GGDRFAVDVFDVPGA 55 (157)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHH-HTTSEEEEEEEESSG
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHc-CCCccceEEEECCcH
Confidence 78888877654 4888888888888774 54 4677777653
No 373
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=28.76 E-value=42 Score=27.39 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=28.5
Q ss_pred eEEEEEecCcc--hHHHHHHHHHHHhhcc-CCceEEEEEcCC
Q 028847 4 KVYIVYYSMYG--HVEKLAEEIQKGAASV-EGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~G--~T~~la~~i~~~l~~~-~g~~v~~~~l~~ 42 (203)
||+|--.|-.| +...++++|++++++. +++++..+.+.|
T Consensus 2 kiviApDsFKgsLsA~eaa~ai~~G~~~~~p~a~~~~~P~AD 43 (371)
T 1to6_A 2 KIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGD 43 (371)
T ss_dssp EEEECCCCBTTTBCHHHHHHHHHHHHHHHCTTCEEEECCCCS
T ss_pred cEEEEecCCCCCcCHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 89988888655 4788999999999875 455555555554
No 374
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=28.55 E-value=87 Score=21.06 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=25.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++||||-+. .+.++..+++...+.++. .+.++.++.+.+
T Consensus 4 ~~~~ILv~vD-~s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 43 (162)
T 1mjh_A 4 MYKKILYPTD-FSETAEIALKHVKAFKTL-KAEEVILLHVID 43 (162)
T ss_dssp CCCEEEEECC-SCHHHHHHHHHHHHTCCS-SCCEEEEEEEEE
T ss_pred ccceEEEEeC-CCHHHHHHHHHHHHHHhh-cCCeEEEEEEec
Confidence 4567776552 233466667776666655 477888887754
No 375
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=28.38 E-value=1.5e+02 Score=20.58 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=32.1
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..++.++..+.. .....++++.++++-
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK 139 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFANK 139 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEEC
Confidence 3467899999999877654433455666666531 113467888888874
No 376
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=28.37 E-value=2.1e+02 Score=22.14 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=22.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
++|.|||....+.. ..+.+.+.+.+ .|..+........
T Consensus 131 ~~vaii~~~d~~~~--~~~~~~~~~~~-~g~~v~~~~~~~~ 168 (389)
T 4gpa_A 131 NCFVFLYDTDRGYS--ILQAIMEKAGQ-NGWHVSAICVENF 168 (389)
T ss_dssp CEEEEEECSTTCSH--HHHHHHHHHHT-TTCEEEEEECTTC
T ss_pred cEEEEEEecchhhH--HHHHHHHHHHh-cCceEEEEeecCC
Confidence 47888886554432 23455566666 3777776665443
No 377
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=28.34 E-value=22 Score=26.13 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=28.1
Q ss_pred hhhhhccCeEEEecccCCC----CcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFG----MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~----~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+++.++|.||+..-.-.. .-.+.+..|+.+.. -+||.++.++++
T Consensus 69 ~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~-------~~g~~iaaIC~G 117 (209)
T 3er6_A 69 WQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELH-------LKGSKIVAIDTG 117 (209)
T ss_dssp GGGCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred ccccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 4456789999985432111 12566777777763 357888877764
No 378
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=28.30 E-value=2.1e+02 Score=22.35 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=23.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
+++.|||...+| ..+++.+.+.+++. |.++.....
T Consensus 129 ~~v~ii~d~~~g--~~~~~~~~~~~~~~-g~~v~~~~~ 163 (384)
T 3saj_A 129 QTFVYIYDADRG--LSVLQRVLDTAAEK-NWQVTAVNI 163 (384)
T ss_dssp CEEEEEECSTTC--SHHHHHHHHHHHHH-TCEEEEEEG
T ss_pred cEEEEEEeCchh--HHHHHHHHHHhhhc-CceEEEEEe
Confidence 578899855455 45677777777774 767665554
No 379
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=28.17 E-value=25 Score=23.15 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=11.8
Q ss_pred hhccCeEEEecccC
Q 028847 68 LAEADGILLGFPTR 81 (203)
Q Consensus 68 l~~aD~iiigsP~y 81 (203)
+.++|.||+.+|..
T Consensus 67 ~~~~d~vi~~~~~~ 80 (140)
T 1lss_A 67 IEDADMYIAVTGKE 80 (140)
T ss_dssp TTTCSEEEECCSCH
T ss_pred cccCCEEEEeeCCc
Confidence 56899999999864
No 380
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=28.16 E-value=45 Score=26.35 Aligned_cols=35 Identities=11% Similarity=-0.125 Sum_probs=17.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||++|+| .|... .+...+++.|.+ .|.+|..++-.
T Consensus 23 M~~~vlV-tGatG----~iG~~l~~~L~~-~g~~V~~~~r~ 57 (375)
T 1t2a_A 23 MRNVALI-TGITG----QDGSYLAEFLLE-KGYEVHGIVRR 57 (375)
T ss_dssp -CCEEEE-ETTTS----HHHHHHHHHHHH-TTCEEEEEECC
T ss_pred cCcEEEE-ECCCc----hHHHHHHHHHHH-CCCEEEEEECC
Confidence 5556665 33323 344444444444 37777776654
No 381
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=28.11 E-value=1.3e+02 Score=21.17 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=28.8
Q ss_pred ceEEEEEecCcc-hHHHHHHHHHHHhhccCCc---eEEEEEcCCC
Q 028847 3 TKVYIVYYSMYG-HVEKLAEEIQKGAASVEGV---EAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G-~T~~la~~i~~~l~~~~g~---~v~~~~l~~~ 43 (203)
.|+.||....+. -|..|.+-..+.+.+. |+ +++++.++-.
T Consensus 11 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~-gv~~~~i~v~~VPGa 54 (158)
T 1di0_A 11 FKIAFIQARWHADIVDEARKSFVAELAAK-TGGSVEVEIFDVPGA 54 (158)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHH-HTTSEEEEEEEESSG
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc-CCCccceEEEECCcH
Confidence 378988877654 4888888888888774 54 3677777653
No 382
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=28.07 E-value=97 Score=22.96 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 14 GHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 14 G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
.....+|+.|++.+++. |++|++..+.
T Consensus 138 ~~~~~~a~~iq~~l~~i-GI~v~i~~~~ 164 (259)
T 3pam_A 138 LEEEKVALAFQSNLSRL-GIHAEIRTVD 164 (259)
T ss_dssp HHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred chHHHHHHHHHHHHHHc-CCEEEEEecC
Confidence 56788999999999995 9999887654
No 383
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=28.03 E-value=42 Score=26.78 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=23.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|+||+++.....|+...++ .+++.|.+ .|.+|.++--
T Consensus 20 m~rIl~~~~~~~GHv~p~l-~La~~L~~-~Gh~V~v~~~ 56 (415)
T 3rsc_A 20 MAHLLIVNVASHGLILPTL-TVVTELVR-RGHRVSYVTA 56 (415)
T ss_dssp CCEEEEECCSCHHHHGGGH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEeCCCccccccHH-HHHHHHHH-CCCEEEEEeC
Confidence 4599887665567755443 34455555 3889988764
No 384
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=27.88 E-value=2.7e+02 Score=23.35 Aligned_cols=121 Identities=13% Similarity=0.172 Sum_probs=59.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhh----ccCeEEEec
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA----EADGILLGF 78 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~aD~iiigs 78 (203)
+||.||= . | .|...++..+.+ .|.+|.++|......+...+. ......-.+....+++. ++|.||+..
T Consensus 5 ~kIgiIG-l--G---~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~-g~~g~~i~~~~s~~e~v~~l~~aDvVil~V 76 (484)
T 4gwg_A 5 ADIALIG-L--A---VMGQNLILNMND-HGFVVCAFNRTVSKVDDFLAN-EAKGTKVVGAQSLKEMVSKLKKPRRIILLV 76 (484)
T ss_dssp BSEEEEC-C--S---HHHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHT-TTTTSSCEECSSHHHHHHTBCSSCEEEECS
T ss_pred CEEEEEC-h--h---HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhc-ccCCCceeccCCHHHHHhhccCCCEEEEec
Confidence 4777663 2 2 233344444444 378888887654322222211 00000000011233333 599999999
Q ss_pred ccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCC
Q 028847 79 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 79 P~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~ 146 (203)
|.- ..++.+++.+.. .++...+ +...+.. .......+.+.+...|..+++.++
T Consensus 77 p~~-----~~v~~vl~~l~~-----~L~~g~i--IId~st~---~~~~t~~~~~~l~~~Gi~fvd~pV 129 (484)
T 4gwg_A 77 KAG-----QAVDDFIEKLVP-----LLDTGDI--IIDGGNS---EYRDTTRRCRDLKAKGILFVGSGV 129 (484)
T ss_dssp CSS-----HHHHHHHHHHGG-----GCCTTCE--EEECSCC---CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCh-----HHHHHHHHHHHH-----hcCCCCE--EEEcCCC---CchHHHHHHHHHHhhccccccCCc
Confidence 873 356777777642 2322222 2233221 111134455677778888877654
No 385
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=27.86 E-value=60 Score=26.04 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=25.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||+|+.....|+...++. +++.|.+ .|.+|.++--.
T Consensus 2 rIli~~~gt~Ghv~p~~~-La~~L~~-~Gh~V~v~~~~ 37 (404)
T 3h4t_A 2 GVLITGCGSRGDTEPLVA-LAARLRE-LGADARMCLPP 37 (404)
T ss_dssp CEEEEEESSHHHHHHHHH-HHHHHHH-TTCCEEEEECG
T ss_pred eEEEEeCCCCccHHHHHH-HHHHHHH-CCCeEEEEeCH
Confidence 898886666788777665 5667776 48899887543
No 386
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=27.80 E-value=64 Score=22.94 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=19.9
Q ss_pred CceEEEEEecCcc---hHHHHHHHHHHHhhccCC
Q 028847 2 ATKVYIVYYSMYG---HVEKLAEEIQKGAASVEG 32 (203)
Q Consensus 2 m~kilIiy~S~~G---~T~~la~~i~~~l~~~~g 32 (203)
|++|.|+.+|..+ .-...|+.+.+.+.+. |
T Consensus 1 m~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~-g 33 (171)
T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLAEE-G 33 (171)
T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHHHHHHHT-T
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHC-C
Confidence 4567766555544 3567888888888773 5
No 387
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=27.70 E-value=52 Score=26.02 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=34.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCc-eEEEEEcCCCCchhH---hh-hcC-CCCCCCC-CCCChhhhhccCeEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDV---LG-KMG-AGPKSDV-PTITPNELAEADGIL 75 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~-~v~~~~l~~~~~~~~---~~-~~~-~~~~~~~-~~~~~~~l~~aD~ii 75 (203)
+||.||-+-.-|.+ +|..++. .|. ++.++|+.+...+.. +. ... ....... ...+.+.+.++|.||
T Consensus 15 ~kI~ViGaG~vG~~--iA~~la~-----~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI 87 (328)
T 2hjr_A 15 KKISIIGAGQIGST--IALLLGQ-----KDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVI 87 (328)
T ss_dssp CEEEEECCSHHHHH--HHHHHHH-----TTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHH--HHHHHHh-----CCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEE
Confidence 47877643223433 5554443 255 788888875433211 00 000 0000001 001246799999999
Q ss_pred Eecc
Q 028847 76 LGFP 79 (203)
Q Consensus 76 igsP 79 (203)
+..+
T Consensus 88 ~avg 91 (328)
T 2hjr_A 88 ITAG 91 (328)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 9983
No 388
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=27.55 E-value=1.2e+02 Score=25.49 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCCCC
Q 028847 104 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~~~ 147 (203)
.|.||++++++-. .. ...+...|...||.++..++.
T Consensus 329 ~l~GKrv~i~~~~-----~~---~~~l~~~L~ElGmevv~~gt~ 364 (483)
T 3pdi_A 329 RLEGKRVLLYTGG-----VK---SWSVVSALQDLGMKVVATGTK 364 (483)
T ss_dssp HHTTCEEEEECSS-----SC---HHHHHHHHHHHTCEEEEECBS
T ss_pred HhcCCEEEEECCC-----ch---HHHHHHHHHHCCCEEEEEecC
Confidence 5789999986321 11 233556778899999876544
No 389
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=27.54 E-value=86 Score=22.40 Aligned_cols=35 Identities=14% Similarity=-0.025 Sum_probs=20.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|..+|.||.+|.+- ...++.+++.+++ -|+..++.
T Consensus 4 m~p~V~IimgS~SD--~~v~~~a~~~l~~-~gi~~ev~ 38 (166)
T 3oow_A 4 MSVQVGVIMGSKSD--WSTMKECCDILDN-LGIGYECE 38 (166)
T ss_dssp -CEEEEEEESSGGG--HHHHHHHHHHHHH-TTCEEEEE
T ss_pred CCCeEEEEECcHHh--HHHHHHHHHHHHH-cCCCEEEE
Confidence 43589999999642 3345555555555 36655543
No 390
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=27.34 E-value=1.2e+02 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=20.7
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
+.+.++|.||++.|.+ .++.+++.+.
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~ 120 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMK 120 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHH
Confidence 4577899999999985 5777777775
No 391
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.31 E-value=1.9e+02 Score=21.40 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.5
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|.++..+. +.....+.+.+.+.+++ .|+++.+++...
T Consensus 10 ~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 48 (291)
T 3egc_A 10 VVGLIVSDIENVFFAEVASGVESEARH-KGYSVLLANTAE 48 (291)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 566666553 34577888889888888 488888887654
No 392
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=27.26 E-value=87 Score=26.23 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=32.1
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhcccccccCCC-CCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLA-GKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~-gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
+|.||+..|... .++..++.+.. .++ |+ + +...+. +.......+.+.+...|..+++.+
T Consensus 79 aDvVil~Vp~~~-----~v~~vl~~l~~-----~l~~g~-i--IId~s~---g~~~~t~~l~~~l~~~g~~~v~~p 138 (480)
T 2zyd_A 79 PRRILLMVKAGA-----GTDAAIDSLKP-----YLDKGD-I--IIDGGN---TFFQDTIRRNRELSAEGFNFIGTG 138 (480)
T ss_dssp SCEEEECSCSSS-----HHHHHHHHHGG-----GCCTTC-E--EEECSC---CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCHH-----HHHHHHHHHHh-----hcCCCC-E--EEECCC---CCHHHHHHHHHHHHHCCCCeeCCc
Confidence 999999999732 46666766642 232 33 2 222222 111113345566666677776544
No 393
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.21 E-value=68 Score=21.71 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=18.3
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
.++|.|.+.+-. ..-...++.+++.+.
T Consensus 53 ~~~d~v~lS~~~--~~~~~~~~~~i~~l~ 79 (137)
T 1ccw_A 53 TKADAILVSSLY--GQGEIDCKGLRQKCD 79 (137)
T ss_dssp HTCSEEEEEECS--STHHHHHTTHHHHHH
T ss_pred cCCCEEEEEecC--cCcHHHHHHHHHHHH
Confidence 456666665544 555667888998885
No 394
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=27.21 E-value=69 Score=26.27 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=36.6
Q ss_pred CCceEEEEEecCcch-----HHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEE
Q 028847 1 MATKVYIVYYSMYGH-----VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGIL 75 (203)
Q Consensus 1 mm~kilIiy~S~~G~-----T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 75 (203)
|+.||.+|-|-.-|- +.++.+++.+.. |+++++....- .-. .+. ...+..|+...+.++++|+++
T Consensus 22 M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~----g~~~~~~~~~~-G~~-~~~----~~G~~lp~~tl~~~~~~daiL 91 (390)
T 3u1h_A 22 MKKKIAVLPGDGIGPEVMEAAIEVLKAVAERF----GHEFEFEYGLI-GGA-AID----EAGTPLPEETLDVCRGSDAIL 91 (390)
T ss_dssp --CEEEEEEESTTHHHHHHHHHHHHHHHHHHH----SCCCEEEECCC-THH-HHH----SSSSSSCHHHHHHHHTSSEEE
T ss_pred ccceEEEECCCccCHHHHHHHHHHHHHHHHhc----CCCeEEEEEEc-CHH-HHH----hhCCcCCHHHHHHHHHCCEEE
Confidence 445889988876442 333444443332 44555544321 100 011 011223444567899999999
Q ss_pred Ee---cccC
Q 028847 76 LG---FPTR 81 (203)
Q Consensus 76 ig---sP~y 81 (203)
+| +|.|
T Consensus 92 ~Gavg~P~~ 100 (390)
T 3u1h_A 92 LGAVGGPKW 100 (390)
T ss_dssp EEECCCSTT
T ss_pred ECCcCCCCc
Confidence 86 6776
No 395
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=27.12 E-value=57 Score=26.04 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=34.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 78 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs 78 (203)
|+++.|+.+|.+ ..+|+.|++.+.-. -.++++...++-...- ...+.+...|.+|+.+
T Consensus 1 m~~~~if~g~~~---~~La~~ia~~lg~~-l~~~~~~~F~dGE~~v---------------~i~esvrg~dV~iiqs 58 (326)
T 3s5j_B 1 MPNIKIFSGSSH---QDLSQKIADRLGLE-LGKVVTKKFSNQETCV---------------EIGESVRGEDVYIVQS 58 (326)
T ss_dssp --CEEEEECSSC---CHHHHHHHHHTTCC-CCCEEEEECTTSCEEE---------------EECSCCTTCEEEEECC
T ss_pred CCceEEEECCCC---HHHHHHHHHHhCCc-eeeeEEeECCCCCEEE---------------EECCCcCCCcEEEEec
Confidence 457777776643 46889999888642 2255655555422110 0134677889998886
No 396
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=27.06 E-value=1e+02 Score=25.95 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=32.8
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhcccccccCCC-CCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecCC
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLA-GKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~-gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~~ 145 (203)
+|.||+..|.- ..++..++.+.. .++ |+. ++.++.+ .......+.+.+...|..+++.+
T Consensus 75 aDvVil~Vp~~-----~~v~~vl~~l~~-----~l~~g~i--IId~s~~----~~~~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 75 PRKVMLLVKAG-----APVDALINQIVP-----LLEKGDI--IIDGGNS----HFPDSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp SCEEEECCCSS-----HHHHHHHHHHGG-----GCCTTCE--EEECSCC----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEcCCh-----HHHHHHHHHHHH-----hCCCCCE--EEECCCC----ChhHHHHHHHHHHHcCCceeCCC
Confidence 99999999962 357777777642 232 332 2222221 11113445566766787776544
No 397
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=27.03 E-value=1.2e+02 Score=23.81 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=20.9
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
..+..+|.||..+..|....-...+++++...
T Consensus 69 ~~~~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~ 100 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQAGDEIAIGKDLADAAK 100 (352)
T ss_dssp HHHTTCSEEEECCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEEcCCCCCcHHHHHHHHHHHHHH
Confidence 34678999998777664333334477777763
No 398
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=27.00 E-value=88 Score=21.91 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=29.2
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..++.|++.+... ...++++.++++-
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK 147 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNK 147 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-CC
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEEC
Confidence 34678899999988776655445667777776421 2346777777663
No 399
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=26.87 E-value=63 Score=22.70 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=18.6
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhccCCceE
Q 028847 1 MATKVYIVYYSMYG--HVEKLAEEIQKGAASVEGVEA 35 (203)
Q Consensus 1 mm~kilIiy~S~~G--~T~~la~~i~~~l~~~~g~~v 35 (203)
|.|||. +.+|..| .-..+-+.+.+.|++. | +|
T Consensus 1 m~mkIY-lAGP~f~~~e~~~~~~~i~~~L~~~-G-~V 34 (152)
T 4fyk_A 1 MRRSVY-FCGSIRGGREDQALYARIVSRLRRY-G-KV 34 (152)
T ss_dssp --CEEE-EECCSTTCCTTHHHHHHHHHHHTTT-S-EE
T ss_pred CCceEE-EECCCCCcHHHHHHHHHHHHHHHHc-C-cc
Confidence 433554 3556544 3445678889999884 6 44
No 400
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=26.62 E-value=1.5e+02 Score=20.02 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=21.5
Q ss_pred CceEEEEE-ecCcch-HHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVY-YSMYGH-VEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy-~S~~G~-T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|++|+. .+|+|+ ...-+=.++..+.. .|.++.++-+.+
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a-~~~~v~Vff~~D 46 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAA-FDQDVCVLFLDD 46 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-GCCEEEEEECGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEEhH
Confidence 56777665 556764 22223333333333 256888776655
No 401
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=26.45 E-value=44 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=21.5
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
||+||||+.. | .++..+.+.+++. |+++..++...
T Consensus 5 ~~k~ILI~g~---g---~~~~~i~~a~~~~-G~~vv~v~~~~ 39 (461)
T 2dzd_A 5 RIRKVLVANR---G---EIAIRVFRACTEL-GIRTVAIYSKE 39 (461)
T ss_dssp CCSEEEECSC---H---HHHHHHHHHHHHH-TCEEEEEECGG
T ss_pred cCcEEEEECC---c---HHHHHHHHHHHHc-CCEEEEEECCc
Confidence 5678888732 2 1344555666663 88888777543
No 402
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=26.40 E-value=54 Score=24.42 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=20.5
Q ss_pred CceEEEEEecCcch---HHHHHHHHHHHhhccCCce
Q 028847 2 ATKVYIVYYSMYGH---VEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 2 m~kilIiy~S~~G~---T~~la~~i~~~l~~~~g~~ 34 (203)
|++|.|+.+|..++ -...|+.+.+.+.+. |+.
T Consensus 9 m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~-g~~ 43 (216)
T 1ydh_A 9 FRKICVFCGSHSGHREVFSDAAIELGNELVKR-KID 43 (216)
T ss_dssp CSEEEEECCSCCCSSHHHHHHHHHHHHHHHHT-TCE
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHC-CCE
Confidence 45677776777543 446777777777763 543
No 403
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=26.13 E-value=80 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.043 Sum_probs=24.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEA 35 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v 35 (203)
|+.||+- +.++...+++.+.+.+++. |+++
T Consensus 2 ki~ii~n-~~~~~~~~~~~l~~~l~~~-g~~v 31 (272)
T 2i2c_A 2 KYMITSK-GDEKSDLLRLNMIAGFGEY-DMEY 31 (272)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHHTTS-SCEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHC-CCEe
Confidence 7888876 5677888899999999884 7765
No 404
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=26.10 E-value=1.3e+02 Score=19.63 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=20.9
Q ss_pred EEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 6 YIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 6 lIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++||++++ +.+++.-+.+.+ .|++++.+|+..
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~-----~gi~y~~~di~~ 39 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLED-----HGIDYTFHDYKK 39 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-----HTCCEEEEEHHH
T ss_pred EEEEECCCChHHHHHHHHHHH-----cCCcEEEEeeeC
Confidence 44677765 666665444433 278899999864
No 405
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=26.01 E-value=99 Score=22.58 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=9.2
Q ss_pred hhhccCeEEEec
Q 028847 67 ELAEADGILLGF 78 (203)
Q Consensus 67 ~l~~aD~iiigs 78 (203)
++.++|+|||.-
T Consensus 57 ~l~~~Dglil~G 68 (219)
T 1q7r_A 57 QLEGLDGLVLPG 68 (219)
T ss_dssp GGTTCSEEEECC
T ss_pred HHhhCCEEEECC
Confidence 466899999953
No 406
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=25.96 E-value=1.6e+02 Score=20.19 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=46.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCC-chhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
|.+|+|+.++. -.+.+++.+...+.+. ..+..+++.... +........ ....++...|+|+|-+=.
T Consensus 1 Migiii~sHg~--~A~gl~~~~~~i~G~~--~~i~av~~~~~~~~~~~~~~i~---------~~i~~~~~~~gvlvLtDl 67 (150)
T 3ipr_A 1 MLGIVIATHGA--LSDGAKDAATVIMGAT--ENIETVNLNSGDDVQALGGQIK---------TAIENVQQGDGVLVMVDL 67 (150)
T ss_dssp CCEEEEEEETT--HHHHHHHHHHHHHSCC--CSEEEEEECTTCCHHHHHHHHH---------HHHHHHCSSSCEEEEESS
T ss_pred CCEEEEEECcH--HHHHHHHHHHHHcCCC--CCEEEEEecCCCCHHHHHHHHH---------HHHHhcCCCCCEEEEEeC
Confidence 35788777663 4455555555555431 257778876433 332222100 013445567899999999
Q ss_pred CCCCcHHHHHHHHH
Q 028847 81 RFGMMAAQFKAFLD 94 (203)
Q Consensus 81 y~~~~~~~lk~fld 94 (203)
|.|++.-....++.
T Consensus 68 ~GGSp~n~a~~~~~ 81 (150)
T 3ipr_A 68 LSASPYNQAVLVIN 81 (150)
T ss_dssp TTSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 99988766555443
No 407
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=25.74 E-value=76 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=24.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|+||+++.....|+...+. .+++.|.+ .|++|.++--
T Consensus 4 M~~il~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 40 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSL-GLVSELAR-RGHRITYVTT 40 (402)
T ss_dssp CCEEEEECCSSHHHHHHHH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEeCCCCcccccHH-HHHHHHHh-CCCEEEEEcC
Confidence 4588877655567765544 45566666 3889988764
No 408
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=25.70 E-value=3.1e+02 Score=23.30 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=40.7
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
.....||++|+. .+.+-..+..+...... .-.+..+..++|+++.+++. +.....+...+...|+.++..
T Consensus 304 ~~~~~vi~~tg~-~ge~~~~l~ria~~~h~---~~~~~~~~~vi~s~~~~~G~--~~~~~~~~~~l~~~g~~v~~~ 373 (562)
T 3bk2_A 304 PDHQVLILATGS-QGQPMSVLHRLAFEGHA---KMAIKPGDTVILSSSPIPGN--EEAVNRVINRLYALGAYVLYP 373 (562)
T ss_dssp CGGGEEEEECCT-TSCSHHHHHHHHTTCCS---SCCCCTTCEEEECSCCCTTC--HHHHHHHHHHHHHTTCEEECT
T ss_pred CCCCEEEEEcCC-CchhHHHHHhhhhcccc---cccCCCCCEEEEECCCCCCC--eEehhhhcCceeeCCCEEEEc
Confidence 345678999887 44443334444321110 11345566777777766542 333455677788889998754
No 409
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=25.59 E-value=1.1e+02 Score=23.73 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=23.9
Q ss_pred ceEEEEEecCcch---HHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGH---VEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~---T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||+|++|-.++- +-.=++.+.+.|.+ ++..+++..
T Consensus 4 ~~v~vl~gg~s~E~~vSl~s~~~v~~al~~----~v~~i~~~~ 42 (322)
T 2fb9_A 4 MRVLLIAGGVSPEHEVSLLSAEGVLRHIPF----PTDLAVIAQ 42 (322)
T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHHHCSS----CEEEEEECT
T ss_pred cEEEEEeCCCchhHHHHHHHHHHHHHHhcc----CeEEEEEcC
Confidence 4899999765432 22235777788853 688888754
No 410
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=25.50 E-value=58 Score=26.26 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=21.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|+||++|.|++.+.-. + .-+.+.+++.+++++.++--
T Consensus 25 m~ki~~v~Gtr~~~~~-~-a~li~~l~~~~~~~~~~~~t 61 (396)
T 3dzc_A 25 MKKVLIVFGTRPEAIK-M-APLVQQLCQDNRFVAKVCVT 61 (396)
T ss_dssp CEEEEEEECSHHHHHH-H-HHHHHHHHHCTTEEEEEEEC
T ss_pred CCeEEEEEeccHhHHH-H-HHHHHHHHhCCCCcEEEEEe
Confidence 4699999999865322 2 33344444423566655443
No 411
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=25.41 E-value=80 Score=25.28 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=23.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||+++.+...|+..-+.. +++.|.+ .|.+|.++--.
T Consensus 12 ~~~Il~~~~~~~GHv~p~l~-la~~L~~-~Gh~V~~~~~~ 49 (424)
T 2iya_A 12 PRHISFFNIPGHGHVNPSLG-IVQELVA-RGHRVSYAITD 49 (424)
T ss_dssp CCEEEEECCSCHHHHHHHHH-HHHHHHH-TTCEEEEEECG
T ss_pred cceEEEEeCCCCcccchHHH-HHHHHHH-CCCeEEEEeCH
Confidence 35888875444677655443 4455555 38888887544
No 412
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=25.28 E-value=61 Score=25.24 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=26.7
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+||-+++.|.+..+++.+++.+++.-|..|.+.+-.
T Consensus 12 ~ivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~n~~ 47 (301)
T 2qpq_A 12 IIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRP 47 (301)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred EEEccCCCcHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 355567789999999999998876446667776654
No 413
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=25.22 E-value=1e+02 Score=20.57 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=24.5
Q ss_pred EEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 7 IVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 7 Iiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||.+.......+.+.|..++++ .|+..++.....
T Consensus 9 ~i~~~~~~~~~~~l~~vl~GIEE-EGip~~v~~~~~ 43 (117)
T 1nbw_B 9 RLFYDPRGHHAGAINELCWGLEE-QGVPCQTITYDG 43 (117)
T ss_dssp EEEECTTSCCHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred EEEeCCCCCCHHHHHHHHhhhhh-cCCCeEEEEeCC
Confidence 34554444445677999999999 599888876654
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=25.10 E-value=1.4e+02 Score=20.54 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=28.9
Q ss_pred hhhhhccCeEEEecccCCCCcHHHH-HHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQF-KAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~l-k~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...-...+ +.|++.+.. ...+.++.++++-
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~~p~ilv~nK 136 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-----YIDTAKTVLVGLK 136 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HCTTSEEEEEEEC
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 3457789999998766543222222 445555431 3457888888874
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=25.09 E-value=1.6e+02 Score=19.89 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=40.1
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc-CCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST-GSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~-g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
..+..+|++|+....-...-...++.|++.+... .-.++++.++++- +-....... ...........++.++.
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGNKKDLDADREVT-FLEASRFAQENELMFLE 151 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSC-HHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccC-HHHHHHHHHHcCCEEEE
Confidence 3467899999998776544444556676655321 2357788888774 221111111 23334444556665543
No 416
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=25.08 E-value=1.2e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
+++++|.|...+..|+.+++-+.+. |+.+++..+..+
T Consensus 95 v~Ll~SDT~~G~l~AeiLke~l~~~-G~~v~~~~V~gL 131 (324)
T 3qyf_A 95 VFLYSTNTSNSQLAGEVIRDYLIEE-GIRSELVTVKTI 131 (324)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-TCEEEEEEECCC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHc-CCeeEEEEcCCC
Confidence 5688999999999999999999874 888888777654
No 417
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=24.87 E-value=1.1e+02 Score=24.31 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHhhccC-CceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEec-ccCCCCcHHHHH
Q 028847 13 YGHVEKLAEEIQKGAASVE-GVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF-PTRFGMMAAQFK 90 (203)
Q Consensus 13 ~G~T~~la~~i~~~l~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigs-P~y~~~~~~~lk 90 (203)
+|.+-..+...++.|++ . |+++.++++....|=+.- ...+.+.+++.+|+.= ..-.+++-..+.
T Consensus 227 ~G~~~~~a~~Aa~~L~~-~~Gi~v~vi~~~~l~P~d~~-------------~i~~~~~~~~~vv~vEe~~~~gg~g~~v~ 292 (342)
T 2bfd_B 227 WGTQVHVIREVASMAKE-KLGVSCEVIDLRTIIPWDVD-------------TICKSVIKTGRLLISHEAPLTGGFASEIS 292 (342)
T ss_dssp CTTHHHHHHHHHHHHHH-HHCCCEEEEECCEEESCCHH-------------HHHHHHHHHSCEEEEEEEESTTCHHHHHH
T ss_pred ECHHHHHHHHHHHHHHh-hcCCCEEEEeeeecCCCCHH-------------HHHHHHhcCCEEEEEEeCccCCcHHHHHH
Confidence 34555566666666665 4 788999998865331100 0123455666555543 222577767777
Q ss_pred HHHHH
Q 028847 91 AFLDA 95 (203)
Q Consensus 91 ~fld~ 95 (203)
.++..
T Consensus 293 ~~l~~ 297 (342)
T 2bfd_B 293 STVQE 297 (342)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77644
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=24.66 E-value=1.7e+02 Score=20.03 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=30.9
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhccccc-cc---CCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQ---QLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~-~~---~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..++.++..+..... .. ...++++.++++-
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK 136 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANK 136 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEEC
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEEC
Confidence 457789999999887665444455666665531100 00 1137888888774
No 419
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=24.61 E-value=1.5e+02 Score=19.45 Aligned_cols=49 Identities=6% Similarity=0.045 Sum_probs=29.4
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...-...++.|++.+... ....++++.++++-
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 117 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNK 117 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HCCSCCCEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCcCCCcEEEEEEC
Confidence 34577899999987655432223445555554311 13467888888774
No 420
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=24.53 E-value=1.1e+02 Score=22.52 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEecCc--chHHHHHHHHHHHhhccCCce
Q 028847 7 IVYYSMY--GHVEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 7 Iiy~S~~--G~T~~la~~i~~~l~~~~g~~ 34 (203)
|+|+... -||+..++.+.+.+++. |+.
T Consensus 25 i~YF~~~G~eNT~~tl~la~era~e~-~Ik 53 (206)
T 1t57_A 25 ICYFEEPGKENTERVLELVGERADQL-GIR 53 (206)
T ss_dssp EEEESSCSGGGHHHHHHHHHHHHHHH-TCC
T ss_pred EEEecCCCcccHHHHHHHHHHHHHHc-CCC
Confidence 6788864 58999999999998874 554
No 421
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=24.52 E-value=1.8e+02 Score=20.31 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=29.3
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCc---eEEEEEcCCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGV---EAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~---~v~~~~l~~~ 43 (203)
|+.||....+. -|..|.+-..+.+.+. |+ +++++.++-.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~-gv~~~~i~v~~VPGa 56 (154)
T 1rvv_A 14 KIGIVVGRFNDFITSKLLSGAEDALLRH-GVDTNDIDVAWVPGA 56 (154)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEESSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc-CCCccceEEEECCcH
Confidence 78888877654 4888998888888874 64 4678887754
No 422
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=24.52 E-value=63 Score=27.28 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred ceEEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhc-----CCCCCCCCC-CCCh-hhhhccCeE
Q 028847 3 TKVYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKM-----GAGPKSDVP-TITP-NELAEADGI 74 (203)
Q Consensus 3 ~kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~-----~~~~~~~~~-~~~~-~~l~~aD~i 74 (203)
+||.|| |..+ |.+..+|..++....- .+.++.++|+.....+...... ......... ..+. +.+.+||.|
T Consensus 4 ~KIaVI-GAGsVg~g~ala~~La~~~~l-~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~V 81 (480)
T 1obb_A 4 VKIGII-GAGSAVFSLRLVSDLCKTPGL-SGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 81 (480)
T ss_dssp CEEEEE-TTTCHHHHHHHHHHHHTCGGG-TTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEE-CCCchHHHHHHHHHHHhcCcC-CCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEE
Confidence 488876 4444 6677777777642211 2568999998753222111100 000000000 0123 578999999
Q ss_pred EEeccc
Q 028847 75 LLGFPT 80 (203)
Q Consensus 75 iigsP~ 80 (203)
|+..|+
T Consensus 82 Iiaagv 87 (480)
T 1obb_A 82 INTAMV 87 (480)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999975
No 423
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=24.34 E-value=1.9e+02 Score=20.38 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=29.0
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 115 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t 115 (203)
..+..+|++|+..-.-...-...++.|++.+... .-.+.++.++++
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~N 139 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGN 139 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 3567899999988765443333456677665321 234677777766
No 424
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=24.23 E-value=1.6e+02 Score=19.94 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=11.3
Q ss_pred hhccCeEEEecccC
Q 028847 68 LAEADGILLGFPTR 81 (203)
Q Consensus 68 l~~aD~iiigsP~y 81 (203)
-.++|.||+|+.-.
T Consensus 117 ~~~~DLIV~G~~g~ 130 (163)
T 1tq8_A 117 EEKADLLVVGNVGL 130 (163)
T ss_dssp HTTCSEEEEECCCC
T ss_pred hcCCCEEEECCCCC
Confidence 35899999999754
No 425
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=24.20 E-value=1.3e+02 Score=22.11 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|| |++.|.+... |.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~vi~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MA-RIIVVTSGKGGVGKTT-SSAAIATGLAQ-KGKKTVVIDFAI 41 (260)
T ss_dssp -C-EEEEEECSSTTSSHHH-HHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CC-eEEEEECCCCCCcHHH-HHHHHHHHHHh-CCCcEEEEECCC
Confidence 54 7777766654 4443 44455555555 377899999875
No 426
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=24.14 E-value=1.1e+02 Score=17.37 Aligned_cols=35 Identities=11% Similarity=0.303 Sum_probs=22.7
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+.+|++.-+.++.+...+.+...+. +.+++++.+.
T Consensus 4 v~f~a~wC~~C~~~~~~l~~~~~~~-~~~~~~~~v~ 38 (77)
T 1ilo_A 4 IQIYGTGCANCQMLEKNAREAVKEL-GIDAEFEKIK 38 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 3456666688888887776655542 3356676665
No 427
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=23.88 E-value=2.4e+02 Score=21.94 Aligned_cols=54 Identities=15% Similarity=0.022 Sum_probs=28.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCc-eEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+|.=+| -.+...+.+.|.+. |. +|...|.. .+.+.+ ...+.+.|.||-....
T Consensus 2 ~VlVtGat-----G~iG~~l~~~L~~~-g~~~v~~~d~~-~d~~~l----------------~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 2 NIVITGAK-----GFVGKNLKADLTST-TDHHIFEVHRQ-TKEEEL----------------ESALLKADFIVHLAGV 56 (369)
T ss_dssp EEEEETTT-----SHHHHHHHHHHHHH-CCCEEEECCTT-CCHHHH----------------HHHHHHCSEEEECCCS
T ss_pred EEEEECCC-----CHHHHHHHHHHHhC-CCCEEEEECCC-CCHHHH----------------HHHhccCCEEEECCcC
Confidence 77764333 33445555555443 55 66665552 222221 2345678998876543
No 428
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=23.79 E-value=2.7e+02 Score=21.94 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=22.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
++|.|||.+.+|. ..++.+.+.+++ .|..+.....
T Consensus 131 ~~vaii~d~~~g~--~~~~~~~~~~~~-~g~~v~~~~~ 165 (389)
T 3o21_A 131 EKFVYLYDTERGF--SVLQAIMEAAVQ-NNWQVTARSV 165 (389)
T ss_dssp CEEEEEECSTTCS--HHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CEEEEEEcCcHHH--HHHHHHHHHhhc-CCCeEEEEEe
Confidence 5788898555553 346667777776 3777765544
No 429
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.71 E-value=1.3e+02 Score=22.01 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 81 RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 81 y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
|+....+.++.|+. .+.|++++++-++.+...... .+....+.|.+.|+.+...
T Consensus 10 ~~~~~~~~~~~f~~---------~~~~~~i~~Ip~As~~~~~~~-~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 10 SFKDVVPLFTEFES---------NLQGKTVTFIPTASTVEEVTF-YVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp CGGGCHHHHHHHSC---------CCTTCEEEEECGGGGGCSCCH-HHHHHHHHHHHTTCEEEEC
T ss_pred cccchHHHHHHHHH---------HcCCCEEEEECCCCCCCCHHH-HHHHHHHHHHHcCCeEEEE
Confidence 34456666777652 456899998877654212222 2566778888899887654
No 430
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=23.65 E-value=61 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=18.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
|+|+|+| .|... -+...+++.|.+ .|.+|..++-
T Consensus 1 M~~~vlV-tGatG----~iG~~l~~~L~~-~g~~V~~~~r 34 (348)
T 1ek6_A 1 MAEKVLV-TGGAG----YIGSHTVLELLE-AGYLPVVIDN 34 (348)
T ss_dssp CCSEEEE-ETTTS----HHHHHHHHHHHH-TTCCEEEEEC
T ss_pred CCCEEEE-ECCCC----HHHHHHHHHHHH-CCCEEEEEec
Confidence 6556665 33323 344444444444 3777877764
No 431
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=23.57 E-value=1.7e+02 Score=19.43 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=31.3
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
-|.+++..|- ..+...++.+.. +|-+.. +.+.|.. . .++.+.....|+.+++
T Consensus 59 vDlavi~~p~------~~v~~~v~e~~~-------~g~k~v-~~~~G~~---~----~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 59 VDTVTLYINP------QNQLSEYNYILS-------LKPKRV-IFNPGTE---N----EELEEILSENGIEPVI 110 (122)
T ss_dssp CCEEEECSCH------HHHGGGHHHHHH-------HCCSEE-EECTTCC---C----HHHHHHHHHTTCEEEE
T ss_pred CCEEEEEeCH------HHHHHHHHHHHh-------cCCCEE-EECCCCC---h----HHHHHHHHHcCCeEEC
Confidence 6999999875 444445555421 233343 4444431 1 3466788889999996
No 432
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=23.52 E-value=73 Score=25.12 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=15.5
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHH
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld 94 (203)
.+.|+|++++|.... ...++..++
T Consensus 65 ~~~D~V~i~tp~~~h--~~~~~~al~ 88 (354)
T 3db2_A 65 EDVEMVIITVPNDKH--AEVIEQCAR 88 (354)
T ss_dssp SSCCEEEECSCTTSH--HHHHHHHHH
T ss_pred CCCCEEEEeCChHHH--HHHHHHHHH
Confidence 368999999999543 333344444
No 433
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=23.50 E-value=2.7e+02 Score=21.83 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=18.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHh
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGA 27 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l 27 (203)
.++||+....--+..+++.+.+..
T Consensus 23 m~~iV~S~~DpAs~~i~~~L~~~~ 46 (298)
T 2gfq_A 23 MKVIMTTKVDKASMNIMNKLIENF 46 (298)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHHS
T ss_pred EEEEEEeCCCchhHHHHHHHHHhc
Confidence 377788777777788888888775
No 434
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=23.47 E-value=1.3e+02 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=26.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+.++|.+.......+|+.|++.+++. |+++++..+.
T Consensus 362 l~l~~~~~~~~~~~~a~~iq~~l~~i-GI~v~i~~~~ 397 (528)
T 3ry3_A 362 ITLWYTSGDTTRRDLAQALRSMLKPI-GIDVDLKSGS 397 (528)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHGGG-TCEEEEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHc-CCEEEEEecC
Confidence 45555554444568999999999985 9999887543
No 435
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=23.40 E-value=65 Score=22.51 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=31.1
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...-...++.|++.+... ...++++.++++-
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilV~NK 140 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNK 140 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 4568899999988776544444456666665321 3357888888774
No 436
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=23.39 E-value=1.3e+02 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=26.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+.+++.+.......+|+.|++.+++. |+++++..+.
T Consensus 330 l~l~~~~~~~~~~~~a~~iq~~l~~i-GI~v~i~~~~ 365 (486)
T 3rqt_A 330 IKLITYDGRPELSKIAQVLQSDAKKA-NIEIDIKSVD 365 (486)
T ss_dssp EEEEECSSSTHHHHHHHHHHHHHHTT-TEEEEEEECS
T ss_pred EEEEecCCCccHHHHHHHHHHHHHhc-CCEEEEEEec
Confidence 33444343445678999999999985 9999987764
No 437
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=23.30 E-value=1.7e+02 Score=22.91 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=40.7
Q ss_pred ceEEEEEecCc-chHHHHHHHHHHHhhcc-CCceEEEEEcCCCCchhHhhhcCCCCCCCCCCC--Chhh--hhccCeEEE
Q 028847 3 TKVYIVYYSMY-GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI--TPNE--LAEADGILL 76 (203)
Q Consensus 3 ~kilIiy~S~~-G~T~~la~~i~~~l~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--l~~aD~iii 76 (203)
+||+|+.--+. +.|+. .+...+... ..++++++++.+-..+.. ..+..... ..++ ..++|++||
T Consensus 36 lkI~ILnlmp~k~~te~---qf~rlL~~~~~qv~v~~~~~~~~~~~~~-------~~~hl~~~y~~f~~~~~~~~DglII 105 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEA---QLLRLIGNTPLQLDVHLLHMESHLSRNV-------AQEHLTSFYKTFRDIENEKFDGLII 105 (301)
T ss_dssp EEEEEECCCSSHHHHHH---HHHHHHTCSSSCEEEEEECCCC-------------------CCEECHHHHTTSCEEEEEE
T ss_pred ceEEEEeCCCCcCchHH---HHHHHhcCCCCcEEEEEEeccCCCCCCc-------cHHHHhhcccCcccccccccCEEEE
Confidence 38999997653 56663 444555442 235666666653221100 00011110 1222 467898877
Q ss_pred -ecccCCCC---cH--HHHHHHHHHh
Q 028847 77 -GFPTRFGM---MA--AQFKAFLDAT 96 (203)
Q Consensus 77 -gsP~y~~~---~~--~~lk~fld~~ 96 (203)
|+|+=... .| ..++.++++.
T Consensus 106 TGap~~~~~~ed~~yw~el~~li~~~ 131 (301)
T 2vdj_A 106 TGAPVETLSFEEVDYWEELKRIMEYS 131 (301)
T ss_dssp CCCTTTTSCGGGSTTHHHHHHHHHHH
T ss_pred CCCCCcCCCcccCchHHHHHHHHHHH
Confidence 57752211 11 5577788776
No 438
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=23.26 E-value=54 Score=26.70 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=21.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|.|||+||=+...|-+ .|..+++.. .+++|.+++-.+
T Consensus 1 M~K~VvIIGgG~aGl~--aA~~L~~~~---~~~~VtlI~~~~ 37 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGIA--TAYNLRNLM---PDLKITLISDRP 37 (430)
T ss_dssp -CCEEEEECSSHHHHH--HHHHHHHHC---TTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHH--HHHHHhccC---cCCeEEEEcCCC
Confidence 6556777655555533 355555443 256899988655
No 439
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=23.19 E-value=2e+02 Score=20.30 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCceEEEEE-ecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchh---------HhhhcCCCCCCCCCCCChhhhh
Q 028847 1 MATKVYIVY-YSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSED---------VLGKMGAGPKSDVPTITPNELA 69 (203)
Q Consensus 1 mm~kilIiy-~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~ 69 (203)
|| ||-||. |.. .+.-....+...+.+.. -+.++++.+.+..... ...... +.....+.
T Consensus 4 ~M-ki~ii~VGk~k~~~~~~~i~eY~kRl~~--~~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg--------~~il~~i~ 72 (163)
T 4fak_A 4 FM-KITILAVGKLKEKYWKQAIAEYEKRLGP--YTKIDIIEVPDEKAPENMSDKEIEQVKEKEG--------QRILAKIK 72 (163)
T ss_dssp CC-EEEEEEESCCCCHHHHHHHHHHHHHHTT--TCEEEEEEECCCCCCTTCCHHHHHHHHHHHH--------HHHHHTCC
T ss_pred cc-EEEEEEecCcCcHHHHHHHHHHHHHccC--cCCeEEEEecccccccccchhhHHHHHHHHH--------HHHHHhCC
Confidence 55 887765 443 45556667777777765 4588888888743210 000000 00012333
Q ss_pred ccCeEEEecccCCCCc-HHHHHHHHHHhcccccccCCCCCeEEEEEccCCC
Q 028847 70 EADGILLGFPTRFGMM-AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 119 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~-~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~ 119 (203)
.-|.+|.-.+- .-.+ |..+-.+|+++. ..|+.-.+|..+|..
T Consensus 73 ~~~~vI~LD~~-Gk~~sS~~fA~~l~~~~-------~~g~~~i~FvIGG~~ 115 (163)
T 4fak_A 73 PQSTVITLEIQ-GKMLSSEGLAQELNQRM-------TQGQSDFVFVIGGSN 115 (163)
T ss_dssp TTSEEEEEEEE-EEECCHHHHHHHHHHHH-------HTTCCEEEEEECBTT
T ss_pred CCCEEEEEcCC-CCcCCHHHHHHHHHHHH-------hcCCcceEEEEECCC
Confidence 44555554433 2223 567778887763 457555557777653
No 440
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=23.16 E-value=74 Score=21.45 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred cCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 71 ADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
-|.|||||-.+...+|+.++.+|...
T Consensus 69 pevliiGtG~~~~~l~p~~~~~l~~~ 94 (128)
T 2fi9_A 69 IEVLLIGTGVELLRLPEELRVLLWEK 94 (128)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHc
Confidence 79999999999989999999888764
No 441
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=23.09 E-value=60 Score=25.47 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.6
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+||-+++.|.+..+++.+++.+++.-|..+.+.+..
T Consensus 21 liVp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~p 56 (312)
T 2f5x_A 21 MVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKG 56 (312)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHHHSSCEEEEECC
T ss_pred EEEeeCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 455577788999999998888876446677776654
No 442
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=23.07 E-value=1.1e+02 Score=24.37 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=34.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
++.||+.|..| ..+|+.|++.+... +.++-.++ . ... ...+.+.++|.+||...+
T Consensus 10 ~~Aiia~T~~G--~~lA~rl~~~l~~~-~~~~~~~~--~--~~~---------------~~~~~f~~~d~iIfI~A~ 64 (336)
T 3eeq_A 10 GICIISASEDA--FSAGETIKEKLKSF-EIPVVHYR--Y--KDA---------------EIETIWKCYDAIVFVMAL 64 (336)
T ss_dssp CEEEEECSHHH--HHHHHHHHHHHHHT-TCCEEEEE--G--GGC---------------CHHHHTTTCSEEEEESCH
T ss_pred ceEEEEEChHH--HHHHHHHHHhcCcC-CceEEecC--C--HHH---------------HHHHHhcCCCeEEEEeCh
Confidence 67888887765 77899999888641 33433221 1 111 124567889999988764
No 443
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=22.99 E-value=1.6e+02 Score=20.22 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=22.8
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
++++|.|.+ +|.|- +++.+++.+.. .|..+..++.
T Consensus 2 ~~I~i~G~~GsGKsT-~~~~L~~~l~~-~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKST-VLAKVKEILDN-QGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHH-HHHHHHHHHHT-TTCCEEEEEH
T ss_pred eEEEEECCCCCCHHH-HHHHHHHHHHh-cCceEEEEEC
Confidence 355555554 67664 68888888876 3666777653
No 444
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=22.89 E-value=1.3e+02 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+.+++.+.......+|+.|++.+++. |+++++..+..
T Consensus 332 l~l~~~~~~~~~~~~a~~i~~~l~~i-GI~v~i~~~~~ 368 (496)
T 3t66_A 332 FTVLTYGSRAELPLIAQVFQSNAKQI-GIEVEIRQIEV 368 (496)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHT-TCEEEEEECSS
T ss_pred EEEEecCCCccHHHHHHHHHHHHHhc-CCEEEEEEecc
Confidence 44445444445678999999999985 99999877653
No 445
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=22.86 E-value=69 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.4
Q ss_pred hhhh-ccCeEEEecccC
Q 028847 66 NELA-EADGILLGFPTR 81 (203)
Q Consensus 66 ~~l~-~aD~iiigsP~y 81 (203)
+.+. ++|.||+++|..
T Consensus 57 ~~~~~~aDvVilavp~~ 73 (281)
T 2g5c_A 57 KVEDFSPDFVMLSSPVR 73 (281)
T ss_dssp GGGGTCCSEEEECSCHH
T ss_pred HHhcCCCCEEEEcCCHH
Confidence 3566 899999999986
No 446
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=22.85 E-value=2e+02 Score=20.12 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=29.3
Q ss_pred eEEEEEecCcc-hHHHHHHHHHHHhhccCCc---eEEEEEcCCC
Q 028847 4 KVYIVYYSMYG-HVEKLAEEIQKGAASVEGV---EAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G-~T~~la~~i~~~l~~~~g~---~v~~~~l~~~ 43 (203)
|+.||....+. -|..|.+-..+.+.+. |+ +++++.++-.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~-gv~~~~i~v~~VPGa 56 (154)
T 1hqk_A 14 RFGIVASRFNHALVDRLVEGAIDCIVRH-GGREEDITLVRVPGS 56 (154)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEESSG
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHc-CCCccceEEEECCcH
Confidence 78888877654 4888998888888874 64 4678887754
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=22.72 E-value=1.6e+02 Score=20.62 Aligned_cols=47 Identities=6% Similarity=0.026 Sum_probs=29.4
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..++.|++.+... ...+.++.++++-
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK 143 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY----AGSNIVQLLIGNK 143 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 4577899999987764432233455666665321 2357788887764
No 448
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=22.70 E-value=2e+02 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=17.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKL 37 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~ 37 (203)
||.|++-...- ++.+.+.+++. |+++.+
T Consensus 31 ki~iv~~~~~~-----~~~l~~~L~~~-g~~v~~ 58 (278)
T 1z0s_A 31 RAAVVYKTDGH-----VKRIEEALKRL-EVEVEL 58 (278)
T ss_dssp EEEEEESSSTT-----HHHHHHHHHHT-TCEEEE
T ss_pred EEEEEeCCcHH-----HHHHHHHHHHC-CCEEEE
Confidence 67777643222 67777777774 877654
No 449
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=22.68 E-value=34 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.085 Sum_probs=20.2
Q ss_pred ccCeEEEecccCCCC-cHHHHHHHHHHhc
Q 028847 70 EADGILLGFPTRFGM-MAAQFKAFLDATG 97 (203)
Q Consensus 70 ~aD~iiigsP~y~~~-~~~~lk~fld~~~ 97 (203)
.+|.+|+|+|+|... +...++.+.+.+.
T Consensus 189 Gad~~VvG~~I~~a~dp~~a~~~~~~~~~ 217 (221)
T 3exr_A 189 DVFTFIAGRGITEAKNPAGAARAFKDEIK 217 (221)
T ss_dssp CCSEEEECHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCEEEECchhhCCCCHHHHHHHHHHHHH
Confidence 478999999999754 5555666665553
No 450
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=22.59 E-value=1e+02 Score=24.10 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=30.9
Q ss_pred ceEEEEEecCc-chHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSMY-GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~~-G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|.. | +-+|..+. . .|+.|.+.+-...+ ..+.+.+||.||-++|.
T Consensus 161 k~vvVvGrs~iVG--~p~A~lL~----~-~gAtVtv~h~~t~~-------------------L~~~~~~ADIVI~Avg~ 213 (285)
T 3p2o_A 161 KDAVIIGASNIVG--RPMATMLL----N-AGATVSVCHIKTKD-------------------LSLYTRQADLIIVAAGC 213 (285)
T ss_dssp CEEEEECCCTTTH--HHHHHHHH----H-TTCEEEEECTTCSC-------------------HHHHHTTCSEEEECSSC
T ss_pred CEEEEECCCchHH--HHHHHHHH----H-CCCeEEEEeCCchh-------------------HHHHhhcCCEEEECCCC
Confidence 35666665642 4 33343333 2 26778776543211 24568999999999985
No 451
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=22.53 E-value=1.2e+02 Score=23.64 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=10.7
Q ss_pred ccCeEEEecccCC
Q 028847 70 EADGILLGFPTRF 82 (203)
Q Consensus 70 ~aD~iiigsP~y~ 82 (203)
+.|+|++++|...
T Consensus 66 ~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 66 NVDAVLVTSWGPA 78 (344)
T ss_dssp TCCEEEECSCGGG
T ss_pred CCCEEEECCCchh
Confidence 3799999999854
No 452
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=22.29 E-value=1.5e+02 Score=18.88 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCceEEEEEecCcch---HHHHHHHHHHHhh
Q 028847 1 MATKVYIVYYSMYGH---VEKLAEEIQKGAA 28 (203)
Q Consensus 1 mm~kilIiy~S~~G~---T~~la~~i~~~l~ 28 (203)
||.+|.|.|.+.-|. ...+++.+...+.
T Consensus 1 ~~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp 31 (96)
T 2npb_A 1 MALAVRVVYSGACGYKPKYLQLKEKLEHEFP 31 (96)
T ss_dssp CCEEEEEECCCCSCHHHHHHHHHHHHHHHSB
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 777999999887543 5555666666554
No 453
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=22.26 E-value=1.6e+02 Score=21.24 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=23.7
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|| |++.|.+... |.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~~i~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (237)
T 1g3q_A 1 MG-RIISIVSGKGGTGKTT-VTANLSVALGD-RGRKVLAVDGDL 41 (237)
T ss_dssp CC-EEEEEECSSTTSSHHH-HHHHHHHHHHH-TTCCEEEEECCT
T ss_pred Cc-eEEEEecCCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCCC
Confidence 54 7766665553 4444 34445555554 377899999864
No 454
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=22.22 E-value=65 Score=25.31 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=26.5
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 6 YIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 6 lIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+|+-+++.|.+..+++.+++.+++.-|..|.+.+..
T Consensus 23 iivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~p 58 (314)
T 2dvz_A 23 VIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKG 58 (314)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred EEEccCCccHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 455577788999899998888876436677776654
No 455
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=22.11 E-value=1.8e+02 Score=20.51 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEE
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLW 38 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~ 38 (203)
|..++.+++|.+ .|-|..+.+.+...... |..+-++
T Consensus 1 ~~g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~ 37 (184)
T 2orw_A 1 MSGKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVF 37 (184)
T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEE
Confidence 434688899996 79988887777665543 4455444
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=22.10 E-value=80 Score=21.32 Aligned_cols=51 Identities=12% Similarity=-0.041 Sum_probs=30.6
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...-...++.|+..+..........++++.++++-
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence 356789999998776554433445666665532111112367888888774
No 457
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.08 E-value=1.4e+02 Score=23.21 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=28.6
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEE
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 114 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~ 114 (203)
..+|++++.+|-|+.--...+..|+..+. +-.+.|+.+.-
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va------~a~~lPiilYn 148 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVA------DATELPMLLYD 148 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHH------TSCSSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH------HhcCCCEEEEe
Confidence 47999999999998766677777887774 22255666553
No 458
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=22.06 E-value=68 Score=25.31 Aligned_cols=35 Identities=9% Similarity=-0.185 Sum_probs=17.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
||++|+| .|... -+...+++.|.+ .|.+|..++-.
T Consensus 27 M~k~vlV-tGatG----~IG~~l~~~L~~-~g~~V~~~~r~ 61 (381)
T 1n7h_A 27 PRKIALI-TGITG----QDGSYLTEFLLG-KGYEVHGLIRR 61 (381)
T ss_dssp -CCEEEE-ETTTS----HHHHHHHHHHHH-TTCEEEEEECC
T ss_pred hCCeEEE-EcCCc----hHHHHHHHHHHH-CCCEEEEEecC
Confidence 4446665 33322 344444544544 37777776543
No 459
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=21.89 E-value=1.6e+02 Score=23.54 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=29.3
Q ss_pred ceEEEEEecCc---chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMY---GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~---G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+||.||+|-.+ --+-.=|..+.+.|.+ .+.++..+++..
T Consensus 11 ~~v~vl~GG~S~E~~vS~~sa~~v~~~l~~-~~~~v~~i~i~~ 52 (373)
T 3lwb_A 11 VRVAVVFGGRSNEHAISCVSAGSILRNLDS-RRFDVIAVGITP 52 (373)
T ss_dssp EEEEEEEEC-----CHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred cEEEEEecCCCCChhhHHHHHHHHHHHhhh-cCceEEEEEecC
Confidence 47999999654 3467778888888877 488898888875
No 460
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.89 E-value=2.8e+02 Score=21.83 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=23.0
Q ss_pred CCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEecC
Q 028847 105 LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 144 (203)
Q Consensus 105 l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~~ 144 (203)
-+|.++++++.++.........+....+.|+.+|++++-.
T Consensus 10 ~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~ 49 (331)
T 4e5s_A 10 KKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFS 49 (331)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEC
Confidence 3577777776665422111233555566777778877643
No 461
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=21.75 E-value=82 Score=21.41 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=24.0
Q ss_pred ccCeEEEecccCCCCcHHHHHHHHHHh
Q 028847 70 EADGILLGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~lk~fld~~ 96 (203)
+-|.|||||-.+...+|+.++.+|...
T Consensus 64 ~pevliiGTG~~~~~l~p~~~~~l~~~ 90 (132)
T 2gm2_A 64 NPAVILLGTGERQQFPSTDVLAACLTR 90 (132)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCcCCHHHHHHHHHc
Confidence 489999999999889999999888765
No 462
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=21.72 E-value=1.3e+02 Score=17.37 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=19.8
Q ss_pred EEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 7 IVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 7 Iiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
++|+++ .++++++...+.+ . |++++.+++..
T Consensus 4 ~~y~~~~C~~C~~~~~~l~~-~----~i~~~~~~i~~ 35 (82)
T 1fov_A 4 EIYTKETCPYCHRAKALLSS-K----GVSFQELPIDG 35 (82)
T ss_dssp EEEECSSCHHHHHHHHHHHH-H----TCCCEEEECTT
T ss_pred EEEECCCChhHHHHHHHHHH-C----CCCcEEEECCC
Confidence 345554 5778876655543 2 66788888864
No 463
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.67 E-value=2.4e+02 Score=20.63 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=27.7
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
+|.++..+. +.....+.+.+.+.+++ .|.++.+.+...
T Consensus 9 ~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~ 47 (276)
T 3jy6_A 9 LIAVIVANIDDYFSTELFKGISSILES-RGYIGVLFDANA 47 (276)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 566666554 44577888999999988 488888877654
No 464
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.65 E-value=89 Score=21.57 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 1 MATKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 1 mm~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+.++++|.|-+ +|.|- +++.+++.+.. .|++..++++.
T Consensus 1 M~~~~I~i~G~~GsGKsT-~~~~L~~~l~~-~g~~~~~i~~~ 40 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTT-SSQLAMDNLRK-EGVNYKMVSFG 40 (192)
T ss_dssp --CCEEEEECCTTSCHHH-HHHHHHHHHHT-TTCCCEEEEHH
T ss_pred CCCeEEEEECCCCCCHHH-HHHHHHHHHHh-cCcceEEEehH
Confidence 433566666665 67665 68888888876 36556777654
No 465
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=21.58 E-value=1.5e+02 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=22.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
.|+.+|-|...|--..+++.+++ .|..|-+.+...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~-----~G~~V~~~~r~~ 36 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLE-----AGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 46777777766655555555543 377887776543
No 466
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=21.58 E-value=68 Score=24.01 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=12.6
Q ss_pred hhhccCeEEEecccC
Q 028847 67 ELAEADGILLGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
.+.++|.||+++|..
T Consensus 65 ~~~~~Dvvi~av~~~ 79 (266)
T 3d1l_A 65 VNPYAKLYIVSLKDS 79 (266)
T ss_dssp SCSCCSEEEECCCHH
T ss_pred HhcCCCEEEEecCHH
Confidence 356899999999976
No 467
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=21.52 E-value=1.8e+02 Score=23.20 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.1
Q ss_pred hhhhhccCeEEEecccC
Q 028847 65 PNELAEADGILLGFPTR 81 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y 81 (203)
.+.+..+|.+++++|..
T Consensus 75 ~~~~~~~DvVf~alg~~ 91 (352)
T 2nqt_A 75 AAVLGGHDAVFLALPHG 91 (352)
T ss_dssp HHHHTTCSEEEECCTTS
T ss_pred HHHhcCCCEEEECCCCc
Confidence 34566899999998875
No 468
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=21.48 E-value=2.6e+02 Score=20.89 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=21.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
++|++-+.- +..+.+.++...+.++. .+.++.++.+.+.
T Consensus 171 ~~Ilv~~d~-s~~s~~al~~a~~la~~-~~~~l~ll~v~~~ 209 (294)
T 3loq_A 171 DRVLVAYDF-SKWADRALEYAKFVVKK-TGGELHIIHVSED 209 (294)
T ss_dssp SEEEEECCS-SHHHHHHHHHHHHHHHH-HTCEEEEEEECSS
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHhhh-cCCEEEEEEEccC
Confidence 456554422 22345555555555544 2567888887653
No 469
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=21.43 E-value=1.2e+02 Score=22.51 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=22.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++|.++|-|...| |...+++.|.+. |.+|.+.+...
T Consensus 1 m~~k~vlVTGasg~----IG~~la~~L~~~-G~~V~~~~r~~ 37 (267)
T 3rft_A 1 MAMKRLLVTGAAGQ----LGRVMRERLAPM-AEILRLADLSP 37 (267)
T ss_dssp CCEEEEEEESTTSH----HHHHHHHHTGGG-EEEEEEEESSC
T ss_pred CCCCEEEEECCCCH----HHHHHHHHHHhc-CCEEEEEecCC
Confidence 54465666655444 555566666553 77777777654
No 470
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=21.41 E-value=2.3e+02 Score=21.69 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=21.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|+|+++ |.......+++.+...+.. +.+|.+++..+
T Consensus 31 m~ill~--~~~~~~~~l~q~l~~~l~~--~h~V~~~~~~~ 66 (260)
T 1zgh_A 31 MNIIIA--TTKSWNIKNAQKFKKENES--KYNTTIITNKD 66 (260)
T ss_dssp EEEEEE--CCSHHHHHHHHHHHHHTTT--TEEEEEECSGG
T ss_pred eEEEEE--CChHHHHHHHHHHHHHhcc--cCceEEEeCCC
Confidence 477665 3322345566667666763 66788776544
No 471
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=21.25 E-value=1.1e+02 Score=22.01 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=20.6
Q ss_pred CceEEEEEecCcc---hHHHHHHHHHHHhhccCCce
Q 028847 2 ATKVYIVYYSMYG---HVEKLAEEIQKGAASVEGVE 34 (203)
Q Consensus 2 m~kilIiy~S~~G---~T~~la~~i~~~l~~~~g~~ 34 (203)
|++|.|+.+|..| .-.+.|+.+.+.+.+. |+.
T Consensus 1 m~~V~V~gss~~~~~~~~~~~A~~lg~~La~~-g~~ 35 (191)
T 1t35_A 1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQ-GIG 35 (191)
T ss_dssp CCEEEEECCSSCCSSTHHHHHHHHHHHHHHHT-TCE
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHHHHHHC-CCE
Confidence 4567776666543 3566788888888763 543
No 472
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=21.23 E-value=1.7e+02 Score=20.65 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=25.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|.++.|-.||.-|+...-.+...+.+.+..+ +.++....
T Consensus 4 M~~v~i~LGSNlGd~~~~l~~A~~~L~~~~~--~~v~~~S~ 42 (161)
T 3qbc_A 4 MIQAYLGLGSNIGDRESQLNDAIKILNEYDG--ISVSNISP 42 (161)
T ss_dssp CEEEEEEEEECSSSHHHHHHHHHHHHHHSTT--EEEEEECC
T ss_pred ccEEEEEEecCccCHHHHHHHHHHHHhcCCC--CceEEECC
Confidence 4688888999999877666666666765223 44455544
No 473
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=21.23 E-value=1.9e+02 Score=24.22 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=18.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 5 VYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||-+- .++|+.+++.+.+ .|+.++++...
T Consensus 2 i~ilD~g-~~~~~~i~r~l~~-----~G~~~~i~p~~ 32 (503)
T 2ywb_A 2 VLVLDFG-SQYTRLIARRLRE-----LRAFSLILPGD 32 (503)
T ss_dssp EEEEESS-CTTHHHHHHHHHT-----TTCCEEEEETT
T ss_pred EEEEECC-CcHHHHHHHHHHH-----CCCEEEEEECC
Confidence 6766422 3456666666543 37778877653
No 474
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=21.22 E-value=1.8e+02 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=23.8
Q ss_pred ceEEEEEe--cCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 3 TKVYIVYY--SMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilIiy~--S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
.|+.+|-| |..|--+.+|+.+++ .|+.|-+.+..+.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~-----~Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQ-----LGAKLVFTYRKER 43 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHH-----TTCEEEEEESSGG
T ss_pred CCEEEEECCCCCchHHHHHHHHHHH-----CCCEEEEEECCHH
Confidence 37888887 445755666655544 4888888876643
No 475
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=21.09 E-value=2e+02 Score=19.52 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=41.7
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEccCCCCCCchhHHHHHHHHHHHcCcEEec
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 143 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~~~~~l~~~g~~~v~ 143 (203)
...+..+|++|+..-.-...-...++.|+..+.. ..++++.++++--...... .....+...+...++.++.
T Consensus 111 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~------~~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (208)
T 3clv_A 111 PLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQ 182 (208)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH------HSCCEEEEEEECTTCC-CC-SCHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh------hCCCcEEEEEECCCccccc-CCHHHHHHHHHHcCCcEEE
Confidence 3456789999998776554444556677766641 2347888877743221111 1234455566666765553
No 476
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=21.08 E-value=3.3e+02 Score=21.97 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=37.4
Q ss_pred ceEEEEEecCcch-----HHHHHHHHHHHhhccCCceEEEEEcCCCCc-hhHhhhcCCCCCCCCCCCChhhhhccCeEEE
Q 028847 3 TKVYIVYYSMYGH-----VEKLAEEIQKGAASVEGVEAKLWQVPETLS-EDVLGKMGAGPKSDVPTITPNELAEADGILL 76 (203)
Q Consensus 3 ~kilIiy~S~~G~-----T~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aD~iii 76 (203)
.||.+|-|-.-|- +.++.+++.+.. |+++++....- .. . ..... .+..|+...+.++++|++++
T Consensus 6 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~----~~~~~~~~~~~-G~~~-~~~~~----g~~lp~~tl~~~~~~da~L~ 75 (364)
T 3flk_A 6 FRIAAIPGDGIGLEVLPEGIRVLEAAALKH----GLALEFDTFEW-ASCD-YYLQH----GKMMPDDWAEQLKQYDAIYF 75 (364)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHH----TCCEEEEECCC-SSHH-HHHHH----SSSSCTTHHHHHTTSSEEEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHHhc----CCCeEEEEEeC-CcHH-HHhcc----CCcCCHHHHHHHHHCCEEEE
Confidence 4788888876542 334444443332 45555544321 11 1 01111 12345556788999999998
Q ss_pred e---cccC
Q 028847 77 G---FPTR 81 (203)
Q Consensus 77 g---sP~y 81 (203)
| +|.|
T Consensus 76 Gavg~P~~ 83 (364)
T 3flk_A 76 GAVGWPDK 83 (364)
T ss_dssp EECCBTTT
T ss_pred CCccCccc
Confidence 7 6766
No 477
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=21.07 E-value=1.6e+02 Score=21.75 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=22.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCCC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~ 43 (203)
|+.+|-|...|--..+|+.+++ .|+.|-+.+....
T Consensus 8 k~~lVTGas~gIG~aia~~l~~-----~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQ-----EGATVLGLDLKPP 42 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHH-----CCCEEEEEeCChH
Confidence 6777777766655556655544 3778877776543
No 478
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.06 E-value=1.1e+02 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=31.5
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEeccc
Q 028847 3 TKVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 80 (203)
Q Consensus 3 ~kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|. -| +-+|..+. . .|+.|.+.+-...+ ..+.+.+||.||-++|.
T Consensus 151 k~vvVvG~s~iVG--~plA~lL~----~-~gAtVtv~~~~t~~-------------------L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 151 NTVTIVNRSPVVG--RPLSMMLL----N-RNYTVSVCHSKTKD-------------------IGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp CEEEEECCCTTTH--HHHHHHHH----H-TTCEEEEECTTCSC-------------------HHHHHHHSSEEEECSSC
T ss_pred CEEEEEcCChHHH--HHHHHHHH----H-CCCeEEEEeCCccc-------------------HHHhhccCCEEEECCCC
Confidence 3667766664 24 33343333 2 27778776543211 24578999999999985
No 479
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=21.01 E-value=59 Score=25.66 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=23.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|||++.+...|+..-+. .+++.|.+ .|.+|.++--.
T Consensus 24 RIL~~~~p~~GHv~P~l-~LA~~L~~-rGh~Vt~~t~~ 59 (400)
T 4amg_A 24 RALFITSPGLSHILPTV-PLAQALRA-LGHEVRYATGG 59 (400)
T ss_dssp EEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEECS
T ss_pred eEEEECCCchhHHHHHH-HHHHHHHH-CCCEEEEEeCc
Confidence 89987655567755443 35556666 38999887543
No 480
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=20.97 E-value=1.5e+02 Score=21.74 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=21.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|.|+.+|-|...|--..+|+.++ + .|.+|-+.+...
T Consensus 21 m~k~vlITGas~gIG~~la~~l~----~-~G~~V~~~~r~~ 56 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFK----S-KSWNTISIDFRE 56 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHH----H-TTCEEEEEESSC
T ss_pred cCCEEEEECCCCHHHHHHHHHHH----H-CCCEEEEEeCCc
Confidence 34666666666665555555544 4 377887777654
No 481
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=20.94 E-value=2.1e+02 Score=22.05 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=24.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKL 37 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~ 37 (203)
+||.+||.+........++.+.+.+++. |.++..
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~-G~~v~~ 183 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTEL-GGQVKR 183 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHC-CCEEEE
Confidence 5889998755445566788888888874 766543
No 482
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=20.91 E-value=1.2e+02 Score=23.75 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=26.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
.|+...++...|-++..+..+++.+.+. |.+|.++-..
T Consensus 16 ~~~~~~~~p~~GG~~~~~~~la~~L~~~-G~~V~v~~~~ 53 (394)
T 2jjm_A 16 LKIGITCYPSVGGSGVVGTELGKQLAER-GHEIHFITSG 53 (394)
T ss_dssp CEEEEECCC--CHHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred eeeehhcCCCCCCHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 3555555544677788888888888884 8999988654
No 483
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=20.79 E-value=1.5e+02 Score=19.26 Aligned_cols=40 Identities=10% Similarity=-0.053 Sum_probs=24.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++|||+-+. .+.++...++...+.++. .+.++.++.+.+
T Consensus 4 ~~~~ILv~~D-~s~~s~~al~~A~~la~~-~~a~l~ll~v~~ 43 (146)
T 3s3t_A 4 RYTNILVPVD-SSDAAQAAFTEAVNIAQR-HQANLTALYVVD 43 (146)
T ss_dssp CCCEEEEECC-SSHHHHHHHHHHHHHHHH-HTCEEEEEEEEE
T ss_pred ccceEEEEcC-CCHHHHHHHHHHHHHHHh-cCCEEEEEEEec
Confidence 4567776653 334456666666555554 266888887754
No 484
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=20.76 E-value=1.1e+02 Score=23.20 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=10.7
Q ss_pred hhhhhccCeEEEecc
Q 028847 65 PNELAEADGILLGFP 79 (203)
Q Consensus 65 ~~~l~~aD~iiigsP 79 (203)
.+.+...|.||-...
T Consensus 58 ~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 58 KDYLKGAEEVWHIAA 72 (313)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhcCCCEEEECCC
Confidence 455678999987654
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=20.76 E-value=2.1e+02 Score=19.51 Aligned_cols=48 Identities=15% Similarity=0.001 Sum_probs=31.2
Q ss_pred hhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...--..++.++..+.. .....++|+.++++-
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 132 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD---EDELRKSLLLIFANK 132 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHT---CSTTTTCEEEEEEEC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh---hhhcCCCeEEEEEEC
Confidence 456789999999887654433445566655421 123468888888874
No 486
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.71 E-value=1.3e+02 Score=22.65 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=22.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|.|+.+|-|...|--..+|+.+++ .|+.|-+.+..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~-----~G~~V~~~~r~ 37 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGV-----AGAKILLGARR 37 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH-----CCCEEEEEECC
Confidence 347777777777755666655543 37777776654
No 487
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=20.70 E-value=33 Score=28.52 Aligned_cols=76 Identities=7% Similarity=-0.002 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHHhhccCCceE--EEEEcCCCCchhHhhhcCCCCCCCCCCCChhhhhccCeEEEe---cccC-----
Q 028847 12 MYGHVEKLAEEIQKGAASVEGVEA--KLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG---FPTR----- 81 (203)
Q Consensus 12 ~~G~T~~la~~i~~~l~~~~g~~v--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iiig---sP~y----- 81 (203)
..|-+..+..++.+.|.. .++++ +.+++.... .... .+..|+...+.+.++|++++| +|.|
T Consensus 38 GDGIGpEI~~~~~~vL~~-~~~~i~~~~~~~G~~~----~~~t----g~~lp~etl~aik~~da~LkGav~tP~~~~~~e 108 (427)
T 3us8_A 38 GDEMTRIIWQFIKDKLIH-PYLDLDLEYYDLGVEN----RDAT----DDQVTIDAANAIKKHGVGVKCATITPDEGRVEE 108 (427)
T ss_dssp CCHHHHHHHHHHHHHHTT-TTEECCEEEEECCHHH----HHHT----TTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHh-cCCCeEEEEEeCCHHH----HHhh----CCcCCHHHHHHHHHCCEEEECCccCCCcccccc
Confidence 357788888888888876 35544 444443110 0000 011122246678999999975 7776
Q ss_pred ------CCCcHHHHHHHHHHh
Q 028847 82 ------FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ------~~~~~~~lk~fld~~ 96 (203)
|.++--.|+.-||..
T Consensus 109 ~~l~~~~~s~n~~LRk~Ldly 129 (427)
T 3us8_A 109 FKLKKMWKSPNGTIRNILGGV 129 (427)
T ss_dssp HTCSSCCCCHHHHHHHHHCSE
T ss_pred ccccccccCchHHHHHHhCCe
Confidence 334445677777753
No 488
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=20.65 E-value=94 Score=24.47 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.3
Q ss_pred hhhhccCeEEEeccc
Q 028847 66 NELAEADGILLGFPT 80 (203)
Q Consensus 66 ~~l~~aD~iiigsP~ 80 (203)
+.+.+||.||-++|.
T Consensus 206 ~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 206 DYLRTADIVIAAMGQ 220 (300)
T ss_dssp HHHHTCSEEEECSCC
T ss_pred hhhccCCEEEECCCC
Confidence 568999999999996
No 489
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=20.63 E-value=1.9e+02 Score=19.50 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=30.8
Q ss_pred hhhhhccCeEEEecccCCCCcHHHHHHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 65 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~lk~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...--..++.|+..+... ....+.++.++++-
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~nK 132 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFPMILVANK 132 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HTSSCCCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEC
Confidence 44578899999987775543333455666555311 13467788888774
No 490
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=20.53 E-value=68 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=22.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||+++.+...|+.. -+-.+++.|.+ .|++|.++.-.
T Consensus 7 m~kIl~~~~~~~Gh~~-p~~~la~~L~~-~G~~V~~~~~~ 44 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVN-PSLEVIRELVA-RGHRVTYAIPP 44 (430)
T ss_dssp -CEEEEECCSCHHHHG-GGHHHHHHHHH-TTCEEEEEECG
T ss_pred cceEEEEeCCCCcccc-chHHHHHHHHH-CCCeEEEEeCH
Confidence 3588886443356543 23445555655 38888887544
No 491
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=20.52 E-value=62 Score=24.58 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=17.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 2 ATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
|+||+|. |. |-.+...+.+.|.+ .|.+|..++-.
T Consensus 7 ~~~vlVt-Ga----tG~iG~~l~~~L~~-~g~~V~~~~r~ 40 (321)
T 3vps_A 7 KHRILIT-GG----AGFIGGHLARALVA-SGEEVTVLDDL 40 (321)
T ss_dssp CCEEEEE-TT----TSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred CCeEEEE-CC----CChHHHHHHHHHHH-CCCEEEEEecC
Confidence 3466653 33 23344555555544 37777776543
No 492
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.47 E-value=2.7e+02 Score=20.79 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=26.5
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 4 KVYIVYYSM-YGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilIiy~S~-~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
+|.++..+. ......+.+.+.+.+++ .|+++.+.+..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 41 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAES-LGAKVFVQSAN 41 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHH-TSCEEEEEECT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEECCC
Confidence 566666543 44567788888888888 48888887664
No 493
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=20.44 E-value=1.8e+02 Score=21.39 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 1 MATKVYIVYYSMY--GHVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 1 mm~kilIiy~S~~--G~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|| |++.|.+... |.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~~I~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (263)
T 1hyq_A 1 MV-RTITVASGKGGTGKTT-ITANLGVALAQ-LGHDVTIVDADI 41 (263)
T ss_dssp -C-EEEEEEESSSCSCHHH-HHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CC-eEEEEECCCCCCCHHH-HHHHHHHHHHh-CCCcEEEEECCC
Confidence 54 6666655543 5444 34445555554 377899999864
No 494
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=20.42 E-value=71 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=17.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQ 39 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~ 39 (203)
|+|+|+|. |. |-.+...+++.|.+ .|.+|..++
T Consensus 1 m~~~vlVt-Ga----tG~iG~~l~~~L~~-~g~~V~~~~ 33 (315)
T 2ydy_A 1 MNRRVLVT-GA----TGLLGRAVHKEFQQ-NNWHAVGCG 33 (315)
T ss_dssp -CCEEEEE-TT----TSHHHHHHHHHHHT-TTCEEEEEC
T ss_pred CCCeEEEE-CC----CcHHHHHHHHHHHh-CCCeEEEEc
Confidence 55566653 33 23355555555555 377777665
No 495
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=20.38 E-value=2.7e+02 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=20.4
Q ss_pred ceEEEE-EecCcchHHHHHHHHHHHhhccCCceEEEEEcC
Q 028847 3 TKVYIV-YYSMYGHVEKLAEEIQKGAASVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilIi-y~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l~ 41 (203)
++|+|| |+| ++++.+++.+.+ .|+.++++...
T Consensus 8 ~~IlIlD~g~--~~~~~i~r~lr~-----~G~~~~i~p~~ 40 (525)
T 1gpm_A 8 HRILILDFGS--QYTQLVARRVRE-----LGVYCELWAWD 40 (525)
T ss_dssp SEEEEEECSC--TTHHHHHHHHHH-----TTCEEEEEESC
T ss_pred CEEEEEECCC--ccHHHHHHHHHH-----CCCEEEEEECC
Confidence 368888 444 456667766644 37788887653
No 496
>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*
Probab=20.35 E-value=1e+02 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=15.4
Q ss_pred EEecCcchHHHHHHHHHHHhhccCCceEEEEEc
Q 028847 8 VYYSMYGHVEKLAEEIQKGAASVEGVEAKLWQV 40 (203)
Q Consensus 8 iy~S~~G~T~~la~~i~~~l~~~~g~~v~~~~l 40 (203)
+|+++++++.+ +..+.+.+ |++.+.+.+
T Consensus 6 LY~~p~s~s~r-vri~L~e~----gl~~e~~~v 33 (211)
T 4gci_A 6 LFYKPGACSLS-PHIVLREA----GLDFSIERV 33 (211)
T ss_dssp EEECTTSTTHH-HHHHHHHT----TCCEEEEEE
T ss_pred EEeCCCCcHHH-HHHHHHHh----CCCCeEEEe
Confidence 47787666554 44444443 666555443
No 497
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=20.32 E-value=2.3e+02 Score=19.93 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=28.0
Q ss_pred hhhhccCeEEEecccCCCCcHHHH-HHHHHHhcccccccCCCCCeEEEEEcc
Q 028847 66 NELAEADGILLGFPTRFGMMAAQF-KAFLDATGGLWRSQQLAGKPAGIFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~l-k~fld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...-...+ +.|++.+.. ...+.++.++++-
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~nK 141 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-----FCPNTKMLLVGCK 141 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HCTTCEEEEEEEC
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----HCCCCCEEEEEec
Confidence 356789999998776542222223 456555532 2357888887764
No 498
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.28 E-value=1.7e+02 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=23.2
Q ss_pred hccCeEEEecccCCCCcHHHHHHHHHHhc
Q 028847 69 AEADGILLGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~lk~fld~~~ 97 (203)
..+|++++.+|-|+.--...+..++..+.
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va 134 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYIS 134 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 47999999999998766677777777764
No 499
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.14 E-value=1.4e+02 Score=18.63 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=15.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhccCCceEE
Q 028847 1 MATKVYIVYYSMYGHVEKLAEEIQKGAASVEGVEAK 36 (203)
Q Consensus 1 mm~kilIiy~S~~G~T~~la~~i~~~l~~~~g~~v~ 36 (203)
||++|+|+-.++ ...+.+...++. .|.++.
T Consensus 1 m~~~ilivdd~~-----~~~~~l~~~l~~-~g~~v~ 30 (127)
T 2jba_A 1 MARRILVVEDEA-----PIREMVCFVLEQ-NGFQPV 30 (127)
T ss_dssp -CCEEEEECSCH-----HHHHHHHHHHHH-TTCEEE
T ss_pred CCcEEEEEcCCH-----HHHHHHHHHHHH-CCceEE
Confidence 677888876553 233444444444 365543
No 500
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=20.14 E-value=2.3e+02 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=20.2
Q ss_pred eEEEEEecCc--c---hHHHHHHHHHHHhhccCCceEEEEEcCC
Q 028847 4 KVYIVYYSMY--G---HVEKLAEEIQKGAASVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilIiy~S~~--G---~T~~la~~i~~~l~~~~g~~v~~~~l~~ 42 (203)
|++.|.+... | .+..+|..+++ ... .|-++|+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~-~g~----~vlliD~D~ 40 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR-SGY----NIAVVDTDP 40 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH-TTC----CEEEEECCT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH-CCC----eEEEEECCC
Confidence 5655554443 3 36778888876 455 266777653
Done!