BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028848
(202 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225432566|ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Vitis vinifera]
Length = 482
Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/182 (62%), Positives = 145/182 (79%), Gaps = 4/182 (2%)
Query: 13 LVTRVNHKLSSPNSIEFTNRAFLPVSISWKPLRAVLSSSAVSIEELAAGTGNNSLTLREL 72
L +N + +++ FT R + + KP +A L+SS+++ A+ G +LTLRE+
Sbjct: 26 LAPSLNSNRRTDSTVHFTRRVS-NSNCNAKPAQATLNSSSIT---EASDIGERTLTLREI 81
Query: 73 CQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV 132
CQG VPEHVLRR++E G+++PTD+Q++ALPVL S RDCILHAQTGSGKTLTYLLLIFS+V
Sbjct: 82 CQGCVPEHVLRRIEEVGFIVPTDVQQQALPVLLSGRDCILHAQTGSGKTLTYLLLIFSVV 141
Query: 133 NAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSW 192
N + SAVQA+IVVPTRELG+QVTKVAR+LAAKP + +LE K CTVMALLDGGML+RHKSW
Sbjct: 142 NTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSCTVMALLDGGMLKRHKSW 201
Query: 193 LK 194
LK
Sbjct: 202 LK 203
>gi|297737002|emb|CBI26203.3| unnamed protein product [Vitis vinifera]
Length = 486
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/186 (60%), Positives = 144/186 (77%), Gaps = 8/186 (4%)
Query: 13 LVTRVNHKLSSPNSIEFTNRAFLPVSISWKPLRAVLSSSAVSIEELAAGTGNNSLTLREL 72
L +N + +++ FT R + + KP +A L+SS+++ A+ G +LTLRE+
Sbjct: 26 LAPSLNSNRRTDSTVHFTRRVS-NSNCNAKPAQATLNSSSIT---EASDIGERTLTLREI 81
Query: 73 CQGHVPEHVLR----RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
CQG VPEHV+ R++E G+++PTD+Q++ALPVL S RDCILHAQTGSGKTLTYLLLI
Sbjct: 82 CQGCVPEHVIALICFRIEEVGFIVPTDVQQQALPVLLSGRDCILHAQTGSGKTLTYLLLI 141
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRR 188
FS+VN + SAVQA+IVVPTRELG+QVTKVAR+LAAKP + +LE K CTVMALLDGGML+R
Sbjct: 142 FSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSCTVMALLDGGMLKR 201
Query: 189 HKSWLK 194
HKSWLK
Sbjct: 202 HKSWLK 207
>gi|255552301|ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543830|gb|EEF45358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 476
Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 132/172 (76%), Gaps = 14/172 (8%)
Query: 29 FTNRAFLPVSISWKPLRAVLSSSAVSIEELAAGT------GNNSLTLRELCQGHVPEHVL 82
F NR L ++S+ L+AVL+SS I + N+ LTLRELCQ +VPE VL
Sbjct: 38 FKNRGLLS-TLSFSHLQAVLNSSTSLITKEEEEEEQFDPKSNHFLTLRELCQNYVPEPVL 96
Query: 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAV 142
RM+E GYV+PTD+QR+ALPVLFS +DCILH QTGSGKTL YLLLI+S++NAQRSAVQA+
Sbjct: 97 HRMEEIGYVMPTDVQRQALPVLFSGQDCILHGQTGSGKTLAYLLLIYSVINAQRSAVQAL 156
Query: 143 IVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
I+VPTRELGMQVTKVAR+LAAKP D TVMALLDGGMLRRHKSWLK
Sbjct: 157 IIVPTRELGMQVTKVARMLAAKPMDV-------TVMALLDGGMLRRHKSWLK 201
>gi|11385586|gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
gi|11385590|gb|AAG34876.1|AF261021_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
Length = 466
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 142/196 (72%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S +E
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DVEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ TLRELC GHVPEHV+RR++E GYV+PT++Q +ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL I S++++QRSAVQA+IVVPTRELGMQVTKVAR+LAAKPS+ + K CTVM
Sbjct: 116 GKTLAYLLQILSVIDSQRSAVQALIVVPTRELGMQVTKVARMLAAKPSELESGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|42573431|ref|NP_974812.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
gi|108861900|sp|Q3E9C3.1|RH58_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 58,
chloroplastic; Flags: Precursor
gi|332005287|gb|AED92670.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
Length = 472
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 125/151 (82%), Gaps = 4/151 (2%)
Query: 44 LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPV 103
L+AV +S+ IE + LTLR++CQG VPEH+L RM+E G+V PTDIQREALP
Sbjct: 51 LQAVAETSS-EIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPT 109
Query: 104 LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
LF+ RDCILHAQTGSGKTLTYLLLIFSL+N QRS+VQAVIVVPTRELGMQVTKVAR+LAA
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAA 169
Query: 164 KPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
K ++++ K CTVMALLDGG LRRHKSWLK
Sbjct: 170 K---SEIDVKGCTVMALLDGGTLRRHKSWLK 197
>gi|297807977|ref|XP_002871872.1| hypothetical protein ARALYDRAFT_488806 [Arabidopsis lyrata subsp.
lyrata]
gi|297317709|gb|EFH48131.1| hypothetical protein ARALYDRAFT_488806 [Arabidopsis lyrata subsp.
lyrata]
Length = 473
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 128/151 (84%), Gaps = 5/151 (3%)
Query: 44 LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPV 103
L+AV +S+ IE +A T +LTLR++CQG VPEH+L RM+E G++ PTDIQREALP
Sbjct: 53 LQAVAETSS-EIESNSA-TDTAALTLRKICQGFVPEHILHRMEEIGFISPTDIQREALPT 110
Query: 104 LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
LF+ RDCILHAQTGSGKTLTYLLLIFSL+N QRS+VQAVIVVPTRELGMQVTKVAR+LAA
Sbjct: 111 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAA 170
Query: 164 KPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
K ++++ K CTVMALLDGG LRRHKSWLK
Sbjct: 171 K---SEIDVKGCTVMALLDGGTLRRHKSWLK 198
>gi|356520045|ref|XP_003528676.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Glycine max]
Length = 472
Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/150 (67%), Positives = 124/150 (82%), Gaps = 6/150 (4%)
Query: 45 RAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVL 104
+A+L++S ++ E+ T LRELCQ HVPEH+L+RM+E GYV+PTDIQREALP L
Sbjct: 54 QAILNTSPIAPSEVTTPT------LRELCQSHVPEHILQRMEEIGYVMPTDIQREALPYL 107
Query: 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
FS DCILHAQTGSGKTLTYLLLI S++NA +S+VQA+++VPTRELGMQVTKVAR LAAK
Sbjct: 108 FSGLDCILHAQTGSGKTLTYLLLIHSIINAAKSSVQALVLVPTRELGMQVTKVARTLAAK 167
Query: 165 PSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
P+ D E K C++MALLDGG L+RHK+WLK
Sbjct: 168 PTGVDGEQKSCSIMALLDGGTLKRHKTWLK 197
>gi|11596133|gb|AAG38493.1|AF261032_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana
tabacum]
Length = 365
Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|11596137|gb|AAG38497.1|AF261032_5 putative chloroplast RNA helicase VDL' isoform 5 [Nicotiana
tabacum]
Length = 289
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|11385596|gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana
tabacum]
Length = 466
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|11385604|gb|AAG34883.1|AF261028_1 putative chloroplast RNA helicase VDL' isoform 5 [Nicotiana
tabacum]
Length = 390
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|11596138|gb|AAG38498.1|AF261032_6 putative chloroplast RNA helicase VDL' isoform 6 [Nicotiana
tabacum]
Length = 226
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|11596140|gb|AAG38500.1|AF261032_8 putative chloroplast RNA helicase VDL' isoform 8 [Nicotiana
tabacum]
Length = 191
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|11385606|gb|AAG34884.1|AF261029_1 putative chloroplast RNA helicase VDL' isoform 6 [Nicotiana
tabacum]
Length = 294
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 138/196 (70%), Gaps = 7/196 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKSWLK 194
ALLDGGML RHKSWLK
Sbjct: 176 ALLDGGMLNRHKSWLK 191
>gi|449433337|ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Cucumis sativus]
gi|449531697|ref|XP_004172822.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Cucumis sativus]
Length = 473
Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 114/127 (89%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
TLRE+C GHVPEH+LRR +E G+V PTD+QR+ALPVLFS RDC+LHAQTGSGKTLTYLLL
Sbjct: 72 TLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLL 131
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
IFS++NA++SAVQA+IVVPTRELGMQVTKVAR+LAAKP+ ++ VMALLDGG+LR
Sbjct: 132 IFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLR 191
Query: 188 RHKSWLK 194
RHK+WLK
Sbjct: 192 RHKTWLK 198
>gi|11385610|gb|AAG34886.1|AF261031_1 putative chloroplast RNA helicase VDL' isoform 8 [Nicotiana
tabacum]
Length = 188
Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/193 (56%), Positives = 135/193 (69%), Gaps = 7/193 (3%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVM 178
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQVTKVAR LAAKPS+ K CTVM
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCTVM 175
Query: 179 ALLDGGMLRRHKS 191
ALLDGGML RHKS
Sbjct: 176 ALLDGGMLNRHKS 188
>gi|357480217|ref|XP_003610394.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|217074248|gb|ACJ85484.1| unknown [Medicago truncatula]
gi|355511449|gb|AES92591.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|388507084|gb|AFK41608.1| unknown [Medicago truncatula]
Length = 480
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 112/128 (87%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+TLR+LCQ HVP+ +L+RM+E GYV+PT +Q++ALP LFS RDCILHAQTGSGKTL YLL
Sbjct: 78 ITLRQLCQSHVPDQLLQRMEEVGYVMPTPVQKQALPRLFSGRDCILHAQTGSGKTLAYLL 137
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGML 186
LI+S+++ ++S+ QA+++VPTRELGMQVTKVAR+LAAKP+ + E + CT+MALLDGG L
Sbjct: 138 LIYSIISTRKSSFQALVLVPTRELGMQVTKVARILAAKPTGVEGEQRSCTIMALLDGGTL 197
Query: 187 RRHKSWLK 194
RRHKSW K
Sbjct: 198 RRHKSWFK 205
>gi|143456767|sp|Q0JFN7.2|RH58_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 58,
chloroplastic; Flags: Precursor
Length = 438
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 104/127 (81%), Gaps = 9/127 (7%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
TLRE+C G VPEHVL+R +E GYV+PT++Q ++LPVL S +DCILHAQTGSGKTL YLL
Sbjct: 39 TLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLS 98
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
+FS ++ RS+VQA++VVPTRELGMQVTKVAR+LAA K CTVMALLDGGMLR
Sbjct: 99 VFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAA---------KACTVMALLDGGMLR 149
Query: 188 RHKSWLK 194
R KSW+K
Sbjct: 150 RQKSWVK 156
>gi|222637690|gb|EEE67822.1| hypothetical protein OsJ_25587 [Oryza sativa Japonica Group]
Length = 395
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 104/127 (81%), Gaps = 9/127 (7%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
TLRE+C G VPEHVL+R +E GYV+PT++Q ++LPVL S +DCILHAQTGSGKTL YLL
Sbjct: 39 TLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLS 98
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
+FS ++ RS+VQA++VVPTRELGMQVTKVAR+LAA K CTVMALLDGGMLR
Sbjct: 99 VFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAA---------KACTVMALLDGGMLR 149
Query: 188 RHKSWLK 194
R KSW+K
Sbjct: 150 RQKSWVK 156
>gi|57899209|dbj|BAD87358.1| putative RNA helicase [Oryza sativa Japonica Group]
Length = 377
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/130 (66%), Positives = 106/130 (81%), Gaps = 9/130 (6%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
++ TLRE+C G VPEHVL+R +E GYV+PT++Q ++LPVL S +DCILHAQTGSGKTL Y
Sbjct: 36 SAATLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAY 95
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGG 184
LL +FS ++ RS+VQA++VVPTRELGMQVTKVAR+LAA K CTVMALLDGG
Sbjct: 96 LLSVFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAA---------KACTVMALLDGG 146
Query: 185 MLRRHKSWLK 194
MLRR KSW+K
Sbjct: 147 MLRRQKSWVK 156
>gi|357126966|ref|XP_003565158.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Brachypodium distachyon]
Length = 446
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 115/157 (73%), Gaps = 16/157 (10%)
Query: 38 SISWKPLRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQ 97
S S+ PL A S S + AA TLRE+C G VP+HVL+R ++ GYV+PT++Q
Sbjct: 24 SPSYTPLAASTSRSGLRPLRAAA-------TLREVCAGRVPDHVLQRAEDVGYVVPTEVQ 76
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157
++LPVL S +DCILHAQTGSGKTL YLL +FS ++ +RS+VQA+++VPTRELG+QVTKV
Sbjct: 77 EQSLPVLLSGQDCILHAQTGSGKTLAYLLSVFSAIDVRRSSVQALVIVPTRELGIQVTKV 136
Query: 158 ARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
ARVLAA K CTVMALLDGGML R KSW+K
Sbjct: 137 ARVLAA---------KACTVMALLDGGMLTRQKSWVK 164
>gi|226509832|ref|NP_001147746.1| ATP binding protein [Zea mays]
gi|195613438|gb|ACG28549.1| ATP binding protein [Zea mays]
Length = 447
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 103/127 (81%), Gaps = 9/127 (7%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
TLRE+C G VP+HVL+R +E GYV+PT++Q ++LP+L S +DCILHAQTGSGKTL YLL
Sbjct: 46 TLREVCSGRVPDHVLQRAEEIGYVVPTEMQEQSLPLLLSGQDCILHAQTGSGKTLAYLLS 105
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
IFS ++ RS+VQA++VVPTRELGMQVTKVAR+LAA K CTVMALLDGG L+
Sbjct: 106 IFSTIDFSRSSVQALVVVPTRELGMQVTKVARLLAA---------KACTVMALLDGGTLK 156
Query: 188 RHKSWLK 194
R KSW+K
Sbjct: 157 RQKSWVK 163
>gi|326519807|dbj|BAK00276.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 115/161 (71%), Gaps = 17/161 (10%)
Query: 42 KPLRAVLSSS--AVSIEELAAGTGNNSL------TLRELCQGHVPEHVLRRMDETGYVLP 93
+PL + LSSS A S+ A+ L TLRE+C G VP+HVL+R ++ GYV P
Sbjct: 15 RPLPSTLSSSPRAASLAPFASRPRPRPLRTTAAATLREVCSGRVPDHVLQRAEDVGYVSP 74
Query: 94 TDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQ 153
T++Q ++LPVL S +DCILHAQTGSGKTL YLL +F+ ++ RS+VQA+++VPTRELG+Q
Sbjct: 75 TEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLAVFAAIDVGRSSVQALVIVPTRELGIQ 134
Query: 154 VTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
VTKVAR+LAA K C VMALLDGGML R KSWLK
Sbjct: 135 VTKVARLLAA---------KTCNVMALLDGGMLTRQKSWLK 166
>gi|168052082|ref|XP_001778480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670078|gb|EDQ56653.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 416
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L +LC VPE+VLR+ +E GY +PT +Q+EALPVL S RDCILHAQTGSGKTL YLL I
Sbjct: 4 LSKLCMNKVPEYVLRKAEEVGYSVPTLVQQEALPVLLSGRDCILHAQTGSGKTLAYLLPI 63
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKP-----CTVMALLDG 183
F+ + R+AVQA++VVPTRELGMQV KVAR LA K + P VM LL+G
Sbjct: 64 FAKILPARAAVQAIVVVPTRELGMQVAKVARKLAGKGGSEEDGKAPKEKGTVMVMTLLEG 123
Query: 184 GMLRRHKSWLK 194
G R K+WLK
Sbjct: 124 GTNSRQKAWLK 134
>gi|11596136|gb|AAG38496.1|AF261032_4 putative chloroplast RNA helicase VDL' isoform 4 [Nicotiana
tabacum]
Length = 324
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 105/155 (67%), Gaps = 7/155 (4%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQ 153
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQ
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQ 150
>gi|11385602|gb|AAG34882.1|AF261027_1 putative chloroplast RNA helicase VDL' isoform 4 [Nicotiana
tabacum]
Length = 425
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 105/155 (67%), Gaps = 7/155 (4%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQTGS
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGS 115
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQ 153
GKTL YLL + S++++QRSAVQA+IVVPTRELGMQ
Sbjct: 116 GKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQ 150
>gi|302789472|ref|XP_002976504.1| hypothetical protein SELMODRAFT_267992 [Selaginella moellendorffii]
gi|300155542|gb|EFJ22173.1| hypothetical protein SELMODRAFT_267992 [Selaginella moellendorffii]
Length = 428
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 96/146 (65%), Gaps = 7/146 (4%)
Query: 56 EELAAGTGNNSL-TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHA 114
EE+ G +++ TLR+LC VP HVL R +E G PT +Q EALPV RDCILHA
Sbjct: 4 EEICGIGGVDAMPTLRDLCGSKVPSHVLDRAEEAGLRFPTQVQMEALPVALEGRDCILHA 63
Query: 115 QTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKP--SDTDL-- 170
QTGSGKTL Y+L I S ++ QRSAVQA++VVPTRELG+QV +VAR+L +TD
Sbjct: 64 QTGSGKTLAYMLPILSKISCQRSAVQAIVVVPTRELGIQVAQVARLLGGGVVLEETDEID 123
Query: 171 --EHKPCTVMALLDGGMLRRHKSWLK 194
+ +VM LLDGG R K WL+
Sbjct: 124 TGKRTSVSVMTLLDGGTSSRQKKWLR 149
>gi|218189822|gb|EEC72249.1| hypothetical protein OsI_05378 [Oryza sativa Indica Group]
Length = 385
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 89/126 (70%), Gaps = 19/126 (15%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
LRE+C G VPEHVL+R +E GYV+PT+ L C L TGSGKTL YLL +
Sbjct: 40 LREVCAGRVPEHVLQRAEEVGYVVPTEGAGAILA-------CPL---TGSGKTLAYLLSV 89
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRR 188
FS ++ RS+VQA++VVPTRELGMQVTKVAR+LAA K CTVMALLDGGMLRR
Sbjct: 90 FSAIDFGRSSVQALVVVPTRELGMQVTKVARILAA---------KACTVMALLDGGMLRR 140
Query: 189 HKSWLK 194
KSW+K
Sbjct: 141 QKSWVK 146
>gi|194699860|gb|ACF84014.1| unknown [Zea mays]
gi|413951214|gb|AFW83863.1| ATP binding protein [Zea mays]
Length = 374
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 79/99 (79%), Gaps = 9/99 (9%)
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
+Q ++LP+L S +DCILHAQTGSGKTL YLL IFS ++ RS+VQA++VVPTRELGMQVT
Sbjct: 1 MQEQSLPLLLSGQDCILHAQTGSGKTLAYLLSIFSTIDFSRSSVQALVVVPTRELGMQVT 60
Query: 156 KVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
KVAR+LAA K CTVMALLDGG L+R KSW+K
Sbjct: 61 KVARLLAA---------KACTVMALLDGGTLKRQKSWVK 90
>gi|302783262|ref|XP_002973404.1| hypothetical protein SELMODRAFT_413731 [Selaginella moellendorffii]
gi|300159157|gb|EFJ25778.1| hypothetical protein SELMODRAFT_413731 [Selaginella moellendorffii]
Length = 707
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 78/117 (66%), Gaps = 6/117 (5%)
Query: 84 RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVI 143
R +E G PT +Q EALPV RDCILHAQTGSGKTL Y+L I S ++ QRSAVQA++
Sbjct: 134 RAEEAGLRFPTQVQMEALPVALEGRDCILHAQTGSGKTLAYMLPILSKISCQRSAVQAIV 193
Query: 144 VVPTRELGMQVTKVARVLAAKP--SDTD----LEHKPCTVMALLDGGMLRRHKSWLK 194
VVPTRELG+QV +VAR+L +TD + +VM LLDGG R K WL+
Sbjct: 194 VVPTRELGIQVAQVARLLGGGVVLEETDEIDTTKRTSVSVMTLLDGGTSSRQKKWLR 250
>gi|323450830|gb|EGB06709.1| hypothetical protein AURANDRAFT_54120, partial [Aureococcus
anophagefferens]
Length = 419
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 90 YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149
Y PT +Q E +PV DC++HAQTGSGKTL YL +F+ V+A R QAV++VPTRE
Sbjct: 38 YATPTAVQAETIPVALDGHDCLIHAQTGSGKTLAYLAPLFARVDASRQTTQAVVIVPTRE 97
Query: 150 LGMQVTKVARVLA-AKPSDTDLEHKPCTVMALLDGGMLRRHKSW 192
LG+QV +VAR LA A P+ D KP VM+LLDG RR ++W
Sbjct: 98 LGLQVARVARRLASALPAAPD--GKPVMVMSLLDGSSHRRQRAW 139
>gi|299117280|emb|CBN75240.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 465
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 10/130 (7%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSR--DCILHAQTGSGKTLTYL 125
T REL +G +P+ +L R+++ G+ PT +QR+AL V+ D +LHAQTGSGKTL +L
Sbjct: 5 TFRELFRGRLPDWLLNRLEQLGFATPTLVQRQALEVILGEEKHDAVLHAQTGSGKTLAFL 64
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPS---DTDLEHKPCTVMALLD 182
L + V+ R+AVQ ++VVPTRELG+QV VA+ LAA S D+ ++ VM++L+
Sbjct: 65 LPLLGRVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAAGTSSGRDSKIQ-----VMSVLE 119
Query: 183 GGMLRRHKSW 192
G +R ++W
Sbjct: 120 GSSNKRQRAW 129
>gi|219112265|ref|XP_002177884.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410769|gb|EEC50698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 623
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALP-VLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+P ++++ E G+ P+ IQ +AL +LF RD ++ A+TGSGKTL YLL + ++
Sbjct: 142 LPSWLIQKCAECGWTHPSRIQEKALDAILFERRDAVVQAETGSGKTLAYLLPALASIDGS 201
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTD---LEHKPCTVMALLDGGMLRRHKSW 192
R+AVQA+IVVPTRELG+QV +VA+ LAA + D L VM++L G RR ++W
Sbjct: 202 RAAVQALIVVPTRELGLQVARVAKRLAAASTQNDNVTLNGGRIMVMSVLQGSQNRRQRAW 261
>gi|11385588|gb|AAG34875.1|AF261020_3 putative chloroplast RNA helicase VDL isoform 3 [Nicotiana tabacum]
gi|11385594|gb|AAG34878.1|AF261023_1 putative chloroplast RNA helicase VDL isoform 3 [Nicotiana tabacum]
Length = 168
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 15/121 (12%)
Query: 1 MAAIAISATHTILVT----RVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVS 54
MA + + HT+L T R +H PN +T R FL KPL A S+S V
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFK-PN---YTYRTPKFL---FRQKPLIASFSTSDV- 52
Query: 55 IEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHA 114
E +++ TLRELC GHVPEHV+RR++E GYV+PT++Q +ALP L+S RDC+LHA
Sbjct: 53 -EARTETKDSSTATLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHA 111
Query: 115 Q 115
Q
Sbjct: 112 Q 112
>gi|11385587|gb|AAG34874.1|AF261020_2 putative chloroplast RNA helicase VDL isoform 2 [Nicotiana tabacum]
gi|11385592|gb|AAG34877.1|AF261022_1 putative chloroplast RNA helicase VDL isoform 2 [Nicotiana tabacum]
Length = 132
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 7/117 (5%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S +E
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DVEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
+++ TLRELC GHVPEHV+RR++E GYV+PT++Q +ALP L+S RDC+LHAQ
Sbjct: 56 TETKDSSTATLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQ 112
>gi|11385600|gb|AAG34881.1|AF261026_1 putative chloroplast RNA helicase VDL' isoform 3 [Nicotiana
tabacum]
gi|11596135|gb|AAG38495.1|AF261032_3 putative chloroplast RNA helicase VDL' isoform 3 [Nicotiana
tabacum]
Length = 168
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 16/136 (11%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQ
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQ--- 112
Query: 119 GKTLTYLLLIFSLVNA 134
L IFS A
Sbjct: 113 ------LKFIFSFTIA 122
>gi|11385608|gb|AAG34885.1|AF261030_1 putative chloroplast RNA helicase VDL' isoform 7 [Nicotiana
tabacum]
gi|11596139|gb|AAG38499.1|AF261032_7 putative chloroplast RNA helicase VDL' isoform 7 [Nicotiana
tabacum]
Length = 137
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQ
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQ 112
>gi|11385598|gb|AAG34880.1|AF261025_1 putative chloroplast RNA helicase VDL' isoform 2 [Nicotiana
tabacum]
gi|11596134|gb|AAG38494.1|AF261032_2 putative chloroplast RNA helicase VDL' isoform 2 [Nicotiana
tabacum]
Length = 132
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 1 MAAIAISATHTILVTRVNHKLSSPNSIEFTNRA--FLPVSISWKPLRAVLSSSAVSIEEL 58
MA + + HT+L T ++ S +T R FL KPL A S+S IE
Sbjct: 1 MACFSATQLHTLLWTSSLNRTSHHFKPNYTYRTPKFL---FRQKPLIASFSTS--DIEAR 55
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
+++ T RELC GHVPEHV+RR++E GYV+PT++Q ALP L+S RDC+LHAQ
Sbjct: 56 TETKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQ 112
>gi|104640906|gb|ABF73006.1| plastid RNA helicase VDL protein precursor [Karenia brevis]
Length = 216
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
NS T EL +P ++ R E GY PT +Q EA+ VL RD I+ A+TGSGKTL Y
Sbjct: 118 NSDTFAELFADKLPTWLIERAAELGYSTPTPVQTEAIDVLIDGRDAIVQAKTGSGKTLAY 177
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+L + + + A + AVQA++V+PT EL QV VAR LA+
Sbjct: 178 MLPLLAALKA-KPAVQAIVVLPTAELAAQVALVARSLAS 215
>gi|428171143|gb|EKX40062.1| ATP-dependent RNA helicase, plastid-targeted [Guillardia theta
CCMP2712]
Length = 512
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 15/148 (10%)
Query: 57 ELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALP-VLFSSRDCILHAQ 115
+ +A + S++ RE +P ++ R++ G+ PT +Q A+ ++ S+D ++ A
Sbjct: 112 DASARSEGTSMSYRERFDDVLPSWLIDRLEACGFSCPTPVQSAAIETIVRDSKDALVQAY 171
Query: 116 TGSGKTLTYLLLIFSLVNAQR---------SAVQAVIVVPTRELGMQVTKVARVLAAKPS 166
TGSGKTL +++ +F+++ R + VQAVIV PTREL MQ+TKVAR +A
Sbjct: 172 TGSGKTLAFMVPLFAVLEQDRLQDKKGRRLAGVQAVIVAPTRELAMQLTKVARQIAVGCP 231
Query: 167 DTDLEHKPCTVMALLDGGMLRRHKSWLK 194
D L VM++ +R + WLK
Sbjct: 232 DATL-----NVMSITSDSKAKRQRIWLK 254
>gi|452821299|gb|EME28331.1| DEAD box ATP-dependent RNA helicase, putative [Galdieria
sulphuraria]
Length = 430
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 66/96 (68%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P ++R +++ G+ +Q++A+PV+FS +D +L A TGSGKTL +L+ + SLV+ ++
Sbjct: 44 IPNWLIRNLEKQGFQHFNVVQQKAIPVIFSGKDLVLVAPTGSGKTLAFLVPLLSLVDFKK 103
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH 172
S +QA+I+VPT ELG Q+ +A+ L + S L H
Sbjct: 104 SWIQALILVPTPELGFQIYLLAKSLCSSLSSYQLAH 139
>gi|334138519|ref|ZP_08511937.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF7]
gi|333603930|gb|EGL15326.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF7]
Length = 388
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 84 RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVI 143
++ E G PT +Q EA+P++ + RD I+ +QTG+GKTL +LL ++ VQA I
Sbjct: 17 KLKERGIGRPTAVQAEAIPLILTGRDAIVQSQTGTGKTLAFLLPALQRIDVNAKHVQAAI 76
Query: 144 VVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+VPTRELGMQ+ +VA L + P AL+ G L R LK
Sbjct: 77 IVPTRELGMQILRVAEDL--------IGDGPIKCQALIGGAALARQVEKLK 119
>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 559
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 61/91 (67%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +R++ E G +PT +Q+E++P+L +D I A+TG+GKTL ++L I ++ +R
Sbjct: 9 IDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQQIDPKR 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
+ QA+I+ PTREL +Q+T+ A+ L A D
Sbjct: 69 AYPQALIIAPTRELALQITEEAKKLTAGEPD 99
>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 405
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
N T ++L ++ + L+ +DE GY PT+IQ +A+P + + +D + AQTG+GKT
Sbjct: 3 NQGKTFKDL---NLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAA 59
Query: 124 YLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
+ + I VN ++ VQA+I+VPTREL +QV K + L ++K +A+ G
Sbjct: 60 FGVPIVEKVNPKQKKVQALILVPTRELAIQVAKEIKELG--------KNKKVYTLAVYGG 111
Query: 184 GMLRRHKSWLK 194
+ ++LK
Sbjct: 112 KSISHQINFLK 122
>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 405
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
N T ++L ++ + L+ +DE GY PT+IQ +A+P + + +D + AQTG+GKT
Sbjct: 3 NQGKTFKDL---NLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAA 59
Query: 124 YLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
+ + I VN ++ VQA+I+VPTREL +QV K + L ++K +A+ G
Sbjct: 60 FGVPIVEKVNPKQKKVQALILVPTRELAIQVAKEIKELG--------KNKKVYTLAVYGG 111
Query: 184 GMLRRHKSWLK 194
+ ++LK
Sbjct: 112 KSISHQINFLK 122
>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 538
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 60/91 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +R++ E G PT +Q+E++P+L +D I A+TG+GKTL ++L I ++ +R
Sbjct: 19 IDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHIDPKR 78
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
+ QA+IV PTREL +Q+T+ A+ L A D
Sbjct: 79 AYPQALIVAPTRELALQITEEAKKLTAGEPD 109
>gi|354581663|ref|ZP_09000566.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353200280|gb|EHB65740.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 524
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +R++ E G +PT +Q+E +P+L +D I A+TG+GKTL ++L I ++ R
Sbjct: 9 IDEQRVRKLKEQGIAVPTPVQQETIPLLLEGKDVIARARTGTGKTLAFMLPILQHIDPNR 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
QA+I+ PTREL +Q+T+ AR L A D
Sbjct: 69 PFPQALIIAPTRELALQITEEARKLTAGEPD 99
>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 538
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 60/91 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +R++ E G PT +Q+E++P+L +D I A+TG+GKTL ++L I ++ +R
Sbjct: 19 IDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHIDPKR 78
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
+ QA+I+ PTREL +Q+T+ A+ L A D
Sbjct: 79 AYPQALIIAPTRELALQITEEAKKLTAGEPD 109
>gi|433460136|ref|ZP_20417771.1| ATP-dependent RNA helicase [Halobacillus sp. BAB-2008]
gi|432191918|gb|ELK48837.1| ATP-dependent RNA helicase [Halobacillus sp. BAB-2008]
Length = 393
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
VP H++ ++ + G PTDIQ EA+P L RD I AQTG+GKT +LL I ++
Sbjct: 9 VPSHLVGKLKQQGVTSPTDIQVEAIPALMDGRDIIAEAQTGTGKTFAFLLPILHNIDPDL 68
Query: 137 SAVQAVIVVPTRELGMQVTK 156
+ VQ+V++ PTREL +Q+T+
Sbjct: 69 AEVQSVVITPTRELALQITE 88
>gi|365824887|ref|ZP_09366847.1| hypothetical protein HMPREF0045_00483 [Actinomyces graevenitzii
C83]
gi|365259075|gb|EHM89070.1| hypothetical protein HMPREF0045_00483 [Actinomyces graevenitzii
C83]
Length = 779
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 59/94 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +LR + + G+V PTDIQREA+PVL RD + AQTG+GKT + L + + V+++
Sbjct: 86 LPRDLLRAITDMGFVSPTDIQREAIPVLLEGRDVVGVAQTGTGKTAAFGLPLLNEVDSRD 145
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ +A + D+
Sbjct: 146 GEVQALVLAPTRELAMQSADAIADMAHRSRGLDV 179
>gi|310831360|ref|YP_003970003.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
virus BV-PW1]
gi|309386544|gb|ADO67404.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
virus BV-PW1]
Length = 384
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++L+ + G++ P+DIQ++ + V+ S +DCIL +Q+G+GKT TYLL ++ Q
Sbjct: 17 KNILKGVYSYGFINPSDIQQKGIGVIISKKDCILQSQSGTGKTATYLLGTLHNLDEQTKG 76
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
+Q VI+ PTREL QV VA+ LA
Sbjct: 77 IQTVIITPTRELAEQVYDVAKKLA 100
>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 397
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ + L+ +++ GY PT+IQ +A+P + S +D + AQTG+GKT + + I VN ++
Sbjct: 11 ISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIPIVESVNTKQ 70
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+QA+++VPTREL +QV K + L ++K V+++ G ++ +LK
Sbjct: 71 KKIQALVLVPTRELAIQVAKEIKDLG--------KNKKVFVLSVYGGKSMKHQIDFLK 120
>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
Length = 762
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 60/94 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + GYV PT IQREA+PVL S RD + AQTG+GKT + L + V+A+
Sbjct: 129 LPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVDARD 188
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL +Q + +A++ D+
Sbjct: 189 GEVQALVLAPTRELALQSAEAITDMASRSRGLDV 222
>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 460
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G PT IQ++ +P+L S +D I AQTG+GKTL ++L I ++A++S +QA+I+ PTR
Sbjct: 21 GITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPILEKIDAKKSYIQALILTPTR 80
Query: 149 ELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
EL +Q+T + LA+K V+A+ G + R L+
Sbjct: 81 ELALQITTEVKKLASKMD--------ANVLAVYGGQDVERQNKRLQ 118
>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 861
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 57 ELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQT 116
E+ A + +T +L +P +L+ + + G+V PT IQ+EA+PVL + RD + AQT
Sbjct: 151 EVKADQKDEGITFTDL---GLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQT 207
Query: 117 GSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
G+GKT + L + V+++ S VQA+++ PTREL +Q + +AA+ D+
Sbjct: 208 GTGKTAAFGLPLLDAVDSRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDV 261
>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 852
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + G+V PT IQ+EA+PVL S RD + AQTG+GKT + L + V+++
Sbjct: 154 LPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVDSRD 213
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
S VQA+++ PTREL +Q + +AA+ D+
Sbjct: 214 SVVQALVLAPTRELALQSAEAITDMAARSRGLDV 247
>gi|422011059|ref|ZP_16357928.1| DEAD/DEAH box helicase [Actinomyces georgiae F0490]
gi|394766753|gb|EJF47752.1| DEAD/DEAH box helicase [Actinomyces georgiae F0490]
Length = 773
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 45 RAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVL 104
RA +V + TG ++++ +L +P+ +L+ + + G+V PT IQ EA+P L
Sbjct: 59 RAAEDGGSVEAPDEEGSTGEDTVSFADL---GLPDELLQAVTDMGFVAPTPIQAEAIPPL 115
Query: 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
RD + AQTG+GKT + L + ++ +A AVQA+++ PTREL MQ AA+
Sbjct: 116 LDLRDVVGIAQTGTGKTAAFGLPLLAIADADEKAVQALVLAPTRELAMQSAAAIEDFAAR 175
Query: 165 PSD 167
++
Sbjct: 176 TAE 178
>gi|224002507|ref|XP_002290925.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972701|gb|EED91032.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 537
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 17/96 (17%)
Query: 85 MDETGYVLPTDIQREALPVLFSS-----------------RDCILHAQTGSGKTLTYLLL 127
M GYV PT +Q L +L + D I+HAQTGSGKTL YLL
Sbjct: 1 MANLGYVNPTLLQSRVLDILLPTLDTSTSTNESSEQQNQPSDVIIHAQTGSGKTLAYLLP 60
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ S ++ RSAVQA++VVPTRELG+QV +VAR L
Sbjct: 61 LLSRIDPSRSAVQALVVVPTRELGLQVVRVARRLCG 96
>gi|115447485|ref|NP_001047522.1| Os02g0636300 [Oryza sativa Japonica Group]
gi|75323584|sp|Q6H874.1|RH47A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47A
gi|49387967|dbj|BAD25075.1| DEAD/DEAH box helicase-like [Oryza sativa Japonica Group]
gi|113537053|dbj|BAF09436.1| Os02g0636300 [Oryza sativa Japonica Group]
gi|215713571|dbj|BAG94708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623309|gb|EEE57441.1| hypothetical protein OsJ_07650 [Oryza sativa Japonica Group]
Length = 573
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 22/169 (13%)
Query: 38 SISWKPLRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQ 97
S + KP+++ L SAV + L + + + + +P ++ R+++ G PT++Q
Sbjct: 101 SFNAKPVKSALPKSAVLKKTLK--IDESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQ 158
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA-----------QRSAVQAVIVVP 146
A+P++ D ++ + TGSGKTL YLL I S + +RS V+AVIV P
Sbjct: 159 SAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEAVIVAP 218
Query: 147 TRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+RELGMQ+ + V ++L P+D L V L+ G R + LK
Sbjct: 219 SRELGMQIVREVEKILG--PNDKRL------VQQLVGGANRSRQEEALK 259
>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein, partial
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 375
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
++R++ G V PT +Q A+PVL S D I+ AQTG+GKTL +LL I + +R Q
Sbjct: 14 LVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLPILEKIRPERPEAQ 73
Query: 141 AVIVVPTRELGMQVTKVARVLA 162
A+I+ PTREL +Q+T AR LA
Sbjct: 74 ALIITPTRELAIQITAEARKLA 95
>gi|357012189|ref|ZP_09077188.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 474
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ ++R+ E G P+DIQ +A+P+ +D + +QTG+GKTL Y L + ++
Sbjct: 9 HIAPQYVKRLQELGITEPSDIQADAIPIALEGKDVVAQSQTGTGKTLAYSLPLLHKIDTS 68
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
VQA+++VPTRELGMQ+ + L D+D+ V L+ G + R LK+
Sbjct: 69 AREVQALVLVPTRELGMQIVQTLEQLV---KDSDVR-----VQQLIGGASIERQIDRLKL 120
>gi|146319393|ref|YP_001199105.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
gi|146321596|ref|YP_001201307.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
gi|253752416|ref|YP_003025557.1| helicase [Streptococcus suis SC84]
gi|253754242|ref|YP_003027383.1| helicase [Streptococcus suis P1/7]
gi|253756176|ref|YP_003029316.1| helicase [Streptococcus suis BM407]
gi|386578558|ref|YP_006074964.1| putative ATP-dependent RNA helicase [Streptococcus suis GZ1]
gi|386580630|ref|YP_006077035.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|386582703|ref|YP_006079107.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|386588826|ref|YP_006085227.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|403062174|ref|YP_006650390.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
gi|145690199|gb|ABP90705.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145692402|gb|ABP92907.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|251816705|emb|CAZ52347.1| putative helicase [Streptococcus suis SC84]
gi|251818640|emb|CAZ56475.1| putative helicase [Streptococcus suis BM407]
gi|251820488|emb|CAR47236.1| putative helicase [Streptococcus suis P1/7]
gi|292559021|gb|ADE32022.1| putative ATP-dependent RNA helicase [Streptococcus suis GZ1]
gi|319758822|gb|ADV70764.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|353734849|gb|AER15859.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|354985987|gb|AER44885.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|402809500|gb|AFR00992.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
Length = 447
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E +V PT++Q + +PV+ S RD I ++TGSGKT T+L+ IF +N + V
Sbjct: 11 YIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLNEELDQV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QAVI P+REL Q+ + AR LA+ SDT++
Sbjct: 71 QAVITAPSRELATQIYQAARQLASH-SDTEV 100
>gi|440780973|ref|ZP_20959444.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
gi|440221561|gb|ELP60766.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
Length = 367
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E ++ + +TG PT IQ+E++ + + RD I AQTG+GKTL +LL IF ++
Sbjct: 8 ISEDIINTLKKTGITEPTVIQKESIRFIKNGRDIIAEAQTGTGKTLAFLLPIFENISVNS 67
Query: 137 SAVQAVIVVPTRELGMQVTKVA 158
SA+QA+IV PTREL +Q+T+ A
Sbjct: 68 SAIQALIVTPTRELAIQITEEA 89
>gi|386713333|ref|YP_006179656.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
gi|384072889|emb|CCG44380.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
Length = 395
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V + + ++ + G PT IQ+EA+P L RD I AQTG+GKT +LL I +
Sbjct: 10 VRKDFIDKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLPILQNIRVDE 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL 161
++VQAVIV PTREL +Q+T+ R L
Sbjct: 70 ASVQAVIVTPTRELALQITEEVRKL 94
>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase, partial [Actinomyces sp. oral taxon 178
str. F0338]
gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 800
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P+ +L+ + + G+V PT IQ EA+P L RD + AQTG+GKT + L + ++V+A
Sbjct: 57 LPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLLAIVDADE 116
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
AVQA+++ PTREL MQ AA+ ++
Sbjct: 117 KAVQALVLAPTRELAMQSAAAIEDFAARTAE 147
>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 461
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++ + G V PT IQRE++PV +D I AQTG+GKT ++L I +N +
Sbjct: 12 EEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQKINKNQKD 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQA+I+ PTREL +Q+T A+ +A
Sbjct: 72 VQALILAPTRELALQITTEAKKIA 95
>gi|115451605|ref|NP_001049403.1| Os03g0219700 [Oryza sativa Japonica Group]
gi|122247355|sp|Q10PV9.1|RH47B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47B
gi|108706885|gb|ABF94680.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113547874|dbj|BAF11317.1| Os03g0219700 [Oryza sativa Japonica Group]
gi|125542928|gb|EAY89067.1| hypothetical protein OsI_10553 [Oryza sativa Indica Group]
gi|125585426|gb|EAZ26090.1| hypothetical protein OsJ_09947 [Oryza sativa Japonica Group]
gi|215701156|dbj|BAG92580.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 573
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 22/169 (13%)
Query: 38 SISWKPLRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQ 97
S + KP ++ L SAV + L + + + + +P ++ R+++ G PT++Q
Sbjct: 101 SFNSKPAKSTLPKSAVVKKTLK--IDESLFSAKSFEELGLPPLLIDRLNKEGLSTPTEVQ 158
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA-----------QRSAVQAVIVVP 146
A+P++ D ++ + TGSGKTL YLL I S + +RS V+AVIV P
Sbjct: 159 SAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAP 218
Query: 147 TRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+RELGMQ+ + V ++L P+D L V L+ G R + LK
Sbjct: 219 SRELGMQIVREVEKILG--PNDKRL------VQQLVGGANRSRQEEALK 259
>gi|301300913|ref|ZP_07207085.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300851512|gb|EFK79224.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 440
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++ + +DE + PT++Q +P + + + +QTGSGKT T+LL IF +NAQ+
Sbjct: 11 EYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQKDE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDT 168
VQAVI P+REL Q+ + A+ LA S+
Sbjct: 71 VQAVITTPSRELAYQIYEAAKQLAKFSSEN 100
>gi|420151984|ref|ZP_14659060.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
gi|394765683|gb|EJF47049.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
Length = 830
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + GY PTDIQREA+PVL S RD + AQTG+GKT + L + V A+
Sbjct: 147 LPADLLKAVTDMGYQNPTDIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVEARE 206
Query: 137 SAVQAVIVVPTRELGMQ 153
VQA+++ PTREL +Q
Sbjct: 207 PVVQALVLAPTRELALQ 223
>gi|385840656|ref|YP_005863980.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|300214777|gb|ADJ79193.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
Length = 440
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++ + +DE + PT++Q +P + + + +QTGSGKT T+LL IF +NAQ+
Sbjct: 11 EYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQKDE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQAVI P+REL Q+ + A+ LA
Sbjct: 71 VQAVITTPSRELAYQIYEAAKQLA 94
>gi|227891108|ref|ZP_04008913.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
gi|417788678|ref|ZP_12436361.1| ATP-dependent RNA helicase YqfR [Lactobacillus salivarius NIAS840]
gi|417810036|ref|ZP_12456717.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
gi|418961607|ref|ZP_13513492.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
gi|227866982|gb|EEJ74403.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
gi|334308855|gb|EGL99841.1| ATP-dependent RNA helicase YqfR [Lactobacillus salivarius NIAS840]
gi|335350960|gb|EGM52456.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
gi|380343702|gb|EIA32050.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
Length = 440
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++ + +DE + PT++Q +P + + + +QTGSGKT T+LL IF +NAQ+
Sbjct: 11 EYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQKDE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQAVI P+REL Q+ + A+ LA
Sbjct: 71 VQAVITTPSRELAYQIYEAAKQLA 94
>gi|90962087|ref|YP_536003.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|90821281|gb|ABD99920.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
Length = 440
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++ + +DE + PT++Q +P + + + +QTGSGKT T+LL IF +NAQ+
Sbjct: 11 EYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQKDE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQAVI P+REL Q+ + A+ LA
Sbjct: 71 VQAVITTPSRELAYQIYEAAKQLA 94
>gi|379718419|ref|YP_005310550.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378567091|gb|AFC27401.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 578
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
GY PT IQREA+P + D I AQTG+GKTL ++L I ++ RS VQA+IV PTR
Sbjct: 23 GYNEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNRSHVQALIVTPTR 82
Query: 149 ELGMQVT-KVAR 159
EL +Q+T +VAR
Sbjct: 83 ELAIQITEEVAR 94
>gi|209559794|ref|YP_002286266.1| ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
gi|209540995|gb|ACI61571.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
Length = 447
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 58/87 (66%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDET 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ V + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDVCKQIA 93
>gi|386720987|ref|YP_006187312.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384088111|gb|AFH59547.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 425
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
GY PT IQREA+P + D I AQTG+GKTL ++L I ++ RS VQA+IV PTR
Sbjct: 23 GYHEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNRSHVQALIVTPTR 82
Query: 149 ELGMQVT-KVAR 159
EL +Q+T +VAR
Sbjct: 83 ELAIQITEEVAR 94
>gi|337744819|ref|YP_004638981.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336296008|gb|AEI39111.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 425
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
GY PT IQREA+P + D I AQTG+GKTL ++L I ++ RS VQA+IV PTR
Sbjct: 23 GYHEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNRSHVQALIVTPTR 82
Query: 149 ELGMQVT-KVAR 159
EL +Q+T +VAR
Sbjct: 83 ELAIQITEEVAR 94
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +H + + E G PT +Q+E++P+L +D I A TG+GKTL +LL I +N +
Sbjct: 9 VEQHWVDALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKMNLDK 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAA-KPS 166
QA+++ PTREL +Q+T+ A +LAA +PS
Sbjct: 69 RHPQALVIAPTRELALQITQEANILAATEPS 99
>gi|417937147|ref|ZP_12580452.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343399189|gb|EGV11712.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 396
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 59/92 (64%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q +++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTQFKFKKYIEKALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ + +VQAVI P+REL Q+ + AR +AA
Sbjct: 63 LDEESDSVQAVITAPSRELATQIYQAARQIAA 94
>gi|389857247|ref|YP_006359490.1| DEAD/DEAH box helicase [Streptococcus suis ST1]
gi|353740965|gb|AER21972.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST1]
Length = 447
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E +V PT++Q + +PV+ S RD I ++TGSGKT T+L+ IF +N + V
Sbjct: 11 YIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLNEELDQV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
QAVI P+REL Q+ + AR LA S +D+E
Sbjct: 71 QAVIPAPSRELATQIYQAARQLA---SHSDIE 99
>gi|421892866|ref|ZP_16323463.1| ATP-dependent RNA helicase YqfR [Streptococcus pyogenes NS88.2]
gi|379981331|emb|CCG27185.1| ATP-dependent RNA helicase YqfR [Streptococcus pyogenes NS88.2]
Length = 447
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H +++ + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYIQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDKA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA-KPSDTDL 170
++ VQ VI P+REL +Q+ + +A P D L
Sbjct: 67 KAEVQVVITAPSRELAIQIFDACKQIAKHSPKDIRL 102
>gi|160915042|ref|ZP_02077255.1| hypothetical protein EUBDOL_01050 [Eubacterium dolichum DSM 3991]
gi|158432841|gb|EDP11130.1| DEAD/DEAH box helicase [Eubacterium dolichum DSM 3991]
Length = 466
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
L++R+ H EH + G++ PT IQ+E LP+ ++ + + TG+GKT
Sbjct: 8 EGGLSMRKFSDYHFKEHTKAFLKLEGFIEPTPIQQEVLPLACKGKNIVGISDTGTGKTHA 67
Query: 124 YLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
+L+ IF +N + AVQAVI PTREL +Q+ + R L K E P + L+ G
Sbjct: 68 FLIPIFEKINIDKQAVQAVITAPTRELALQIYQ--RSLTMK------EACPKLAIRLITG 119
Query: 184 GMLR-RHKSWLKV 195
GM + R LKV
Sbjct: 120 GMEKTRMNEQLKV 132
>gi|220927583|ref|YP_002504492.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|219997911|gb|ACL74512.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 437
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 53/71 (74%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PTDIQ++A+P +RD ILH+ TG+GKTL YLL +F ++A++ +QA+I+VPT EL
Sbjct: 25 VPTDIQQKAIPEALKNRDVILHSSTGTGKTLAYLLPLFMKLSAEKKEMQALILVPTHELA 84
Query: 152 MQVTKVARVLA 162
+QV + +L+
Sbjct: 85 IQVVRQIELLS 95
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +H + + E G PT +Q+E++P+L +D I A TG+GKTL +LL I +N +
Sbjct: 19 VEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK 78
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL-AAKPS 166
QA+++ PTREL +Q+T+ A+ L AA+PS
Sbjct: 79 RHPQALVIAPTRELALQITEEAKCLAAAEPS 109
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +H + + E G PT +Q+E++P+L +D I A TG+GKTL +LL I +N +
Sbjct: 9 VEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL-AAKPS 166
QA+++ PTREL +Q+T+ A+ L AA+PS
Sbjct: 69 RHPQALVIAPTRELALQITEEAKCLAAAEPS 99
>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
Length = 641
Score = 76.3 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 58/89 (65%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
S T+ E Q + E +L +DE G+V PT IQ E++P+L + RD + AQTG+GKT +
Sbjct: 2 SETITEFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFS 61
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + +N ++ QA+I+ PTREL +QV
Sbjct: 62 LPLLNKINLKQHNPQAIIMAPTRELAIQV 90
>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 426
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G PT +Q +A+P + + RD I AQTG+GKTL YLL + + + Q +A QA+++
Sbjct: 17 LQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLARIKPQGAAAQALVI 76
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL +Q+ +VA LA
Sbjct: 77 APTRELAIQIERVAEPLA 94
>gi|395454421|dbj|BAM30760.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 476]
Length = 497
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|21910935|ref|NP_665203.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
gi|28895375|ref|NP_801725.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
gi|21905142|gb|AAM80006.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS315]
gi|28810621|dbj|BAC63558.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
Length = 447
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|375311036|ref|ZP_09776294.1| hypothetical protein WG8_4828, partial [Paenibacillus sp. Aloe-11]
gi|375076910|gb|EHS55160.1| hypothetical protein WG8_4828, partial [Paenibacillus sp. Aloe-11]
Length = 345
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +H + + E G PT +Q+E++P+L +D I A TG+GKTL +LL I +N ++
Sbjct: 9 VEQHWVDVLKEQGITAPTPVQQESIPLLMQDQDVIAEAHTGTGKTLAFLLPILQKMNLEK 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAA 163
QA+++ PTREL +Q+T+ A+ LAA
Sbjct: 69 RYPQALVIAPTRELALQITEEAKRLAA 95
>gi|19746579|ref|NP_607715.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
gi|94994869|ref|YP_602967.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|139473299|ref|YP_001128014.1| ATP-dependent RNA helicase [Streptococcus pyogenes str. Manfredo]
gi|19748794|gb|AAL98214.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS8232]
gi|94548377|gb|ABF38423.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|134271545|emb|CAM29769.1| putative helicase [Streptococcus pyogenes str. Manfredo]
Length = 447
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|428307830|ref|YP_007144655.1| DEAD/DEAH box helicase [Crinalium epipsammum PCC 9333]
gi|428249365|gb|AFZ15145.1| DEAD/DEAH box helicase domain protein [Crinalium epipsammum PCC
9333]
Length = 467
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E V ++ E G+ PT IQ +A+P L + RD + +QTG+GKT + L I ++ Q A
Sbjct: 12 ETVANQLKELGFTEPTTIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILDRIDVQNPA 71
Query: 139 VQAVIVVPTRELGMQVTKVARVL 161
VQA+I+ PTREL +QVT+ R
Sbjct: 72 VQALILTPTRELALQVTQAIRTF 94
>gi|71904068|ref|YP_280870.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71803163|gb|AAX72516.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
Length = 447
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|22536473|ref|NP_687324.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|25010353|ref|NP_734748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76787716|ref|YP_329013.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|77404947|ref|ZP_00782048.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77410606|ref|ZP_00786966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406708812|ref|YP_006763538.1| DEAD/DEAH box helicase [Streptococcus agalactiae GD201008-001]
gi|424050047|ref|ZP_17787597.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|22533303|gb|AAM99196.1|AE014204_14 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
gi|23094705|emb|CAD45924.1| unknown [Streptococcus agalactiae NEM316]
gi|76562773|gb|ABA45357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|77163321|gb|EAO74272.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77176386|gb|EAO79154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648453|gb|EIM69958.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406649697|gb|AFS45098.1| DEAD/DEAH box helicase [Streptococcus agalactiae GD201008-001]
Length = 447
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ V
Sbjct: 11 YIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+RELG Q+ + + +A
Sbjct: 71 QVVITAPSRELGTQIYQATKQIA 93
>gi|418069523|ref|ZP_12706800.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|357536054|gb|EHJ20085.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 453
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+ E + ++ +++ +D+ G+V PT +Q +P++ + + +QTGSGKT +LL I
Sbjct: 1 MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
F+ ++ ++A+QAVI P+REL Q+ + A+ LAA S+T +E
Sbjct: 61 FNQIDPAKNAIQAVITTPSRELAYQIYEAAKQLAAA-SETSIE 102
>gi|383480389|ref|YP_005389283.1| helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|383494371|ref|YP_005412047.1| helicase SrmB [Streptococcus pyogenes MGAS1882]
gi|378928379|gb|AFC66585.1| helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|378930098|gb|AFC68515.1| helicase SrmB [Streptococcus pyogenes MGAS1882]
Length = 447
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDET 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|94988990|ref|YP_597091.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94992883|ref|YP_600982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
gi|417856455|ref|ZP_12501514.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|94542498|gb|ABF32547.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94544498|gb|ABF34546.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
gi|94546391|gb|ABF36438.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
gi|387933410|gb|EIK41523.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 447
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|15675529|ref|NP_269703.1| ATP-dependent RNA helicase [Streptococcus pyogenes SF370]
gi|71911177|ref|YP_282727.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|410681027|ref|YP_006933429.1| DEAD/DEAH box helicase [Streptococcus pyogenes A20]
gi|13622729|gb|AAK34424.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
gi|71853959|gb|AAZ51982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|409693616|gb|AFV38476.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus pyogenes
A20]
Length = 447
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|417937595|ref|ZP_12580895.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391859|gb|EGV04432.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 473
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q +++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ + +VQAVI P+REL Q+ + AR +AA
Sbjct: 63 LDEESDSVQAVITAPSRELATQIYQAARQIAA 94
>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
Length = 865
Score = 75.9 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 59/88 (67%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + G+V PT IQ+EA+PVL + RD + AQTG+GKT + L + V+++
Sbjct: 169 LPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRD 228
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAK 164
+ VQA+++ PTREL +Q + +AA+
Sbjct: 229 NVVQALVLAPTRELALQSAEAITDMAAR 256
>gi|400291576|ref|ZP_10793581.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
gi|399903303|gb|EJN86053.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
Length = 860
Score = 75.9 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 60/94 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + G+V PT IQ+EA+PVL + RD + AQTG+GKT + L + V+++
Sbjct: 168 LPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRD 227
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL +Q + +A++ D+
Sbjct: 228 GVVQALVLAPTRELALQSAEAITDMASRSRGLDV 261
>gi|403379387|ref|ZP_10921444.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
JC66]
Length = 416
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+H ++++ + PT +Q++A+P L +D I+ +QTGSGKTL YLL + ++ +
Sbjct: 12 KHWIKKLADMNITNPTPVQQQAIPHLLEGKDLIIESQTGSGKTLAYLLPLLEKIDPASNR 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
V+AVI+ PT EL MQV KV L ++ V AL+ G ++R LK+
Sbjct: 72 VEAVILTPTHELAMQVVKVTESL--------IDPSSLKVQALIGGASVKRQVERLKL 120
>gi|390454874|ref|ZP_10240402.1| DEAD/DEAH box helicase [Paenibacillus peoriae KCTC 3763]
Length = 524
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +H + + E G PT +Q+E++P+L +D I A TG+GKTL +LL I +N ++
Sbjct: 9 VEQHWVDVLKEQGITAPTPVQQESIPLLMQDQDVIAEAHTGTGKTLAFLLPILQKMNLEK 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAA 163
QA+++ PTREL +Q+T+ A+ LAA
Sbjct: 69 RYPQALVIAPTRELALQITEEAKRLAA 95
>gi|76798781|ref|ZP_00780996.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
gi|76585865|gb|EAO62408.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
Length = 359
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ V
Sbjct: 11 YIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+RELG Q+ + + +A
Sbjct: 71 QVVITAPSRELGTQIYQATKQIA 93
>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
20284]
gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
20284]
Length = 453
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+ E + ++ +++ +D+ G+V PT +Q +P++ + + +QTGSGKT +LL I
Sbjct: 1 MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
F+ ++ ++A+QAVI P+REL Q+ + A+ LAA S+T +E
Sbjct: 61 FNQIDPAKNAIQAVITTPSRELAYQIYEAAKQLAAA-SETPIE 102
>gi|164659183|ref|XP_001730716.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
gi|159104613|gb|EDP43502.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
Length = 502
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 12/110 (10%)
Query: 56 EELAAGTGNNSLTL---RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
E++ A GN+ REL G + E G+ P+ IQ EA+P+ S RD +
Sbjct: 22 EDVTATKGNDFEDFFLKRELLMG---------IFEAGFEHPSPIQEEAIPIALSGRDVLA 72
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT Y++ VN +++ +QAV++VPTREL +Q ++VA+ L
Sbjct: 73 RAKNGTGKTAAYVIPTLERVNTKKNKIQAVLLVPTRELALQTSQVAKTLG 122
>gi|325068862|ref|ZP_08127535.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
Length = 470
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
+ +T +L +P +L+ + + G+V PT IQ+EA+PVL + RD + AQTG+GKT
Sbjct: 171 DEEITFADLG---LPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAA 227
Query: 124 YLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
+ L + V+++ + VQA+++ PTREL +Q + +AA+
Sbjct: 228 FGLPLLDAVDSRDNVVQALVLAPTRELALQSAEAITDMAAR 268
>gi|270290969|ref|ZP_06197192.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
gi|270280365|gb|EFA26200.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
Length = 453
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+ E + ++ +++ +D+ G+V PT +Q +P++ + + +QTGSGKT +LL I
Sbjct: 1 MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
F+ ++ ++A+QAVI P+REL Q+ + A+ LAA S+T +E
Sbjct: 61 FNQIDPAKNAIQAVITTPSRELAYQIYEAAKQLAAA-SETPIE 102
>gi|306826916|ref|ZP_07460216.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
pyogenes ATCC 10782]
gi|304430934|gb|EFM33943.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
pyogenes ATCC 10782]
Length = 453
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H +++ + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYIQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDET 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|402297516|ref|ZP_10817285.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401727307|gb|EJT00499.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 379
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE V+ + + G PTDIQ + +P S +D + +QTG+GKTL +LL + + + +
Sbjct: 10 LPESVIEALAKLGVNEPTDIQEKMIPEALSGQDIVARSQTGTGKTLAFLLPLLAKIAKDK 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL 161
+QA+IV PT+EL MQ+ +V RVL
Sbjct: 70 KGLQALIVAPTQELAMQIVEVTRVL 94
>gi|421276593|ref|ZP_15727414.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus mitis
SPAR10]
gi|395876799|gb|EJG87871.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus mitis
SPAR10]
Length = 447
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q +++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTQFKFKKYIEKALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
++ + +VQAVI P+REL Q+ + AR +A S +D+E
Sbjct: 63 LDEESDSVQAVITAPSRELATQIYQAARQIA---SHSDVE 99
>gi|50914756|ref|YP_060728.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
gi|386363208|ref|YP_006072539.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus pyogenes
Alab49]
gi|50903830|gb|AAT87545.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
gi|350277617|gb|AEQ24985.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus pyogenes
Alab49]
Length = 447
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++V + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYVQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|411118915|ref|ZP_11391295.1| DNA/RNA helicase, superfamily II [Oscillatoriales cyanobacterium
JSC-12]
gi|410710778|gb|EKQ68285.1| DNA/RNA helicase, superfamily II [Oscillatoriales cyanobacterium
JSC-12]
Length = 505
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAV 142
R ++E G+ PT IQ +A+P L S RD + AQTG+GKT + L I ++ + SAVQA+
Sbjct: 16 RYLEEMGFTTPTPIQAQAIPHLLSGRDVVGQAQTGTGKTAAFSLPIMERIDVKSSAVQAL 75
Query: 143 IVVPTRELGMQVTKVAR 159
I+ PTREL +QV + R
Sbjct: 76 ILTPTRELALQVCQAIR 92
>gi|343522586|ref|ZP_08759552.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
gi|343401995|gb|EGV14501.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
Length = 865
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 59/88 (67%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + G+V PT IQ+EA+PVL + RD + AQTG+GKT + L + V+++
Sbjct: 169 LPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRD 228
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAK 164
+ VQA+++ PTREL +Q + +AA+
Sbjct: 229 NVVQALVLAPTRELALQSAEAITDMAAR 256
>gi|294932985|ref|XP_002780540.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239890474|gb|EER12335.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 525
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+R QG PE +++ +D+ GY PT+IQ+ PV S RD + AQTGSGKT+ ++L
Sbjct: 166 IRTFEQGQFPEVLMKELDKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPA 225
Query: 129 FSLVNAQRSAVQA-----VIVVPTRELGMQV 154
VNAQ +++VPTREL MQV
Sbjct: 226 IIHVNAQAPLKHGDGPVVLVLVPTRELAMQV 256
>gi|365827385|ref|ZP_09369246.1| hypothetical protein HMPREF0975_01029 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265140|gb|EHM94916.1| hypothetical protein HMPREF0975_01029 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 853
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 60/94 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + G+V PT IQ+EA+PVL + RD + AQTG+GKT + L + V+++
Sbjct: 166 LPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRD 225
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL +Q + +A++ D+
Sbjct: 226 GVVQALVLAPTRELALQSAEAITDMASRSRGLDV 259
>gi|422759601|ref|ZP_16813363.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412436|gb|EFY03344.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 447
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H +++ + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA-KPSDTDL 170
++ VQ VI P+REL Q+ + +A P D L
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIAKHSPKDIRL 102
>gi|79342966|ref|NP_172737.2| DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana]
gi|108861896|sp|Q8W4E1.2|RH47_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 47,
mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE
1586; AltName: Full=Protein INCREASED SIZE EXCLUSION
LIMIT 1; Flags: Precursor
gi|12056979|gb|AAF88089.2|AC025417_17 T12C24.30 [Arabidopsis thaliana]
gi|51969316|dbj|BAD43350.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51969564|dbj|BAD43474.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51969644|dbj|BAD43514.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51969728|dbj|BAD43556.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51970230|dbj|BAD43807.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51970530|dbj|BAD43957.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|110739597|dbj|BAF01707.1| hypothetical protein [Arabidopsis thaliana]
gi|110740002|dbj|BAF01905.1| hypothetical protein [Arabidopsis thaliana]
gi|110740576|dbj|BAE98393.1| hypothetical protein [Arabidopsis thaliana]
gi|332190805|gb|AEE28926.1| DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana]
Length = 551
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 13/93 (13%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P+ +L ++ G+ +PTD+Q A+P + D ++ + TGSGKTL YLL I S +
Sbjct: 117 LPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLA 176
Query: 133 ---------NAQRSAVQAVIVVPTRELGMQVTK 156
N +R+ +QA+IV P+RELGMQ+ +
Sbjct: 177 EKSRSSHSENDKRTEIQAMIVAPSRELGMQIVR 209
>gi|399523842|ref|ZP_10764443.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398375104|gb|EJN52568.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 722
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 59 AAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGS 118
A G +++T L +PE +L + + G+ +PT IQ A+P L RD + AQTG+
Sbjct: 39 ADGEDGDTVTFASL---GLPEEILEAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGT 95
Query: 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
GKT + L + ++V+A VQA+++ PTREL MQ + AA+ + D+
Sbjct: 96 GKTAAFGLPLLAIVDADERDVQALVLAPTRELAMQSAQAIEDFAARTARLDV 147
>gi|386584760|ref|YP_006081163.1| DEAD/DEAH box helicase [Streptococcus suis D9]
gi|353736906|gb|AER17915.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D9]
Length = 447
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E +V PT++Q + +PV+ S RD I ++TGSGKT T+L+ IF ++ + V
Sbjct: 11 YIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLSEELDQV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
QAVI P+REL Q+ + AR LA S +D+E
Sbjct: 71 QAVITAPSRELATQIYQAARQLA---SHSDIE 99
>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
Length = 892
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV- 139
+L+++ G+ PT IQ+ ++PV+ RD I A+TGSGKT++YL +F ++ + S++
Sbjct: 49 LLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFERLDYKHSSIV 108
Query: 140 --QAVIVVPTRELGMQVTKVARVLAAKPSD 167
+AVI+VPTREL +QV KV K SD
Sbjct: 109 GARAVIIVPTRELVLQVNKVIYDFIGKTSD 138
>gi|17065084|gb|AAL32696.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|21387213|gb|AAM48010.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
Length = 551
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 13/93 (13%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P+ +L ++ G+ +PTD+Q A+P + D ++ + TGSGKTL YLL I S +
Sbjct: 117 LPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLA 176
Query: 133 ---------NAQRSAVQAVIVVPTRELGMQVTK 156
N +R+ +QA+IV P+RELGMQ+ +
Sbjct: 177 EKSRSSHSENDKRTEIQAMIVAPSRELGMQIVR 209
>gi|297844170|ref|XP_002889966.1| EMB1586 [Arabidopsis lyrata subsp. lyrata]
gi|297335808|gb|EFH66225.1| EMB1586 [Arabidopsis lyrata subsp. lyrata]
Length = 551
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 13/93 (13%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P+ +L ++ G+ +PTD+Q A+P + D ++ + TGSGKTL YLL I S +
Sbjct: 117 LPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLA 176
Query: 133 ---------NAQRSAVQAVIVVPTRELGMQVTK 156
N +R+ +QA+IV P+RELGMQ+ +
Sbjct: 177 EKSRSSHSENDKRTDIQAMIVAPSRELGMQIVR 209
>gi|223933109|ref|ZP_03625101.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|302024360|ref|ZP_07249571.1| helicase [Streptococcus suis 05HAS68]
gi|330833357|ref|YP_004402182.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
suis ST3]
gi|417092247|ref|ZP_11956981.1| DEAD/DEAH box helicase domain protein [Streptococcus suis R61]
gi|223898170|gb|EEF64539.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|329307580|gb|AEB81996.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
gi|353532816|gb|EHC02485.1| DEAD/DEAH box helicase domain protein [Streptococcus suis R61]
Length = 447
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E +V PT++Q + +PV+ S RD I ++TGSGKT T+L+ IF ++ + V
Sbjct: 11 YIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLSEELDQV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
QAVI P+REL Q+ + AR LA S +D+E
Sbjct: 71 QAVITAPSRELATQIYQAARQLA---SHSDIE 99
>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
Length = 580
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
N+L +L + +L+ ++E GY P+ IQ +A+P + RD I AQTG+GKT +
Sbjct: 3 NTLKFSDLG---ISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAF 59
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGG 184
+ I LV+ + VQAVI+ PTREL +QV + LA H+ +A+ G
Sbjct: 60 GIPIIDLVDPDFNKVQAVILCPTRELAVQVEGEIQKLAKY-------HRKINSVAIYGGE 112
Query: 185 MLRRH 189
+ R
Sbjct: 113 SIDRQ 117
>gi|335029090|ref|ZP_08522602.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus infantis
SK1076]
gi|334269491|gb|EGL87908.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus infantis
SK1076]
Length = 447
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 58/91 (63%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q +++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTQFKFKKYIEKALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
++ + +VQAVI P+REL Q+ + AR +A
Sbjct: 63 LDEESDSVQAVITAPSRELATQIYQAARQIA 93
>gi|428204428|ref|YP_007083017.1| DNA/RNA helicase [Pleurocapsa sp. PCC 7327]
gi|427981860|gb|AFY79460.1| DNA/RNA helicase, superfamily II [Pleurocapsa sp. PCC 7327]
Length = 472
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%)
Query: 82 LRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA 141
+++++ G++ PT+IQ +A+P+L RD + +QTG+GKT Y L I ++ Q SAVQA
Sbjct: 15 VKQLENLGFINPTNIQAQAIPLLLEGRDVVGQSQTGTGKTAAYSLPILDAIDTQNSAVQA 74
Query: 142 VIVVPTRELGMQVTK 156
+++ PTREL QV +
Sbjct: 75 LVLTPTRELAQQVAE 89
>gi|414564644|ref|YP_006043605.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|338847709|gb|AEJ25921.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 447
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++ +DE G+V PT++Q+ +P++ + RD + ++TGSGKT T+LL IF + +
Sbjct: 7 HFKHYIQEALDELGFVEPTEVQQRLIPIVSTGRDLVGESKTGSGKTHTFLLPIFEKLKEE 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
+ VQAVI P+REL Q+ + +R +A
Sbjct: 67 KEEVQAVITAPSRELATQIFEASRQIA 93
>gi|195978686|ref|YP_002123930.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225867995|ref|YP_002743943.1| helicase [Streptococcus equi subsp. zooepidemicus]
gi|225871089|ref|YP_002747036.1| helicase [Streptococcus equi subsp. equi 4047]
gi|195975391|gb|ACG62917.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225700493|emb|CAW94932.1| putative helicase [Streptococcus equi subsp. equi 4047]
gi|225701271|emb|CAW98252.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
Length = 447
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++ +DE G+V PT++Q+ +P++ + RD + ++TGSGKT T+LL IF + +
Sbjct: 7 HFKHYIQEALDELGFVEPTEVQQRLIPIVSTGRDLVGESKTGSGKTHTFLLPIFEKLKEE 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
+ VQAVI P+REL Q+ + +R +A
Sbjct: 67 KEEVQAVITAPSRELATQIFEASRQIA 93
>gi|339451963|ref|ZP_08655333.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc lactis KCTC 3528]
Length = 250
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
T + Q ++ ++ + + G+ PT +Q + +P + +D + +QTGSGKT T+L+
Sbjct: 4 TANQFGQFNLKPEIIIALTKIGFTKPTPVQAKLIPAILQGKDVVGQSQTGSGKTHTFLIP 63
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
IF+ + R VQAVI P+REL Q+TK A+ A++
Sbjct: 64 IFNQLEQDRQYVQAVITTPSRELAAQITKAAKDFASQ 100
>gi|402814213|ref|ZP_10863807.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402508060|gb|EJW18581.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 487
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G +PT +Q E +PV+ S D + AQTG+GKTL +LL I ++A + VQA+IV
Sbjct: 5 LNQNGIAVPTPVQAETIPVVLSGEDVVSQAQTGTGKTLAFLLPIIQRIDAGSTHVQALIV 64
Query: 145 VPTRELGMQVTKVARVL 161
PTREL +Q+T A+ L
Sbjct: 65 APTRELALQITAEAKKL 81
>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 417
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q V E ++ ++ TG +PT +Q A+P L + RD I AQTG GKTL++++ +F
Sbjct: 5 FAQLKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLFDK 64
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
V+ Q+ VQA+I+ PTREL Q R L
Sbjct: 65 VDPQKEFVQALILSPTRELAQQTAGEIRKLEG 96
>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 371
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134
G PE ++ + ++G +PT IQ + +P++ S +D I AQTG+GKTL +LL +F +++
Sbjct: 7 GISPE-MINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLFEKLSS 65
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ +QA+++ PTREL +Q+T+ A+ LA
Sbjct: 66 KSPNIQALVLSPTRELAIQITQEAKKLA 93
>gi|242065864|ref|XP_002454221.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor]
gi|241934052|gb|EES07197.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor]
Length = 573
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P ++ ++++ G PT++Q A+P++ D ++ + TGSGKTL YLL I S +
Sbjct: 139 LPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSEIGPLK 198
Query: 133 -------NAQRSAVQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGG 184
+ +RS V+AVIV P+RELGMQ+ + V ++L PSD L V L+ G
Sbjct: 199 RTMEQDNSEKRSGVEAVIVAPSRELGMQIVREVEKILG--PSDKRL------VQQLVGGA 250
Query: 185 MLRRHKSWLK 194
R + LK
Sbjct: 251 NRSRQEEALK 260
>gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
Length = 423
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G +PT +Q A+P + + RD I AQTG+GKTL +LL + + Q + VQA+++ PTR
Sbjct: 21 GISVPTPVQERAVPAMRAGRDVIAQAQTGTGKTLAFLLPVLEKIKPQGAVVQALVIAPTR 80
Query: 149 ELGMQVTKVARVLAA 163
EL +Q+ +VA LAA
Sbjct: 81 ELAIQIARVAEPLAA 95
>gi|402304216|ref|ZP_10823291.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC9]
gi|400375289|gb|EJP28195.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC9]
Length = 423
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G +PT +Q A+P + + RD I AQTG+GKTL +LL + + Q + VQA+++ PTR
Sbjct: 21 GISVPTPVQERAVPAMRAGRDVIAQAQTGTGKTLAFLLPVLEKIKPQGAVVQALVIAPTR 80
Query: 149 ELGMQVTKVARVLAA 163
EL +Q+ +VA LAA
Sbjct: 81 ELAIQIARVAEPLAA 95
>gi|392329791|ref|ZP_10274407.1| ATP-dependent RNA helicase [Streptococcus canis FSL Z3-227]
gi|391419663|gb|EIQ82474.1| ATP-dependent RNA helicase [Streptococcus canis FSL Z3-227]
Length = 447
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 56/87 (64%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H ++ + ++E G+V PT++Q+ +PV+ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKHYIQQALEEIGFVNPTEVQQRLIPVVSSGRDLVGESKTGSGKTHTFLLPIFEKLDED 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
++ VQ VI P+REL Q+ + +A
Sbjct: 67 KAEVQVVITAPSRELATQIFDACKQIA 93
>gi|338811751|ref|ZP_08623956.1| DEAD/DEAH box helicase domain-containing protein [Acetonema longum
DSM 6540]
gi|337276288|gb|EGO64720.1| DEAD/DEAH box helicase domain-containing protein [Acetonema longum
DSM 6540]
Length = 419
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
++G PT +Q +A+PVL + +D + +QTG+GKTL +LL I + S +QA+I+ P
Sbjct: 20 QSGISEPTPVQAQAIPVLMAGKDLVAQSQTGTGKTLAFLLPILEKIKPAESRIQALIMTP 79
Query: 147 TRELGMQVTKVARVLAAK 164
TREL Q+TK A +LA K
Sbjct: 80 TRELASQITKEAGILAEK 97
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 82 LRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA 141
L+ ++E GYV P+ IQ EA+PV+ + +D I AQTG+GKT ++L I ++ + VQA
Sbjct: 16 LKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILEKIDPKNKNVQA 75
Query: 142 VIVVPTRELGMQVTKVARVLAAKPSD 167
+++ PTREL +QV + ++ + D
Sbjct: 76 LVLCPTRELAVQVHEESKKFSRNNRD 101
>gi|291464069|gb|ADE05572.1| increased size exclusion limit 1b [Nicotiana benthamiana]
Length = 548
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 19/130 (14%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN--- 133
+P ++ R+++ G+ +PTD+Q A+P + + D ++ + TGSGKTL Y+L I S V
Sbjct: 115 LPPLLVERLEKEGFTIPTDVQAAAVPTVLKNHDVVIQSYTGSGKTLAYVLPILSQVGPLS 174
Query: 134 ---------AQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGG 184
++ ++AVIV P+RELGMQ+ + L P+D L V L+ G
Sbjct: 175 GEISNGSETGNKAGIEAVIVAPSRELGMQIVRELEKLLG-PADKKL------VQQLVGGA 227
Query: 185 MLRRHKSWLK 194
R + L+
Sbjct: 228 NRSRQEEALR 237
>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ E +V PT++Q +A+P+ RD I+ ++TGSGKTL +L+ IF +N S ++A+++
Sbjct: 19 LKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENLN---SGLEAIVL 75
Query: 145 VPTRELGMQVTKVARVLA 162
VPTREL QV +VAR +
Sbjct: 76 VPTRELAQQVERVARSIG 93
>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ E +V PT++Q +A+P+ RD I+ ++TGSGKTL +L+ IF +N S ++A+++
Sbjct: 19 LKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENLN---SGLEAIVL 75
Query: 145 VPTRELGMQVTKVARVLA 162
VPTREL QV +VAR +
Sbjct: 76 VPTRELAQQVERVARSIG 93
>gi|429758832|ref|ZP_19291345.1| putative cold-shock DEAD-box protein A [Actinomyces sp. oral taxon
181 str. F0379]
gi|429173046|gb|EKY14583.1| putative cold-shock DEAD-box protein A [Actinomyces sp. oral taxon
181 str. F0379]
Length = 662
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 58/94 (61%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P+ +L+ + GY +PT IQ EA+P L D + AQTG+GKT + L + +L+++ +
Sbjct: 18 LPDDLLKAITNMGYEVPTPIQAEAIPALLDFHDVVGIAQTGTGKTAAFGLPLLALIDSDQ 77
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AA+ D D+
Sbjct: 78 RHVQALVLAPTRELAMQSAQAISDFAAQSRDIDV 111
>gi|15615910|ref|NP_244214.1| RNA helicase [Bacillus halodurans C-125]
gi|10175971|dbj|BAB07067.1| RNA helicase [Bacillus halodurans C-125]
Length = 389
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+ + Q + E L + G PT+IQ++ +P ++ I+H+QTG+GKTL YLL +
Sbjct: 1 MNQFQQWPIGEPFLEALTNQGITEPTEIQQQVIPEALDGQNLIVHSQTGTGKTLAYLLPM 60
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRR 188
+ QA+I+ PT+EL MQ+ +VA+ L A S TV+ L+ G ++R
Sbjct: 61 LTKTEELPEQTQALILAPTQELAMQIVEVAKQLTATTS--------ITVLPLIGGANIKR 112
Query: 189 HKSWLK 194
LK
Sbjct: 113 QVEKLK 118
>gi|251783115|ref|YP_002997418.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386317579|ref|YP_006013743.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|408402208|ref|YP_006860172.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410495512|ref|YP_006905358.1| ATP-dependent RNA helicase DBP2 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417753485|ref|ZP_12401604.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|242391745|dbj|BAH82204.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127866|gb|ADX25163.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333769934|gb|EGL47014.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|407968437|dbj|BAM61675.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410440672|emb|CCI63300.1| ATP-dependent RNA helicase DBP2 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 447
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H +++ + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA-KPSDTDL 170
++ VQ V+ P+REL Q+ + +A P D L
Sbjct: 67 KAEVQVVVTAPSRELATQIFDACKQIAKHSPKDIRL 102
>gi|334128555|ref|ZP_08502443.1| ATP-dependent RNA helicase DeaD [Centipeda periodontii DSM 2778]
gi|333387232|gb|EGK58435.1| ATP-dependent RNA helicase DeaD [Centipeda periodontii DSM 2778]
Length = 423
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G + PT +Q +A+P + + RD I AQTG+GKT+ +LL + + + Q +A QA+++
Sbjct: 17 LKKQGIIEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTIAFLLPLLAKIKPQGAAAQALVI 76
Query: 145 VPTRELGMQVTKVARVLAAK 164
PTREL +Q+ +VA L A+
Sbjct: 77 APTRELAIQIARVAEPLGAE 96
>gi|417928473|ref|ZP_12571861.1| type III restriction enzyme, res subunit [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340766347|gb|EGR88873.1| type III restriction enzyme, res subunit [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 457
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H +++ + ++E G+V PT++Q+ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 HFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA-KPSDTDL 170
++ VQ V+ P+REL Q+ + +A P D L
Sbjct: 67 KAEVQVVVTAPSRELATQIFDACKQIAKHSPKDIRL 102
>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 496
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E V+ R+ + PT IQ +A+P + +D I AQTG+GKTL ++L I + +
Sbjct: 9 ISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIENFDFNQ 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL 161
++QA+IV PTREL +Q+T+ R L
Sbjct: 69 QSIQALIVTPTRELALQITEEVRKL 93
>gi|429736828|ref|ZP_19270704.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429153808|gb|EKX96573.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 421
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G PT +Q +A+P + + RD I AQTG+GKTL +LL + + + Q +A QA+++
Sbjct: 17 LKKQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAFLLPLLAKIKPQGAAAQALVI 76
Query: 145 VPTRELGMQVTKVARVLAAK 164
PTREL +Q+ +VA L A+
Sbjct: 77 APTRELAIQIARVAEPLGAE 96
>gi|322388235|ref|ZP_08061839.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
infantis ATCC 700779]
gi|419843512|ref|ZP_14366824.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|321140907|gb|EFX36408.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
infantis ATCC 700779]
gi|385702788|gb|EIG39926.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
Length = 447
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q +++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ + +VQAVI P+REL Q+ + AR +A+
Sbjct: 63 LDEESDSVQAVITAPSRELATQIYQAARQIAS 94
>gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 14/111 (12%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C+ ++ L + E G+ PT IQR+A+PVL S R+C
Sbjct: 114 SGNNVPSPLENFSELSSRYGCESYL----LHNLAELGFKEPTPIQRQAIPVLLSGRECFA 169
Query: 113 HAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A TGSGKTL ++ ++ L +A + ++AVI+ PTREL Q + ++ LA
Sbjct: 170 CAPTGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLA 220
>gi|225439904|ref|XP_002279705.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 57 [Vitis vinifera]
Length = 524
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 14/111 (12%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C+ ++ L + E G+ PT IQR+A+PVL S R+C
Sbjct: 115 SGNNVPSPLENFSELSSRYGCESYL----LHNLAELGFKEPTPIQRQAIPVLLSGRECFA 170
Query: 113 HAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A TGSGKTL ++ ++ L +A + ++AVI+ PTREL Q + ++ LA
Sbjct: 171 CAPTGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLA 221
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +H + + E G PT +Q+E++P+L +D I A TG+GKTL +LL I +N +
Sbjct: 19 VEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK 78
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAA-KPS 166
QA+++ PTREL +Q+T+ A LAA +PS
Sbjct: 79 RHPQALVIAPTRELALQITEEANRLAATEPS 109
>gi|410630675|ref|ZP_11341362.1| cold-shock DEAD box protein A [Glaciecola arctica BSs20135]
gi|410149641|dbj|GAC18229.1| cold-shock DEAD box protein A [Glaciecola arctica BSs20135]
Length = 394
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ E +L+ + E GY PT IQ +A+PV+ S ++ I AQTG+GKT +++L I L+N
Sbjct: 7 QLSEPILKALTELGYTQPTPIQEKAIPVIMSGKNLIAAAQTGTGKTASFVLPILQLLNTD 66
Query: 136 R----SAVQAVIVVPTRELGMQVTK 156
R V+A+I+VPTREL +QV K
Sbjct: 67 RKLRGKRVRALILVPTRELAVQVEK 91
>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase [Arcobacter nitrofigilis DSM 7299]
gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
7299]
Length = 488
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T ++ + E++ R +++ G+ P+ IQ++A+PV+ S +D + AQTG+GKT + L
Sbjct: 1 MTFKDF---NFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGL 57
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
+ +++N S V+AV++VPTREL MQV+
Sbjct: 58 PMINMMNGN-SGVEAVVIVPTRELAMQVS 85
>gi|373858358|ref|ZP_09601095.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372451825|gb|EHP25299.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 560
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E ++ ++ E+G V PT IQ +A+P + D I AQTG+GKT ++L I ++ +
Sbjct: 9 ISEMLVEKLQESGVVTPTPIQEQAIPYVMKGNDIIAQAQTGTGKTFAFILPILEHLDPEA 68
Query: 137 SAVQAVIVVPTRELGMQVT 155
S VQA+IV PTREL +Q+T
Sbjct: 69 SHVQALIVTPTRELALQIT 87
>gi|326517806|dbj|BAK03821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 24/170 (14%)
Query: 38 SISWKPLRAVLSSSAVSIEELAAGTG-NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDI 96
S+ KP ++ L S V ++L ++ + EL +P ++ R+++ G PT++
Sbjct: 128 SLHLKPAKSALPKSPVVKKKLKIDEALFSASSFEELG---LPPLLIDRLNKEGLTSPTEV 184
Query: 97 QREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV-----------NAQRSAVQAVIVV 145
Q ++PV+ D ++ + TGSGKTL YLL I S + + +RS ++AV+V
Sbjct: 185 QSASIPVISQRHDAVIQSYTGSGKTLAYLLPILSEIGPLKRAREQGNSEKRSGIEAVVVA 244
Query: 146 PTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
P+RELGMQ+ + V ++L P D L V L+ G R + LK
Sbjct: 245 PSRELGMQIVREVEKILG--PDDKRL------VQQLVGGANRSRQEEALK 286
>gi|374603780|ref|ZP_09676754.1| ATP-dependent RNA helicase [Paenibacillus dendritiformis C454]
gi|374390505|gb|EHQ61853.1| ATP-dependent RNA helicase [Paenibacillus dendritiformis C454]
Length = 515
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 84 RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVI 143
R+ + G PT IQ +A+P + RD +L AQTG+GKTL +LL I ++ + QA+I
Sbjct: 10 RLTKQGITAPTPIQMQAIPAALAGRDAVLQAQTGTGKTLAFLLPILQRIDPGQPHAQALI 69
Query: 144 VVPTRELGMQVTKVARVL 161
V PTREL +Q+T A+ L
Sbjct: 70 VAPTRELALQITAEAKKL 87
>gi|358464584|ref|ZP_09174546.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
sp. oral taxon 058 str. F0407]
gi|357066688|gb|EHI76826.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
sp. oral taxon 058 str. F0407]
Length = 454
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 18 YIEKALEELNFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 77
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 78 QAVITAPSRELATQIYQAARQIAA 101
>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
Length = 398
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAV 142
R +++ G PT IQ E +P++ RD I A+TGSGKTL ++L + V+ ++ AVQ +
Sbjct: 15 RALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPMLEKVDLEKIAVQGL 74
Query: 143 IVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
IV PTREL +QVT + L +LE V+A+ G
Sbjct: 75 IVAPTRELAIQVTDELKKLV------ELEFPEVNVLAVYGG 109
>gi|401564090|ref|ZP_10805009.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC6]
gi|400189185|gb|EJO23295.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC6]
Length = 424
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G + PT +Q +A+P + + RD I AQTG+GKTL +LL I + + Q +A QA+++
Sbjct: 17 LKKQGIMEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAFLLPILAKIKPQGTAAQALVI 76
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL +Q+ +VA L
Sbjct: 77 APTRELAIQIERVAEPLG 94
>gi|353235877|emb|CCA67883.1| related to MAK5-ATP-dependent RNA helicase [Piriformospora indica
DSM 11827]
Length = 703
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV-------- 132
+LRR+ + G++ PT IQRE LP+ S RD I AQTGSGKTL + L I +
Sbjct: 136 LLRRIKDQGFIKPTPIQRETLPLSTSGRDVIGIAQTGSGKTLAFALPILRHILSTNRLKS 195
Query: 133 -NAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE-HKPCTV-MALLDGGMLRRH 189
Q+ ++A+IV PTREL +QV+ A + S ++E H P V +A + GGM ++
Sbjct: 196 LRRQKRNLKALIVAPTRELALQVSAHINACAPQRSKEEIEAHLPPLVSVATIVGGMSQQK 255
Query: 190 KSWL 193
++ +
Sbjct: 256 QTRM 259
>gi|291464067|gb|ADE05571.1| increased size exclusion limit 1a [Nicotiana benthamiana]
Length = 551
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 21/130 (16%)
Query: 78 PEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN---- 133
P ++ R++E G+ +PTD+Q A+P + + D ++ + TGSGKTL Y+L I S
Sbjct: 116 PPLLVERLEEEGFTVPTDVQAAAVPTVLKNHDVVIQSYTGSGKTLAYVLPILSQAGPLSG 175
Query: 134 --------AQRSAVQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGG 184
+ ++AVIV P+RELGMQ+ + V ++L P+D L V L+ G
Sbjct: 176 EISNGCETGNKVGIEAVIVAPSRELGMQIVREVEKLLG--PADKKL------VQQLVGGA 227
Query: 185 MLRRHKSWLK 194
R + L+
Sbjct: 228 NRSRQEEALR 237
>gi|406862020|gb|EKD15072.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 536
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%)
Query: 38 SISWKPLRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQ 97
S WK + + + + E+ A T L + ++ +L + E G+ P+ IQ
Sbjct: 19 SEDWK--KGLTVPTKDTREQTADVTATKGLDFEDF---NLDRKLLMGIFEAGFEKPSPIQ 73
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157
EA+P+ + RD + A+ G+GKT +++ V+A+ + VQA+I+VPTREL MQ ++V
Sbjct: 74 EEAIPIALAGRDILARAKNGTGKTAAFIIPALQKVSAKNNKVQALILVPTRELAMQTSQV 133
Query: 158 ARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
+ L +H VM G MLR
Sbjct: 134 CKTLG--------KHLGINVMVTTGGTMLR 155
>gi|406588160|ref|ZP_11062850.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein, partial
[Streptococcus sp. GMD1S]
gi|404469487|gb|EKA14290.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein, partial
[Streptococcus sp. GMD1S]
Length = 106
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|392957192|ref|ZP_10322716.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
gi|391876599|gb|EIT85195.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
Length = 431
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ PTDIQ +P + + D I +QTGSGKT+ +LL I + ++A ++ +QAVI P
Sbjct: 22 EQGFKKPTDIQERVVPGILNGYDIIGQSQTGSGKTMAFLLPILNKIDATKNEIQAVITAP 81
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
TREL Q+ + LAA E P T ++ G +R LK
Sbjct: 82 TRELAQQIFQEYEKLAAYFP----EEAPITAKTVVGGTDRKRMADRLK 125
>gi|322374632|ref|ZP_08049146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C300]
gi|321280132|gb|EFX57171.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C300]
Length = 447
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 410
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ E ++++ + G PT IQ +A+P L + RD I AQTG+GKTL +LL I ++ +
Sbjct: 8 HIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLPILEQIDLE 67
Query: 136 RSAVQAVIVVPTRELGMQV 154
VQA+IV PTREL Q+
Sbjct: 68 SKTVQALIVAPTRELARQI 86
>gi|331266730|ref|YP_004326360.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus oralis Uo5]
gi|419814427|ref|ZP_14339215.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus sp. GMD2S]
gi|326683402|emb|CBZ01020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus oralis Uo5]
gi|404471822|gb|EKA16293.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus sp. GMD2S]
Length = 447
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|419778853|ref|ZP_14304734.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383186617|gb|EIC79082.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 447
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|315612843|ref|ZP_07887754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314953|gb|EFU62994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 447
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|326693663|ref|ZP_08230668.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc argentinum KCTC 3773]
Length = 454
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
T + Q ++ ++ + + G+ PT +Q + +P + +D + +QTGSGKT T+L+
Sbjct: 4 TANQFGQFNLKPEIIIALTKIGFTKPTPVQAKLIPAILQGKDVVGQSQTGSGKTHTFLIP 63
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
IF+ + R VQAVI P+REL Q+TK A+ A++
Sbjct: 64 IFNQLEQDRQYVQAVITTPSRELAAQITKAAKDFASQ 100
>gi|169343937|ref|ZP_02864931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens C str. JGS1495]
gi|169297939|gb|EDS80031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens C str. JGS1495]
Length = 405
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + S ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 11 EEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 71 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 120
>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 722
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + + G+ +PT IQ A+P L RD + AQTG+GKT + L + ++V+A
Sbjct: 52 LPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 111
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AA+ + D+
Sbjct: 112 RNVQALVLAPTRELAMQSAQAIEDFAARTARLDV 145
>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
17982]
gi|153798516|gb|EDN80936.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 722
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + + G+ +PT IQ A+P L RD + AQTG+GKT + L + ++V+A
Sbjct: 52 LPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 111
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AA+ + D+
Sbjct: 112 RNVQALVLAPTRELAMQSAQAIEDFAARTARLDV 145
>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
43531]
gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
43531]
Length = 426
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G PT +Q +A+P + + RD I AQTG+GKTL YLL + + + Q +A QA+++
Sbjct: 17 LQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLARIKPQGAAAQALVI 76
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL +Q+ VA LA
Sbjct: 77 APTRELAIQIEHVAASLA 94
>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like protein [Chlorobium chlorochromatii
CaD3]
gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
Length = 640
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+PE +++ ++E GY PT IQ + +P L + RD + AQTG+GKT + L I + ++ Q
Sbjct: 16 QLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILASIDIQ 75
Query: 136 RSAVQAVIVVPTRELGMQVTK 156
++ QA+++ PTREL +QV +
Sbjct: 76 QAEPQALVLAPTRELAIQVAE 96
>gi|406576981|ref|ZP_11052602.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus sp. GMD6S]
gi|419817357|ref|ZP_14341521.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus sp. GMD4S]
gi|404460445|gb|EKA06708.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus sp. GMD6S]
gi|404466081|gb|EKA11440.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus sp. GMD4S]
Length = 447
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|227513124|ref|ZP_03943173.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227083699|gb|EEI19011.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
Length = 453
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + H+ +L +D+ + PT +Q + +PV+ RD + + TGSGKT +LL IF+
Sbjct: 3 QFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFN 62
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHK 190
++ + VQAVI P+REL Q+ A+ LA D P ++ + + G +R +
Sbjct: 63 DIDPKIDEVQAVITTPSRELAYQILDAAKQLAKFSPD------PISIGSYVGGTDKKRQE 116
Query: 191 SWLK 194
LK
Sbjct: 117 DKLK 120
>gi|357136707|ref|XP_003569945.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47A-like
[Brachypodium distachyon]
Length = 575
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 38 SISWKPLRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQ 97
S+S KP ++ L V ++L + + + +P ++ R+++ G PT++Q
Sbjct: 102 SLSLKPAKSALPKVPVVRKKLKIDEA--LFSAKSFEEHDLPPLLIDRLNKEGLTSPTEVQ 159
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA-----------QRSAVQAVIVVP 146
A+P + D ++ + TGSGKTL Y+L I S + +RS ++AVIV P
Sbjct: 160 SAAIPTISQKHDVVIQSYTGSGKTLAYILPILSEIGPLKRAREQGNSDKRSGIEAVIVAP 219
Query: 147 TRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+RELGMQ+ + V ++L P D L V L+ G R + LK
Sbjct: 220 SRELGMQIVREVEKILG--PDDKRL------VQQLVGGANRSRQEEALK 260
>gi|356525722|ref|XP_003531472.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47A-like [Glycine
max]
Length = 562
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 16/96 (16%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P ++ R+++ G+ +PT++Q A+P + ++RD I+ + TGSGKTL YLL I S+V R
Sbjct: 120 LPLVLIERLEKEGFTVPTEVQSAAVPTILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLR 179
Query: 137 S----------------AVQAVIVVPTRELGMQVTK 156
++AVIV P+RELGMQ+ +
Sbjct: 180 GEIGEGDSDGGECGKKLGIEAVIVAPSRELGMQIVR 215
>gi|419783276|ref|ZP_14309067.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182430|gb|EIC74985.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 447
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|357239500|ref|ZP_09126835.1| DEAD/DEAH box helicase [Streptococcus ictaluri 707-05]
gi|356752069|gb|EHI69199.1| DEAD/DEAH box helicase [Streptococcus ictaluri 707-05]
Length = 447
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ +DE G+ PT++Q+ +PV+ S RD + ++TGSGKT T+LL IF ++ + V
Sbjct: 11 YIQEALDEIGFKEPTEVQKRLIPVVGSGRDLVGESKTGSGKTHTFLLPIFEKLDEDKEDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA-KPSDTDL 170
Q VI P+REL Q+ + ++ +A P D L
Sbjct: 71 QVVITAPSRELATQIFEASKQIAKHSPKDIRL 102
>gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 453
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + H+ +L +D+ + PT +Q + +PV+ RD + + TGSGKT +LL IF+
Sbjct: 3 QFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFN 62
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHK 190
++ + VQAVI P+REL Q+ A+ LA D P ++ + + G +R +
Sbjct: 63 DIDPKIDEVQAVITTPSRELAYQILDAAKQLAKFSPD------PISIGSYVGGTDKKRQE 116
Query: 191 SWLK 194
LK
Sbjct: 117 DKLK 120
>gi|417940242|ref|ZP_12583530.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
gi|343389123|gb|EGV01708.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
Length = 471
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIEKALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|399527779|ref|ZP_10767466.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361715|gb|EJN45457.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 719
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + + G+ +PT IQ A+P L RD + AQTG+GKT + L + ++V+A
Sbjct: 49 LPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 108
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AA+ + D+
Sbjct: 109 RDVQALVLAPTRELAMQSAQAIEDFAARTARLDV 142
>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 578
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
+ G +PE + + G PT +Q++A+PVL S +D I AQTG+GKT+ + L I
Sbjct: 6 ISMGIIPE-LTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQR 64
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ + VQA+I+ PTREL +Q+T + LAA
Sbjct: 65 IDIDKEQVQALILTPTRELAIQITSELKKLAA 96
>gi|417916358|ref|ZP_12559941.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus mitis bv. 2
str. SK95]
gi|342830018|gb|EGU64358.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus mitis bv. 2
str. SK95]
Length = 447
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIEKALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 549
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E+VL + D T PT +Q +A+P L + RD + AQTG+GKTL ++L I VN ++
Sbjct: 15 ENVLNKSDIT---EPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEKPT 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
+QA+I+ PTREL +Q+T + LA
Sbjct: 72 IQALIITPTRELAIQITAETKKLA 95
>gi|402834784|ref|ZP_10883376.1| DEAD/DEAH box helicase [Selenomonas sp. CM52]
gi|402276974|gb|EJU26068.1| DEAD/DEAH box helicase [Selenomonas sp. CM52]
Length = 446
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H PE ++ + G T +Q +A+P + S RD I+ AQTG+GKTL +LL + +
Sbjct: 7 HCPEVLVDALARQGIREATPVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGN 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
QA++V PTREL MQ +VA+ LA
Sbjct: 67 AQVAQALVVSPTRELAMQTARVAKTLA 93
>gi|423419525|ref|ZP_17396614.1| hypothetical protein IE3_02997 [Bacillus cereus BAG3X2-1]
gi|401106131|gb|EJQ14098.1| hypothetical protein IE3_02997 [Bacillus cereus BAG3X2-1]
Length = 450
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I +N + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKINPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|401684668|ref|ZP_10816544.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400184938|gb|EJO19174.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 447
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIEKALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991428|gb|EEC57434.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 559
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 16/131 (12%)
Query: 33 AFLPVSISWKPLRAVLSSSAVSIEELAAGTGNN-SLTLRELCQGHVPEHVLRRMDETGYV 91
A L VSI++ P E + AG GN +L EL +V E +L+ + + G+
Sbjct: 3 AQLCVSINYCP------------ERICAGRGNEENLKFEEL---NVDEKILKAIGDMGFE 47
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+ IQ +A+PV+ +D + AQTG+GKT Y + + ++ + VQAV++ PTREL
Sbjct: 48 EASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPMLQSIDPKLKCVQAVVLCPTRELA 107
Query: 152 MQVTKVARVLA 162
+QV R LA
Sbjct: 108 IQVADEIRKLA 118
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAE 89
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAE 89
>gi|423559882|ref|ZP_17536184.1| hypothetical protein II3_05086 [Bacillus cereus MC67]
gi|401187066|gb|EJQ94141.1| hypothetical protein II3_05086 [Bacillus cereus MC67]
Length = 450
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I +N + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKINPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|418976799|ref|ZP_13524649.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
gi|383350909|gb|EID28751.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
Length = 447
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + +PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTIPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|307706950|ref|ZP_07643749.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617664|gb|EFN96832.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 447
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E ++ PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFITPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|227524339|ref|ZP_03954388.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
gi|227088570|gb|EEI23882.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
Length = 453
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + H+ +L +D+ + PT +Q + +PV+ RD + + TGSGKT +LL IF+
Sbjct: 3 QFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPIFN 62
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHK 190
++ + VQAVI P+REL Q+ A+ LA D P ++ + + G +R +
Sbjct: 63 DIDRKIDEVQAVITTPSRELAYQILDAAKQLAKFSPD------PISIGSYVGGTDKKRQE 116
Query: 191 SWLK 194
LK
Sbjct: 117 DKLK 120
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAE 89
>gi|77408189|ref|ZP_00784934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|77173204|gb|EAO76328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
Length = 447
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ V
Sbjct: 11 YIQRALDELKFVAPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+REL Q+ + + +A
Sbjct: 71 QVVITAPSRELATQIYQATKQIA 93
>gi|418967512|ref|ZP_13519175.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383344125|gb|EID22295.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 447
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ S RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 423
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G +PT +Q A+P + RD I AQTG+GKTL +LL + + Q + VQA+++ PTR
Sbjct: 21 GISVPTPVQERAVPAMRVGRDVIAQAQTGTGKTLAFLLPVLEKIKPQGAVVQALVIAPTR 80
Query: 149 ELGMQVTKVARVLAA 163
EL +Q+ +VA LAA
Sbjct: 81 ELAIQIARVAEPLAA 95
>gi|419781144|ref|ZP_14306976.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184536|gb|EIC77050.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 447
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQVAA 94
>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
Length = 521
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAE 89
>gi|157736313|ref|YP_001488996.1| DEAD/DEAH box helicase [Arcobacter butzleri RM4018]
gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
RM4018]
Length = 516
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
N +EL Q + +DE G+ P+ IQ +A+P + RD + A TG+GKT +
Sbjct: 4 NDFNFKELLQ--------KAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAF 55
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
L I + + A +S V+AV++VPTREL MQV+
Sbjct: 56 GLPILNKIKA-KSGVEAVVIVPTRELAMQVS 85
>gi|392989610|ref|YP_006488203.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392337030|gb|AFM71312.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 500
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
Q H ++ + E G+ PT++Q +P++ ++ I +QTGSGKT T+LL +F +N
Sbjct: 6 QFHFKPYINEALAEKGFAQPTEVQERLIPLIAKGKNIIGQSQTGSGKTHTFLLPLFQKIN 65
Query: 134 AQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWL 193
A+++ VQ VI P+REL Q+ A + AK SD ++ V + G +R S L
Sbjct: 66 AEKAEVQVVITAPSRELATQIYDAASQI-AKFSDPEIR-----VTNFVGGTDKQRQLSRL 119
Query: 194 K 194
K
Sbjct: 120 K 120
>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
Length = 516
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
N +EL Q + +DE G+ P+ IQ +A+P + RD + A TG+GKT +
Sbjct: 4 NDFNFKELLQ--------KAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAF 55
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
L I + + A +S V+AV++VPTREL MQV+
Sbjct: 56 GLPILNKIKA-KSGVEAVVIVPTRELAMQVS 85
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAE 89
>gi|326202886|ref|ZP_08192753.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325986963|gb|EGD47792.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 439
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PTDIQ++A+P +RD ILH+ TG+GKTL YLL +F ++ + +QA+I+VPT EL
Sbjct: 25 VPTDIQQKAIPEELKNRDVILHSSTGTGKTLAYLLPLFMKLSVDKKEMQALILVPTHELA 84
Query: 152 MQVTKVARVLA 162
+QV + +L+
Sbjct: 85 IQVERQIELLS 95
>gi|396583986|ref|ZP_10484488.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395548411|gb|EJG15674.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 734
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + + G+ +PT IQ A+P L RD + AQTG+GKT + L + ++V+A
Sbjct: 59 LPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 118
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AA+ + D+
Sbjct: 119 RDVQALVLAPTRELAMQSAQAIEDFAARTARLDV 152
>gi|379723868|ref|YP_005315999.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378572540|gb|AFC32850.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 510
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ H ++R++E P+ IQ +A+PV + +D + +QTG+GKTL Y L + ++
Sbjct: 12 HINPHFVQRLEELEITEPSPIQADAIPVALTGKDLVAQSQTGTGKTLAYALPVLQKLDEN 71
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVL 161
VQA+++VPTRELGMQ+ + L
Sbjct: 72 LREVQALVLVPTRELGMQIVQTVEEL 97
>gi|384154754|ref|YP_005537569.1| DEAD/DEAH box helicase [Arcobacter butzleri ED-1]
gi|345468308|dbj|BAK69759.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri ED-1]
Length = 516
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
N +EL Q + +DE G+ P+ IQ +A+P + RD + A TG+GKT +
Sbjct: 4 NDFNFKELLQ--------KAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAF 55
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
L I + + A +S V+AV++VPTREL MQV+
Sbjct: 56 GLPILNKIKA-KSGVEAVVIVPTRELAMQVS 85
>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
Length = 454
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I +N + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKINPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|429760884|ref|ZP_19293342.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
gi|429176588|gb|EKY17963.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
Length = 523
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGSNRHVQVVILSPTRELAIQVAE 89
>gi|443325427|ref|ZP_21054123.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
gi|442794981|gb|ELS04372.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
Length = 494
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
++T R+L + + +++ G+V PTDIQR+A+P L RD +QTG+GKT +
Sbjct: 2 TVTFRDLG---LSDACAEQLESIGFVEPTDIQRQAIPALLEGRDIFGQSQTGTGKTAAFA 58
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L L+++ +VQA+I+ PTREL QV
Sbjct: 59 LPTLELIDSDDKSVQALILTPTRELAQQV 87
>gi|399047526|ref|ZP_10739540.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398054666|gb|EJL46780.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 540
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147
G PT IQ +A+PVL + +D I AQTG+GKTL +LL I V+ + + VQA+I+ PT
Sbjct: 25 NGIAEPTPIQEKAIPVLMTGKDAISQAQTGTGKTLAFLLPILEKVDPETNDVQALILTPT 84
Query: 148 RELGMQVTKVARVLAA 163
REL +Q+T + L A
Sbjct: 85 RELALQITAEVQKLTA 100
>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
Length = 523
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGSNRHVQVVILSPTRELAIQVAE 89
>gi|218897409|ref|YP_002445820.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402560355|ref|YP_006603079.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-771]
gi|423360566|ref|ZP_17338069.1| hypothetical protein IC1_02546 [Bacillus cereus VD022]
gi|434375382|ref|YP_006610026.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9842]
gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
gi|401081562|gb|EJP89836.1| hypothetical protein IC1_02546 [Bacillus cereus VD022]
gi|401789007|gb|AFQ15046.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-771]
gi|401873939|gb|AFQ26106.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 450
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I +N + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKINPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|401679335|ref|ZP_10811267.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219664|gb|EJO50527.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 523
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGSNRHVQVVILSPTRELAIQVAE 89
>gi|376259497|ref|YP_005146217.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373943491|gb|AEY64412.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 437
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PTDIQ++A+P +RD ILH+ TG+GKTL YLL +F ++ + +QA+I+VPT EL
Sbjct: 25 VPTDIQQKAIPEELKNRDVILHSSTGTGKTLAYLLPLFMKLSVDKKEMQALILVPTHELA 84
Query: 152 MQVTKVARVLA 162
+QV + +L+
Sbjct: 85 IQVERQIELLS 95
>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
Length = 523
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L + Q + E VLR +++ G+ PT IQ+EA+PV S +D I AQTG+GKT + L +
Sbjct: 2 LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQVTK 156
V+ VQ VI+ PTREL +QV +
Sbjct: 62 LERVDGSNRHVQVVILSPTRELAIQVAE 89
>gi|419512156|ref|ZP_14051790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|421297366|ref|ZP_15748069.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA58581]
gi|379636626|gb|EIA01184.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|395892940|gb|EJH03930.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA58581]
Length = 432
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
M E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +VQAVI
Sbjct: 1 MKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSVQAVIT 60
Query: 145 VPTRELGMQVTKVARVLAA 163
P+REL Q+ +VAR ++A
Sbjct: 61 APSRELATQIYQVARQISA 79
>gi|417935307|ref|ZP_12578626.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
gi|340769800|gb|EGR92318.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
Length = 447
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIEKALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
Length = 767
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + E G+ PT IQ A+P+L RD + AQTG+GKT + L + + ++ ++
Sbjct: 134 LPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAHIDPEK 193
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AAK D+
Sbjct: 194 REVQALVLAPTRELAMQGAQAIESFAAKSRGVDV 227
>gi|399887481|ref|ZP_10773358.1| ATP-dependent RNA helicase [Clostridium arbusti SL206]
Length = 369
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
++ +EL + E ++ + +TG PT IQ+E++ + +D I AQTG+GKTL +LL
Sbjct: 1 MSFKEL---GISEDIINILKKTGITEPTAIQKESISFIKKGKDVIAEAQTGTGKTLAFLL 57
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
IF ++ ++QA+IV PTREL +Q+T+ A
Sbjct: 58 PIFENISPDAPSIQALIVTPTRELAIQITEEA 89
>gi|385260529|ref|ZP_10038674.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385191199|gb|EIF38619.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 447
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ + +
Sbjct: 10 KYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEESDS 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
VQAVI P+REL Q+ + AR +A S +D+E
Sbjct: 70 VQAVITAPSRELATQIYQAARQIA---SHSDVE 99
>gi|423407759|ref|ZP_17384908.1| hypothetical protein ICY_02444 [Bacillus cereus BAG2X1-3]
gi|401659085|gb|EJS76574.1| hypothetical protein ICY_02444 [Bacillus cereus BAG2X1-3]
Length = 454
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
EL + H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I
Sbjct: 9 ELGISEIFNHTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVT 155
++++ S VQA+IV PTREL +Q+T
Sbjct: 66 KIDSESSDVQALIVAPTRELALQIT 90
>gi|18310498|ref|NP_562432.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
gi|18145178|dbj|BAB81222.1| probable RNA helicase [Clostridium perfringens str. 13]
Length = 407
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + S ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 13 EEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 72
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 73 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQIEKLK 122
>gi|410593966|ref|YP_006950693.1| DEAD/DEAH box helicase [Streptococcus agalactiae SA20-06]
gi|421532704|ref|ZP_15979055.1| DEAD/DEAH box helicase [Streptococcus agalactiae STIR-CD-17]
gi|403642050|gb|EJZ02938.1| DEAD/DEAH box helicase [Streptococcus agalactiae STIR-CD-17]
gi|410517605|gb|AFV71749.1| DEAD-box ATP-dependent RNA helicase [Streptococcus agalactiae
SA20-06]
Length = 447
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ V
Sbjct: 11 YIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+REL Q+ + + +A
Sbjct: 71 QVVITAPSRELATQIYQATKQIA 93
>gi|418975107|ref|ZP_13523016.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348478|gb|EID26437.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 447
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIEKALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|77414795|ref|ZP_00790917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77159157|gb|EAO70346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 304
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ + V
Sbjct: 11 YIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSNDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+REL Q+ + + +A
Sbjct: 71 QVVITAPSRELATQIYQATKQIA 93
>gi|386726622|ref|YP_006192948.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384093747|gb|AFH65183.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 479
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ H ++R++E P+ IQ +A+PV + +D + +QTG+GKTL Y L + ++
Sbjct: 12 HINPHFVQRLEELEITEPSPIQADAIPVALTGKDLVAQSQTGTGKTLAYALPVLQKLDEN 71
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVL 161
VQA+++VPTRELGMQ+ + L
Sbjct: 72 LREVQALVLVPTRELGMQIVQTVEEL 97
>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
15579]
gi|187773253|gb|EDU37055.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
Length = 421
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ + +P+ ++D I ++TG+GKTL YLL IF +N ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQEKTIPLAMENKDIIGQSETGTGKTLAYLLPIFKKINTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + +++ S+ D++ MA++ ++R LK
Sbjct: 85 MQINNEIKNISSN-SNMDVKS-----MAIIGEANIKRQIEKLK 121
>gi|225426815|ref|XP_002276531.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial
[Vitis vinifera]
gi|147852111|emb|CAN82264.1| hypothetical protein VITISV_009282 [Vitis vinifera]
Length = 557
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 22/132 (16%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P ++ R++ G+ +PTD+Q A+P + + D ++ + TGSGKTL YLL I S V
Sbjct: 115 LPPLLIDRLEREGFSVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYLLPILSEVGPLK 174
Query: 133 ----NAQRSA-----VQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLD 182
NA ++ ++AVI+ P+RELGMQ+ + V ++L P+D L V L+
Sbjct: 175 NKPPNADNTSRNKMEIEAVILAPSRELGMQIVREVEKLLG--PADKKL------VQQLVG 226
Query: 183 GGMLRRHKSWLK 194
G R + LK
Sbjct: 227 GANRTRQEEALK 238
>gi|421147068|ref|ZP_15606762.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|401686273|gb|EJS82259.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 447
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ V
Sbjct: 11 YIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+REL Q+ + + +A
Sbjct: 71 QVVITAPSRELATQIYQATKQIA 93
>gi|428219550|ref|YP_007104015.1| DEAD/DEAH box helicase [Pseudanabaena sp. PCC 7367]
gi|427991332|gb|AFY71587.1| DEAD/DEAH box helicase domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
HVL +E G+ PT IQ +A+P L + D + AQTG+GKT + L + ++ Q +
Sbjct: 15 HVL---EELGFTEPTQIQAQAIPPLLNGNDVLGQAQTGTGKTAAFSLPLLESIDIQSKTL 71
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPS 166
QA+++ PTREL +QVT+ R KPS
Sbjct: 72 QALVLAPTRELALQVTQAMRSFNQKPS 98
>gi|421487883|ref|ZP_15935281.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369845|gb|EJP22842.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 447
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIAEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|424834348|ref|ZP_18259059.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978694|gb|EHN14763.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 421
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ + +P+ ++D I ++TG+GKTL YLL IF +N ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQEKTIPLAMENKDIIGQSETGTGKTLAYLLPIFKKINTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + +++ S+ D++ MA++ ++R LK
Sbjct: 85 MQINNEIKNISSN-SNMDVKS-----MAIIGEANIKRQIEKLK 121
>gi|340360111|ref|ZP_08682582.1| superfamily II helicase [Actinomyces sp. oral taxon 448 str. F0400]
gi|339883878|gb|EGQ73710.1| superfamily II helicase [Actinomyces sp. oral taxon 448 str. F0400]
Length = 822
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L+ + + GY PT IQREA+PVL + +D + AQTG+GKT + L + + V A
Sbjct: 154 LPADLLKAVTDMGYETPTAIQREAIPVLLAGQDVVGVAQTGTGKTAAFGLPLLNAVEADE 213
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL +Q +A + D+
Sbjct: 214 HDVQALVLAPTRELALQSADAVTDMAHRSRGLDV 247
>gi|374287228|ref|YP_005034313.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
Length = 591
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSR-DCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+PE +LR +++ GY PTDIQ +A+P+L D + AQTG+GKT + L + + ++++
Sbjct: 8 LPESLLRALEDKGYKSPTDIQEKAIPLLLEKDTDFVGQAQTGTGKTAAFSLPLLAKIDSK 67
Query: 136 RSAVQAVIVVPTRELGMQVTK 156
VQA+++ PTREL Q+T+
Sbjct: 68 SGDVQAIVLSPTRELANQITE 88
>gi|434399810|ref|YP_007133814.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
gi|428270907|gb|AFZ36848.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
Length = 485
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
SL L + C +++++E G+V PT IQ++A+P L RD + +QTG+GKT +
Sbjct: 6 KSLGLSDTC--------VQQLEELGFVEPTQIQQQAIPSLLEGRDLVGQSQTGTGKTAAF 57
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + L++++ AVQ +I+ PTREL QV + A+
Sbjct: 58 SLPMLDLIDSRNKAVQGLILTPTRELAQQVGQAINDFAS 96
>gi|414158175|ref|ZP_11414469.1| hypothetical protein HMPREF9188_00743 [Streptococcus sp. F0441]
gi|417793911|ref|ZP_12441177.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus oralis
SK255]
gi|334271631|gb|EGL90016.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus oralis
SK255]
gi|410870720|gb|EKS18677.1| hypothetical protein HMPREF9188_00743 [Streptococcus sp. F0441]
Length = 447
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIAEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|153939716|ref|YP_001391033.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384462072|ref|YP_005674667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 421
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ EA+P+ ++D I ++TG+GKTL YLL IF + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + ++ S+++++ K MA++ ++R LK
Sbjct: 85 MQINNEIKNIS---SNSNMDVKS---MAIIGEANIKRQIEKLK 121
>gi|385261982|ref|ZP_10040097.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385191723|gb|EIF39135.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 447
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 54/79 (68%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
++E ++ PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +VQAVI
Sbjct: 16 LEELKFITPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDESSDSVQAVIT 75
Query: 145 VPTRELGMQVTKVARVLAA 163
P+REL Q+ + AR +A+
Sbjct: 76 APSRELATQIYQAARQIAS 94
>gi|306825593|ref|ZP_07458932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304431954|gb|EFM34931.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 447
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIAEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153933390|ref|YP_001384035.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153934793|ref|YP_001387577.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
ATCC 3502]
gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 421
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ EA+P+ ++D I ++TG+GKTL YLL IF + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + ++ S+++++ K MA++ ++R LK
Sbjct: 85 MQINNEIKNIS---SNSNMDVKS---MAIIGEANIKRQIEKLK 121
>gi|395760255|ref|ZP_10440924.1| cold-shock DeaD box ATP-dependent RNA helicase (partial match)
[Janthinobacterium lividum PAMC 25724]
Length = 716
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 59/88 (67%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ E ++R + + GY P+ IQ +P+L ++RD + AQTG+GKT + L I S ++ +
Sbjct: 13 NLSEPLIRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAAFALPILSRIDLK 72
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
+S+ QA+++ PTREL +QV + +V AA
Sbjct: 73 QSSPQALVLAPTRELAIQVAEAFQVYAA 100
>gi|337750837|ref|YP_004644999.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336302026|gb|AEI45129.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 433
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ H ++R++E P+ IQ +A+PV + +D + +QTG+GKTL Y L + ++
Sbjct: 11 HINPHFVQRLEELEITEPSPIQADAIPVALTGKDLVAQSQTGTGKTLAYALPVLQKLDEN 70
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVL 161
VQA+++VPTRELGMQ+ + L
Sbjct: 71 LREVQALVLVPTRELGMQIVQTVEEL 96
>gi|345021499|ref|ZP_08785112.1| DEAD/DEAH box helicase domain-containing protein [Ornithinibacillus
scapharcae TW25]
Length = 433
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR + G + PT IQ +P + +D I AQTG+GKTL ++L I ++ Q+S V
Sbjct: 15 HTLRSL---GIITPTSIQERTIPSVLEGKDVIAKAQTGTGKTLAFVLPILEKIDVQKSDV 71
Query: 140 QAVIVVPTRELGMQVTK 156
QA+I+ PTREL +Q++K
Sbjct: 72 QALILTPTRELALQISK 88
>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
Length = 668
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 65 NSLTLRELC--QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTL 122
N + LC +G+ PE++++ + + G+ PT IQ + PV+ S RD + AQTGSGKTL
Sbjct: 69 NDVPSPNLCFDEGNFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTL 128
Query: 123 TYLLLIFSLVNAQRSAVQ-----AVIVVPTRELGMQVTKVA 158
Y+L +N Q+ + A+I+ PTREL Q+ KVA
Sbjct: 129 AYMLPAVVHINNQQRPQRGEGPVALILAPTRELAQQIQKVA 169
>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
[Tribolium castaneum]
Length = 1142
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 65 NSLTLRELC--QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTL 122
N + LC +G+ PE++++ + + G+ PT IQ + PV+ S RD + AQTGSGKTL
Sbjct: 543 NDVPSPNLCFDEGNFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTL 602
Query: 123 TYLLLIFSLVNAQRSAVQ-----AVIVVPTRELGMQVTKVA 158
Y+L +N Q+ + A+I+ PTREL Q+ KVA
Sbjct: 603 AYMLPAVVHINNQQRPQRGEGPVALILAPTRELAQQIQKVA 643
>gi|223590136|sp|A5DF03.2|PRP28_PICGU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|190345810|gb|EDK37756.2| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
6260]
Length = 575
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 30 TNRAFLPVSISW--KPLRAVLSSSAVSIEELAAGT--GNN-SLTLRELCQGHVPEHVLRR 84
+N FLP W K L + S +E + T GNN LR + +P +L
Sbjct: 105 SNNDFLPAEEHWSDKKLEDMTSRDWRIFKEDFSITCKGNNIPNPLRSWKESGIPTTLLNT 164
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA---------- 134
+D+ GY PT IQR A+P RD + A+TGSGKTL +L+ + S ++A
Sbjct: 165 IDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEH 224
Query: 135 -QRSAVQAV---IVVPTRELGMQVTKVARVLAA 163
Q S + V ++ PTREL +Q++K A+ A+
Sbjct: 225 KQESNLNKVLGLVLAPTRELALQISKEAKKFAS 257
>gi|77415078|ref|ZP_00791134.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77158871|gb|EAO70126.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 275
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ R +DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ + V
Sbjct: 11 YIQRALDELKFVDPTDVQAKWIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSNDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+REL Q+ + + +A
Sbjct: 71 QVVITAPSRELATQIYQATKQIA 93
>gi|146420455|ref|XP_001486183.1| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
6260]
Length = 575
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 30 TNRAFLPVSISW--KPLRAVLSSSAVSIEELAAGT--GNN-SLTLRELCQGHVPEHVLRR 84
+N FLP W K L + S +E + T GNN LR + +P +L
Sbjct: 105 SNNDFLPAEEHWLDKKLEDMTSRDWRIFKEDFSITCKGNNIPNPLRSWKESGIPTTLLNT 164
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA---------- 134
+D+ GY PT IQR A+P RD + A+TGSGKTL +L+ + S ++A
Sbjct: 165 IDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEH 224
Query: 135 -QRSAVQAV---IVVPTRELGMQVTKVARVLAA 163
Q S + V ++ PTREL +Q++K A+ A+
Sbjct: 225 KQESNLNKVLGLVLAPTRELALQISKEAKKFAS 257
>gi|413937931|gb|AFW72482.1| putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 591
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P ++ ++++ G PT++Q A+P++ D ++ + TGSGKTL YLL I S +
Sbjct: 169 LPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSDIGPLK 228
Query: 133 -------NAQRSAVQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGG 184
+ +RS ++AVIV P+RELGMQ+ + V ++L P+D L V L+ G
Sbjct: 229 RTMEQDHSEKRSGIEAVIVAPSRELGMQIVREVEKILG--PNDKRL------VQQLVGGA 280
Query: 185 MLRRHKSWLK 194
R + LK
Sbjct: 281 NRSRQEEALK 290
>gi|168207373|ref|ZP_02633378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens E str. JGS1987]
gi|168216902|ref|ZP_02642527.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens NCTC 8239]
gi|182624735|ref|ZP_02952516.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens D str. JGS1721]
gi|170661259|gb|EDT13942.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens E str. JGS1987]
gi|177910132|gb|EDT72526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens D str. JGS1721]
gi|182381051|gb|EDT78530.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens NCTC 8239]
Length = 405
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + + ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 11 EEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 71 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 120
>gi|398814226|ref|ZP_10572907.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398036495|gb|EJL29704.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 414
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152
PT +Q EA+PV+ + RD ++ + TG+GKT YLL I S +N ++ VQA+++ PT EL +
Sbjct: 26 PTPVQSEAIPVILAGRDALIESPTGTGKTFAYLLPILSKINMEQKDVQAIVLAPTHELVV 85
Query: 153 QVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
Q+ + A L L K VM+++ G ++R LK
Sbjct: 86 QIAREAESL--------LPGKDTAVMSIIGGVDVKRQIERLK 119
>gi|195611596|gb|ACG27628.1| EMB1586 [Zea mays]
gi|223946723|gb|ACN27445.1| unknown [Zea mays]
Length = 573
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P ++ ++++ G PT++Q A+P++ D ++ + TGSGKTL YLL I S +
Sbjct: 138 LPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSDIGPLK 197
Query: 133 -------NAQRSAVQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGG 184
+ +RS ++AVIV P+RELGMQ+ + V ++L P+D L V L+ G
Sbjct: 198 RTMEQDHSEKRSGIEAVIVAPSRELGMQIVREVEKILG--PNDKRL------VQQLVGGA 249
Query: 185 MLRRHKSWLK 194
R + LK
Sbjct: 250 NRSRQEEALK 259
>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 7425]
gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
Length = 457
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 82 LRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA 141
++R++ G+ PT IQ +A+P L + RD I AQTG+GKT + L I ++ Q AVQA
Sbjct: 15 VQRLEALGFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPILERIDTQSPAVQA 74
Query: 142 VIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRH 189
+I+ PTREL +QV++ A P V+A+ G + R
Sbjct: 75 LILTPTRELAVQVSQSIYNFKADPK--------IRVLAIYGGQAIERQ 114
>gi|110802751|ref|YP_698816.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
gi|110683252|gb|ABG86622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens SM101]
Length = 405
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + + ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 11 EEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 71 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 120
>gi|357013998|ref|ZP_09078997.1| DEAD/DEAH box helicase domain-containing protein, partial
[Paenibacillus elgii B69]
Length = 406
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
M + GY PT IQ EA+PV + D I AQTG+GKTL + L I +N VQA+IV
Sbjct: 19 MQKHGYNEPTPIQSEAIPVALAGHDIIAQAQTGTGKTLAFALPILENINPANPNVQALIV 78
Query: 145 VPTRELGMQVTK 156
PTREL +Q+T+
Sbjct: 79 TPTRELAIQITE 90
>gi|418145981|ref|ZP_12782765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353815549|gb|EHD95765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
Length = 447
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|170760702|ref|YP_001787100.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 421
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ EA+P+ ++D I ++TG+GKTL YLL IF + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + +++ S+ D++ MA++ ++R LK
Sbjct: 85 MQINNEIKNISSN-SNIDVKS-----MAIIGEANIKRQIEKLK 121
>gi|406659623|ref|ZP_11067761.1| ATP-dependent RNA helicase DbpA [Streptococcus iniae 9117]
gi|405577732|gb|EKB51880.1| ATP-dependent RNA helicase DbpA [Streptococcus iniae 9117]
Length = 447
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ E++ + +D + PT++Q+ +PV+ S RD + ++TGSGKT T+LL IF +N
Sbjct: 7 NFKEYIQKALDAIHFTEPTEVQKRLIPVVKSGRDLVGESKTGSGKTHTFLLPIFEQLNED 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
+VQ VI P+REL Q+ A+ LA+
Sbjct: 67 SQSVQVVITAPSRELASQIFAAAKQLAS 94
>gi|417686202|ref|ZP_12335480.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA41301]
gi|332076039|gb|EGI86505.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA41301]
Length = 411
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 584
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+R QG PE +++ ++ GY PT+IQ+ PV S RD + AQTGSGKT+ ++L
Sbjct: 173 IRTFEQGQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPA 232
Query: 129 FSLVNAQRSAVQA-----VIVVPTRELGMQV 154
VNAQ +++VPTREL MQV
Sbjct: 233 IIHVNAQAPLKHGDGPVVLVLVPTRELAMQV 263
>gi|452820962|gb|EME27998.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 496
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E++ A GN + ++ +L + E G+ P+ IQ EA+PV + RD + A+
Sbjct: 112 EDVTATKGN------DFEDYYLKRELLMGIFEMGFEKPSPIQEEAIPVALAGRDILARAK 165
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
G+GKT YL+ + V+ +R+++QA+++VPTREL +Q V + L +
Sbjct: 166 NGTGKTAAYLIPVLERVDPKRNSIQALVLVPTRELALQTAHVCKQLGKR 214
>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|423424574|ref|ZP_17401605.1| hypothetical protein IE5_02263 [Bacillus cereus BAG3X2-2]
gi|423506009|ref|ZP_17482599.1| hypothetical protein IG1_03573 [Bacillus cereus HD73]
gi|449089347|ref|YP_007421788.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|401113346|gb|EJQ21215.1| hypothetical protein IE5_02263 [Bacillus cereus BAG3X2-2]
gi|402448940|gb|EJV80778.1| hypothetical protein IG1_03573 [Bacillus cereus HD73]
gi|449023104|gb|AGE78267.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 458
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++++ S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|149010613|ref|ZP_01831984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP19-BS75]
gi|303255825|ref|ZP_07341866.1| putative helicase [Streptococcus pneumoniae BS455]
gi|303266290|ref|ZP_07352181.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS457]
gi|387759018|ref|YP_006065996.1| putative helicase [Streptococcus pneumoniae INV200]
gi|418199714|ref|ZP_12836161.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|419442250|ref|ZP_13982281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|419514316|ref|ZP_14053944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419520699|ref|ZP_14060296.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|421267964|ref|ZP_15718836.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|147765094|gb|EDK72023.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP19-BS75]
gi|301801607|emb|CBW34305.1| putative helicase [Streptococcus pneumoniae INV200]
gi|302597209|gb|EFL64314.1| putative helicase [Streptococcus pneumoniae BS455]
gi|302644220|gb|EFL74476.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS457]
gi|353866392|gb|EHE46294.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|379540602|gb|EHZ05774.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379554217|gb|EHZ19297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|379638806|gb|EIA03351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395871388|gb|EJG82494.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
Length = 447
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|168213797|ref|ZP_02639422.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens CPE str. F4969]
gi|170714741|gb|EDT26923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens CPE str. F4969]
Length = 405
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + + ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 11 EEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 71 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 120
>gi|148985890|ref|ZP_01818984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP3-BS71]
gi|169832682|ref|YP_001694222.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
gi|387757188|ref|YP_006064167.1| putative helicase [Streptococcus pneumoniae OXC141]
gi|418075868|ref|ZP_12713107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418231827|ref|ZP_12858415.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418236126|ref|ZP_12862695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419479596|ref|ZP_14019404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419499289|ref|ZP_14038988.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|421229407|ref|ZP_15686083.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|421291566|ref|ZP_15742306.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA56348]
gi|421311508|ref|ZP_15762115.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA58981]
gi|444415009|ref|ZP_21211256.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0199]
gi|147922036|gb|EDK73160.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP3-BS71]
gi|168995184|gb|ACA35796.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
gi|301799777|emb|CBW32346.1| putative helicase [Streptococcus pneumoniae OXC141]
gi|353749657|gb|EHD30300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353888133|gb|EHE67909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353894055|gb|EHE73800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379573250|gb|EHZ38206.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379602343|gb|EHZ67114.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|395596911|gb|EJG57120.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|395894868|gb|EJH05845.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA56348]
gi|395912086|gb|EJH22949.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA58981]
gi|429317619|emb|CCP37407.1| putative helicase [Streptococcus pneumoniae SPN034156]
gi|429319161|emb|CCP32400.1| putative helicase [Streptococcus pneumoniae SPN034183]
gi|429320976|emb|CCP34374.1| putative helicase [Streptococcus pneumoniae SPN994039]
gi|429322796|emb|CCP30415.1| putative helicase [Streptococcus pneumoniae SPN994038]
gi|444280809|gb|ELU86160.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0199]
Length = 447
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|402224639|gb|EJU04701.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 589
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134
G PE + + + E GY+ PTD+Q + +PVL RD A TGSGKTL YLL +F L+ A
Sbjct: 141 GLAPE-LRKNIAEKGYLTPTDVQTQCIPVLLEKRDLAAIAPTGSGKTLAYLLPVFCLLGA 199
Query: 135 --------QRSAVQAVIVVPTRELGMQVTKVARVLA 162
+++ +A+IV PTREL MQ+ A LA
Sbjct: 200 PGRSGASEKQAGARALIVSPTRELAMQIHNEALKLA 235
>gi|421873722|ref|ZP_16305333.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372457268|emb|CCF14882.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 497
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G PT+IQ + +P + + D I AQTG+GKTL ++L I ++N + VQA+IV
Sbjct: 17 LQQNGLYSPTEIQEKGIPAVLTGVDVIAQAQTGTGKTLAFVLPILQMINPENPDVQALIV 76
Query: 145 VPTRELGMQVT-KVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
PTREL +Q+T +V +++ +P V+A+ G + R L+
Sbjct: 77 TPTRELALQITAEVNKLIFTQPG--------VQVLAIYGGQDVERQMKKLR 119
>gi|418159402|ref|ZP_12796104.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
gi|353824754|gb|EHE04922.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
Length = 461
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|422346179|ref|ZP_16427093.1| hypothetical protein HMPREF9476_01166 [Clostridium perfringens
WAL-14572]
gi|373226801|gb|EHP49123.1| hypothetical protein HMPREF9476_01166 [Clostridium perfringens
WAL-14572]
Length = 407
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + + ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 13 EEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 72
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 73 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 122
>gi|423563181|ref|ZP_17539457.1| hypothetical protein II5_02585 [Bacillus cereus MSX-A1]
gi|401199258|gb|EJR06163.1| hypothetical protein II5_02585 [Bacillus cereus MSX-A1]
Length = 450
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I +N + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKINPEFSDV 74
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINV 105
>gi|421206205|ref|ZP_15663269.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|395577285|gb|EJG37830.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
Length = 461
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 375
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 56/82 (68%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +++ + G PT +Q E++ ++ + RD I+ +QTG+GKTL +LL IF ++ +
Sbjct: 8 ISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLPIFENISTKV 67
Query: 137 SAVQAVIVVPTRELGMQVTKVA 158
AVQA+I+ PTREL +Q+T+ A
Sbjct: 68 DAVQALILTPTRELALQITEEA 89
>gi|423435903|ref|ZP_17412884.1| hypothetical protein IE9_02084 [Bacillus cereus BAG4X12-1]
gi|401123386|gb|EJQ31162.1| hypothetical protein IE9_02084 [Bacillus cereus BAG4X12-1]
Length = 446
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++++ S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSESSDV 74
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINV 105
>gi|418188986|ref|ZP_12825501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353856128|gb|EHE36097.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
Length = 447
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
Length = 458
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++++ S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSESSDV 74
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINV 105
>gi|419523116|ref|ZP_14062697.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|379558655|gb|EHZ23688.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
Length = 396
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|386586829|ref|YP_006083231.1| DEAD/DEAH box helicase [Streptococcus suis D12]
gi|353738975|gb|AER19983.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D12]
Length = 447
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E +V PT++Q + +PV+ S RD I ++TGSGKT T+L+ IF ++ + V
Sbjct: 11 YIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLSEELDQV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
QA I P+REL Q+ + AR LA S +D+E
Sbjct: 71 QAFIPAPSRELATQIYQAARQLA---SHSDIE 99
>gi|422880610|ref|ZP_16927066.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK355]
gi|332366381|gb|EGJ44132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK355]
Length = 447
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKIKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|421226932|ref|ZP_15683646.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2072047]
gi|395598002|gb|EJG58208.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2072047]
Length = 396
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418154792|ref|ZP_12791523.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353823084|gb|EHE03259.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
Length = 205
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
M E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +VQAVI
Sbjct: 1 MKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSVQAVIT 60
Query: 145 VPTRELGMQVTKVARVLAA 163
P+REL Q+ +VAR ++A
Sbjct: 61 APSRELATQIYQVARQISA 79
>gi|66802312|ref|XP_629938.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
gi|74896805|sp|Q54E49.1|DDX6_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
Full=DEAD box protein 6
gi|60463332|gb|EAL61523.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
Length = 423
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E++ A GN+ L H+ +LR + E GYV P+ IQ +A+P+ + RD + A+
Sbjct: 41 EDVTATEGNDFDDL------HLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAK 94
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
G+GKT ++L+ + + +Q +I+VPTREL +Q ++V + L
Sbjct: 95 NGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELG 141
>gi|377809468|ref|YP_005004689.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361056209|gb|AEV95013.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 454
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ PT +Q++ +P++ + + + +QTGSGKT +LL IF+ ++ ++A+QAVI P
Sbjct: 19 EAGFKTPTPVQKKIIPLIAAGKSVVGQSQTGSGKTHAFLLPIFNQIDLSQNAIQAVITTP 78
Query: 147 TRELGMQVTKVARVLAAKPSDTDLE 171
+REL Q+ + A+ LA+K S+T +E
Sbjct: 79 SRELAYQIYEAAKQLASK-SETPIE 102
>gi|330846058|ref|XP_003294872.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
gi|325074579|gb|EGC28605.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
Length = 413
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E++ A GN E H+ +LR + E GYV P+ IQ +A+P+ + RD + A+
Sbjct: 31 EDVTATEGN------EFDDLHLKRDLLRGIFEKGYVRPSPIQEKAIPIALAGRDIMARAK 84
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
G+GKT ++L+ + + +Q +I+VPTREL +Q ++V + L
Sbjct: 85 NGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELG 131
>gi|374995988|ref|YP_004971487.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214354|gb|AET68972.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 536
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 75 GHVP--EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV 132
G +P + +L+ + E G+ P+ IQR+A+PV D I AQTG+GKT + + + +V
Sbjct: 10 GDIPLSKPILQALSEMGFEEPSPIQRQAIPVALDGADLIGQAQTGTGKTAAFGIPVTEMV 69
Query: 133 NAQRSAVQAVIVVPTRELGMQVTK 156
N++ AVQA+IV PTREL +QV++
Sbjct: 70 NSRFQAVQALIVTPTRELAIQVSE 93
>gi|343502081|ref|ZP_08739943.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii ATCC 19109]
gi|418478069|ref|ZP_13047184.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342815660|gb|EGU50573.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii ATCC 19109]
gi|384574344|gb|EIF04816.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 458
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+L +D GY T IQ++ALP++ + +D I +TGSGKT T+ L + S +N QR V
Sbjct: 13 ELLETLDSLGYTQMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVQRFRV 72
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q +++ PTREL QV K R LA
Sbjct: 73 QTLVLCPTRELADQVAKEIRTLA 95
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ +D G+ PT IQREA+P+L S RD I AQTG+GKT + L I +
Sbjct: 11 EPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERLQPNGRR 70
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+++ PTREL +QV +
Sbjct: 71 PQALVLAPTRELAVQVAQ 88
>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 657
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 56/87 (64%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++P + R +D+ G+ +P+ IQ++A+PVLF RD AQTG+GKT + + + + ++
Sbjct: 55 NLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLLASIDTS 114
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
VQA+++ PTREL +QV++ A
Sbjct: 115 VRQVQALVLAPTRELAIQVSEAIESFA 141
>gi|421217253|ref|ZP_15674154.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070335]
gi|395584739|gb|EJG45131.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070335]
Length = 390
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|307702030|ref|ZP_07639038.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
mitis NCTC 12261]
gi|307616675|gb|EFN95864.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
mitis NCTC 12261]
Length = 447
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
+ +++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTKFQFKKYISEALEELKFTTPTEVQDKLIPIVLTGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ +VQAVI P+REL Q+ + AR +AA
Sbjct: 63 LDEADDSVQAVITAPSRELATQIYQAARQIAA 94
>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
Length = 497
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
+S+T +EL G PE ++ G+ PT+IQ +A+P L + RD + +QTG+GKT +
Sbjct: 2 SSITFQEL--GISPERATH-LENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAF 58
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L I ++ + AVQA+++ PTREL MQV
Sbjct: 59 SLPILERLDPNKRAVQALVLTPTRELAMQV 88
>gi|356557070|ref|XP_003546841.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47,
mitochondrial-like [Glycine max]
Length = 562
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 16/96 (16%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P ++ R+++ G+ +PT++Q A+P + ++ D I+ + TGSGKTL YLL I S+V R
Sbjct: 120 LPHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILSVVGPLR 179
Query: 137 S----------------AVQAVIVVPTRELGMQVTK 156
++AVIV P+RELGMQ+ +
Sbjct: 180 GKTPEGNSDGGESGKKLGIEAVIVAPSRELGMQIVR 215
>gi|322386910|ref|ZP_08060534.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
cristatus ATCC 51100]
gi|417922056|ref|ZP_12565545.1| DEAD/DEAH box helicase [Streptococcus cristatus ATCC 51100]
gi|321269192|gb|EFX52128.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
cristatus ATCC 51100]
gi|342832944|gb|EGU67232.1| DEAD/DEAH box helicase [Streptococcus cristatus ATCC 51100]
Length = 447
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + + +++ + + +V T++Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFNFKDYIQEALKDLNFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 ELDEEADSVQAVITAPSRELATQIYQAARQLAS 94
>gi|212274587|ref|NP_001130352.1| uncharacterized protein LOC100191447 [Zea mays]
gi|194688914|gb|ACF78541.1| unknown [Zea mays]
Length = 396
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P ++ ++++ G PT++Q A+P++ D ++ + TGSGKTL YLL I S +
Sbjct: 138 LPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSDIGPLK 197
Query: 133 -------NAQRSAVQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGG 184
+ +RS ++AVIV P+RELGMQ+ + V ++L P+D L V L+ G
Sbjct: 198 RTMEQDHSEKRSGIEAVIVAPSRELGMQIVREVEKILG--PNDKRL------VQQLVGGA 249
Query: 185 MLRRHKSWLK 194
R + LK
Sbjct: 250 NRSRQEEALK 259
>gi|417848063|ref|ZP_12494015.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus mitis
SK1073]
gi|339455088|gb|EGP67696.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus mitis
SK1073]
Length = 467
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTAPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|293365070|ref|ZP_06611787.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
oralis ATCC 35037]
gi|307702221|ref|ZP_07639181.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
gi|291316520|gb|EFE56956.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
oralis ATCC 35037]
gi|307624234|gb|EFO03211.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
Length = 447
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIAEALEELKFSTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|222153538|ref|YP_002562715.1| helicase [Streptococcus uberis 0140J]
gi|222114351|emb|CAR43072.1| putative helicase [Streptococcus uberis 0140J]
Length = 447
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ E++ + +D + PT++Q++ +P++ S RD + ++TGSGKT T+LL IF +
Sbjct: 7 NFKEYIQKALDAIRFQEPTEVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLKEN 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
VQAVI P+REL Q+ + AR +A+
Sbjct: 67 SQDVQAVITAPSRELATQIFEAARQIAS 94
>gi|110800080|ref|YP_696204.1| DEAD/DEAH box helicase [Clostridium perfringens ATCC 13124]
gi|422874435|ref|ZP_16920920.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens F262]
gi|110674727|gb|ABG83714.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens ATCC 13124]
gi|380304508|gb|EIA16796.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens F262]
Length = 405
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 11 EEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 71 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 120
>gi|339006826|ref|ZP_08639401.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338776035|gb|EGP35563.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 500
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G PT+IQ + +P + + D I AQTG+GKTL ++L I +VN + VQA+IV
Sbjct: 20 LQQNGLHSPTEIQEKGIPAVLTGVDVIAQAQTGTGKTLAFVLPILQMVNPENPDVQALIV 79
Query: 145 VPTRELGMQVT-KVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
PTREL +Q+T +V +++ +P V+A+ G + R L+
Sbjct: 80 TPTRELALQITAEVNKLIFTQPG--------VQVLAIYGGQDVERQMKKLR 122
>gi|322392273|ref|ZP_08065734.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
peroris ATCC 700780]
gi|321144808|gb|EFX40208.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
peroris ATCC 700780]
Length = 407
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q +++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTQFKFKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ + +VQ VI P+REL Q+ + AR +A
Sbjct: 63 LDEESDSVQVVITAPSRELATQIYQAARQIAG 94
>gi|300865385|ref|ZP_07110194.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
gi|300336620|emb|CBN55344.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
Length = 480
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +R ++ G+ PT IQ +A+P L + RD + AQTG+GKT + L I ++
Sbjct: 10 ISEERIRHLETLGFSEPTPIQTQAIPHLLAGRDVVGQAQTGTGKTAAFSLPILERIDLGV 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAA 163
+AVQA+I+ PTREL +QVT+ R L+
Sbjct: 70 TAVQALILTPTRELALQVTEAIRELSG 96
>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
CS-505]
gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
CS-505]
Length = 497
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
+S+T +EL G PE ++ G+ PT+IQ +A+P L + RD + +QTG+GKT +
Sbjct: 2 SSITFQEL--GISPERATH-LENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAF 58
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L I ++ + AVQA+++ PTREL MQV
Sbjct: 59 SLPILERLDPNKRAVQALVLTPTRELAMQV 88
>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
19.5.1]
gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
19.5.1]
Length = 524
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L +++ G+V PT IQ +A+PV+ + RD I A TG+GKT + + + +++ VQ
Sbjct: 14 MLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLLEMLDYSSKKVQ 73
Query: 141 AVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
A+I+ PTREL +Q VAR +AA S+ K V+A+ G + R + LK
Sbjct: 74 ALILCPTRELAVQ---VAREIAALASN----RKEIEVLAIYGGQSIERQINTLK 120
>gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
Length = 468
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P HVL + + GY+ T IQ +LPV +D I A+TGSGKT + L + + +NA+R
Sbjct: 13 LPAHVLANLQQLGYLSMTPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANLNARR 72
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
AVQA+++ PTREL QV R LA
Sbjct: 73 FAVQAMVLCPTRELADQVATEIRRLA 98
>gi|423459512|ref|ZP_17436309.1| hypothetical protein IEI_02652 [Bacillus cereus BAG5X2-1]
gi|401143433|gb|EJQ50968.1| hypothetical protein IEI_02652 [Bacillus cereus BAG5X2-1]
Length = 446
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
35185]
gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
35185]
Length = 446
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H PE ++ + G T +Q +A+P + S RD I+ AQTG+GKTL +LL + +
Sbjct: 7 HCPEVLVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGN 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
QA++V PTREL MQ +VA+ LA
Sbjct: 67 ARVAQALVVSPTRELAMQTARVAKTLA 93
>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 535
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSA 138
++L + E G+ PT IQR+A+PVL S R+C A TGSGKTL ++ ++ L ++ +
Sbjct: 149 YLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMKLKHSSKDG 208
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
++AVI+ PTREL Q T+ + +A
Sbjct: 209 IRAVILCPTRELASQTTRECKKMA 232
>gi|322376932|ref|ZP_08051425.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M334]
gi|321282739|gb|EFX59746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M334]
Length = 447
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
+ +++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF
Sbjct: 3 FTKFQFKKYISEALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQ 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
++ +VQAVI P+REL Q+ + AR +AA
Sbjct: 63 LDETSDSVQAVITAPSRELATQIYQAARQIAA 94
>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 699
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P+ +L + + G+ +PT IQ A+P L RD + AQTG+GKT + L + ++V+A
Sbjct: 44 LPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 103
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQA+++ PTREL MQ + AA+ + D+
Sbjct: 104 RDVQALVLAPTRELAMQSAQAIEDFAARAARLDV 137
>gi|423575831|ref|ZP_17551950.1| hypothetical protein II9_03052 [Bacillus cereus MSX-D12]
gi|401209156|gb|EJR15916.1| hypothetical protein II9_03052 [Bacillus cereus MSX-D12]
Length = 454
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ EA+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEEAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINV 105
>gi|418968819|ref|ZP_13520165.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383352525|gb|EID30218.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 447
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTAPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|355750194|gb|EHH54532.1| hypothetical protein EGM_15393, partial [Macaca fascicularis]
Length = 1029
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 367 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 426
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 427 FRHIMGQRSLEEGEGPIAVIMTPTRELALQITK 459
>gi|307705236|ref|ZP_07642104.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621209|gb|EFO00278.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 447
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|170763913|ref|ZP_02635037.2| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens B str. ATCC 3626]
gi|170712566|gb|EDT24748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens B str. ATCC 3626]
Length = 407
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ + G PTDIQ +A+P + ++ I A+TG+GKTL YLL I ++ ++
Sbjct: 13 EEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNE 72
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH---KPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PT ELG+Q+ V DL+ K T L+ G ++R LK
Sbjct: 73 MQAIILSPTHELGVQINNVL---------NDLKRGLGKKITSTTLVGSGNIKRQMEKLK 122
>gi|71018491|ref|XP_759476.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
gi|46098964|gb|EAK84197.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
Length = 534
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT Y++ +N +++ +QAV++VP
Sbjct: 164 EAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEKLNTKKNKIQAVLLVP 223
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++VA+ L +H VM G LR
Sbjct: 224 TRELALQTSQVAKTLG--------KHLGVEVMVTTGGTTLR 256
>gi|427407203|ref|ZP_18897408.1| hypothetical protein HMPREF9161_01768 [Selenomonas sp. F0473]
gi|425707678|gb|EKU70722.1| hypothetical protein HMPREF9161_01768 [Selenomonas sp. F0473]
Length = 428
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G V PT +Q A+P + + RD I AQTG+GKT +LL + + Q A QA++V PTR
Sbjct: 21 GIVAPTPVQERAIPPMRAGRDVIAQAQTGTGKTFAFLLPVLEKIKPQGQAAQALVVTPTR 80
Query: 149 ELGMQVTKVARVLAA 163
EL +Q +VA L A
Sbjct: 81 ELAIQTARVAEPLGA 95
>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
Length = 386
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
++++ + + G PTDIQ + +P+ ++D I + TGSGKTL YLL IF ++ +
Sbjct: 12 QNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLPIFQKIDTSKRE 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLAA 163
+QA+I+ PT EL MQ+ K ++L+
Sbjct: 72 MQAIILAPTHELAMQINKEIQLLSG 96
>gi|319939694|ref|ZP_08014053.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
gi|319811283|gb|EFW07589.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
Length = 447
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
E + +++ + + +V T++Q + +PV+ + RD + ++TGSGKT T+LL IF
Sbjct: 2 EFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+N +VQ VI P+REL Q+ + AR +AA
Sbjct: 62 KLNEDADSVQVVITAPSRELARQIYQAARQIAA 94
>gi|404370145|ref|ZP_10975472.1| hypothetical protein CSBG_02551 [Clostridium sp. 7_2_43FAA]
gi|226913724|gb|EEH98925.1| hypothetical protein CSBG_02551 [Clostridium sp. 7_2_43FAA]
Length = 481
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 56/81 (69%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ E +L+ + G+ P+++Q+E +P + +D ++ +QTGSGKT ++ + + LVN +
Sbjct: 10 NLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIPLCELVNVE 69
Query: 136 RSAVQAVIVVPTRELGMQVTK 156
+ V+A+I+VPTREL +QV +
Sbjct: 70 ENKVKALILVPTRELAIQVKE 90
>gi|443323680|ref|ZP_21052684.1| DNA/RNA helicase, superfamily II [Gloeocapsa sp. PCC 73106]
gi|442786662|gb|ELR96391.1| DNA/RNA helicase, superfamily II [Gloeocapsa sp. PCC 73106]
Length = 469
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
L HV EH +++ G++ PTDIQ +A+P L D + +QTG+GKT Y L I
Sbjct: 10 LSDAHV-EH----LEQLGFIDPTDIQIQAIPQLLQGHDVVGQSQTGTGKTAAYSLPILEQ 64
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTK 156
+ A + AVQA+I+ PTREL QV +
Sbjct: 65 IEADKQAVQALILTPTRELAQQVAQ 89
>gi|256830903|ref|YP_003159631.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256580079|gb|ACU91215.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 475
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152
P +Q ALPVL + + +L ++TGSGKTL YLL I + +NA+ VQAV++ PT EL M
Sbjct: 24 PLPVQEAALPVLMAGKSAMLVSRTGSGKTLAYLLPILAGINAESMHVQAVVLAPTHELAM 83
Query: 153 QVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
Q+ +VA LA D L V AL+ G + R LK
Sbjct: 84 QINRVATDLA---KDAGLG---VRVQALIGGAAVSRQIEGLK 119
>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Croceibacter atlanticus HTCC2559]
Length = 372
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSS-RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ + E G + PT+IQ +A+PVL D + AQTG+GKT Y L + L+NA ++ V
Sbjct: 13 LVKGLTELGIINPTEIQEQAIPVLLEKPTDFVGQAQTGTGKTAAYGLPMLELINASKNHV 72
Query: 140 QAVIVVPTRELGMQVTK 156
QA+++ PTREL MQV+K
Sbjct: 73 QALVLCPTRELAMQVSK 89
>gi|298713799|emb|CBJ27171.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1435
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 51 SAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS-RD 109
+A++I ++ S + R+L G VL+ + + G PTD+Q A+ L S RD
Sbjct: 818 TAINIADMETLEQQASFSFRDL--GIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRD 875
Query: 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
I+HA TGSGKTL YLL + + + +A+QAV+V P REL Q+ V L
Sbjct: 876 VIIHAHTGSGKTLAYLLPLIAATDPDSNALQAVVVAPGRELASQIFSVCEKL 927
>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Phascolarctobacterium succinatutens YIT 12067]
Length = 418
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H + ++ + G P +Q +A+P LF+ RD I AQTG+GKTL +L+ + ++ +S V
Sbjct: 13 HTVEQLQKMGIKKPMPVQEQAIPALFAGRDVIARAQTGTGKTLAFLVPLAEKIDTAKSYV 72
Query: 140 QAVIVVPTRELGMQV-TKVARVLA 162
QA+++ PTREL Q+ T++ ++L
Sbjct: 73 QALVITPTRELAQQIATEMKKILG 96
>gi|423523689|ref|ZP_17500162.1| hypothetical protein IGC_03072 [Bacillus cereus HuA4-10]
gi|401170825|gb|EJQ78060.1| hypothetical protein IGC_03072 [Bacillus cereus HuA4-10]
Length = 450
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 424
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G +PT +Q +A+P L S +D + AQTG+GKTL +LL I V + +QA+I+ P
Sbjct: 20 ELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLPILEKVKVDKPFIQALIITP 79
Query: 147 TRELGMQVTKVARVLAA 163
TREL +Q+T LA+
Sbjct: 80 TRELALQITAELNKLAS 96
>gi|414073710|ref|YP_006998927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
gi|413973630|gb|AFW91094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 446
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 54/81 (66%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + ++ + PT++Q++ +P++ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYINKTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQNINPELDE 69
Query: 139 VQAVIVVPTRELGMQVTKVAR 159
VQAVI P+REL Q+ K A+
Sbjct: 70 VQAVITAPSRELATQIYKAAQ 90
>gi|388854299|emb|CCF52042.1| probable ATP-dependent RNA helicase DHH1 [Ustilago hordei]
Length = 485
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT Y++ +N +++ +QAV++VP
Sbjct: 57 EAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEKLNTKKNKIQAVLLVP 116
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++VA+ L +H VM G LR
Sbjct: 117 TRELALQTSQVAKTLG--------KHLGVEVMVTTGGTTLR 149
>gi|423687698|ref|ZP_17662501.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
gi|371493481|gb|EHN69084.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
Length = 636
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 56/89 (62%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
S ++ E Q + E +L +D+ G+V PT IQ ++P+L RD + AQTG+GKT +
Sbjct: 2 SESITEFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFS 61
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + +N ++ QA+I+ PTREL +QV
Sbjct: 62 LPLLNKINLKQHNPQAIIMAPTRELAIQV 90
>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
Length = 640
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 56/89 (62%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
S ++ E Q + E +L +D+ G+V PT IQ ++P+L RD + AQTG+GKT +
Sbjct: 2 SESITEFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFS 61
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + +N ++ QA+I+ PTREL +QV
Sbjct: 62 LPLLNKINLKQHNPQAIIMAPTRELAIQV 90
>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
Length = 458
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+L +D GY T IQ++ALP++ S +D I +TGSGKT T+ L + S +N +R V
Sbjct: 13 ELLETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLSNLNVKRFRV 72
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q +++ PTREL QV K R LA
Sbjct: 73 QTLVLCPTRELADQVAKEIRTLA 95
>gi|443897741|dbj|GAC75080.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 488
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT Y++ +N +++ +QAV++VP
Sbjct: 57 EAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEKLNTKKNKIQAVLLVP 116
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++VA+ L +H VM G LR
Sbjct: 117 TRELALQTSQVAKTLG--------KHLGVEVMVTTGGTTLR 149
>gi|319411699|emb|CBQ73743.1| probable ATP-dependent RNA helicase DHH1 [Sporisorium reilianum
SRZ2]
Length = 491
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT Y++ +N +++ +QAV++VP
Sbjct: 57 EAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEKLNTKKNKIQAVLLVP 116
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++VA+ L +H VM G LR
Sbjct: 117 TRELALQTSQVAKTLG--------KHLGVEVMVTTGGTTLR 149
>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
Length = 450
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase [Desulfotomaculum acetoxidans DSM 771]
gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 446
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ E G PT IQ +A+PVL + +D + +QTG+GKTL +LL + + + VQ++I+
Sbjct: 26 LRENGITEPTPIQVQAIPVLMTGKDLLAQSQTGTGKTLAFLLPVLEKIEVNKPQVQSLII 85
Query: 145 VPTRELGMQVTKVARVLAAK 164
PTREL +Q+T A+ L K
Sbjct: 86 TPTRELALQITGEAKNLGDK 105
>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
Length = 454
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423510423|ref|ZP_17486954.1| hypothetical protein IG3_01920 [Bacillus cereus HuA2-1]
gi|402454013|gb|EJV85807.1| hypothetical protein IG3_01920 [Bacillus cereus HuA2-1]
Length = 450
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423454088|ref|ZP_17430941.1| hypothetical protein IEE_02832 [Bacillus cereus BAG5X1-1]
gi|401137058|gb|EJQ44642.1| hypothetical protein IEE_02832 [Bacillus cereus BAG5X1-1]
Length = 450
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|334119195|ref|ZP_08493282.1| DEAD/DEAH box helicase domain protein [Microcoleus vaginatus FGP-2]
gi|333458666|gb|EGK87283.1| DEAD/DEAH box helicase domain protein [Microcoleus vaginatus FGP-2]
Length = 495
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++ ++ G+ PT IQ +A+P L + RD + AQTG+GKT + L I ++ +A
Sbjct: 12 EELVLHLETLGFTEPTPIQVQAIPHLLAGRDVVGQAQTGTGKTAAFSLPILERIDLDVTA 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE-HKPCTVMALLDGGMLRRHKSWLK 194
VQA+++ PTREL MQVT+ R L+ S+ ++ + V+ + G + R LK
Sbjct: 72 VQALVLTPTRELAMQVTEAIRDLSGISSEGPVKVGRSLQVLTVYGGQSIDRQMQRLK 128
>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
Length = 450
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
Length = 454
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|421265790|ref|ZP_15716673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395868526|gb|EJG79643.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
Length = 396
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|330038915|ref|XP_003239739.1| RNA helicase [Cryptomonas paramecium]
gi|327206664|gb|AEA38841.1| RNA helicase [Cryptomonas paramecium]
Length = 425
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ E +L + E GY P+ IQ E++P + S +D + +++G+GKT +L+ ++N+Q
Sbjct: 61 HLKEEILLGIIELGYKAPSPIQEESIPAVLSGKDILARSKSGTGKTSAFLIPSLHMINSQ 120
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
+Q I+VPTREL Q + V + L SD
Sbjct: 121 NPYIQVTILVPTRELAFQTSYVCKKLGKYVSD 152
>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase [Anabaena variabilis ATCC 29413]
gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
29413]
Length = 513
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G+ PT+IQ +A+P L S RD + +QTG+GKT + L I ++ Q+ AVQA+++
Sbjct: 18 LEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVL 77
Query: 145 VPTRELGMQV 154
PTREL +QV
Sbjct: 78 TPTRELAIQV 87
>gi|423391251|ref|ZP_17368477.1| hypothetical protein ICG_03099 [Bacillus cereus BAG1X1-3]
gi|401637084|gb|EJS54837.1| hypothetical protein ICG_03099 [Bacillus cereus BAG1X1-3]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|445382486|ref|ZP_21427245.1| ATP-dependent RNA helicase [Streptococcus thermophilus MTCC 5460]
gi|445395138|ref|ZP_21428975.1| ATP-dependent RNA helicase [Streptococcus thermophilus MTCC 5461]
gi|444748596|gb|ELW73556.1| ATP-dependent RNA helicase [Streptococcus thermophilus MTCC 5461]
gi|444748695|gb|ELW73652.1| ATP-dependent RNA helicase [Streptococcus thermophilus MTCC 5460]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ +DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPESRD 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQ VI P+REL Q+ + + + AK SDT++
Sbjct: 70 VQVVITAPSRELATQIYQSTKQI-AKHSDTEI 100
>gi|363892772|ref|ZP_09319927.1| hypothetical protein HMPREF9630_02004 [Eubacteriaceae bacterium
CM2]
gi|402837161|ref|ZP_10885688.1| DEAD/DEAH box helicase [Eubacteriaceae bacterium OBRC8]
gi|361962765|gb|EHL15873.1| hypothetical protein HMPREF9630_02004 [Eubacteriaceae bacterium
CM2]
gi|402275576|gb|EJU24723.1| DEAD/DEAH box helicase [Eubacteriaceae bacterium OBRC8]
Length = 507
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 19/129 (14%)
Query: 67 LTLREL-CQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+ RE+ C + E++LR +D+ G+ T IQ + +P+ +D I +QTG+GKT+ +
Sbjct: 1 MNFREINC---INENILRAIDDMGFESMTQIQEQIIPIALEKKDVIGQSQTGTGKTVAFG 57
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVT-KVARVLAAKPSDT--------------DL 170
+ I ++ + +Q+VI+ PTREL +QV+ ++ R+L PS + L
Sbjct: 58 IPIIENIDFESEKIQSVIMTPTRELALQVSAEINRLLKYYPSKSVALYGGEEITKQIKRL 117
Query: 171 EHKPCTVMA 179
+ +PC ++A
Sbjct: 118 KDRPCIIVA 126
>gi|418112106|ref|ZP_12749109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|418132601|ref|ZP_12769474.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353785755|gb|EHD66173.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|353806557|gb|EHD86830.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|428318667|ref|YP_007116549.1| DEAD/DEAH box helicase domain protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428242347|gb|AFZ08133.1| DEAD/DEAH box helicase domain protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 494
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++ ++ G+ PT IQ +A+P L + RD + AQTG+GKT + L I ++ +A
Sbjct: 12 EELVLHLETLGFTEPTPIQVQAIPHLLAGRDVVGQAQTGTGKTAAFSLPILERIDLDVTA 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE-HKPCTVMALLDGGMLRRHKSWLK 194
VQA+++ PTREL MQVT R L+ D ++ + V+ + G + R LK
Sbjct: 72 VQALVLTPTRELAMQVTDAIRDLSGISGDGPVKIGRSLQVLTVYGGQSIDRQMQRLK 128
>gi|55821673|ref|YP_140115.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
gi|55823593|ref|YP_142034.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
gi|387910402|ref|YP_006340708.1| ATP-dependent RNA helicase [Streptococcus thermophilus MN-ZLW-002]
gi|418028637|ref|ZP_12667195.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
gi|55737658|gb|AAV61300.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
gi|55739578|gb|AAV63219.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
gi|354686857|gb|EHE86982.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
gi|387575337|gb|AFJ84043.1| ATP-dependent RNA helicase [Streptococcus thermophilus MN-ZLW-002]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ +DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPESRD 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQ VI P+REL Q+ + + + AK SDT++
Sbjct: 70 VQVVITAPSRELATQIYQSTKQI-AKHSDTEI 100
>gi|418074099|ref|ZP_12711355.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA11184]
gi|353749599|gb|EHD30243.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA11184]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 477
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR +DE GY PT +QR+A+PV+ RD + AQTG+GKT + L + L+N++
Sbjct: 12 ILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNSREAQNK 71
Query: 136 ---RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 72 GKGRRPVRALILTPTRELAAQIDE 95
>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|116628386|ref|YP_821005.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
gi|116101663|gb|ABJ66809.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
LMD-9]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ +DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPESRD 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQ VI P+REL Q+ + + + AK SDT++
Sbjct: 70 VQVVITAPSRELATQIYQSTKQI-AKHSDTEI 100
>gi|410476203|ref|YP_006742962.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|444387420|ref|ZP_21185442.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS125219]
gi|444390120|ref|ZP_21188035.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS70012]
gi|444393058|ref|ZP_21190718.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS81218]
gi|444394247|ref|ZP_21191800.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0002]
gi|444397198|ref|ZP_21194685.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0006]
gi|444400051|ref|ZP_21197474.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0007]
gi|444401591|ref|ZP_21198775.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0008]
gi|444405279|ref|ZP_21202192.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0009]
gi|444408873|ref|ZP_21205503.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0010]
gi|444416744|ref|ZP_21212823.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0360]
gi|444419281|ref|ZP_21215154.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0427]
gi|406369148|gb|AFS42838.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|444253294|gb|ELU59752.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS125219]
gi|444256583|gb|ELU62921.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS70012]
gi|444261314|gb|ELU67618.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0002]
gi|444262429|gb|ELU68727.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0006]
gi|444262504|gb|ELU68800.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS81218]
gi|444267437|gb|ELU73340.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0007]
gi|444267915|gb|ELU73798.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0008]
gi|444269167|gb|ELU74982.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0010]
gi|444274642|gb|ELU80287.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0009]
gi|444285213|gb|ELU90294.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0360]
gi|444287124|gb|ELU92065.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0427]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|423517202|ref|ZP_17493683.1| hypothetical protein IG7_02272 [Bacillus cereus HuA2-4]
gi|423668136|ref|ZP_17643165.1| hypothetical protein IKO_01833 [Bacillus cereus VDM034]
gi|423675737|ref|ZP_17650676.1| hypothetical protein IKS_03280 [Bacillus cereus VDM062]
gi|401163474|gb|EJQ70819.1| hypothetical protein IG7_02272 [Bacillus cereus HuA2-4]
gi|401302127|gb|EJS07707.1| hypothetical protein IKO_01833 [Bacillus cereus VDM034]
gi|401308761|gb|EJS14156.1| hypothetical protein IKS_03280 [Bacillus cereus VDM062]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|418213930|ref|ZP_12840665.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353871213|gb|EHE51084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
Length = 411
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418152497|ref|ZP_12789237.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA16121]
gi|353819142|gb|EHD99340.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA16121]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|386087301|ref|YP_006003175.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
gi|386345403|ref|YP_006041567.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|312279014|gb|ADQ63671.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
gi|339278864|emb|CCC20612.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ +DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPESRD 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQ VI P+REL Q+ + + + AK SDT++
Sbjct: 70 VQVVITAPSRELATQIYQSTKQI-AKHSDTEI 100
>gi|237650467|ref|ZP_04524719.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
1974]
gi|237821903|ref|ZP_04597748.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
1974M2]
gi|418125365|ref|ZP_12762281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|419484375|ref|ZP_14024151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|421235917|ref|ZP_15692518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|421300614|ref|ZP_15751285.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA19998]
gi|353799409|gb|EHD79728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|379583886|gb|EHZ48763.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|395604836|gb|EJG64968.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|395900038|gb|EJH10977.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA19998]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
gi|423487608|ref|ZP_17464290.1| hypothetical protein IEU_02231 [Bacillus cereus BtB2-4]
gi|423493331|ref|ZP_17469975.1| hypothetical protein IEW_02229 [Bacillus cereus CER057]
gi|423499877|ref|ZP_17476494.1| hypothetical protein IEY_03104 [Bacillus cereus CER074]
gi|423600206|ref|ZP_17576206.1| hypothetical protein III_03008 [Bacillus cereus VD078]
gi|423662694|ref|ZP_17637863.1| hypothetical protein IKM_03091 [Bacillus cereus VDM022]
gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
gi|401153002|gb|EJQ60429.1| hypothetical protein IEW_02229 [Bacillus cereus CER057]
gi|401157135|gb|EJQ64537.1| hypothetical protein IEY_03104 [Bacillus cereus CER074]
gi|401233732|gb|EJR40220.1| hypothetical protein III_03008 [Bacillus cereus VD078]
gi|401297351|gb|EJS02962.1| hypothetical protein IKM_03091 [Bacillus cereus VDM022]
gi|402435673|gb|EJV67706.1| hypothetical protein IEU_02231 [Bacillus cereus BtB2-4]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|225856436|ref|YP_002737947.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
gi|444410187|ref|ZP_21206735.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0076]
gi|444411903|ref|ZP_21208229.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0153]
gi|444422604|ref|ZP_21218253.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0446]
gi|225725948|gb|ACO21800.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
gi|444275235|gb|ELU80862.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0153]
gi|444278118|gb|ELU83594.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0076]
gi|444288032|gb|ELU92935.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PNI0446]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
Length = 441
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G T +Q +A+P++ + DCI+ AQTG+GKTL +LL I + Q + QA+++ PTR
Sbjct: 21 GIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLPIIEKIKPQAAVTQALVITPTR 80
Query: 149 ELGMQVTKVARVLAA 163
EL +Q+ KVA+ L+A
Sbjct: 81 ELAIQIAKVAQSLSA 95
>gi|405760926|ref|YP_006701522.1| helicase [Streptococcus pneumoniae SPNA45]
gi|404277815|emb|CCM08371.1| putative helicase [Streptococcus pneumoniae SPNA45]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
Length = 778
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ + E + +N +T++ E +G P++V+ + + G+
Sbjct: 107 YKPCESVLARTQGETETFLS---SNEITIKGNEVPTPSIEFEEGGFPDYVMNEIRKQGFT 163
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + +P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 164 KPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 223
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 224 TRELAQQIQQVA 235
>gi|149007640|ref|ZP_01831257.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
gi|147760795|gb|EDK67766.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
Length = 412
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|423593605|ref|ZP_17569636.1| hypothetical protein IIG_02473 [Bacillus cereus VD048]
gi|401226627|gb|EJR33166.1| hypothetical protein IIG_02473 [Bacillus cereus VD048]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423482311|ref|ZP_17459001.1| hypothetical protein IEQ_02089 [Bacillus cereus BAG6X1-2]
gi|401143615|gb|EJQ51149.1| hypothetical protein IEQ_02089 [Bacillus cereus BAG6X1-2]
Length = 442
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|15902714|ref|NP_358264.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
gi|116516888|ref|YP_816157.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|168492910|ref|ZP_02717053.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC3059-06]
gi|182683681|ref|YP_001835428.1| DEAD/DEAH box helicase [Streptococcus pneumoniae CGSP14]
gi|221231556|ref|YP_002510708.1| helicase [Streptococcus pneumoniae ATCC 700669]
gi|303260226|ref|ZP_07346197.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP-BS293]
gi|303264099|ref|ZP_07350020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS397]
gi|415697651|ref|ZP_11456881.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
gi|415749166|ref|ZP_11477110.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|415751848|ref|ZP_11478959.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|418078250|ref|ZP_12715473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418089151|ref|ZP_12726309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098125|ref|ZP_12735225.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418114245|ref|ZP_12751236.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418116483|ref|ZP_12753457.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123024|ref|ZP_12759959.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418173120|ref|ZP_12809734.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418182356|ref|ZP_12818917.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|418216208|ref|ZP_12842932.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|419433417|ref|ZP_13973536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|419439969|ref|ZP_13980023.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419464342|ref|ZP_14004235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419468631|ref|ZP_14008502.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419472814|ref|ZP_14012665.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419495057|ref|ZP_14034777.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|419496940|ref|ZP_14036651.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419534200|ref|ZP_14073706.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|421280741|ref|ZP_15731540.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA04672]
gi|421302571|ref|ZP_15753236.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA17484]
gi|421309189|ref|ZP_15759818.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA62681]
gi|15458257|gb|AAK99474.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
gi|116077464|gb|ABJ55184.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae D39]
gi|182629015|gb|ACB89963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae CGSP14]
gi|183576996|gb|EDT97524.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC3059-06]
gi|220674016|emb|CAR68529.1| putative helicase [Streptococcus pneumoniae ATCC 700669]
gi|302638550|gb|EFL69014.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP-BS293]
gi|302646504|gb|EFL76730.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS397]
gi|353747441|gb|EHD28097.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353762838|gb|EHD43396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353770490|gb|EHD51003.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353787543|gb|EHD67945.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353790321|gb|EHD70704.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353798497|gb|EHD78827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353839819|gb|EHE19893.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353850593|gb|EHE30597.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353873259|gb|EHE53120.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|379539561|gb|EHZ04740.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379546734|gb|EHZ11872.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379552321|gb|EHZ17410.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379567244|gb|EHZ32230.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|379577547|gb|EHZ42466.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379580580|gb|EHZ45470.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379597421|gb|EHZ62224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|379601454|gb|EHZ66227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|381309544|gb|EIC50377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|381317460|gb|EIC58185.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|381319249|gb|EIC59965.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
gi|395884098|gb|EJG95140.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA04672]
gi|395903385|gb|EJH14317.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA17484]
gi|395911933|gb|EJH22797.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA62681]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418134491|ref|ZP_12771349.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|353903081|gb|EHE78607.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
Length = 411
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|407478557|ref|YP_006792434.1| DEAD/DEAH box helicase [Exiguobacterium antarcticum B7]
gi|407062636|gb|AFS71826.1| DEAD/DEAH box helicase domain protein [Exiguobacterium antarcticum
B7]
Length = 410
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ E ++++ + G PT IQ +A+P L + RD I AQTG+GKTL +LL I ++
Sbjct: 8 HIQELWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLPILEQIDLD 67
Query: 136 RSAVQAVIVVPTRELGMQV 154
VQA+IV PTREL Q+
Sbjct: 68 NKTVQALIVAPTRELARQI 86
>gi|423365773|ref|ZP_17343206.1| hypothetical protein IC3_00875 [Bacillus cereus VD142]
gi|401089504|gb|EJP97670.1| hypothetical protein IC3_00875 [Bacillus cereus VD142]
Length = 446
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|418191308|ref|ZP_12827812.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353857209|gb|EHE37172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418109723|ref|ZP_12746752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353785016|gb|EHD65436.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
Length = 411
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|417693686|ref|ZP_12342875.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|332204769|gb|EGJ18834.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|148989841|ref|ZP_01821135.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
gi|147924783|gb|EDK75867.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
Length = 401
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena
XCL-2]
Length = 393
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--- 137
+++ + E GY PTDIQ++A+P++ S +D + AQTG+GKT +++L + +N +
Sbjct: 12 IVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLLEKLNTDNAIRG 71
Query: 138 -AVQAVIVVPTRELGMQV 154
+++A+I+VPTREL MQV
Sbjct: 72 RSIRALILVPTRELAMQV 89
>gi|363889902|ref|ZP_09317252.1| hypothetical protein HMPREF9628_01748 [Eubacteriaceae bacterium
CM5]
gi|363894857|ref|ZP_09321912.1| hypothetical protein HMPREF9629_02181 [Eubacteriaceae bacterium
ACC19a]
gi|361961266|gb|EHL14481.1| hypothetical protein HMPREF9629_02181 [Eubacteriaceae bacterium
ACC19a]
gi|361966184|gb|EHL19117.1| hypothetical protein HMPREF9628_01748 [Eubacteriaceae bacterium
CM5]
Length = 507
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 19/129 (14%)
Query: 67 LTLREL-CQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+ RE+ C + E++LR +D+ G+ T IQ + +P+ +D I +QTG+GKT+ +
Sbjct: 1 MNFREINC---INENILRAIDDMGFENMTQIQEQIIPIALEKKDVIGQSQTGTGKTVAFG 57
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVT-KVARVLAAKPSDT--------------DL 170
+ I ++ + +Q+VI+ PTREL +QV+ ++ R+L PS + L
Sbjct: 58 IPIIENIDFESEKIQSVIMTPTRELALQVSAEINRLLKYYPSKSVALYGGEEITKQIKRL 117
Query: 171 EHKPCTVMA 179
+ +PC ++A
Sbjct: 118 KDRPCIIVA 126
>gi|334133814|ref|ZP_08507355.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333608571|gb|EGL19862.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 434
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147
+G PT IQ++ALPV+F D I AQTG+GKTL +LL + N R+ VQ +I+ PT
Sbjct: 21 SGVSDPTPIQQQALPVVFRGGDVIAQAQTGTGKTLAFLLPMLERTNPTRAEVQGLILTPT 80
Query: 148 RELGMQVTKVARVLA 162
REL +Q+ A LA
Sbjct: 81 RELAIQIAAEAAKLA 95
>gi|306829191|ref|ZP_07462381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
mitis ATCC 6249]
gi|304428277|gb|EFM31367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
mitis ATCC 6249]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 18 YIAEALEELKFETPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 77
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 78 QAVITAPSRELATQIYQAARQIAA 101
>gi|226312873|ref|YP_002772767.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226095821|dbj|BAH44263.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 414
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152
PT +Q EA+P++ + RD ++ + TG+GKT YLL I S VN ++ VQA+++ PT EL +
Sbjct: 26 PTPVQSEAIPLIMAGRDALVESPTGTGKTFAYLLPILSKVNMEQKDVQAIVLAPTHELVV 85
Query: 153 QVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
Q+ + A L L K VM+++ G ++R LK
Sbjct: 86 QIAREAESL--------LPGKDTAVMSIIGGVDVKRQIEKLK 119
>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|418170972|ref|ZP_12807599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|353837142|gb|EHE17228.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
Length = 411
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423551771|ref|ZP_17528098.1| hypothetical protein IGW_02402 [Bacillus cereus ISP3191]
gi|401187609|gb|EJQ94682.1| hypothetical protein IGW_02402 [Bacillus cereus ISP3191]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 481
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL + + GY P+ IQ +A+P L + D I AQTGSGKT + L + V+ VQ
Sbjct: 13 VLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEYVDPSDRDVQ 72
Query: 141 AVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
A+++ PTREL +QVT+ R A+ K V+A+ G +R ++ L+
Sbjct: 73 ALVLTPTRELCIQVTQALRSYGAR--------KGIDVVAVFGGAPIRSQQAQLR 118
>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 513
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G+ PT+IQ +A+P L S RD + +QTG+GKT + L I ++ Q+ AVQA+++
Sbjct: 18 LEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVL 77
Query: 145 VPTRELGMQV 154
PTREL +QV
Sbjct: 78 TPTRELAIQV 87
>gi|423468785|ref|ZP_17445529.1| hypothetical protein IEM_00091 [Bacillus cereus BAG6O-2]
gi|402440136|gb|EJV72129.1| hypothetical protein IEM_00091 [Bacillus cereus BAG6O-2]
Length = 448
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|225860734|ref|YP_002742243.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229616|ref|ZP_06963297.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255810|ref|ZP_06979396.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502545|ref|YP_003724485.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387787922|ref|YP_006252990.1| ATP-dependent RNA helicase DeaD [Streptococcus pneumoniae ST556]
gi|417312331|ref|ZP_12099045.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418082636|ref|ZP_12719838.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|418084832|ref|ZP_12722018.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418093600|ref|ZP_12730729.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418100480|ref|ZP_12737568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418118696|ref|ZP_12755654.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418141358|ref|ZP_12778171.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418195657|ref|ZP_12832137.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198259|ref|ZP_12834719.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418227349|ref|ZP_12853968.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419426916|ref|ZP_13967099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429017|ref|ZP_13969186.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419435635|ref|ZP_13975730.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419437717|ref|ZP_13977789.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419449052|ref|ZP_13989049.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419450734|ref|ZP_13990721.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|419501499|ref|ZP_14041185.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419527596|ref|ZP_14067140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|421287247|ref|ZP_15738013.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA58771]
gi|225727110|gb|ACO22961.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238140|gb|ADI69271.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
gi|327390117|gb|EGE88460.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353758073|gb|EHD38666.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|353760067|gb|EHD40649.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353765476|gb|EHD46018.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353773189|gb|EHD53688.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353791397|gb|EHD71775.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353805609|gb|EHD85883.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353862184|gb|EHE42117.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862897|gb|EHE42827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353882950|gb|EHE62759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379137664|gb|AFC94455.1| ATP-dependent RNA helicase DeaD [Streptococcus pneumoniae ST556]
gi|379540171|gb|EHZ05345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379552277|gb|EHZ17367.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379566541|gb|EHZ31529.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|379601860|gb|EHZ66632.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379616412|gb|EHZ81108.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379618369|gb|EHZ83044.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379624110|gb|EHZ88743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379624633|gb|EHZ89264.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|395889656|gb|EJH00663.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA58771]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|15900655|ref|NP_345259.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TIGR4]
gi|111658348|ref|ZP_01409036.1| hypothetical protein SpneT_02000488 [Streptococcus pneumoniae
TIGR4]
gi|149025531|ref|ZP_01836464.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP23-BS72]
gi|168484834|ref|ZP_02709779.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC1873-00]
gi|225854268|ref|YP_002735780.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
gi|303261432|ref|ZP_07347380.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS292]
gi|303268729|ref|ZP_07354519.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS458]
gi|307127689|ref|YP_003879720.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
gi|417676511|ref|ZP_12325924.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418091374|ref|ZP_12728519.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418095862|ref|ZP_12732977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418129927|ref|ZP_12766811.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139075|ref|ZP_12775906.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418143572|ref|ZP_12780372.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418148192|ref|ZP_12784957.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418161798|ref|ZP_12798489.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|418168852|ref|ZP_12805498.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418175563|ref|ZP_12812161.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418186767|ref|ZP_12823297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418218499|ref|ZP_12845167.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418225184|ref|ZP_12851813.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|418229499|ref|ZP_12856106.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|419422280|ref|ZP_13962499.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419459605|ref|ZP_13999541.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419461885|ref|ZP_14001801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419466729|ref|ZP_14006612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419477425|ref|ZP_14017250.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419481783|ref|ZP_14021577.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
gi|419488338|ref|ZP_14028091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419492907|ref|ZP_14032634.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|419516440|ref|ZP_14056058.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|419525503|ref|ZP_14065068.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|421210712|ref|ZP_15667700.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421231526|ref|ZP_15688173.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421233759|ref|ZP_15690381.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421240327|ref|ZP_15696874.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|421242752|ref|ZP_15699274.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421272402|ref|ZP_15723249.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421289404|ref|ZP_15740156.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA54354]
gi|421298227|ref|ZP_15748916.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA60080]
gi|421304724|ref|ZP_15755380.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA62331]
gi|421306945|ref|ZP_15757591.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA60132]
gi|14972235|gb|AAK74899.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae TIGR4]
gi|147929403|gb|EDK80400.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP23-BS72]
gi|172041993|gb|EDT50039.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC1873-00]
gi|225722536|gb|ACO18389.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
gi|302637566|gb|EFL68053.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS292]
gi|302641789|gb|EFL72146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS458]
gi|306484751|gb|ADM91620.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
gi|332077176|gb|EGI87638.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353766747|gb|EHD47287.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353770849|gb|EHD51360.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353803219|gb|EHD83511.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353809313|gb|EHD89573.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353812867|gb|EHD93100.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353831388|gb|EHE11517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|353836771|gb|EHE16859.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353844123|gb|EHE24167.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353853353|gb|EHE33336.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353876696|gb|EHE56545.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353882492|gb|EHE62303.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|353889685|gb|EHE69453.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353905912|gb|EHE81328.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379534477|gb|EHY99689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379534776|gb|EHY99986.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379544852|gb|EHZ09996.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379559894|gb|EHZ24921.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|379566807|gb|EHZ31794.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379581462|gb|EHZ46347.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
gi|379589611|gb|EHZ54450.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379590453|gb|EHZ55291.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379594945|gb|EHZ59754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|379640443|gb|EIA04982.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395574585|gb|EJG35162.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395596625|gb|EJG56841.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395602656|gb|EJG62798.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395608909|gb|EJG68999.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395610072|gb|EJG70153.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395877961|gb|EJG89030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395890664|gb|EJH01670.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA54354]
gi|395903499|gb|EJH14429.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA60080]
gi|395905386|gb|EJH16291.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA62331]
gi|395908908|gb|EJH19785.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA60132]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|22330935|ref|NP_187583.2| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana]
gi|75328099|sp|Q84TG1.1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57
gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis thaliana]
gi|110742885|dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332641282|gb|AEE74803.1| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana]
Length = 541
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 14/110 (12%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C+G++ LR + E G+ PT IQR+A+P+L S R+C
Sbjct: 128 SGNNIPPPLKSFAELSSRYGCEGYI----LRNLAELGFKEPTPIQRQAIPILLSGRECFA 183
Query: 113 HAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKT ++ ++ L ++AVI+ P REL Q + + L
Sbjct: 184 CAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKL 233
>gi|418080202|ref|ZP_12717417.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353753813|gb|EHD34429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|421282947|ref|ZP_15733736.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA04216]
gi|395882813|gb|EJG93857.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA04216]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|373453962|ref|ZP_09545842.1| hypothetical protein HMPREF9453_00011 [Dialister succinatiphilus
YIT 11850]
gi|371936225|gb|EHO63954.1| hypothetical protein HMPREF9453_00011 [Dialister succinatiphilus
YIT 11850]
Length = 424
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G +PT IQ+ ++P +F +D I +QTG+GKTL YLL + V+ R A Q +I+ PTR
Sbjct: 21 GIKMPTPIQQASIPSIFKGKDLIGRSQTGTGKTLAYLLPVIQRVDKDRGATQVLIMTPTR 80
Query: 149 ELGMQVTKVARVLAAK 164
EL QV V R A K
Sbjct: 81 ELSKQVFDVFRPFALK 96
>gi|418166373|ref|ZP_12803029.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353829969|gb|EHE10099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|225858570|ref|YP_002740080.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
70585]
gi|387626138|ref|YP_006062310.1| putative helicase [Streptococcus pneumoniae INV104]
gi|418086500|ref|ZP_12723671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418202037|ref|ZP_12838467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|419455165|ref|ZP_13995125.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419490689|ref|ZP_14030429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419531997|ref|ZP_14071515.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|421274671|ref|ZP_15725503.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421285059|ref|ZP_15735836.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA60190]
gi|444384021|ref|ZP_21182189.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS8106]
gi|444386514|ref|ZP_21184565.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS8203]
gi|225721139|gb|ACO16993.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
70585]
gi|301793920|emb|CBW36316.1| putative helicase [Streptococcus pneumoniae INV104]
gi|353759763|gb|EHD40346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353867840|gb|EHE47730.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|379594268|gb|EHZ59078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379608753|gb|EHZ73498.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|379629622|gb|EHZ94216.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395875399|gb|EJG86480.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395887038|gb|EJG98053.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA60190]
gi|444247521|gb|ELU54069.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS8203]
gi|444247616|gb|ELU54155.1| putative DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pneumoniae PCS8106]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418220681|ref|ZP_12847337.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353877550|gb|EHE57393.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418180117|ref|ZP_12816689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|421249063|ref|ZP_15705526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|353846083|gb|EHE26118.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|395615692|gb|EJG75708.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418127611|ref|ZP_12764507.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353800072|gb|EHD80386.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|228477005|ref|ZP_04061643.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
gi|340399563|ref|YP_004728588.1| putative ATP-dependent RNA helicase yqfR [Streptococcus salivarius
CCHSS3]
gi|228251024|gb|EEK10195.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
gi|338743556|emb|CCB94066.1| putative ATP-dependent RNA helicase yqfR [Streptococcus salivarius
CCHSS3]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + VQ VI
Sbjct: 16 LDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPKSGDVQVVIT 75
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDL 170
P+REL Q+ + + + AK SDT++
Sbjct: 76 APSRELATQIYQATKQI-AKHSDTEI 100
>gi|148997163|ref|ZP_01824817.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP11-BS70]
gi|168575420|ref|ZP_02721356.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
MLV-016]
gi|307067364|ref|YP_003876330.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|418102477|ref|ZP_12739553.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419470722|ref|ZP_14010581.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419475154|ref|ZP_14014995.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419486264|ref|ZP_14026031.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|419503571|ref|ZP_14043242.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|421208593|ref|ZP_15665617.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421244589|ref|ZP_15701092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421313935|ref|ZP_15764525.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA47562]
gi|147756863|gb|EDK63903.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP11-BS70]
gi|183578611|gb|EDT99139.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
MLV-016]
gi|306408901|gb|ADM84328.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|353776643|gb|EHD57118.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379545438|gb|EHZ10577.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379561492|gb|EHZ26509.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379589173|gb|EHZ54013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|379609169|gb|EHZ73910.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|395576050|gb|EJG36609.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395610247|gb|EJG70326.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395914435|gb|EJH25279.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA47562]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|423610880|ref|ZP_17586741.1| hypothetical protein IIM_01595 [Bacillus cereus VD107]
gi|401248333|gb|EJR54655.1| hypothetical protein IIM_01595 [Bacillus cereus VD107]
Length = 448
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGIAEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|418238332|ref|ZP_12864888.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353894755|gb|EHE74496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418150911|ref|ZP_12787658.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|419424791|ref|ZP_13964991.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419446499|ref|ZP_13986504.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|419518564|ref|ZP_14058171.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|353814794|gb|EHD95017.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|379614039|gb|EHZ78749.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379620446|gb|EHZ85102.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379641543|gb|EIA06078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDTESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|168486746|ref|ZP_02711254.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC1087-00]
gi|418193397|ref|ZP_12829890.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|419510079|ref|ZP_14049723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419529880|ref|ZP_14069411.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421214948|ref|ZP_15671879.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|183570245|gb|EDT90773.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC1087-00]
gi|353860120|gb|EHE40067.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|379574620|gb|EHZ39558.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379633272|gb|EHZ97841.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|395582507|gb|EJG42969.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|419431158|ref|ZP_13971304.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|379632402|gb|EHZ96978.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|417698184|ref|ZP_12347357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|419452744|ref|ZP_13992718.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419505704|ref|ZP_14045365.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|421270183|ref|ZP_15721040.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|332202625|gb|EGJ16694.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|379607618|gb|EHZ72364.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379627328|gb|EHZ91940.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|395870835|gb|EJG81948.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|194398476|ref|YP_002037408.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
gi|194358143|gb|ACF56591.1| ATP-dependent RNA helicase, DEAD/DEAH box helicase [Streptococcus
pneumoniae G54]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|148992424|ref|ZP_01822119.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
gi|168488430|ref|ZP_02712629.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
gi|417678735|ref|ZP_12328132.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|418233951|ref|ZP_12860531.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419507825|ref|ZP_14047479.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|421219944|ref|ZP_15676799.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222275|ref|ZP_15679069.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421278525|ref|ZP_15729335.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421293780|ref|ZP_15744504.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA56113]
gi|147928741|gb|EDK79754.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
gi|183573033|gb|EDT93561.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
gi|332073114|gb|EGI83593.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|353889390|gb|EHE69161.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|379612670|gb|EHZ77387.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|395589599|gb|EJG49917.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395590019|gb|EJG50334.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395881897|gb|EJG92945.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395895112|gb|EJH06088.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA56113]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|65319765|ref|ZP_00392724.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
Length = 210
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 72 QALIVAPTRELALQITTEIKKMLVQREDINV 102
>gi|449019165|dbj|BAM82567.1| similar to RNA helicase with DEAD motif [Cyanidioschyzon merolae
strain 10D]
Length = 614
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 61 GTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS----------RDC 110
G S + RE +P +L R++ G+ T IQ+ AL + RD
Sbjct: 149 GEQRESGSFRERYASRLPAWLLTRLESVGFHRYTPIQKAALDHFLGTDESAQGEERARDA 208
Query: 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
++ +TGSGKTL YL+ + + V RSAVQ +++VPT EL +QV +VAR LA
Sbjct: 209 VVFGETGSGKTLAYLIPLLATVKPTRSAVQGLVIVPTPELAVQVYRVARRLA 260
>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 634
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 56/89 (62%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
S ++ E Q + E +L +D+ G+V PT IQ ++P+L RD + AQTG+GKT +
Sbjct: 2 SESITEFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFS 61
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + +N ++ QA+I+ PTREL +QV
Sbjct: 62 LPLLNKINLKQHNPQAIIMAPTRELAIQV 90
>gi|387760626|ref|YP_006067603.1| ATP-dependent RNA helicase [Streptococcus salivarius 57.I]
gi|339291393|gb|AEJ52740.1| ATP-dependent RNA helicase [Streptococcus salivarius 57.I]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + VQ VI
Sbjct: 16 LDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPKSGDVQVVIT 75
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDL 170
P+REL Q+ + + + AK SDT++
Sbjct: 76 APSRELATQIYQATKQI-AKHSDTEI 100
>gi|149003379|ref|ZP_01828268.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS69]
gi|147758562|gb|EDK65560.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS69]
Length = 145
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|418120837|ref|ZP_12757783.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353793664|gb|EHD74023.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
Length = 461
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
Length = 420
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G +PT +Q +ALP LF RD + AQTG+GKTL +LL ++ + Q +I+
Sbjct: 18 LKKQGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPALQQIHPDQHQEQVLIL 77
Query: 145 VPTRELGMQVTKVARVLAA 163
PTREL Q+T VA LAA
Sbjct: 78 APTRELAKQITAVATDLAA 96
>gi|423402905|ref|ZP_17380078.1| hypothetical protein ICW_03303 [Bacillus cereus BAG2X1-2]
gi|423476466|ref|ZP_17453181.1| hypothetical protein IEO_01924 [Bacillus cereus BAG6X1-1]
gi|401650038|gb|EJS67613.1| hypothetical protein ICW_03303 [Bacillus cereus BAG2X1-2]
gi|402433362|gb|EJV65414.1| hypothetical protein IEO_01924 [Bacillus cereus BAG6X1-1]
Length = 446
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|289168235|ref|YP_003446504.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
gi|288907802|emb|CBJ22642.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFKAPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|421238395|ref|ZP_15694964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395602982|gb|EJG63123.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|373465646|ref|ZP_09557101.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
kisonensis F0435]
gi|371759896|gb|EHO48603.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
kisonensis F0435]
Length = 453
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
+ H+ +L + + G+ PT +Q + +P + RD + + TGSGKT +LL IF+
Sbjct: 4 FSEFHLKPFILAALKDIGFSKPTPVQEKLIPKIMQGRDVVGQSATGSGKTHAFLLPIFNQ 63
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKS 191
+N VQAVI P+REL Q+ A+ L AK SD KP + A + G R ++
Sbjct: 64 LNPDVHEVQAVITTPSRELAYQIIDAAKQL-AKHSD-----KPISTGAYVGGTDKLRQEN 117
Query: 192 WLK 194
LK
Sbjct: 118 KLK 120
>gi|418104807|ref|ZP_12741867.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|418136781|ref|ZP_12773624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418177782|ref|ZP_12814366.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353779241|gb|EHD59707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|353844556|gb|EHE24599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353902709|gb|EHE78237.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118477863|ref|YP_895014.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
gi|376266386|ref|YP_005119098.1| ATP-dependent RNA helicase [Bacillus cereus F837/76]
gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|364512186|gb|AEW55585.1| ATP-dependent RNA helicase [Bacillus cereus F837/76]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|418184527|ref|ZP_12821075.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA47283]
gi|421212760|ref|ZP_15669722.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|353852125|gb|EHE32115.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA47283]
gi|395581167|gb|EJG41640.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|417695917|ref|ZP_12345097.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|418107139|ref|ZP_12744179.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|421247015|ref|ZP_15703502.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|332203914|gb|EGJ17981.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|353780616|gb|EHD61073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|395614651|gb|EJG74669.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|440784135|ref|ZP_20961556.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
pasteurianum DSM 525]
gi|440219171|gb|ELP58386.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
pasteurianum DSM 525]
Length = 379
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ + +P+ ++D I +QTG+GKTL YLL IF +N ++ +Q +I+VPT EL
Sbjct: 24 IPTNIQTKVIPLALENKDIIAKSQTGTGKTLAYLLPIFHRINFEKKEMQCIILVPTHELA 83
Query: 152 MQVTKVARVLAAKPS 166
MQ+ ++L+ S
Sbjct: 84 MQINSEIKLLSQNYS 98
>gi|417405652|gb|JAA49530.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 1033
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 372 IKSWVQCGISMKILNSLKKHGYEKPTPIQSQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 431
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 432 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 464
>gi|423617263|ref|ZP_17593097.1| hypothetical protein IIO_02589 [Bacillus cereus VD115]
gi|401255938|gb|EJR62153.1| hypothetical protein IIO_02589 [Bacillus cereus VD115]
Length = 442
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423413828|ref|ZP_17390948.1| hypothetical protein IE1_03132 [Bacillus cereus BAG3O-2]
gi|423430388|ref|ZP_17407392.1| hypothetical protein IE7_02204 [Bacillus cereus BAG4O-1]
gi|401099746|gb|EJQ07747.1| hypothetical protein IE1_03132 [Bacillus cereus BAG3O-2]
gi|401119315|gb|EJQ27130.1| hypothetical protein IE7_02204 [Bacillus cereus BAG4O-1]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|422344580|ref|ZP_16425505.1| hypothetical protein HMPREF9432_01565 [Selenomonas noxia F0398]
gi|355376649|gb|EHG23891.1| hypothetical protein HMPREF9432_01565 [Selenomonas noxia F0398]
Length = 367
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
VPE + + + G +PT+IQ +P ++ + I A TG+GKTL YLL + + ++
Sbjct: 9 VPEVLAAALAKRGITVPTEIQTALIPAAYAGENLIGEAPTGTGKTLAYLLPLLTRIDPSL 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+VQA+I+ PT EL MQ+T VAR A P V AL+ G ++R LK
Sbjct: 69 RSVQALILAPTHELAMQITDVARETAQAA------ELPIRVQALIGGANIKRQIEALK 120
>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 451
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
Length = 458
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|30262474|ref|NP_844851.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47527766|ref|YP_019115.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|49185310|ref|YP_028562.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|386736224|ref|YP_006209405.1| ATP-dependent RNA helicase [Bacillus anthracis str. H9401]
gi|421636278|ref|ZP_16076877.1| ATP-dependent RNA helicase [Bacillus anthracis str. BF1]
gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|384386076|gb|AFH83737.1| ATP-dependent RNA helicase [Bacillus anthracis str. H9401]
gi|403396806|gb|EJY94043.1| ATP-dependent RNA helicase [Bacillus anthracis str. BF1]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|419457132|ref|ZP_13997078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379532618|gb|EHY97843.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
Length = 396
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
Length = 616
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
T+ ++PE+VL + E G+ PT IQ +A+P L RD + AQTG+GKT + L
Sbjct: 3 TMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLP 62
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ + ++ +AVQA+++ PTREL MQ AA
Sbjct: 63 MLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAA 98
>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
Length = 453
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 6/82 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR ++E GY++PT IQR+A+PV+ RD + AQTG+GKT + L + ++N
Sbjct: 12 ILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQILNENAQPIK 71
Query: 136 -RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 72 GRRPVRALILTPTRELAAQIGE 93
>gi|440292099|gb|ELP85341.1| ATP-dependent RNA helicase HAS1, putative [Entamoeba invadens IP1]
Length = 566
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 19/132 (14%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
LT R+ + + V +DE G+ T IQ P+L + RD + A+TGSGKTL YL+
Sbjct: 103 LTERKFSALKLSDEVQDALDEAGFTFMTTIQERTAPLLLTGRDVLAKARTGSGKTLAYLV 162
Query: 127 LIFSLVNA----QRSAVQAVIVVPTRELGMQVTKV------------ARVLAAKPSDTD- 169
+ L+N R+ A+I+ PTREL +Q+ +V A ++ P D
Sbjct: 163 PVLDLLNKIKFTSRNGTGAIIISPTRELALQIYEVLEKLMQNSERSKALLIGGNPKKKDE 222
Query: 170 --LEHKPCTVMA 179
LE+ C V+A
Sbjct: 223 EVLENGACVVVA 234
>gi|423624444|ref|ZP_17600222.1| hypothetical protein IK3_03042 [Bacillus cereus VD148]
gi|401256513|gb|EJR62722.1| hypothetical protein IK3_03042 [Bacillus cereus VD148]
Length = 458
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|422883521|ref|ZP_16929970.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK49]
gi|332362965|gb|EGJ40754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK49]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
gi|423379736|ref|ZP_17357020.1| hypothetical protein IC9_03089 [Bacillus cereus BAG1O-2]
gi|423442772|ref|ZP_17419678.1| hypothetical protein IEA_03102 [Bacillus cereus BAG4X2-1]
gi|423447032|ref|ZP_17423911.1| hypothetical protein IEC_01640 [Bacillus cereus BAG5O-1]
gi|423465872|ref|ZP_17442640.1| hypothetical protein IEK_03059 [Bacillus cereus BAG6O-1]
gi|423535187|ref|ZP_17511605.1| hypothetical protein IGI_03019 [Bacillus cereus HuB2-9]
gi|423539565|ref|ZP_17515956.1| hypothetical protein IGK_01657 [Bacillus cereus HuB4-10]
gi|423545787|ref|ZP_17522145.1| hypothetical protein IGO_02222 [Bacillus cereus HuB5-5]
gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
gi|401131028|gb|EJQ38682.1| hypothetical protein IEC_01640 [Bacillus cereus BAG5O-1]
gi|401175559|gb|EJQ82761.1| hypothetical protein IGK_01657 [Bacillus cereus HuB4-10]
gi|401182047|gb|EJQ89190.1| hypothetical protein IGO_02222 [Bacillus cereus HuB5-5]
gi|401632212|gb|EJS50000.1| hypothetical protein IC9_03089 [Bacillus cereus BAG1O-2]
gi|402414180|gb|EJV46516.1| hypothetical protein IEA_03102 [Bacillus cereus BAG4X2-1]
gi|402416794|gb|EJV49108.1| hypothetical protein IEK_03059 [Bacillus cereus BAG6O-1]
gi|402462303|gb|EJV94011.1| hypothetical protein IGI_03019 [Bacillus cereus HuB2-9]
Length = 450
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
LT R+L + E VL+ +D+ G+ P+ IQ +A+P L +D I AQTG+GKT
Sbjct: 3 ETKLTFRDLA---LSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAA 59
Query: 124 Y-LLLIFSLVNAQRSAVQAVIVVPTRELGMQV----TKVAR 159
+ + ++ LV QR AVQA+++ PTREL +QV TK+ R
Sbjct: 60 FGVPIVERLVPGQR-AVQALVLTPTRELAIQVAEEITKIGR 99
>gi|423529710|ref|ZP_17506155.1| hypothetical protein IGE_03262 [Bacillus cereus HuB1-1]
gi|402448192|gb|EJV80040.1| hypothetical protein IGE_03262 [Bacillus cereus HuB1-1]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|398816597|ref|ZP_10575244.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398032284|gb|EJL25629.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 580
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147
G PT IQ +A+PV+ +D I AQTG+GKTL ++L I + Q + VQA+I+ PT
Sbjct: 25 NGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLPILEKTDPQATHVQALILTPT 84
Query: 148 RELGMQVTKVARVLAAKPSD 167
REL +Q+T + L K D
Sbjct: 85 RELALQITAEVKKLTEKLED 104
>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423383903|ref|ZP_17361159.1| hypothetical protein ICE_01649 [Bacillus cereus BAG1X1-2]
gi|401641163|gb|EJS58884.1| hypothetical protein ICE_01649 [Bacillus cereus BAG1X1-2]
Length = 454
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|401681079|ref|ZP_10812985.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
gi|400187873|gb|EJO22065.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
Length = 447
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|418157058|ref|ZP_12793774.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA16833]
gi|418164098|ref|ZP_12800772.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA17371]
gi|418223030|ref|ZP_12849675.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|419444371|ref|ZP_13984386.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|353823506|gb|EHE03680.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA16833]
gi|353832425|gb|EHE12543.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
GA17371]
gi|353880302|gb|EHE60118.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|379572064|gb|EHZ37021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
Length = 367
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
Length = 458
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|125623300|ref|YP_001031783.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853629|ref|YP_006355873.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492108|emb|CAL97037.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070051|gb|ADJ59451.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 446
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 54/81 (66%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + ++ + PT++Q++ +P++ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQNINPELDE 69
Query: 139 VQAVIVVPTRELGMQVTKVAR 159
VQAVI P+REL Q+ K A+
Sbjct: 70 VQAVITAPSRELATQIYKAAQ 90
>gi|422856815|ref|ZP_16903469.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1]
gi|422864324|ref|ZP_16910949.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1058]
gi|422880022|ref|ZP_16926486.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1059]
gi|422930373|ref|ZP_16963312.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 29667]
gi|422930964|ref|ZP_16963895.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK340]
gi|327459301|gb|EGF05647.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1]
gi|327490518|gb|EGF22299.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1058]
gi|332364598|gb|EGJ42367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1059]
gi|339613867|gb|EGQ18589.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 29667]
gi|339620940|gb|EGQ25508.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK340]
Length = 447
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
gi|260623074|gb|EEX45945.1| DEAD/DEAH box helicase [Bacteroides finegoldii DSM 17565]
Length = 374
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 61/95 (64%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T R+L ++ E +L+ ++E GY+ PT IQ +A+P + RD + AQTG+GKT ++ +
Sbjct: 1 MTFRDL---NIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVNA-----QRSAVQAVIVVPTRELGMQVTK 156
I + A +R ++A+I+ PTREL MQ+++
Sbjct: 58 PIIQHLQANKETDKRQGIKALILTPTRELAMQISE 92
>gi|407704916|ref|YP_006828501.1| hypothetical protein MC28_1680 [Bacillus thuringiensis MC28]
gi|407382601|gb|AFU13102.1| ATP-dependent RNA helicase [Bacillus thuringiensis MC28]
Length = 450
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|422878109|ref|ZP_16924579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1056]
gi|332358037|gb|EGJ35870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1056]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|422861295|ref|ZP_16907936.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK330]
gi|327467234|gb|EGF12738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK330]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|422850278|ref|ZP_16896954.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK115]
gi|325688758|gb|EGD30767.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK115]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423627497|ref|ZP_17603246.1| hypothetical protein IK5_00349 [Bacillus cereus VD154]
gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401271716|gb|EJR77723.1| hypothetical protein IK5_00349 [Bacillus cereus VD154]
Length = 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
Length = 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|125718667|ref|YP_001035800.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK36]
gi|125498584|gb|ABN45250.1| ATP-dependent RNA helicase, putative [Streptococcus sanguinis SK36]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|392962181|ref|ZP_10327628.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421055965|ref|ZP_15518892.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421068803|ref|ZP_15530040.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421073056|ref|ZP_15534160.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392438381|gb|EIW16204.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392439079|gb|EIW16825.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392445483|gb|EIW22815.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392452939|gb|EIW29844.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G PT+IQ +A+P + S +D + +QTG+GKTL ++L I + + VQA+I+ P
Sbjct: 20 ENGITKPTEIQAQAIPAIMSGKDVVGQSQTGTGKTLAFILPILEKIEISKPIVQALIITP 79
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q+T+ LA
Sbjct: 80 TRELALQITREVAKLA 95
>gi|116511271|ref|YP_808487.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
SK11]
gi|116106925|gb|ABJ72065.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
cremoris SK11]
Length = 446
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 54/81 (66%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + ++ + PT++Q++ +P++ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQNINPELDE 69
Query: 139 VQAVIVVPTRELGMQVTKVAR 159
VQAVI P+REL Q+ K A+
Sbjct: 70 VQAVITAPSRELATQIYKAAQ 90
>gi|444517226|gb|ELV11421.1| putative ATP-dependent RNA helicase DDX46 [Tupaia chinensis]
Length = 1078
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 418 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 477
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 478 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 510
>gi|426350064|ref|XP_004042602.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like, partial
[Gorilla gorilla gorilla]
Length = 882
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 222 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 281
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 282 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 314
>gi|73971268|ref|XP_531911.2| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Canis lupus
familiaris]
gi|194219918|ref|XP_001918233.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Equus
caballus]
gi|426229554|ref|XP_004008855.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Ovis aries]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
Length = 1027
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|85540944|sp|Q569Z5.2|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
Full=DEAD box protein 46
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|75061689|sp|Q5R6D8.1|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
Full=DEAD box protein 46
gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
Length = 1058
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 397 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 456
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 457 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 489
>gi|39104531|dbj|BAC98030.2| mKIAA0801 protein [Mus musculus]
Length = 1044
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 388 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 447
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 448 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 480
>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
gi|81890303|sp|Q62780.1|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
Full=DEAD box protein 46; AltName: Full=Helicase of
117.4 kDa
gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|410948190|ref|XP_003980824.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Felis catus]
Length = 1030
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 370 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 429
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 430 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 462
>gi|402872563|ref|XP_003900179.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Papio anubis]
Length = 984
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|395817878|ref|XP_003804109.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX46 [Otolemur garnettii]
Length = 941
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 333 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 392
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 393 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 425
>gi|395736192|ref|XP_003780666.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX46 [Pongo abelii]
Length = 1014
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 351 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 410
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 411 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 443
>gi|390459218|ref|XP_002744211.2| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Callithrix
jacchus]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|355683297|gb|AER97080.1| DEAD box polypeptide 46 [Mustela putorius furo]
Length = 842
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 182 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 241
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 242 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 274
>gi|354471891|ref|XP_003498174.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Cricetulus griseus]
Length = 1029
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 369 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 428
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 429 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 461
>gi|348575057|ref|XP_003473306.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
[Cavia porcellus]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|348575055|ref|XP_003473305.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
[Cavia porcellus]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|344264944|ref|XP_003404549.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Loxodonta
africana]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
leucogenys]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Ailuropoda melanoleuca]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|386781262|ref|NP_001248109.1| probable ATP-dependent RNA helicase DDX46 [Macaca mulatta]
gi|380818496|gb|AFE81121.1| putative ATP-dependent RNA helicase DDX46 [Macaca mulatta]
gi|383423315|gb|AFH34871.1| putative ATP-dependent RNA helicase DDX46 [Macaca mulatta]
gi|384950636|gb|AFI38923.1| putative ATP-dependent RNA helicase DDX46 [Macaca mulatta]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
cuniculus]
Length = 1030
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 370 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 429
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 430 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 462
>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
Length = 454
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
Length = 794
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ + E + +N +T++ E +G P++V+ + + G+
Sbjct: 108 YKPCESVLARTQGETETFLS---SNEITIKGNEVPTPSIEFEEGGFPDYVMNEIRKQGFT 164
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + +P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 165 KPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 224
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 225 TRELAQQIQQVA 236
>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
Length = 940
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
Length = 963
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 303 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 362
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 363 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 395
>gi|119895518|ref|XP_586902.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Bos taurus]
gi|297477226|ref|XP_002689237.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Bos taurus]
gi|296485325|tpg|DAA27440.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
sapiens]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
sapiens]
gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
sapiens]
Length = 883
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
troglodytes]
gi|397518269|ref|XP_003829316.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan paniscus]
gi|116241326|sp|Q7L014.2|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
Full=DEAD box protein 46; AltName: Full=PRP5 homolog
gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
sapiens]
Length = 1031
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
gi|410212896|gb|JAA03667.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gi|410212898|gb|JAA03668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gi|410212900|gb|JAA03669.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gi|410256700|gb|JAA16317.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gi|410256702|gb|JAA16318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gi|410300506|gb|JAA28853.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gi|410350251|gb|JAA41729.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|421224617|ref|ZP_15681362.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|395590948|gb|EJG51247.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 390
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +VAR ++A
Sbjct: 71 QAVITAPSRELATQIYQVARQISA 94
>gi|422863903|ref|ZP_16910532.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK408]
gi|327472726|gb|EGF18153.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK408]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEAESVQAVITAPSRELAAQIYQAARQLAS 94
>gi|423396915|ref|ZP_17374116.1| hypothetical protein ICU_02609 [Bacillus cereus BAG2X1-1]
gi|401651491|gb|EJS69056.1| hypothetical protein ICU_02609 [Bacillus cereus BAG2X1-1]
Length = 454
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|385837453|ref|YP_005875083.1| ATP-dependent RNA helicase YqfR [Lactococcus lactis subsp. cremoris
A76]
gi|358748681|gb|AEU39660.1| ATP-dependent RNA helicase YqfR [Lactococcus lactis subsp. cremoris
A76]
Length = 446
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 54/81 (66%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + ++ + PT++Q++ +P++ S RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQNINPELDE 69
Query: 139 VQAVIVVPTRELGMQVTKVAR 159
VQAVI P+REL Q+ K A+
Sbjct: 70 VQAVITAPSRELATQIYKAAQ 90
>gi|422872119|ref|ZP_16918612.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1087]
gi|328945053|gb|EGG39209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1087]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
Length = 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
Length = 458
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 477
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 5/92 (5%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS-LVNA 134
+P+ VL+ ++ETG+ T IQ +ALP+ + +D AQTG+GKT T+L+ IF+ L+N
Sbjct: 7 QLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIFTRLLNQ 66
Query: 135 QRSAVQ----AVIVVPTRELGMQVTKVARVLA 162
Q++ + A+I+ PTREL +Q+ K A+ L
Sbjct: 67 QKTGAEHHPRALILAPTRELVVQIEKDAQTLG 98
>gi|417850162|ref|ZP_12496077.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus mitis
SK1080]
gi|339455495|gb|EGP68102.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus mitis
SK1080]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALQELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
Length = 403
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ + L + + G+ PT++Q + +P++ +D I AQTG+GKT + + I VN +
Sbjct: 17 QISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIPIVETVNTK 76
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+QA+++VPTREL +QVTK + + K +A+ G +R +LK
Sbjct: 77 SRKIQALVLVPTRELAIQVTKEIKDIG--------REKRIFALAVYGGKSIRHQIDFLK 127
>gi|433546496|ref|ZP_20502815.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182213|gb|ELK39795.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 540
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147
G PT IQ +A+PVL + +D I AQTG+GKTL +LL I V+ + + VQ +I+ PT
Sbjct: 25 NGIAEPTPIQEKAIPVLMTGKDAISQAQTGTGKTLAFLLPILEKVDPETNDVQTLILTPT 84
Query: 148 RELGMQVTKVARVLAA 163
REL +Q+T + L A
Sbjct: 85 RELALQITAEVQKLTA 100
>gi|335049615|ref|ZP_08542602.1| putative DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp.
UPII 199-6]
gi|333762350|gb|EGL39848.1| putative DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp.
UPII 199-6]
Length = 420
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G +PT +Q +ALP LF RD + AQTG+GKTL +LL ++ + Q +I+
Sbjct: 18 LKKRGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPALQQIHPDQHQEQVLIL 77
Query: 145 VPTRELGMQVTKVARVLAA 163
PTREL Q+T VA LAA
Sbjct: 78 APTRELAKQITAVATDLAA 96
>gi|432117756|gb|ELK37909.1| Putative ATP-dependent RNA helicase DDX46 [Myotis davidii]
Length = 1191
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 608 IKSWVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 667
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 668 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 700
>gi|351708460|gb|EHB11379.1| Putative ATP-dependent RNA helicase DDX46 [Heterocephalus glaber]
Length = 1255
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 642 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 701
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 702 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 734
>gi|407718005|ref|YP_006795410.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc carnosum JB16]
gi|407241761|gb|AFT81411.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc carnosum JB16]
Length = 455
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ PT +Q + +P + RD + +QTGSGKT T+L+ IF+ + + + VQAVI P+R
Sbjct: 25 GFTTPTPVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPIFNQLESDQHYVQAVITTPSR 84
Query: 149 ELGMQVTKVARVLAAK 164
EL Q+TK ++ A K
Sbjct: 85 ELAAQITKATKLFAEK 100
>gi|403382424|ref|ZP_10924481.1| ATP-dependent RNA helicase [Paenibacillus sp. JC66]
Length = 442
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G V PT+IQ +P L D I AQTG+GKTL ++L I + + VQA+IV PTR
Sbjct: 2 GIVQPTEIQERCIPPLLHGHDVIGRAQTGTGKTLAFVLPILQRLRPDQGEVQALIVAPTR 61
Query: 149 ELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
EL +Q+T + + A D C V+A+ G + + LK
Sbjct: 62 ELALQITAEIKKVTADSED-------CRVLAVYGGQDVEKQMRQLK 100
>gi|399046383|ref|ZP_10738806.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398055540|gb|EJL47607.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 492
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134
G PE +++ + + Y PT IQ EA+P++ +D I AQTG+GKT ++L I + ++A
Sbjct: 9 GFRPE-LMQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILNRLDA 67
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+ +QA+I+ PTREL +Q+ K L +H V++L G + R S LK
Sbjct: 68 GKRDIQALILTPTRELSIQIAKEVEKLG--------KHLDVNVLSLHGGTDIDRQLSKLK 119
>gi|422850983|ref|ZP_16897653.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK150]
gi|325695201|gb|EGD37102.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK150]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 ILDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 546
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 60 AGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSG 119
A + T R+L ++ E +L+ +DE G+ PT IQR+ LP F RD I ++TGSG
Sbjct: 132 ANEADERTTFRDL---NICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSG 188
Query: 120 KTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
KT +++ I + +R + A+++ PTREL +Q+ + + L +
Sbjct: 189 KTACFIIPILQELRQKRQSFFALVISPTRELCIQIAQHFQALGS 232
>gi|431892646|gb|ELK03079.1| Putative ATP-dependent RNA helicase DDX46 [Pteropus alecto]
Length = 1580
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 699 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 758
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 759 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 791
>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
Length = 463
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G PT IQ +A+P + RD I AQTG+GKT ++L I ++ +QA+IV PTR
Sbjct: 21 GIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPILEKLDPDAVHIQALIVTPTR 80
Query: 149 ELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
EL +Q+T + L A D DLE V+A+ G + + + LK
Sbjct: 81 ELALQITDEVQKLTA--GDDDLE-----VLAVYGGQDVDKQLNKLK 119
>gi|427739247|ref|YP_007058791.1| DNA/RNA helicase [Rivularia sp. PCC 7116]
gi|427374288|gb|AFY58244.1| DNA/RNA helicase, superfamily II [Rivularia sp. PCC 7116]
Length = 505
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
SLT +L + L ++++ G+ PT+IQ++A+P L S RD + +QTG+GKT +
Sbjct: 2 SLTFEDLG---ISAQRLAQLEKLGFTTPTNIQQQAIPQLLSGRDVVGQSQTGTGKTAAFS 58
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L I ++ + VQAV++ PTREL +QV
Sbjct: 59 LPILERIDPTQKVVQAVVLAPTRELAIQV 87
>gi|422826990|ref|ZP_16875169.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK678]
gi|324994094|gb|EGC26008.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK678]
Length = 447
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 ILDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|357059412|ref|ZP_09120254.1| hypothetical protein HMPREF9334_01971 [Selenomonas infelix ATCC
43532]
gi|355371489|gb|EHG18833.1| hypothetical protein HMPREF9334_01971 [Selenomonas infelix ATCC
43532]
Length = 423
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G +PT +Q +A+P + + RD I AQTG+GKT +LL + + Q QA+++
Sbjct: 17 LKKQGITVPTPVQEQAIPPVRAGRDVIAQAQTGTGKTFAFLLPLLEKIKPQGEVAQALVI 76
Query: 145 VPTRELGMQVTKVARVLAAK 164
PTREL +Q+ +VA L A+
Sbjct: 77 APTRELAIQIARVAEPLGAE 96
>gi|434403468|ref|YP_007146353.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
gi|428257723|gb|AFZ23673.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
Length = 520
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+L+ +EL + + + ++++ G+ PT+IQ +A+P+L + RD + +QTG+GKT +
Sbjct: 2 NLSFQELG---ISQERVEQLEKIGFTEPTNIQVQAIPILLAGRDVVGQSQTGTGKTAAFS 58
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L I ++ + AVQA+++ PTREL MQV
Sbjct: 59 LPILERLDINQRAVQALVLTPTRELAMQV 87
>gi|407474780|ref|YP_006789180.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051288|gb|AFS79333.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 446
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
++ REL + +++ +++ G + PT IQ +++P + + +D I AQTG+GKTL ++
Sbjct: 2 TINFRELS---IDKNLENALEKEGIINPTPIQIKSIPEILNGKDIIAQAQTGTGKTLAFI 58
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
L I ++ + +QA+IV PTREL +Q+T A+ L+
Sbjct: 59 LPIIEKLDTSKPYIQALIVTPTRELAIQITDEAKKLS 95
>gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP]
gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis]
Length = 480
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Query: 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSL 131
Q ++ +L+ +DE G+ PT IQ LP F +D I AQTG+GKT + + I S
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185
++ + +Q +++ PTREL Q+ +L C+ +AL+ GG+
Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGK---------YTCSKIALILGGV 107
>gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
gi|143456709|sp|Q5K5B6.2|RH57_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 57
gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa Japonica Group]
gi|125601315|gb|EAZ40891.1| hypothetical protein OsJ_25369 [Oryza sativa Japonica Group]
Length = 540
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPT 147
G+ PT IQR+A+P+L S R+C A TGSGKTL +L ++ + + V+AVI+ PT
Sbjct: 165 GFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPT 224
Query: 148 RELGMQVTKVARVLA 162
REL Q T+ + LA
Sbjct: 225 RELAAQTTRECKKLA 239
>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
Length = 446
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPKSSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|125559398|gb|EAZ04934.1| hypothetical protein OsI_27114 [Oryza sativa Indica Group]
Length = 540
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPT 147
G+ PT IQR+A+P+L S R+C A TGSGKTL +L ++ + + V+AVI+ PT
Sbjct: 165 GFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPT 224
Query: 148 RELGMQVTKVARVLA 162
REL Q T+ + LA
Sbjct: 225 RELAAQTTRECKKLA 239
>gi|421834383|ref|ZP_16269441.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum CFSAN001627]
gi|409744221|gb|EKN42870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum CFSAN001627]
Length = 421
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ +A+P+ ++D I ++TG+GKTL YLL IF + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + ++ S+++++ K MA++ ++R LK
Sbjct: 85 MQINNEIKNIS---SNSNMDVKS---MAIIGEANIKRQIEKLK 121
>gi|336320811|ref|YP_004600779.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336104392|gb|AEI12211.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 605
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
LT EL +P+ + R + G+V P+ IQ A+P L S RD + AQTG+GKT +
Sbjct: 19 ELTFDELG---LPDALHRAVASLGFVTPSAIQARAIPALLSGRDIVGVAQTGTGKTAAFG 75
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
L + + V+ + AVQA+++ PTREL MQV +
Sbjct: 76 LPLLAAVDPEVRAVQAIVLTPTRELAMQVAE 106
>gi|433544706|ref|ZP_20501082.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432183978|gb|ELK41503.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 530
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134
G PE +++ + + Y PT IQ EA+P++ +D I AQTG+GKT ++L I + ++A
Sbjct: 9 GFRPE-LMQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILNRLDA 67
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+ +QA+I+ PTREL +Q+ K L +H V++L G + R S LK
Sbjct: 68 GKRDIQALILTPTRELSIQIAKEVEKLG--------KHLDVNVLSLHGGTDIDRQLSKLK 119
>gi|344240362|gb|EGV96465.1| putative ATP-dependent RNA helicase DDX46 [Cricetulus griseus]
Length = 1172
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 512 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 571
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 572 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 604
>gi|270293066|ref|ZP_06199277.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M143]
gi|270279045|gb|EFA24891.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M143]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIEKALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETSDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR + A
Sbjct: 71 QAVITAPSRELATQIYQAARQIVA 94
>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 421
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ +A+P+ ++D I ++TG+GKTL YLL IF + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + ++ S+++++ K MA++ ++R LK
Sbjct: 85 MQINNEIKNIS---SNSNMDVKS---MAIIGEANIKRQIEKLK 121
>gi|387817973|ref|YP_005678318.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
Length = 421
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ +A+P+ ++D I ++TG+GKTL YLL IF + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + ++ S+++++ K MA++ ++R LK
Sbjct: 85 MQINNEIKNIS---SNSNMDVKS---MAIIGEANIKRQIEKLK 121
>gi|345327882|ref|XP_001510706.2| PREDICTED: probable ATP-dependent RNA helicase DDX46, partial
[Ornithorhynchus anatinus]
Length = 973
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 313 IKSWVQCGISMKILNSLRKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 372
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 373 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 405
>gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 575
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147
G PT IQ +A+PV+ +D I AQTG+GKTL ++L I + Q + VQA+I+ PT
Sbjct: 23 NGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLPILENADPQATHVQALILTPT 82
Query: 148 RELGMQVTKVARVLAAKPSD 167
REL +Q+T + L K D
Sbjct: 83 RELALQITAEVKKLTEKLED 102
>gi|410615743|ref|ZP_11326756.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
gi|410164699|dbj|GAC40645.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
Length = 585
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKT 121
T + +T R+L ++PE +L+ +D+ GY PT IQ E +P++ D + AQTG+GKT
Sbjct: 3 TTTSEITFRDL---NLPEELLQALDKVGYEKPTPIQAECIPLIIGGHDLLGTAQTGTGKT 59
Query: 122 LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ L + + ++ + Q +++ PTREL +QV + +V A+
Sbjct: 60 AAFALPMLANIDPDDKSTQLLVLTPTRELAIQVAEAFQVYAS 101
>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 414
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E++ A GN E H+ +LR + E GYV P+ IQ +A+P+ + +D + A+
Sbjct: 32 EDVTATEGN------EFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGKDIMARAK 85
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
G+GKT ++L+ + + +Q +I+VPTREL +Q ++V + L
Sbjct: 86 NGTGKTASFLIPALEKTDPTKDYIQVLILVPTRELALQTSQVCKELG 132
>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217959967|ref|YP_002338523.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
gi|375284481|ref|YP_005104920.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|423352280|ref|ZP_17329907.1| hypothetical protein IAU_00356 [Bacillus cereus IS075]
gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
gi|358353008|dbj|BAL18180.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|401091974|gb|EJQ00110.1| hypothetical protein IAU_00356 [Bacillus cereus IS075]
Length = 454
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 368
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V + +++ + ++G PT IQ + P++ + +D I AQTG+GKTL +LL +F ++
Sbjct: 8 VSDDLIQVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLFENISPDI 67
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
A QA+I+ PTREL +Q+T+ A LA
Sbjct: 68 EATQALIITPTRELALQITEEANKLA 93
>gi|365903643|ref|ZP_09441466.1| superfamily II DNA/RNA helicase [Lactobacillus malefermentans KCTC
3548]
Length = 451
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
++E G+ PT +Q+ +PV+ S + + +QTGSGKT T+LL IF ++ + VQ++I
Sbjct: 16 IEELGFTEPTAVQKRLIPVIKSGKSVVGKSQTGSGKTHTFLLPIFDKIDPELDEVQSLIT 75
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWL 193
P+REL Q+ + A+ LA+ KP V+ + G R +S L
Sbjct: 76 TPSRELAYQIYEAAKQLASH------SEKPIRVVNYVGGTDKARQQSKL 118
>gi|417924184|ref|ZP_12567636.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
gi|342836238|gb|EGU70454.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR ++A
Sbjct: 71 QAVITAPSRELATQIYQAARQISA 94
>gi|342163432|ref|YP_004768071.1| ATP-dependent RNA helicase [Streptococcus pseudopneumoniae IS7493]
gi|341933314|gb|AEL10211.1| ATP-dependent RNA helicase [Streptococcus pseudopneumoniae IS7493]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR ++A
Sbjct: 71 QAVITAPSRELATQIYQAARQISA 94
>gi|423568610|ref|ZP_17544857.1| hypothetical protein II7_01833 [Bacillus cereus MSX-A12]
gi|401210898|gb|EJR17649.1| hypothetical protein II7_01833 [Bacillus cereus MSX-A12]
Length = 454
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|335356979|ref|ZP_08548849.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 443
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ PT++Q+ +PV+ + + +QTGSGKT T+LL IF+ ++ AVQAVI P
Sbjct: 20 EIGFQAPTEVQKRLIPVIKKGKSVVGQSQTGSGKTHTFLLPIFNAIDPAVHAVQAVITTP 79
Query: 147 TRELGMQVTKVARVLAAKPSDTDL 170
+REL Q+ A+ L AK S+T++
Sbjct: 80 SRELAYQIYGAAKQL-AKHSETEI 102
>gi|421766027|ref|ZP_16202806.1| ATP-dependent RNA helicase YqfR [Lactococcus garvieae DCC43]
gi|407625588|gb|EKF52288.1| ATP-dependent RNA helicase YqfR [Lactococcus garvieae DCC43]
Length = 446
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + + E++ ++ +V PT +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFNFKEYINETLEAIKFVSPTPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+N VQAVI P+REL Q+ A+ A
Sbjct: 62 QLNTDLDEVQAVITAPSRELATQIYHAAQEFA 93
>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 474
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E ++ T S L Q ++P +L R+DE GY T +Q +LPV+ ++ D ++ A
Sbjct: 7 ENISDNTSETSPELLHFNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRAD 66
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
TGSGKT + L + + + A+ + QA+++ PTREL QV R LA
Sbjct: 67 TGSGKTTAFALTLLAKLEAKSFSPQALVLCPTRELAHQVADEVRKLA 113
>gi|383938460|ref|ZP_09991671.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|383714669|gb|EID70664.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 79 EHVLRR-MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS 137
+H +R ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++
Sbjct: 9 KHYIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASD 68
Query: 138 AVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
+VQAVI P+REL Q+ + AR ++ S +D+E
Sbjct: 69 SVQAVITAPSRELATQIYQAARQIS---SHSDVE 99
>gi|42781571|ref|NP_978818.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 72 QALIVAPTRELALQITNEIKKMLVQRDDINV 102
>gi|422847362|ref|ZP_16894045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK72]
gi|325686939|gb|EGD28963.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK72]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADTVQAVITAPSRELAAQIYQAARQLAS 94
>gi|449460509|ref|XP_004147988.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47,
mitochondrial-like [Cucumis sativus]
gi|449519613|ref|XP_004166829.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47,
mitochondrial-like [Cucumis sativus]
Length = 555
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 22/128 (17%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN------- 133
++ R++ G+ +PTDIQ ++P + D ++ + TGSGKTL Y+L I S +
Sbjct: 122 LIERLESEGFTVPTDIQSASIPTILKKHDVVIQSYTGSGKTLAYVLPILSEIGPFKNTIS 181
Query: 134 ------AQRSAVQAVIVVPTRELGMQVTK-VARVLAAKPSDTDLEHKPCTVMALLDGGML 186
++ ++AVIV P+RELGMQ+ + V ++L P++ + V L+ G
Sbjct: 182 NYNDEPGKKKEIEAVIVAPSRELGMQIVREVEKILG--PANRKV------VQQLVGGANR 233
Query: 187 RRHKSWLK 194
R + LK
Sbjct: 234 SRQEEALK 241
>gi|281211648|gb|EFA85810.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1269
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E++ A GN E H+ +LR + E GYV P+ IQ +A+P+ + +D + A+
Sbjct: 34 EDVTATEGN------EFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALTGKDIMARAK 87
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
G+GKT ++L+ + + +Q +I+VPTREL +Q ++V + L
Sbjct: 88 NGTGKTASFLIPALEKTDPTKDYIQVLILVPTRELALQTSQVCKELG 134
>gi|307708913|ref|ZP_07645373.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307620249|gb|EFN99365.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLVGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR +AA
Sbjct: 71 QAVITAPSRELATQIYQAARQIAA 94
>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
Length = 451
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|323350323|ref|ZP_08085988.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis VMC66]
gi|322123508|gb|EFX95179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis VMC66]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADTVQAVITAPSRELAAQIYQAARQLAS 94
>gi|322516110|ref|ZP_08069045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
vestibularis ATCC 49124]
gi|322125405|gb|EFX96755.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
vestibularis ATCC 49124]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + +DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + V
Sbjct: 11 YIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPKSGDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
Q VI P+REL Q+ + + + AK S+T++
Sbjct: 71 QVVITAPSRELATQIYQATKQI-AKHSETEI 100
>gi|421075784|ref|ZP_15536790.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392526099|gb|EIW49219.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G PT+IQ +A+P + S +D + +QTG+GKTL ++L I + + VQA+I+ P
Sbjct: 20 ENGITKPTEIQVQAIPAIMSGKDVVGQSQTGTGKTLAFILPILEKIEISKPIVQALIITP 79
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q+T+ LA
Sbjct: 80 TRELALQITREVAKLA 95
>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 454
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|423372414|ref|ZP_17349754.1| hypothetical protein IC5_01470 [Bacillus cereus AND1407]
gi|401098851|gb|EJQ06861.1| hypothetical protein IC5_01470 [Bacillus cereus AND1407]
Length = 454
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|422820607|ref|ZP_16868800.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK353]
gi|324991749|gb|EGC23681.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK353]
Length = 447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADTVQAVITAPSRELAAQIYQAARQLAS 94
>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
Length = 454
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINV 105
>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
1251]
gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 457
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIF 129
+E ++ + +L ++E GY +DIQ ++LP + +D I A+TGSGKT + + +
Sbjct: 5 KEFSNLNLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAKTGSGKTAAFGIGLL 64
Query: 130 SLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ ++ VQA+I+ PTREL QV + RVLA
Sbjct: 65 HKLQVKKFRVQALILCPTRELSDQVARELRVLA 97
>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 472
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 84 RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVI 143
+++ +P+ IQ EA+P L RD +QTGSGKTL YLL + + A+QA+I
Sbjct: 18 KLEANNIKVPSAIQAEAIPTLLEGRDVSARSQTGSGKTLAYLLPMLQQLKPSSGAIQAII 77
Query: 144 VVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
+ PT+EL MQ+ +VA A E V L+ G ++R LK+
Sbjct: 78 LAPTQELAMQIVRVAEGYA--------EPLGLRVQQLIGGAAMKRQIEKLKL 121
>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
Length = 451
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 72 QALIVAPTRELALQITTEIKKMLVQREDINV 102
>gi|297814273|ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
lyrata]
gi|297320857|gb|EFH51279.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
lyrata]
Length = 507
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 36 PVSISWKP-LRAVLSSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYV 91
P S WK L+ + E++ A GN + REL G + E G+
Sbjct: 104 PNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMG---------IYEKGFE 154
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
P+ IQ E++P+ + RD + A+ G+GKT + + + ++ + +QAVI+VPTREL
Sbjct: 155 RPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELA 214
Query: 152 MQVTKVARVLA 162
+Q ++V + L
Sbjct: 215 LQTSQVCKELG 225
>gi|218132479|ref|ZP_03461283.1| hypothetical protein BACPEC_00338 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992589|gb|EEC58591.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 381
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152
PTDIQ++ + +RD I +QTGSGKTL YL+ +F ++ + VQAVI VPT+ELG+
Sbjct: 28 PTDIQQQLFAPVLDNRDVIGCSQTGSGKTLAYLIPLFCKIDVADTHVQAVIAVPTQELGI 87
Query: 153 QVTKVARVLAAKPS 166
QV + ++LA S
Sbjct: 88 QVLRQIQLLAGNAS 101
>gi|22328183|ref|NP_191975.2| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
gi|30678703|ref|NP_849535.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
gi|75330763|sp|Q8RXK6.1|RH8_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 8
gi|19423939|gb|AAL87312.1| putative RNA helicase [Arabidopsis thaliana]
gi|21280839|gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana]
gi|332656515|gb|AEE81915.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
gi|332656516|gb|AEE81916.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
Length = 505
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 36 PVSISWKP-LRAVLSSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYV 91
P S WK L+ + E++ A GN + REL G + E G+
Sbjct: 102 PNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMG---------IYEKGFE 152
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
P+ IQ E++P+ + RD + A+ G+GKT + + + ++ + +QAVI+VPTREL
Sbjct: 153 RPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELA 212
Query: 152 MQVTKVARVLA 162
+Q ++V + L
Sbjct: 213 LQTSQVCKELG 223
>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
Length = 665
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++L +D G+V PT IQ A+P+L RD + AQTG+GKT + L + + +N +
Sbjct: 15 ENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK 74
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL +QV
Sbjct: 75 PQAIIMAPTRELAIQV 90
>gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana]
Length = 505
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 36 PVSISWKP-LRAVLSSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYV 91
P S WK L+ + E++ A GN + REL G + E G+
Sbjct: 102 PNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMG---------IYEKGFE 152
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
P+ IQ E++P+ + RD + A+ G+GKT + + + ++ + +QAVI+VPTREL
Sbjct: 153 RPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELA 212
Query: 152 MQVTKVARVLA 162
+Q ++V + L
Sbjct: 213 LQTSQVCKELG 223
>gi|443896844|dbj|GAC74187.1| U5 snRNP-like RNA helicase subunit [Pseudozyma antarctica T-34]
Length = 698
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 58 LAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTG 117
++A GN LR + +P +L ++E GY P+ IQR+A+P+ +RD I A+TG
Sbjct: 263 ISARGGNIPRPLRSWRESSIPPSILATIEEIGYTEPSPIQRQAIPIGLQNRDLIGIAETG 322
Query: 118 SGKTLTYLLLIFSLV--------NAQRSAVQAVIVVPTRELGMQV 154
SGKT ++L+ + + + N + QA+I+VPTREL Q+
Sbjct: 323 SGKTASFLIPMLAYISHLPKLDENTKALGPQALILVPTRELAQQI 367
>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 374
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 63/95 (66%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ + +L+ ++E GY PT IQ++A+PV S +D + AQTG+GKT ++ +
Sbjct: 1 MTFKEL---NIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVNA-----QRSAVQAVIVVPTRELGMQVTK 156
I L+ A +R V+A+I+ PTREL +Q+++
Sbjct: 58 PIIQLLQADPIITKRKGVKALILTPTRELALQISE 92
>gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana]
Length = 545
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 18/114 (15%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C+G++ LR + E G+ PT IQR+A+P+L S R+C
Sbjct: 128 SGNNIPPPLKSFAELSSRYGCEGYI----LRNLAELGFKEPTPIQRQAIPILLSGRECFA 183
Query: 113 HAQTGSGKTLTY---LLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKT + +L+ ++N + S ++AVI+ P REL Q + + L
Sbjct: 184 CAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIRAVILSPARELAAQTAREGKKL 237
>gi|421061112|ref|ZP_15523489.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
gi|392451871|gb|EIW28841.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
Length = 344
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G PT+IQ +A+P + S +D + +QTG+GKTL ++L I + + VQA+I+ P
Sbjct: 20 ENGITKPTEIQAQAIPAIMSGKDVVGQSQTGTGKTLAFILPILEKIEISKPIVQALIITP 79
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q+T+ LA
Sbjct: 80 TRELALQITREVAKLA 95
>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
[Helicobacter felis ATCC 49179]
Length = 469
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L+ + E G+V P+ IQ +A+PV+ RD I AQTG+GKT + L I + RS V+
Sbjct: 29 ILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHNLKNDRS-VE 87
Query: 141 AVIVVPTRELGMQVT 155
A+I+ PTREL MQ++
Sbjct: 88 ALIITPTRELAMQIS 102
>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
Length = 646
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++L +D G+V PT IQ A+P+L RD + AQTG+GKT + L + + +N +
Sbjct: 15 ENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK 74
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL +QV
Sbjct: 75 PQAIIMAPTRELAIQV 90
>gi|428208465|ref|YP_007092818.1| DEAD/DEAH box helicase [Chroococcidiopsis thermalis PCC 7203]
gi|428010386|gb|AFY88949.1| DEAD/DEAH box helicase domain protein [Chroococcidiopsis thermalis
PCC 7203]
Length = 482
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++++++ G+ PT+IQ +A+P L + RD + +QTG+GKT + L I ++ Q A
Sbjct: 12 ESRIQQLEKIGFTTPTNIQVQAIPQLLAGRDVVGKSQTGTGKTAAFSLPILEQIDHQSKA 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRH 189
VQA+I+ PTREL +QV + + ++ ++A+ G + R
Sbjct: 72 VQALILTPTRELAVQVCQAMKSF--------VDRNESRILAIYGGQSIERQ 114
>gi|374580313|ref|ZP_09653407.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374416395|gb|EHQ88830.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 386
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152
PT IQ +A+P + + RD + ++TG+GKTL YLL +F ++ QR QA+I+ PT EL +
Sbjct: 25 PTAIQEQAIPFILAGRDVLGQSETGTGKTLAYLLPLFQKIDTQRKETQAMILTPTHELAI 84
Query: 153 QVTKVARVLA 162
Q+ + +LA
Sbjct: 85 QIQREMEILA 94
>gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 504
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 47 VLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFS 106
V S+ + +EEL A + T EL +PE VLR +D G+ P IQ LPV +
Sbjct: 42 VRPSTTMPVEELWAAPASGLPTFAELG---LPEAVLRTLDAEGFTAPFPIQAATLPVTLA 98
Query: 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV---QAVIVVPTRELGMQV 154
RD + QTGSGKTL + L + S + R+ + +++VPTREL QV
Sbjct: 99 GRDLLGRGQTGSGKTLAFGLALLSRLAGGRAVARRPRGLVLVPTRELAQQV 149
>gi|118572555|sp|Q0UR48.1|HAS1_PHANO RecName: Full=ATP-dependent RNA helicase HAS1
Length = 610
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 19/132 (14%)
Query: 56 EELAAGTGNNSLTLRELCQG---------------HVPEHVLRRMDETGYVLPTDIQREA 100
+E AAG+G N+L + +L G ++ E + + G+ T+IQR+A
Sbjct: 102 DEDAAGSGANALAVADLPSGTSIPTVDDPTRFDELNLSERTMEAIKTMGFESMTEIQRKA 161
Query: 101 LPVLFSSRDCILHAQTGSGKTLTYLL----LIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
+P L S +D + A+TGSGKTL +L+ ++ S+ R+ ++V PTREL +Q+
Sbjct: 162 IPPLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSSMRFKPRNGTGVIVVSPTRELALQIFG 221
Query: 157 VARVLAAKPSDT 168
VAR L K S T
Sbjct: 222 VARELMEKHSQT 233
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +LR ++ G+ PT IQR+A+P++ RD I AQTG+GKT + L I + +
Sbjct: 11 EPILRAIEAVGFEEPTPIQRQAIPLMLDGRDVIAQAQTGTGKTAAFALPIIQRLKPDQKG 70
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+++ PTREL +QV +
Sbjct: 71 PQALVLAPTRELAVQVAQ 88
>gi|384180400|ref|YP_005566162.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 436
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|428226482|ref|YP_007110579.1| DEAD/DEAH box helicase [Geitlerinema sp. PCC 7407]
gi|427986383|gb|AFY67527.1| DEAD/DEAH box helicase domain protein [Geitlerinema sp. PCC 7407]
Length = 474
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAV 142
R ++ G+ PT IQ EA+P L S RD + AQTG+GKT + L + ++ +++AVQA+
Sbjct: 16 RHLESLGFEAPTPIQVEAIPHLLSGRDVVGQAQTGTGKTAAFSLPMLEAIDLKKNAVQAL 75
Query: 143 IVVPTRELGMQVTKVARVLAAK 164
++ PTREL +QV + R L +
Sbjct: 76 VLTPTRELAVQVCQSIRDLRGR 97
>gi|410631430|ref|ZP_11342105.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
gi|410148876|dbj|GAC18972.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
Length = 585
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKT 121
T + +T R+L ++PE +L+ +D+ GY PT IQ E +P++ D + AQTG+GKT
Sbjct: 3 TTTSEITFRDL---NLPEELLQALDKVGYEKPTPIQAECIPLILDGHDVLGTAQTGTGKT 59
Query: 122 LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ L + + ++ Q +++ PTREL +QV + +V A+
Sbjct: 60 AAFALPMLANIDPDDKNTQLLVLAPTRELAIQVAEAFQVYAS 101
>gi|383190938|ref|YP_005201066.1| DNA/RNA helicase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589196|gb|AEX52926.1| DNA/RNA helicase, superfamily II [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 469
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY---LLLIFSLVNAQ- 135
+LR ++E GY PT IQR+A+PV+ RD + AQTG+GKT + LL + S NAQ
Sbjct: 11 EILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNMLSHTNAQF 70
Query: 136 --RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 71 KGRRPVRALILTPTRELAAQIGE 93
>gi|406985211|gb|EKE06046.1| hypothetical protein ACD_19C00104G0001, partial [uncultured
bacterium]
Length = 141
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILH--AQTGSGKTLTY 124
+ + E + E++++ +D G+ PT+IQ +A+P+L +++ H AQTG+GKTL +
Sbjct: 3 VNMNEFKNFGLSENIMKALDSVGFTTPTEIQAKAIPMLLANKKQDFHGQAQTGTGKTLAF 62
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
+ + +++ + AVQA+I+ PTREL +Q+ +
Sbjct: 63 GIPLIEKIDSSKKAVQALIIAPTRELVLQIVE 94
>gi|402573181|ref|YP_006622524.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254378|gb|AFQ44653.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 537
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L+ + E G+ P+ IQ+EA+PV D I AQTG+GKT + + I VNA+ AVQ
Sbjct: 18 LLQALSEMGFEEPSPIQKEAIPVALDGVDLIGQAQTGTGKTAAFGIPITEKVNAKFQAVQ 77
Query: 141 AVIVVPTRELGMQVTK 156
A+IV PTREL +QV++
Sbjct: 78 ALIVTPTRELAIQVSE 93
>gi|417004416|ref|ZP_11943149.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|341578215|gb|EGS28612.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
Length = 447
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ VQ VI
Sbjct: 16 LDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDVQVVIT 75
Query: 145 VPTRELGMQVTKVARVLA 162
P+REL Q+ + + +A
Sbjct: 76 APSRELATQIYQATKQIA 93
>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
Length = 446
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|339302269|ref|ZP_08651330.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
agalactiae ATCC 13813]
gi|319744243|gb|EFV96608.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
agalactiae ATCC 13813]
Length = 419
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE +V PTD+Q + +PV+ S RD + ++TGSGKT T+LL IF ++ VQ VI
Sbjct: 16 LDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDVQVVIT 75
Query: 145 VPTRELGMQVTKVARVLA 162
P+REL Q+ + + +A
Sbjct: 76 APSRELATQIYQATKQIA 93
>gi|422824717|ref|ZP_16872902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK405]
gi|324991997|gb|EGC23919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK405]
Length = 447
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + ++ T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALKDLNFLEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|440684340|ref|YP_007159135.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428681459|gb|AFZ60225.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 503
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G+ PT+IQ +A+P L + RD + +QTG+GKT + L I ++ + AVQA+++
Sbjct: 18 LEKMGFTTPTNIQAQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILEQLDVNKRAVQALVL 77
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
PTREL MQV ++ D L VMA+ G + R S LK
Sbjct: 78 TPTRELAMQVHD---AISQFMGDDGLR-----VMAIYGGQSIDRQMSQLK 119
>gi|384258953|ref|YP_005402887.1| ATP-dependent RNA helicase RhlE [Rahnella aquatilis HX2]
gi|380754929|gb|AFE59320.1| ATP-dependent RNA helicase RhlE [Rahnella aquatilis HX2]
Length = 469
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY---LLLIFSLVNAQ- 135
+LR ++E GY PT IQR+A+PV+ RD + AQTG+GKT + LL + S NAQ
Sbjct: 11 EILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNMLSHTNAQF 70
Query: 136 --RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 71 KGRRPVRALILTPTRELAAQIGE 93
>gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase [Rahnella sp. Y9602]
gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
Length = 470
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY---LLLIFSLVNAQ- 135
+LR ++E GY PT IQR+A+PV+ RD + AQTG+GKT + LL + S NAQ
Sbjct: 11 EILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNMLSHTNAQF 70
Query: 136 --RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 71 KGRRPVRALILTPTRELAAQIGE 93
>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
Length = 481
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++R + GY PT+IQ E +PV +D + +QTGSGKT Y + I LV+ +
Sbjct: 13 EEIVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICELVDWNENK 72
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+I+ PTREL +QVT+
Sbjct: 73 PQALILTPTRELALQVTE 90
>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
Length = 822
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ + + A NN +T++ E +G P++V+ + + G+
Sbjct: 116 YKPCDSVLARTQGETDTFLA---NNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFA 172
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 173 KPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 232
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 233 TRELAQQIQQVA 244
>gi|423636821|ref|ZP_17612474.1| hypothetical protein IK7_03230 [Bacillus cereus VD156]
gi|401274649|gb|EJR80621.1| hypothetical protein IK7_03230 [Bacillus cereus VD156]
Length = 458
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
QA+IV PTREL +Q+T + + + D ++
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINV 105
>gi|334127360|ref|ZP_08501287.1| DEAD/DEAH box family ATP-dependent RNA helicase [Centipeda
periodontii DSM 2778]
gi|333389713|gb|EGK60872.1| DEAD/DEAH box family ATP-dependent RNA helicase [Centipeda
periodontii DSM 2778]
Length = 378
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
T+R VPE+ + +++ G PT+IQ +P + + I A TG+GKTL YLL
Sbjct: 11 TMRTFSSLGVPENYIAALEKRGIAAPTEIQTAFIPAARAGENLIGEAPTGTGKTLAYLLP 70
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
I V+ Q +I+ PT EL MQ+ VAR LA P V AL+ G ++
Sbjct: 71 ILERVDPAVRTTQVLILAPTHELAMQIATVARELAQAAG------LPIGVQALIGGANIK 124
Query: 188 RHKSWLK 194
R LK
Sbjct: 125 RQIEALK 131
>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
Length = 425
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ G PT +Q +A+P + + RD I AQTG+GKTL++LL + + Q + QA+++
Sbjct: 17 LQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPLLEKIKPQGTVAQALVI 76
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL +Q+ +VA L
Sbjct: 77 APTRELAIQIARVAEPLG 94
>gi|229918069|ref|YP_002886715.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229469498|gb|ACQ71270.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 388
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 86 DETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145
D G+ P +Q+EA P+L +D + A TG+GKTL YLL ++ +Q V+V
Sbjct: 13 DRMGFNEPMPVQKEAFPLLLDGKDVTIEAPTGTGKTLAYLLPAIEKIDPSNDRIQVVVVA 72
Query: 146 PTRELGMQVTKVARVLAAK 164
PTREL MQ+ +VA+ K
Sbjct: 73 PTRELVMQIQQVAQRFTEK 91
>gi|423605778|ref|ZP_17581671.1| hypothetical protein IIK_02359 [Bacillus cereus VD102]
gi|401243133|gb|EJR49504.1| hypothetical protein IIK_02359 [Bacillus cereus VD102]
Length = 454
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
Length = 451
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|417948598|ref|ZP_12591742.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809545|gb|EGU44662.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 638
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++L +D G+V PT IQ A+P+L RD + AQTG+GKT + L + + +N +
Sbjct: 15 ENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK 74
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL +QV
Sbjct: 75 PQAIIMAPTRELAIQV 90
>gi|380493888|emb|CCF33553.1| ATP-dependent RNA helicase DHH1 [Colletotrichum higginsianum]
Length = 531
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +QA+I+VP
Sbjct: 64 EAGFERPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQALILVP 123
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 124 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTGLR 156
>gi|429849688|gb|ELA25044.1| ATP dependent RNA helicase [Colletotrichum gloeosporioides Nara
gc5]
Length = 514
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +QA+I+VP
Sbjct: 64 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQALILVP 123
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 124 TRELAMQTSQVCKTLG 139
>gi|310800761|gb|EFQ35654.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 530
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +QA+I+VP
Sbjct: 64 EAGFERPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQALILVP 123
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 124 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTGLR 156
>gi|157111113|ref|XP_001651396.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108878542|gb|EAT42767.1| AAEL005744-PA [Aedes aegypti]
Length = 603
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 63 GNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTL 122
GN E +G V ++ L+ + E G+ T+IQ +A+P L RD I A+TGSGKTL
Sbjct: 106 GNQEF---ETLRGKVSDNTLKAIAEMGFTKMTEIQAKAIPPLLEGRDLIGSAKTGSGKTL 162
Query: 123 TYLLLIFSLVN----AQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+L+ + L+N R+ +I+ PTREL MQ+ V + L A
Sbjct: 163 AFLIPVVELINKLQFKPRNGTGVIIISPTRELAMQIFGVLKELMA 207
>gi|427406207|ref|ZP_18896412.1| hypothetical protein HMPREF9161_00772 [Selenomonas sp. F0473]
gi|425709048|gb|EKU72087.1| hypothetical protein HMPREF9161_00772 [Selenomonas sp. F0473]
Length = 367
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
VPE + +++ G PT IQ +P + + I A TG+GKTL YLL F V+ Q
Sbjct: 9 VPETLAAAIEKRGITAPTAIQEAFIPPAHAGENLIGAAPTGTGKTLAYLLPAFMRVDPQL 68
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
AVQ +I+ PT EL +Q+ VAR LA P V AL+ G ++R LK
Sbjct: 69 RAVQTLILAPTHELAVQIAGVARDLA------QAAEFPVAVQALIGGANIKRQAEALK 120
>gi|313682309|ref|YP_004060047.1| dead/deah box helicase domain-containing protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155169|gb|ADR33847.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
16994]
Length = 450
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ L+R++ T T IQ +ALPV+ +DCI A TGSGKTL + L + +N +
Sbjct: 14 KEALKRLEFTQM---TSIQSQALPVILQKKDCIAQAATGSGKTLAFGLGVLERINPKSFG 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAK 164
Q++I+ PTREL QV KV R LA++
Sbjct: 71 TQSLILCPTRELAEQVAKVIRSLASE 96
>gi|387814726|ref|YP_005430213.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339743|emb|CCG95790.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 457
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+D+ GY PT +Q EA+P+ + +D I AQTGSGKT + + I ++ +R VQ++++
Sbjct: 17 LDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIETIDPRRFHVQSLVL 76
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL QV K R LA
Sbjct: 77 CPTRELADQVAKALRELA 94
>gi|145347521|ref|XP_001418212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578441|gb|ABO96505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 419
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Query: 56 EELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
E++ A GN + REL G + E G+ P+ IQ E++P+ + RD +
Sbjct: 37 EDVTATKGNEFEDYFLKRELLMG---------IFEKGFERPSPIQEESIPIALTGRDILA 87
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT + + I V+ ++ +QAVI+VPTREL +Q ++VA+ L
Sbjct: 88 RAKNGTGKTAAFTIPILEKVDTSKNIIQAVILVPTRELALQTSQVAKELG 137
>gi|392305434|emb|CCI71797.1| DEAD-box ATP dependent DNA helicase [Paenibacillus polymyxa M1]
Length = 481
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++R ++ GY PT+IQ E +PV +D + +QTGSGKT Y + + LV+ +
Sbjct: 13 EEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLCELVDWNENK 72
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+I+ PTREL +QVT+
Sbjct: 73 PQALILTPTRELALQVTE 90
>gi|422344498|ref|ZP_16425423.1| hypothetical protein HMPREF9432_01483 [Selenomonas noxia F0398]
gi|355376567|gb|EHG23809.1| hypothetical protein HMPREF9432_01483 [Selenomonas noxia F0398]
Length = 425
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ G PT +Q +A+P + + RD I AQTG+GKTL +LL + + Q + QA+++
Sbjct: 17 LQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAFLLPLLEKIKPQGTVAQALVI 76
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
PTREL +Q+ +VA L +P D + + G + R K L+
Sbjct: 77 APTRELAIQIARVAEPL-GEPLD-------IGTIVIYGGADIERQKEKLR 118
>gi|310644788|ref|YP_003949547.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 481
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++R ++ GY PT+IQ E +PV +D + +QTGSGKT Y + + LV+ +
Sbjct: 13 EEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLCELVDWNENK 72
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+I+ PTREL +QVT+
Sbjct: 73 PQALILTPTRELALQVTE 90
>gi|340966801|gb|EGS22308.1| ATP-dependent RNA helicase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 554
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L+ + E GY P+ IQ E++P+ + RD + A+ G+GKT +++ +N + S +Q
Sbjct: 53 LLKGIFEAGYEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQ 112
Query: 141 AVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
+I+VPTREL MQ ++V ++L +H VM G LR
Sbjct: 113 CLILVPTRELAMQTSQVCKILG--------KHLGVNVMVTTGGTGLR 151
>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
E43]
gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
E43]
Length = 367
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E+++ +++ G PT IQ E++P + S +D I A+TG+GKTL +LL IF ++
Sbjct: 8 INENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIFQNISPDT 67
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL 161
+ Q +I+ PTREL +Q+T+ + L
Sbjct: 68 NGTQVLILSPTRELAIQITEETKKL 92
>gi|320582556|gb|EFW96773.1| ATP-dependent RNA helicase [Ogataea parapolymorpha DL-1]
Length = 568
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL----LIFSL 131
H+ E ++ + + G+ T++Q +P L + +D + A+TGSGKTL +L+ L++SL
Sbjct: 118 HLSEPTMKGIQDMGFTKMTEVQARTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSL 177
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKS 191
R+ A+++ PTREL +Q+ VAR L A S T + +L GG RR ++
Sbjct: 178 KFKPRNGAGAIVITPTRELALQIFGVARELMAHHSQT---------LGILIGGANRRQEA 228
>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 367
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E+++ +++ G PT IQ E++P + S +D I A+TG+GKTL +LL IF ++
Sbjct: 8 INENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIFQNISPDT 67
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL 161
+ Q +I+ PTREL +Q+T+ + L
Sbjct: 68 NGTQVLILSPTRELAIQITEETKKL 92
>gi|168490848|ref|ZP_02714991.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC0288-04]
gi|183574625|gb|EDT95153.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
CDC0288-04]
Length = 445
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 55/84 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ +V
Sbjct: 11 YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDSV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ +V+R ++A
Sbjct: 71 QAVITAPSRELATQIYQVSRQISA 94
>gi|374321245|ref|YP_005074374.1| ATP-dependent RNA helicase dbpA [Paenibacillus terrae HPL-003]
gi|357200254|gb|AET58151.1| ATP-dependent RNA helicase dbpA [Paenibacillus terrae HPL-003]
Length = 481
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++R +D GY PT++Q + +PV +D + +QTGSGKT +Y + + LV+ +
Sbjct: 13 EEIVRALDSLGYETPTEVQTKVIPVALEKKDLVAKSQTGSGKTASYGIPLCELVDWNENK 72
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+I+ PTREL +QVT+
Sbjct: 73 PQALILTPTRELALQVTE 90
>gi|405979826|ref|ZP_11038167.1| hypothetical protein HMPREF9241_00890 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391201|gb|EJZ86265.1| hypothetical protein HMPREF9241_00890 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 753
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P +L + + G+V PT IQ +A+P L D + AQTG+GKT + L + ++V+A
Sbjct: 72 LPNEILDAVTQMGFVTPTPIQEKAIPSLLELNDVVGIAQTGTGKTAAFGLPMLAIVDADE 131
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
VQ++++ PTREL MQ + AA+ D+
Sbjct: 132 KLVQSLVLAPTRELAMQSAQAIEDFAARTRGLDV 165
>gi|392426452|ref|YP_006467446.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391356415|gb|AFM42114.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 537
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ +++ + E G+ P+ IQ++A+PV D I AQTG+GKT + + I VNA+ A
Sbjct: 16 KQIVQGLSEMGFEEPSPIQQQAIPVALEDTDIIGQAQTGTGKTAAFGIPIAEKVNAKFQA 75
Query: 139 VQAVIVVPTRELGMQV----TKVARVLAAKP 165
VQA+IV PTREL +QV +K+ + KP
Sbjct: 76 VQALIVTPTRELAIQVAQEISKIGKYKHVKP 106
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ +L+ +D GY PT IQ++A+P+L RD I AQTG+GKT + L
Sbjct: 1 MTFKEL---NLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFAL 57
Query: 127 LIF-SLVNAQRSAVQAVIVVPTRELGMQVTK 156
I +L + +R ++A+I+ PTREL +Q+ +
Sbjct: 58 PILQNLASERRKGIKALILTPTRELAIQIQE 88
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+L+ + E G+ PT IQ EA+PVL + D I AQTG+GKT + + I +N + AV
Sbjct: 15 RILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILEKLNPRYRAV 74
Query: 140 QAVIVVPTRELGMQVTK 156
QA+++ PTREL +QV +
Sbjct: 75 QALVITPTRELAIQVAE 91
>gi|292670388|ref|ZP_06603814.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647980|gb|EFF65952.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 374
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
VPE + + + G +PT+IQ +P ++ + I A TG+GKTL YLL + + ++
Sbjct: 16 VPEVLAVALAKRGITVPTEIQTALIPAAYAGENLIGEAPTGTGKTLAYLLPLLTRIDPSL 75
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
++QA+I+VPT EL MQ+ VAR A P V AL+ G ++R LK
Sbjct: 76 RSIQALILVPTHELAMQIADVARETAQAA------ELPIRVQALIGGANIKRQIEALK 127
>gi|449440077|ref|XP_004137811.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 57-like [Cucumis
sativus]
Length = 616
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSA 138
++L + E G+ PT IQR+A+PVL S R+C A TGSGKTL ++ ++ L + +
Sbjct: 148 YLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMRLKDPSKEG 207
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
++AVI+ PTREL Q + + LA
Sbjct: 208 IRAVILCPTRELASQTIRECKKLA 231
>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
Length = 818
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ +A E +N +T++ E +G P++V+ + + G+
Sbjct: 121 YKPCDSVLARTAGETETFLT---SNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFA 177
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 178 KPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 237
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 238 TRELAQQIQQVA 249
>gi|429962434|gb|ELA41978.1| hypothetical protein VICG_00995 [Vittaforma corneae ATCC 50505]
Length = 543
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
GY P+ +Q +++P + + D ++ A+ GSGK+L++L+ I +N + + +QA+IV PTR
Sbjct: 188 GYNFPSPVQYQSIPNILAGNDVLVRAKNGSGKSLSFLIPIIEKINIESNNLQAIIVAPTR 247
Query: 149 ELGMQVTKVARVLAAKPSDTDLEHKP 174
EL +Q+ + AR L D +++ P
Sbjct: 248 ELALQIARFARSLCK---DLNIKSAP 270
>gi|357121693|ref|XP_003562552.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 57-like
[Brachypodium distachyon]
Length = 539
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 54 SIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILH 113
S EEL + G +S +++ + + GY PT IQR+A+ +L S R+C
Sbjct: 142 SFEELVSRYGCDS-------------YLVGNLSKLGYQEPTPIQRQAISILLSGRECFAC 188
Query: 114 AQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A TGSGKTL +LL ++ + + V+AVI+ PTREL Q T+ + LA
Sbjct: 189 APTGSGKTLAFLLPMLMKIKPGSKGGVKAVILCPTRELAAQTTRECKKLA 238
>gi|423648357|ref|ZP_17623927.1| hypothetical protein IKA_02144 [Bacillus cereus VD169]
gi|401284762|gb|EJR90623.1| hypothetical protein IKA_02144 [Bacillus cereus VD169]
Length = 454
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|402557327|ref|YP_006598598.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|401798537|gb|AFQ12396.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 450
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|328767833|gb|EGF77881.1| hypothetical protein BATDEDRAFT_20569 [Batrachochytrium
dendrobatidis JAM81]
Length = 422
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 52/76 (68%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ + RD + A+ G+GKT +++ + +N Q+S +QA+++VP
Sbjct: 64 EAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPVLEKINIQKSHIQALLLVP 123
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V ++L
Sbjct: 124 TRELALQTSQVCKLLG 139
>gi|300855475|ref|YP_003780459.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 369
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+ +EL + E+++ + G PT IQ+E++ + +D I AQTG+GKTL +LL
Sbjct: 1 MDFKEL---ELSENIINELKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLL 57
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
IF ++ ++ QA+IV PTREL +Q+T+ A
Sbjct: 58 PIFENISPNINSTQALIVTPTRELAIQITEEA 89
>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
Length = 455
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|170050080|ref|XP_001859201.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167871660|gb|EDS35043.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 600
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL---- 126
E +G V ++ L+ + E G+ T+IQ +A+P L + RD I A+TGSGKTL +L+
Sbjct: 108 ESLKGKVSDNTLKAITEMGFTKMTEIQAKAIPPLLAGRDLIGSAKTGSGKTLAFLIPAVE 167
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
LI+ L R+ +++ PTREL MQ+ V + L+A
Sbjct: 168 LIYKLQFKPRNGTGVLVISPTRELAMQIFGVLKELSA 204
>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
Length = 824
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ +A E +N +T++ E +G P++V+ + + G+
Sbjct: 122 YKPCDSVLARTAGETETFLT---SNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFA 178
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 179 KPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 238
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 239 TRELAQQIQQVA 250
>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
Length = 725
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 41 WKPLRAVLSSSAVSIEELAAGT-----GNNS-LTLRELCQGHVPEHVLRRMDETGYVLPT 94
+ P VL+ + I + AG GNN+ ++ + + P++V+ + + G+ PT
Sbjct: 74 YDPHHNVLNRTPDEISKYYAGKEITVKGNNTPFPVQAFEESNFPDYVMNEIKKQGFAEPT 133
Query: 95 DIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA-----VIVVPTRE 149
IQ + P+ S RD + AQTGSGKTL Y+L +N Q + +I+ PTRE
Sbjct: 134 AIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAIVHINNQPRLSRGDGPIVLILAPTRE 193
Query: 150 LGMQVTKVAR 159
L Q+ VAR
Sbjct: 194 LAQQIQTVAR 203
>gi|452837825|gb|EME39766.1| hypothetical protein DOTSEDRAFT_74612 [Dothistroma septosporum
NZE10]
Length = 518
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 38 SISWKP-LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDI 96
S WK L+A + E++ A G L E ++ +L + E G+ P+ I
Sbjct: 19 SGDWKQGLKAPVKDGRQQTEDVTATKG---LDFEEF---YLKRELLMGIYEAGFEKPSPI 72
Query: 97 QREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
Q E +PV S RD + A+ G+GKT +++ +N + +QA+++VPTREL +Q ++
Sbjct: 73 QEETIPVALSGRDVLARAKNGTGKTAAFVIPTLERINPKSDKIQALLLVPTRELALQTSQ 132
Query: 157 VARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
V + L +H VM G LR
Sbjct: 133 VCKTLG--------KHLGVNVMVTTGGTGLR 155
>gi|449516225|ref|XP_004165148.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 57-like, partial
[Cucumis sativus]
Length = 441
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 14/111 (12%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C ++ L + E G+ PT IQR+A+PVL S R+C
Sbjct: 151 SGNNVPSPLQNFGELSTRYDCDSYL----LHNLVELGFKEPTPIQRQAIPVLLSGRECFA 206
Query: 113 HAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A TGSGKTL ++ ++ L + + ++AVI+ PTREL Q + + LA
Sbjct: 207 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTIRECKKLA 257
>gi|195995533|ref|XP_002107635.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
gi|190588411|gb|EDV28433.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
Length = 418
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++PV S +D I A+ G+GKT YL+ + L + ++ VQ++++VP
Sbjct: 68 EKGFEKPSPIQEESIPVAVSGKDIIARAKNGTGKTGAYLIPLLQLTDPDKNVVQSIVLVP 127
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q +++ + L +H VM G LR
Sbjct: 128 TRELALQTSQICKELG--------KHMQINVMVTTGGTNLR 160
>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 369
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G PT IQ E++ ++ + +D I A TG+GKTL +LL IF +N + VQA+I+
Sbjct: 16 LNKNGISAPTPIQEESIEIIKNGKDIIAEAGTGTGKTLAFLLPIFEQINPKSKDVQALIL 75
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
PTREL +Q+T A L E K V+A G
Sbjct: 76 TPTRELALQITNEADKLN--------EDKKINVLACYGG 106
>gi|384186458|ref|YP_005572354.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 455
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
Length = 433
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ + +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQV-TKVARVLAAKPS 166
QA+IV PTREL +Q+ T++ ++L K
Sbjct: 72 QALIVAPTRELALQITTEIEKMLVHKED 99
>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
Length = 649
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + VL + ++GYV+PT IQ+ ++PV+ RD + AQTGSGKT +LL I
Sbjct: 234 IKSFDQARLRGSVLENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPI 293
Query: 129 FSLV-----NAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
S + + + QAVIV PTREL +Q+ AR A
Sbjct: 294 LSNILDESHDLEIGKPQAVIVSPTRELAIQIFNEARKFA 332
>gi|156043018|ref|XP_001588066.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154695693|gb|EDN95431.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 535
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E+G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S VQ +I+VP
Sbjct: 64 ESGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKSSKVQCLILVP 123
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++V + L +H VM G LR
Sbjct: 124 TRELALQTSQVCKTLG--------QHLGVNVMVTTGGTTLR 156
>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 530
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL+ +D G+ P+ IQ +A+PV+ D I AQTG+GKTL Y + SL+
Sbjct: 13 EDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISLMEHGPHQ 72
Query: 139 VQAVIVVPTRELGMQVT 155
VQA+I+VPTREL +QV
Sbjct: 73 VQALILVPTRELAIQVN 89
>gi|119582643|gb|EAW62239.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_b [Homo
sapiens]
Length = 471
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +F + QRS
Sbjct: 334 KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 393
Query: 140 Q-----AVIVVPTRELGMQVTKVARVLA 162
+ AVI+ PTREL +Q+TK + +
Sbjct: 394 EGEGPIAVIMTPTRELALQITKECKKFS 421
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 49 SSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSR 108
+++AV+ + AG N +T +L + E VLR + E GY P+ IQ +P L +
Sbjct: 10 TTTAVTATDEQAGNENEPVTFLDLG---IDERVLRALAEVGYENPSPIQAATIPPLLAGN 66
Query: 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
D + AQTG+GKT + + + S ++ + QA+++ PTREL +QV++
Sbjct: 67 DVVGLAQTGTGKTAAFAVPVLSKIDGESRTPQALVLAPTRELALQVSE 114
>gi|427729699|ref|YP_007075936.1| DNA/RNA helicase [Nostoc sp. PCC 7524]
gi|427365618|gb|AFY48339.1| DNA/RNA helicase, superfamily II [Nostoc sp. PCC 7524]
Length = 510
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 48/70 (68%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G+ PT+IQ +A+P L S RD + +QTG+GKT + L I ++ Q+ VQA+++
Sbjct: 18 LEKIGFTTPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERIDVQQRGVQALVL 77
Query: 145 VPTRELGMQV 154
PTREL +QV
Sbjct: 78 TPTRELAIQV 87
>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 657
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
+NS+ R L + E +LR ++ GY PT IQ +P+L RD + AQTG+GKT
Sbjct: 24 DNSVNFRSL---ELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAA 80
Query: 124 YLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ L + S ++ + QA+++ PTREL +QV + A
Sbjct: 81 FALPVLSNIDLSATDPQALVLAPTRELAIQVAEAFHTYA 119
>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 529
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ + +L+ + E GY +PT IQ +A+P L++ D I AQTG+GKT + + + +N Q
Sbjct: 11 NIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPMLEKINPQ 70
Query: 136 RSAVQAVIVVPTRELGMQVTKVAR 159
+ Q +I+ PTREL MQV R
Sbjct: 71 QKTPQVLILAPTRELSMQVADEIR 94
>gi|423587115|ref|ZP_17563202.1| hypothetical protein IIE_02527 [Bacillus cereus VD045]
gi|423642524|ref|ZP_17618142.1| hypothetical protein IK9_02469 [Bacillus cereus VD166]
gi|401229005|gb|EJR35524.1| hypothetical protein IIE_02527 [Bacillus cereus VD045]
gi|401276579|gb|EJR82530.1| hypothetical protein IK9_02469 [Bacillus cereus VD166]
Length = 458
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|421491378|ref|ZP_15938744.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
gi|400371480|gb|EJP24439.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
Length = 447
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T++Q + +PV+ + RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+N +VQ VI P+REL Q+ + AR +AA
Sbjct: 62 KLNEDADSVQVVITAPSRELARQIYQAARQIAA 94
>gi|312376077|gb|EFR23272.1| hypothetical protein AND_13185 [Anopheles darlingi]
Length = 621
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL----LIF 129
+G V ++ LR + E G+ T+IQ +++P L RD + A+TGSGKTL +L+ LI
Sbjct: 131 EGKVSDNTLRAIAEMGFTKMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPAVELIH 190
Query: 130 SLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDT 168
L R+ A+I+ PTREL MQ+ V + L A T
Sbjct: 191 KLRFKPRNGAGAIIISPTRELAMQIFGVLKELMAHHHQT 229
>gi|407794038|ref|ZP_11141068.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
gi|407213891|gb|EKE83744.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
Length = 605
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P VL R+ + G+ PT IQ +++PVL D + AQTG+GKT + L S+V+A +
Sbjct: 15 LPVVVLDRLQQLGFTQPTPIQAQSIPVLLDGADVLGEAQTGTGKTAAFGLPALSMVDASQ 74
Query: 137 SAVQAVIVVPTRELGMQV 154
+A Q ++V PTREL +QV
Sbjct: 75 AATQVLVVTPTRELAIQV 92
>gi|336259825|ref|XP_003344711.1| hypothetical protein SMAC_06365 [Sordaria macrospora k-hell]
gi|380088867|emb|CCC13147.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 584
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +L+ +N + S +Q +I+VP
Sbjct: 62 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFLIPALEKINPKVSKIQCLILVP 121
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 122 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTGLR 154
>gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
gi|383122089|ref|ZP_09942788.1| hypothetical protein BSIG_5243 [Bacteroides sp. 1_1_6]
gi|251837561|gb|EES65653.1| hypothetical protein BSIG_5243 [Bacteroides sp. 1_1_6]
gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
Length = 374
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 63/95 (66%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ E +L+ ++E GY +PT IQ +A+PV + +D + AQTG+GKT ++ +
Sbjct: 1 MTFKEL---NITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVN-----AQRSAVQAVIVVPTRELGMQVTK 156
I ++ +RS ++A+I+ PTREL +Q+++
Sbjct: 58 PIIQHLHLNKGEGKRSGIKALILTPTRELALQISE 92
>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
Length = 458
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337736000|ref|YP_004635447.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384457509|ref|YP_005669929.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336293433|gb|AEI34567.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 374
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E ++ + ++G PT +Q E++ + RD I AQTG+GKTL +LL IF ++
Sbjct: 8 ISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAFLLPIFENISPTL 67
Query: 137 SAVQAVIVVPTRELGMQVTKVA 158
SAVQA+IV PTREL +Q+T+ A
Sbjct: 68 SAVQALIVTPTRELALQITEQA 89
>gi|399020147|ref|ZP_10722287.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398096157|gb|EJL86486.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 899
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ E +LR + E GY P+ IQ +P L ++RD + AQTG+GKT + L I S ++ +
Sbjct: 13 NLSEPLLRVLKELGYETPSPIQAATIPTLLNNRDVLGQAQTGTGKTAAFALPILSRIDIR 72
Query: 136 RSAVQAVIVVPTRELGMQVTK 156
++A QA+++ PTREL +QV +
Sbjct: 73 QTAPQALVLAPTRELAIQVAE 93
>gi|422853135|ref|ZP_16899799.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK160]
gi|325697687|gb|EGD39572.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK160]
Length = 447
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 58/93 (62%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQA+I P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQALITAPSRELAAQIYQAARQLAS 94
>gi|154313296|ref|XP_001555974.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160380642|sp|A6RY31.1|DHH1_BOTFB RecName: Full=ATP-dependent RNA helicase dhh1
gi|347827091|emb|CCD42788.1| hypothetical protein [Botryotinia fuckeliana]
Length = 538
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E GY P+ IQ EA+PV + RD + A+ G+GKT +++ +N + + VQ +I+VP
Sbjct: 64 EMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVP 123
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++V + L +H VM G LR
Sbjct: 124 TRELALQTSQVCKTLG--------QHLGINVMVTTGGTTLR 156
>gi|406671543|ref|ZP_11078782.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
gi|405580793|gb|EKB54852.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
Length = 485
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ +L +DE G+ PT IQ++ +P+ S +D I AQTG+GKT + L + + ++ +
Sbjct: 7 NLKNELLTSLDELGFEEPTPIQQQGIPIALSGKDLIGQAQTGTGKTAAFGLPLLNKIDPK 66
Query: 136 RSAVQAVIVVPTRELGMQVTK 156
+ VQA+IV PTREL +QV +
Sbjct: 67 NTNVQALIVAPTRELAIQVQE 87
>gi|419766382|ref|ZP_14292586.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383354118|gb|EID31694.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 447
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ ++E + PT++Q + +P++ + RD + ++TGSGKT T+LL IF ++ V
Sbjct: 11 YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEASDNV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLAA 163
QAVI P+REL Q+ + AR ++A
Sbjct: 71 QAVITAPSRELATQIYQAARQISA 94
>gi|350536495|ref|NP_001233197.1| probable ATP-dependent RNA helicase DDX46 [Sus scrofa]
gi|336092215|gb|AEI00731.1| DEAD box polypeptide 46 [Sus scrofa]
Length = 1032
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L + + GY PT IQ +A+P + S RD + A+TGSGKT+ +LL +F + QRS +
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLMGIAKTGSGKTMAFLLPMFRHIMDQRSLEE 442
Query: 141 -----AVIVVPTRELGMQVTK 156
AVI+ PTREL +Q+TK
Sbjct: 443 GEGPIAVIMTPTRELALQITK 463
>gi|315222026|ref|ZP_07863937.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315188992|gb|EFU22696.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 447
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + +V T++Q + +PV+ + RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+N +VQ VI P+REL Q+ + AR +AA
Sbjct: 62 KLNEDADSVQVVITAPSRELARQIYQAARQIAA 94
>gi|307130576|ref|YP_003882592.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
Length = 454
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR ++E GY PT +QR+A+PV+ RD + AQTG+GKT + L + L+N +
Sbjct: 12 ILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNGRPSQAK 71
Query: 136 -RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 72 GRRPVRALILTPTRELAAQIGE 93
>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase [Bacillus cereus B4264]
gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
gi|410674757|ref|YP_006927128.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452198800|ref|YP_007478881.1| ATP-dependent RNA helicase BA2475 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
B4264]
gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|409173886|gb|AFV18191.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452104193|gb|AGG01133.1| ATP-dependent RNA helicase BA2475 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 458
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|390371036|dbj|GAB64917.1| DEAD/DEAH box helicase [Plasmodium cynomolgi strain B]
Length = 525
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
T R+L ++ E +L+ +DE G+ PT IQR+ LP F RD I ++TGSGKT +++
Sbjct: 126 TFRDL---NICEEILQSIDELGWKKPTAIQRKMLPYAFQKRDIIGLSETGSGKTACFIIP 182
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLD 182
I + +R + A+++ PTREL +Q+ + + L ++L CT+ +D
Sbjct: 183 ILQELREKRQSFFALVISPTRELCIQIAQHFQALG-----SNLLVNICTIFGGVD 232
>gi|355691613|gb|EHH26798.1| hypothetical protein EGK_16865 [Macaca mulatta]
Length = 1033
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGK + +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKIIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMGQRSLEEGEGPIAVIMTPTRELALQITK 463
>gi|410722849|ref|ZP_11362102.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410603845|gb|EKQ58271.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 369
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
++++G PT IQ +++P++ +D I A TG+GKTL +LL IF +N + + +Q +I+
Sbjct: 16 LEKSGITSPTPIQEQSIPIIAQGKDVIAEAATGTGKTLAFLLPIFEKINPKLNNIQTLIL 75
Query: 145 VPTRELGMQVTKVARVL 161
PTREL +Q+T A L
Sbjct: 76 TPTRELAIQITNEANKL 92
>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
Length = 433
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ + +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
Length = 1031
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTKVAR 159
F + QRS + AVI+ PTREL +Q+ K R
Sbjct: 431 FRHIMDQRSLEEGEGPLAVIMTPTRELALQIPKGVR 466
>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
Length = 433
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ + +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
Length = 723
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS-LVN---AQR 136
VL+ + + GY +PT IQR+++P++ RD + A+TGSGKT +LL +F L+N R
Sbjct: 38 VLKGIQKRGYKIPTPIQRKSIPLILQGRDVVAMARTGSGKTACFLLPMFEKLINKTPKSR 97
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
V+A+I+ PTREL +Q K + L
Sbjct: 98 LGVRALILSPTRELALQTVKFIKELG 123
>gi|423655270|ref|ZP_17630569.1| hypothetical protein IKG_02258 [Bacillus cereus VD200]
gi|401293332|gb|EJR98976.1| hypothetical protein IKG_02258 [Bacillus cereus VD200]
Length = 454
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPASSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
Length = 433
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ + +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 15 HTLR---ENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
Length = 680
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 10/116 (8%)
Query: 61 GTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGK 120
G GN +R + + E + + +++ Y+ PT +Q+ A+P++ RD + AQTGSGK
Sbjct: 214 GPGNIPAAIRSFSEAGLSESIQKNIEKAKYLKPTPVQKYAIPIILGDRDLMSCAQTGSGK 273
Query: 121 TLTYLLLIFSLV-------NAQRSAVQA---VIVVPTRELGMQVTKVARVLAAKPS 166
T +LL + + + +Q S VQA +I+ PTREL Q+ + AR + + S
Sbjct: 274 TAAFLLPVLASIMQHKDQLTSQLSEVQAPLGLIIAPTRELANQIYQEARKFSFQTS 329
>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 458
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPASSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
Length = 418
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + + GY P+ IQ E +P+ + +DCI A+TG+GKT + L + ++ +R
Sbjct: 24 EKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQLDLRRPG 83
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+QA+I+ PTREL QV R L K ++ L+ G +R ++ LK
Sbjct: 84 MQALILAPTRELSEQVAAEIRKLCT--------SKSLSIAVLVGGKPVRPQENQLK 131
>gi|290474026|ref|YP_003466900.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus bovienii SS-2004]
gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus bovienii SS-2004]
Length = 459
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN---AQ-- 135
+LR ++E GYV PT IQ++A+PV+ S +D + AQTG+GKT + L I L++ AQ
Sbjct: 12 ILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQLLSESPAQAK 71
Query: 136 -RSAVQAVIVVPTRELGMQV 154
R V+A+I+ PTREL QV
Sbjct: 72 GRRPVRALILTPTRELAAQV 91
>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 690
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 57 ELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQT 116
++A G+ +R + +P+ ++R +D+ GY PT IQR A+P+ RD I A+T
Sbjct: 256 QIATKGGSIPNPMRNWQEAGLPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKT 315
Query: 117 GSGKTLTYLLLIFSLVNA--------QRSAVQAVIVVPTRELGMQVTKVARVLA 162
GSGKT +LL + + ++ + A+I+ PTREL Q+ + AR A
Sbjct: 316 GSGKTAAFLLPLLAYISQLPPLDAINRHDGPYALILAPTRELAQQIEEEARKFA 369
>gi|423580692|ref|ZP_17556803.1| hypothetical protein IIA_02207 [Bacillus cereus VD014]
gi|401216558|gb|EJR23266.1| hypothetical protein IIA_02207 [Bacillus cereus VD014]
Length = 458
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPASSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|422857769|ref|ZP_16904419.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1057]
gi|327462431|gb|EGF08756.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1057]
Length = 447
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + + T +Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFTEFKFKDYIQEALRDLNFFEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+++ + +VQAVI P+REL Q+ + AR LA+
Sbjct: 62 MLDEEADSVQAVITAPSRELAAQIYQAARQLAS 94
>gi|195171912|ref|XP_002026746.1| GL13229 [Drosophila persimilis]
gi|194111680|gb|EDW33723.1| GL13229 [Drosophila persimilis]
Length = 455
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP VL+ + E NN +T++ + +G P++V+ + + G+
Sbjct: 107 YKPCDTVLARTQGETESFLT---NNEITIKGDQVPTPSIDFEEGGFPDYVMNEIRKQGFA 163
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ-----RSAVQAVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q A+++ P
Sbjct: 164 KPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 223
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 224 TRELAQQIQQVA 235
>gi|304404872|ref|ZP_07386532.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345751|gb|EFM11585.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 503
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
++ G PT +Q EA+ L + D +QTGSGKTL +LL + +++ SAVQAV++
Sbjct: 18 LEAAGIKEPTAVQSEAIAALLAGADVTARSQTGSGKTLAFLLPMLEQLDSASSAVQAVVL 77
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
PT+EL MQ+T+VA+ E V++L+ G + R LK
Sbjct: 78 APTQELAMQITRVAQAYG--------EAVGIRVVSLIGGAAMSRQVENLK 119
>gi|427400888|ref|ZP_18892126.1| hypothetical protein HMPREF9710_01722 [Massilia timonae CCUG 45783]
gi|425720067|gb|EKU82993.1| hypothetical protein HMPREF9710_01722 [Massilia timonae CCUG 45783]
Length = 609
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL+ + + GY P+ IQ +P+L RD + AQTG+GKT + L I S ++ +++A Q
Sbjct: 18 VLKALKDVGYETPSPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPILSNIDVKKTAPQ 77
Query: 141 AVIVVPTRELGMQVTKVARVLAA 163
A+++ PTREL +QV + + AA
Sbjct: 78 ALVLAPTRELAIQVAEAFQSYAA 100
>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD, partial [Rhodococcus equi ATCC
33707]
gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
Length = 453
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKT 121
T +N +T +L + E VL+ + + GY P+ IQ +P L +D + AQTG+GKT
Sbjct: 10 TDDNPITFADL---QIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKT 66
Query: 122 LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
+ + I S ++ R QA+I+ PTREL +QV +
Sbjct: 67 AAFAIPILSRLDVDRKVPQALILAPTRELALQVAE 101
>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 689
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E++L +D G+V PT IQ A+P+L RD + AQTG+GKT + L + + +N +
Sbjct: 43 ENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK 102
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL +QV
Sbjct: 103 PQAIIMAPTRELAIQV 118
>gi|150392377|ref|YP_001322426.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149952239|gb|ABR50767.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 387
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 86 DETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145
+ G+ PT IQ EA+P++ +D I + TG+GKTL YL+ I ++ + AVQAVI+
Sbjct: 26 NRVGFTAPTPIQEEAIPLILEGKDLIAESPTGTGKTLAYLIPILHRIDPESKAVQAVILA 85
Query: 146 PTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
P+ EL MQ + + + D ++ +P L+ G ++R LK
Sbjct: 86 PSHELAMQ---IHQTIEKWTKDNNISSEP-----LIGGANIKRQIENLK 126
>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
Length = 690
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 57 ELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQT 116
++A G+ +R + +P+ ++R +D+ GY PT IQR A+P+ RD I A+T
Sbjct: 256 QIATKGGSIPNPMRNWQEAGLPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKT 315
Query: 117 GSGKTLTYLLLIFSLVNA--------QRSAVQAVIVVPTRELGMQVTKVARVLA 162
GSGKT +LL + + ++ + A+I+ PTREL Q+ + AR A
Sbjct: 316 GSGKTAAFLLPLLAYISQLPPLDAINRHDGPYALILAPTRELAQQIEEEARKFA 369
>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase [Frankia sp. EuI1c]
gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
Length = 566
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VLR + E GY +P+ IQ +P L RD + AQTG+GKT + L I S ++A+ +A Q
Sbjct: 19 VLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILSRIDARSTATQ 78
Query: 141 AVIVVPTRELGMQVTK 156
A+++ PTREL +QV +
Sbjct: 79 ALVLAPTRELVLQVAE 94
>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 596
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P + R + + G+V P+ IQ +A+P L + RD + AQTG+GKT + L + + V+A
Sbjct: 32 LPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLAAVDAGT 91
Query: 137 SAVQAVIVVPTRELGMQV 154
+ VQA+++ PTREL MQV
Sbjct: 92 AGVQAIVLTPTRELAMQV 109
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ---- 135
H+LR + + GYV PT IQ +A+PVL RD + AQTG+GKT + L I ++ A
Sbjct: 75 HILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALPIIQMLLAHASTS 134
Query: 136 ----RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185
R V+A+I+ PTREL +QV + + A +H P + GGM
Sbjct: 135 TSPARHPVRALILTPTRELAVQVAENVKAYA--------QHTPLRSTVVF-GGM 179
>gi|436836087|ref|YP_007321303.1| DEAD/DEAH box helicase domain protein [Fibrella aestuarina BUZ 2]
gi|384067500|emb|CCH00710.1| DEAD/DEAH box helicase domain protein [Fibrella aestuarina BUZ 2]
Length = 658
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 51/82 (62%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L + E G+ P+ IQ EA+P + + RD I AQTG+GKT + + LV+ +VQ
Sbjct: 64 MLAAVTEMGFTTPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIPALELVDPSDRSVQ 123
Query: 141 AVIVVPTRELGMQVTKVARVLA 162
+I+ PTREL +QVT+ R L+
Sbjct: 124 VLILCPTRELALQVTEEMRKLS 145
>gi|357236543|ref|ZP_09123886.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus criceti HS-6]
gi|356884525|gb|EHI74725.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus criceti HS-6]
Length = 447
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + +D+ + PT +Q + +PV+ S RD + ++TGSGKT T+LL IF + A V
Sbjct: 11 YINQALDQMNFKEPTSVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLEAGVKQV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
QAVI P+REL Q+ K A+ +A
Sbjct: 71 QAVITAPSRELATQIYKAAKQMA 93
>gi|427725149|ref|YP_007072426.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427356869|gb|AFY39592.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 494
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
++ G+ PT+IQ +A+P + RD + +QTG+GKT Y L ++ Q AVQ +I+
Sbjct: 18 LENIGFEKPTEIQTKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLEKIDLQDKAVQGLIL 77
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL MQVT+ + A
Sbjct: 78 TPTRELAMQVTQALKQFA 95
>gi|407068769|ref|ZP_11099607.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 662
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++L +D G+V PT IQ A+P+L RD + AQTG+GKT + L + + +N +
Sbjct: 15 DNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK 74
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL +QV
Sbjct: 75 PQAIIMAPTRELAIQV 90
>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
Length = 444
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
++ R+ +TG +PT +Q A+P L RD I AQTG GKTL++++ +F+ + ++ VQ
Sbjct: 44 LVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLFTKITEVKTFVQ 103
Query: 141 AVIVVPTRELGMQVTKVARVLA 162
A+I+ PTREL Q + LA
Sbjct: 104 ALILSPTRELAQQTAGEIKKLA 125
>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
Length = 650
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS-------- 130
+ VL + ++GY PT IQ+ A+P++ S RD + AQTGSGKT +LL I +
Sbjct: 223 QFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGSGKTAAFLLPIINVLLSDPRD 282
Query: 131 -LVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
++ A+ A+IV PTREL +Q+ AR A
Sbjct: 283 LILTAEHCEPHAIIVSPTRELTLQIYSEARKFA 315
>gi|167385227|ref|XP_001737255.1| ATP-dependent RNA helicase DDX55 [Entamoeba dispar SAW760]
gi|165899983|gb|EDR26453.1| ATP-dependent RNA helicase DDX55, putative [Entamoeba dispar
SAW760]
Length = 499
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ---- 140
+ E G++ PT++Q+ +P + +D I+ +QTGSGKTL++L+ +F ++ +R ++
Sbjct: 20 IKEFGFIKPTEVQKVVIPAFLNRKDVIVQSQTGSGKTLSFLIPLFEIIKREREIIEKKEV 79
Query: 141 -AVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185
+I+ PTREL Q+ + +V + T + LL GG+
Sbjct: 80 YGIIISPTRELAHQIYDITKVFCKHFNMT---------IGLLTGGI 116
>gi|308070585|ref|YP_003872190.1| RNA helicase yqfR [Paenibacillus polymyxa E681]
gi|305859864|gb|ADM71652.1| Probable RNA helicase yqfR [Paenibacillus polymyxa E681]
Length = 463
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V + +L ++ E P+ +Q EA+P + + + +QTG+GKTL YLL + ++ Q+
Sbjct: 10 VEQDLLDKLTEHEITQPSPVQAEAIPEIIKGKHVLARSQTGTGKTLAYLLPLLQAIDPQK 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
A Q +I+ P++EL MQ+ + + EH+ V+ L+ G ++R LK
Sbjct: 70 KATQKLILAPSQELAMQIVREGQRYG--------EHRGIRVLGLIGGAAIKRQIEKLK 119
>gi|339640469|ref|ZP_08661913.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453738|gb|EGP66353.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 447
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + +++ + + + +V T++Q + +PV+ S RD + ++TGSGKT T+LL IF
Sbjct: 2 KFIEFEFKDYIQKALQDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
+N + VQ VI P+REL Q+ + R +A+ SDT++
Sbjct: 62 KLNEEADHVQVVITAPSRELATQIYQATRQIAS-FSDTEI 100
>gi|374320107|ref|YP_005073236.1| RNA helicase yqfR [Paenibacillus terrae HPL-003]
gi|357199116|gb|AET57013.1| RNA helicase yqfR [Paenibacillus terrae HPL-003]
Length = 464
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V + +L ++ E P+ +Q +A+P + R + +QTG+GKTL YLL + ++ Q+
Sbjct: 10 VEQDLLTKLAEHEITQPSPVQAQAIPEMIKGRHVLARSQTGTGKTLAYLLPLLQAIDPQK 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
A Q +I+ P++EL MQ+ + R EH+ V+ L+ G + R LK
Sbjct: 70 KATQKLILAPSQELAMQIVREGRRYG--------EHRGIRVLGLIGGAAVNRQIEKLK 119
>gi|312863883|ref|ZP_07724121.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
vestibularis F0396]
gi|311101419|gb|EFQ59624.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
vestibularis F0396]
Length = 447
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
++ + +DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + V
Sbjct: 11 YIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPESRDV 70
Query: 140 QAVIVVPTRELGMQVTKVARVLA 162
Q VI P+REL Q+ + + +A
Sbjct: 71 QVVITAPSRELATQIYQATKQIA 93
>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 643
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 78 PEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS 137
PE +L+ + + G++ P+ IQ EA+P + RD I AQTG+GKT + + L++ Q
Sbjct: 40 PE-LLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDLIDVQDR 98
Query: 138 AVQAVIVVPTRELGMQVTKVARVLA 162
+VQ +I+ PTREL +QV + + LA
Sbjct: 99 SVQTLILCPTRELALQVAEEIKKLA 123
>gi|310643767|ref|YP_003948525.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309248717|gb|ADO58284.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
gi|392304504|emb|CCI70867.1| DEAD-box ATP-dependent RNA helicase 42 [Paenibacillus polymyxa M1]
Length = 463
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V + +L ++ E P+ +Q EA+P + + + +QTG+GKTL YLL + ++ Q+
Sbjct: 10 VEQDLLDKLTEHEITQPSPVQAEAIPEIMKGKHVLARSQTGTGKTLAYLLPLLQAIDPQK 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
A Q +I+ P++EL MQ+ + + EH+ V+ L+ G ++R LK
Sbjct: 70 KATQKLILAPSQELAMQIVREGQRYG--------EHRGIRVLGLIGGAAIKRQIEKLK 119
>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417956599|ref|ZP_12599563.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342809439|gb|EGU44558.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 458
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+D GY T IQ++ALP++ + +D I +TGSGKT T+ L + S +N +R VQ +++
Sbjct: 18 LDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVKRFRVQTLVL 77
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL QV K R LA
Sbjct: 78 CPTRELADQVAKEIRTLA 95
>gi|399887626|ref|ZP_10773503.1| ATP-dependent RNA helicase [Clostridium arbusti SL206]
Length = 380
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PTDIQ + +P+ ++D I +QTG+GKTL YLL +F +++ + +Q +I+ PT EL
Sbjct: 25 IPTDIQTKVIPLALENKDIIAQSQTGTGKTLAYLLPVFQKIDSSKKEMQCIILAPTHELV 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRR 188
MQ+ + +L+ +T CT++ D M R+
Sbjct: 85 MQIDREIELLSENCDNT---ITSCTIIG--DVNMSRQ 116
>gi|387784812|ref|YP_006070895.1| putative ATP-dependent RNA helicase [Streptococcus salivarius
JIM8777]
gi|338745694|emb|CCB96060.1| putative ATP-dependent RNA helicase [Streptococcus salivarius
JIM8777]
Length = 447
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + VQ VI
Sbjct: 16 LDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPKSGDVQVVIT 75
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDL 170
P+REL Q+ + + + AK S+T++
Sbjct: 76 APSRELATQIYQATKQI-AKHSETEI 100
>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 434
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
EL +H LR E G T IQ +A+PV+ +D I A+TG+GKTL ++L I
Sbjct: 9 ELGMSETFQHTLR---ENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPILE 65
Query: 131 LVNAQRSAVQAVIVVPTRELGMQV-TKVARVLAAK 164
++ S +QA+IV PTREL +Q+ T++ ++L K
Sbjct: 66 NIDPNASDIQALIVAPTRELALQITTEIKKMLVHK 100
>gi|346322833|gb|EGX92431.1| ATP dependent RNA helicase (Dhh1), putative [Cordyceps militaris
CM01]
Length = 1261
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ + +N + + +Q +I+VP
Sbjct: 824 EAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPVLERINPKVNKIQCLILVP 883
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 884 TRELAMQTSQVCKTLG--------KHLGVNVMVTTGGTGLR 916
>gi|389818009|ref|ZP_10208502.1| RNA helicase-like protein [Planococcus antarcticus DSM 14505]
gi|388464153|gb|EIM06487.1| RNA helicase-like protein [Planococcus antarcticus DSM 14505]
Length = 386
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 84 RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVI 143
+ ++ G+ IQ + +P + + D + + TGSGKTL Y+L I VN ++ A+QA+I
Sbjct: 14 KWEKAGFETAMPIQEQMIPEMLAGNDIVAESPTGSGKTLAYVLPILERVNPEKPAIQAMI 73
Query: 144 VVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
V P++EL MQ+ V R DTD TV L+ G ++R LK
Sbjct: 74 VAPSQELSMQIVNVLREWT---EDTD-----VTVTQLIGGANMQRQLEKLK 116
>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 517
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 11/125 (8%)
Query: 62 TGN----NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTG 117
TGN N +T E Q ++ E VL+ + E G+ PT IQ++ LP++F RD I ++TG
Sbjct: 98 TGNDAEQNEITSFE--QLNICEEVLQSIKELGWEKPTLIQQKVLPIVFQKRDIIGLSETG 155
Query: 118 SGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTV 177
SGKT +++ I + ++ + A+I+ PTREL +Q+ + A+ L + +L CT+
Sbjct: 156 SGKTACFIIPILQELKIKKQSFFALIISPTRELCIQIAQNAQALGS-----NLLINICTI 210
Query: 178 MALLD 182
+D
Sbjct: 211 FGGVD 215
>gi|334310946|ref|XP_001370541.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Monodelphis domestica]
Length = 1179
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 519 IKTWVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 578
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR+ + AVI+ PTREL +Q+TK
Sbjct: 579 FRHIMDQRALEEGEGPIAVIMTPTRELALQITK 611
>gi|134299705|ref|YP_001113201.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052405|gb|ABO50376.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 438
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ + G PT IQ+ A+P+ ++D I +QTGSGKTL YLL IF +++ + QA+I+
Sbjct: 18 LSKQGIKNPTAIQKVAIPLALKNKDIIGQSQTGSGKTLAYLLPIFQKIDSSKRETQALIL 77
Query: 145 VPTRELGMQVTKVARVLAA 163
PT EL MQ+ K + L++
Sbjct: 78 APTHELVMQIDKQIKTLSS 96
>gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase [Nostoc punctiforme PCC 73102]
gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
73102]
Length = 509
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+L+ +EL + + + ++++ G+ PT+IQ +A+P L RD + +QTG+GKT +
Sbjct: 2 TLSFQELG---ISQERVAQLEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFS 58
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L I ++ + AVQA+++ PTREL MQV
Sbjct: 59 LPILERLDINQKAVQAIVLTPTRELAMQV 87
>gi|29347295|ref|NP_810798.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 374
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 63/95 (66%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ E +L+ ++E GY +PT IQ +A+PV + +D + AQTG+GKT ++ +
Sbjct: 1 MTFKEL---NITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVN-----AQRSAVQAVIVVPTRELGMQVTK 156
I ++ +RS ++A+I+ PTREL +Q+++
Sbjct: 58 PIIQHLHLNKGEGKRSEIKALILTPTRELALQISE 92
>gi|410910308|ref|XP_003968632.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Takifugu
rubripes]
Length = 482
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 16 RVNHKLSSPNSIEF----TNRAFLPVSISWKP-LRAVLSSSAVSIEELAAGTGNNSLTLR 70
+VN + N+ F T A + WK L+ + ++ A GN
Sbjct: 42 QVNQMKGAINNGNFQPAPTTNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNE---FE 98
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ C + +L + E G+ P+ IQ E++P+ S RD + A+ G+GK+ YL+ +
Sbjct: 99 DYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 155
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVA 158
++ +R +QAV++VPTREL +QV+++
Sbjct: 156 RIDLKRDCIQAVVIVPTRELALQVSQIC 183
>gi|421453123|ref|ZP_15902479.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
gi|400181432|gb|EJO15699.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
Length = 471
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + VQ VI
Sbjct: 40 LDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPKSGDVQVVIT 99
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDL 170
P+REL Q+ + + + AK S+T++
Sbjct: 100 APSRELATQIYQATKQI-AKHSETEI 124
>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 539
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
+ REL ++ E +L+ ++E G+ PT IQR+ LP F RD I ++TGSGKT +++
Sbjct: 133 SFREL---NICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIP 189
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLD 182
I + +R + A+++ PTREL +Q+ + + L ++L CT+ +D
Sbjct: 190 ILQELREKRQSFFALVISPTRELCIQIAQHFQALG-----SNLLINICTIFGGVD 239
>gi|418018560|ref|ZP_12658116.1| putative ATP-dependent RNA helicase yqfR [Streptococcus salivarius
M18]
gi|345527409|gb|EGX30720.1| putative ATP-dependent RNA helicase yqfR [Streptococcus salivarius
M18]
Length = 447
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE + PT +Q++ +PV+ S RD + ++TGSGKT T+LL IF +N + VQ VI
Sbjct: 16 LDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLNPKSGDVQVVIT 75
Query: 145 VPTRELGMQVTKVARVLAAKPSDTDL 170
P+REL Q+ + + + AK S+T++
Sbjct: 76 APSRELATQIYQATKQI-AKHSETEI 100
>gi|440784133|ref|ZP_20961554.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
gi|440219169|gb|ELP58384.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
Length = 479
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 58/86 (67%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+ C+ ++ + +L +++ GY PT++Q+E +P++ ++D I+ ++TGSGKT ++ + I
Sbjct: 1 MENFCKFNISKRILLSLEKLGYKNPTEVQKEVIPLVLKNKDIIVQSETGSGKTASFGIPI 60
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQV 154
+ + + +Q++++ PTREL +Q+
Sbjct: 61 CEKIQIENNIIQSLVITPTRELCVQI 86
>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
Length = 673
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++L +D G+V PT IQ A+P+L RD + AQTG+GKT + L + + +N +
Sbjct: 15 DNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK 74
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL +QV
Sbjct: 75 PQAIIMAPTRELAIQV 90
>gi|449544646|gb|EMD35619.1| hypothetical protein CERSUDRAFT_96734 [Ceriporiopsis subvermispora
B]
Length = 502
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 40 SWKP-LRAVLSSSAVSIEELAAGTG---NNSLTLRELCQGHVPEHVLRRMDETGYVLPTD 95
+WK LR S E++ A G + REL G + E G+ P+
Sbjct: 20 TWKASLRPPPKDSRPQTEDVTATKGTEFEDMFLRRELLMG---------IFEAGFEKPSP 70
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
IQ EA+PV + RD + A+ G+GKT +++ V+ ++ +QA+++VPTREL +Q
Sbjct: 71 IQEEAIPVALAKRDVLARAKNGTGKTAAFVIPTLQQVDVNKNKIQALLLVPTRELALQTA 130
Query: 156 KVARVLA 162
+V ++L
Sbjct: 131 QVCKILG 137
>gi|357417152|ref|YP_004930172.1| ATP-dependent RNA helicase DbpA [Pseudoxanthomonas spadix BD-a59]
gi|355334730|gb|AER56131.1| ATP-dependent RNA helicase DbpA [Pseudoxanthomonas spadix BD-a59]
Length = 458
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAV 142
R +D GY PTDIQ ALP + RD I A TGSGKT + L + + ++ QA+
Sbjct: 15 RGLDAAGYTRPTDIQARALPPILEGRDVIAQAPTGSGKTAAFALGLLTRMDTGLVKTQAL 74
Query: 143 IVVPTRELGMQVTKVARVLAA----------------KPSDTDLEHKPCTVMA 179
++ PTREL QV + R LA +P LEH P V+
Sbjct: 75 VLCPTRELADQVARAVRRLAVGLPNLKVSLLCGGMALEPQLASLEHDPHVVVG 127
>gi|342215043|ref|ZP_08707712.1| DEAD/DEAH box helicase [Veillonella sp. oral taxon 780 str. F0422]
gi|341590149|gb|EGS33398.1| DEAD/DEAH box helicase [Veillonella sp. oral taxon 780 str. F0422]
Length = 432
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134
G VPE +++ + + G PT IQ +++P++F +D I AQTG+GKTL +LL + ++
Sbjct: 8 GIVPE-LIQALQKVGVKEPTPIQEKSIPLIFKGQDVIAKAQTGTGKTLAFLLPLLQRIHV 66
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVLAA 163
QA+I+ PTREL Q+ + AR L A
Sbjct: 67 DVQQEQALIIAPTRELIQQIAEEARHLGA 95
>gi|398390239|ref|XP_003848580.1| hypothetical protein MYCGRDRAFT_101609 [Zymoseptoria tritici
IPO323]
gi|339468455|gb|EGP83556.1| hypothetical protein MYCGRDRAFT_101609 [Zymoseptoria tritici
IPO323]
Length = 504
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 36 PVSISWKP-LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPT 94
P WK L+A E++ A G L E ++ +L + E G+ P+
Sbjct: 19 PAGGDWKAGLKAPAKDGRHQTEDVTATKG---LEFEEF---YLKRELLMGIFEAGFEKPS 72
Query: 95 DIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
IQ E +PV S RD + A+ G+GKT +++ +N + VQA+++VPTREL +Q
Sbjct: 73 PIQEETIPVALSGRDILARAKNGTGKTAAFVIPTLERINPKLDKVQALLLVPTRELALQT 132
Query: 155 TKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
++V + L +H VM G LR
Sbjct: 133 SQVCKTLG--------KHLGINVMVTTGGTGLR 157
>gi|352683815|ref|YP_004895799.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus intestini
RyC-MR95]
gi|350278469|gb|AEQ21659.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus intestini
RyC-MR95]
Length = 414
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
++ R+ +TG +PT +Q A+P L RD I AQTG GKTL++++ +F+ + ++ VQ
Sbjct: 14 LVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLFTKITEVKTFVQ 73
Query: 141 AVIVVPTRELGMQVTKVARVLA 162
A+I+ PTREL Q + LA
Sbjct: 74 ALILSPTRELAQQTAGEIKKLA 95
>gi|336066886|ref|YP_004561744.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296832|dbj|BAK32703.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 584
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL + E ++R + E GY PTDIQ +A+P+L + D + +QTG+GKT + L
Sbjct: 1 MTFKEL---ELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGL 57
Query: 127 LIFSLVN-AQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ SL + ++I+ PTREL MQV + R +
Sbjct: 58 PMLSLTQPGDKKRTNSLILCPTRELCMQVAEEMRSFS 94
>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
Length = 793
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ + + + N +T++ E +G P++V+ + + G+
Sbjct: 111 YKPCDSVLARTKGETDSFLS---TNEITIKGQEVPTPSIEFEEGGFPDYVMNEIRKQGFT 167
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + +P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 168 KPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 227
Query: 147 TRELGMQVTKVA 158
TREL Q+ VA
Sbjct: 228 TRELAQQIQAVA 239
>gi|403388886|ref|ZP_10930943.1| ATP-dependent RNA helicase DeaD [Clostridium sp. JC122]
Length = 499
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 64 NNSLTLRELCQG------HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTG 117
NN + R L + ++ EH+L+ + G+ P+ +Q +A+P L D I+ +QTG
Sbjct: 11 NNYIIRRVLMENILFEDLNLDEHILKALKNLGFNKPSQVQEKAIPYLLRGEDIIVKSQTG 70
Query: 118 SGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
SGKT ++ + + + S VQ++++VPTREL MQV
Sbjct: 71 SGKTASFGIPLCEKTQVENSVVQSLVLVPTRELAMQV 107
>gi|167540072|ref|XP_001741531.1| ATP-dependent RNA helicase has1 [Entamoeba dispar SAW760]
gi|165893947|gb|EDR22062.1| ATP-dependent RNA helicase has1, putative [Entamoeba dispar SAW760]
Length = 518
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 49 SSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSR 108
S S EE + GT + LT E ++ E + + ++E GY T IQ ++P+L +
Sbjct: 36 SKSKEENEEKSKGTTSTFLTDIEYKSLNLSEEIQKALEEAGYTKMTTIQARSIPLLLMGK 95
Query: 109 DCILHAQTGSGKTLTYLLLIFSLVNA----QRSAVQAVIVVPTRELGMQVTKV-ARVLA 162
D + A+TGSGKTL +L+ I ++N R+ A+I+ PTREL +Q +V ++LA
Sbjct: 96 DIMAKARTGSGKTLAFLIPIVEILNKIHFQTRNGTGAIIISPTRELAIQTFEVLEKILA 154
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE+VL + + G+ +P+ IQ E +PVL D + AQTG+GKT + L I S ++ +
Sbjct: 81 LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140
Query: 137 SAVQAVIVVPTRELGMQVTK 156
QA+++ PTREL +QV +
Sbjct: 141 RHPQALVLAPTRELALQVAE 160
>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
Ech1591]
gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
Length = 455
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR ++E GY PT +QR+A+PV+ RD + AQTG+GKT + L + L+N +
Sbjct: 12 ILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNERPVLAK 71
Query: 136 -RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 72 GRRPVRALILTPTRELAAQIGE 93
>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
melpomene]
Length = 646
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLV 132
+G+ P+H++ + E G+ PT IQ + P+ S RD + A TGSGKTL Y+L +V
Sbjct: 239 EGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHIV 298
Query: 133 NAQR----SAVQAVIVVPTRELGMQVTKVARVLAA 163
+ QR A+I+ PTREL Q+ VA+ +A
Sbjct: 299 HQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSA 333
>gi|365540016|ref|ZP_09365191.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 674
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L ++E G+V PT IQ A+P L RD + AQTG+GKT + L + + +N +
Sbjct: 15 ESILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK 74
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAK 164
QA+++ PTREL +QV + L K
Sbjct: 75 PQAIVMAPTRELAIQVAAEIKNLGQK 100
>gi|343524693|ref|ZP_08761651.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343398342|gb|EGV10875.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 203
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + + +V T++Q + +PV+ + RD + ++TGSGKT T+LL IF +N +
Sbjct: 10 DYIQEVLKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIFQKLNEDADS 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAA 163
VQ VI P+REL Q+ + AR +AA
Sbjct: 70 VQVVITAPSRELARQIYQAARQIAA 94
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
V E + R +++ GY P+ IQ +A+P + D I AQTG+GKT ++ + I ++
Sbjct: 10 QVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENIDRD 69
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
+QA+++ PTREL +QV++ R LA
Sbjct: 70 NRKLQAIVLCPTRELAIQVSEEVRKLA 96
>gi|183229616|ref|XP_657423.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169803121|gb|EAL52039.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703658|gb|EMD44066.1| ATPdependent RNA helicase DDX55, putative [Entamoeba histolytica
KU27]
Length = 499
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 14/112 (12%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ L + E G+ PT++Q+ +P +D I+ +QTGSGKTL++L+ +F ++ +R +
Sbjct: 14 KETLDTIKEFGFSKPTEVQKVVIPAFLDRKDVIVQSQTGSGKTLSFLIPLFEIIKRERES 73
Query: 139 VQ-----AVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185
++ +I+ PTREL Q+ +A++ + T + LL GG+
Sbjct: 74 IEKKEVYGIIISPTRELAHQIYDIAKIFCKHFNMT---------IGLLTGGI 116
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ + + R + E G+ P+ IQ +++PV+ S +D I AQTG+GKT + + I V+
Sbjct: 11 ISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPILEKVDPNN 70
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
+QA+++ PTREL +QV+K R L
Sbjct: 71 KHLQAIVLCPTRELAIQVSKEIRKLG 96
>gi|440793408|gb|ELR14592.1| atpdependent rna helicase ddx6, putative [Acanthamoeba castellanii
str. Neff]
Length = 407
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
E++ GN E ++ +L + E G+ P+ IQ EA+P+ + RD + A+
Sbjct: 33 EDVTTTKGN------EFEDYYLKRELLMGIYEKGFENPSPIQEEAIPIALAGRDILARAK 86
Query: 116 TGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
G+GKT ++L+ +N +++ +QA+I+VPTREL +Q ++V + L
Sbjct: 87 NGTGKTASFLIPALERINTEQNIIQALILVPTRELALQTSQVCKELG 133
>gi|302839218|ref|XP_002951166.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
f. nagariensis]
gi|300263495|gb|EFJ47695.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
f. nagariensis]
Length = 406
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 49 SSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLF 105
+ V E++ A GN + REL G + E G+ P+ IQ E++P+
Sbjct: 17 KDARVRTEDVTATKGNEFEDYFLKRELLMG---------IFEKGFEKPSPIQEESIPIAL 67
Query: 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ RD + A+ G+GKT + + + V+ RS +QA+++VPTREL +Q +V + LA
Sbjct: 68 AGRDILARAKNGTGKTAAFCIPVLERVDPTRSVIQALLLVPTRELALQTAQVCKELA 124
>gi|328859802|gb|EGG08910.1| hypothetical protein MELLADRAFT_34708 [Melampsora larici-populina
98AG31]
Length = 765
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 40 SWKPLRAVLSSSAVSIEE---LAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDI 96
S KPL A+ E +AA GN +R + +P +L +DE GY P+ I
Sbjct: 275 SQKPLEAMRERDWRIFREDFSIAARGGNIPNPMRSWDESKIPMQILEIIDEVGYKEPSPI 334
Query: 97 QREALPVLFSSRDCILHAQTGSGKT-------LTYLLLIFSLVNAQRS-AVQAVIVVPTR 148
QR+A+P+ ++RD I A+TGSGKT LTY+ + L + R A+I+ PTR
Sbjct: 335 QRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLTYIGKLAPLTDENRHLGPYALILAPTR 394
Query: 149 ELGMQV 154
EL Q+
Sbjct: 395 ELAQQI 400
>gi|410612261|ref|ZP_11323341.1| probable ATP-dependent RNA helicase exp9 [Glaciecola psychrophila
170]
gi|410168262|dbj|GAC37230.1| probable ATP-dependent RNA helicase exp9 [Glaciecola psychrophila
170]
Length = 394
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA- 134
+ E +LR + + GY PT IQ +A+PV+ S ++ I AQTG+GKT +++L I +N
Sbjct: 7 QLSEPILRALKDLGYTQPTPIQEQAIPVILSGKNLIAAAQTGTGKTASFVLPILQCLNNG 66
Query: 135 ---QRSAVQAVIVVPTRELGMQVTK 156
+ ++A+I+VPTREL +QV K
Sbjct: 67 HKLRGKRIRALILVPTRELAVQVEK 91
>gi|423088558|ref|ZP_17076937.1| putative ATP-dependent RNA helicase DbpA [Clostridium difficile
70-100-2010]
gi|357559444|gb|EHJ40892.1| putative ATP-dependent RNA helicase DbpA [Clostridium difficile
70-100-2010]
Length = 497
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + GY +P+ +QRE +P L ++ ++ ++TGSGKT ++ + + +N +
Sbjct: 12 EKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNN 71
Query: 139 VQAVIVVPTRELGMQV 154
VQA+IVVPTREL +QV
Sbjct: 72 VQALIVVPTRELALQV 87
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE+VL + + G+ +P+ IQ E +PVL D + AQTG+GKT + L I S ++ +
Sbjct: 81 LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140
Query: 137 SAVQAVIVVPTRELGMQVTK 156
QA+++ PTREL +QV +
Sbjct: 141 RHPQALVLAPTRELALQVAE 160
>gi|85857908|ref|YP_460110.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
gi|85720999|gb|ABC75942.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
Length = 525
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ D+Q +A+P + + RD ++ ++TGSGKT YLL I ++ +++A QA+I+VPTR
Sbjct: 57 GWTKLMDVQAKAIPYILARRDLMIQSKTGSGKTGAYLLPILGRLDPRKAACQAMILVPTR 116
Query: 149 ELGMQVTKVARVLAA 163
EL +QV++ A +L+A
Sbjct: 117 ELALQVSREALLLSA 131
>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 594
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL + E ++R + E GY PTDIQ +A+P+L + D + +QTG+GKT + L
Sbjct: 17 MTFKEL---ELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGL 73
Query: 127 LIFSLVN-AQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ SL + ++I+ PTREL MQV + R +
Sbjct: 74 PMLSLTQPGDKKRTNSLILCPTRELCMQVAEEMRSFS 110
>gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase [Desulfatibacillum alkenivorans AK-01]
gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 489
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 56 EELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQ 115
EE AAG LT + +PE +L + + G+ T IQ + LPV S +D AQ
Sbjct: 11 EERAAGP--RFLTNTKFADFDLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQ 68
Query: 116 TGSGKTLTYLLLIFS----LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171
TG+GKT +L+ +FS L N ++ A+IV PTREL +Q+ + A VL
Sbjct: 69 TGTGKTAAFLVPMFSKLLGLENRSKTLPSALIVAPTRELALQIYEEAEVLGG-------- 120
Query: 172 HKPCTVMALLDGGMLRRHKSWLK 194
H T+ + G R+ LK
Sbjct: 121 HTDFTIAQAIGGMDYRKQMDILK 143
>gi|348685911|gb|EGZ25726.1| hypothetical protein PHYSODRAFT_486355 [Phytophthora sojae]
Length = 852
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV--NAQRSA 138
V R + GY +PT IQR++LP++ S +DC+ A+TGSGKT +L+ + + ++ +
Sbjct: 47 VFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLIPMLEKLKEHSTKIG 106
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
V+AV++ PTREL +Q + A+ L+
Sbjct: 107 VRAVVLSPTRELAVQTLRFAKQLS 130
>gi|15672392|ref|NP_266566.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|385829978|ref|YP_005867791.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis CV56]
gi|418038509|ref|ZP_12676838.1| hypothetical protein LLCRE1631_01645 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723284|gb|AAK04508.1|AE006277_8 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|326405986|gb|ADZ63057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
subsp. lactis CV56]
gi|354693157|gb|EHE92934.1| hypothetical protein LLCRE1631_01645 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374672485|dbj|BAL50376.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis IO-1]
Length = 446
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + ++ + PT++Q + +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 10 DYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDE 69
Query: 139 VQAVIVVPTRELGMQVTKVAR 159
VQAVI P+REL Q+ K A+
Sbjct: 70 VQAVITAPSRELATQIYKAAQ 90
>gi|423302506|ref|ZP_17280528.1| hypothetical protein HMPREF1057_03669 [Bacteroides finegoldii
CL09T03C10]
gi|408470382|gb|EKJ88916.1| hypothetical protein HMPREF1057_03669 [Bacteroides finegoldii
CL09T03C10]
Length = 374
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 61/95 (64%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T R+L ++ E +L+ ++E GY +PT IQ +A+P + RD + AQTG+GKT ++ +
Sbjct: 1 MTFRDL---NIIELILKAIEEKGYTVPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVNA-----QRSAVQAVIVVPTRELGMQVTK 156
I + A +R ++A+I+ PTREL +Q+++
Sbjct: 58 PIIQHLQANKETDKRQGIKALILTPTRELALQISE 92
>gi|11499835|ref|NP_071079.1| DEAD/DEAH box helicase [Archaeoglobus fulgidus DSM 4304]
gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
fulgidus DSM 4304]
Length = 368
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFS-SRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ E+ L + G+ PT+IQRE +P F +D + AQTGSGKT + L I LV+ +
Sbjct: 14 ISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILDLVDER 73
Query: 136 RSAVQAVIVVPTRELGMQV 154
VQA+++ PTREL +QV
Sbjct: 74 SKDVQAIVITPTRELALQV 92
>gi|407043980|gb|EKE42287.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 504
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 14/112 (12%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ L + E G+ PT++Q+ +P +D I+ +QTGSGKTL++L+ +F ++ +R +
Sbjct: 19 KETLDTIKEFGFNTPTEVQKVVIPAFLDRKDVIVQSQTGSGKTLSFLIPLFEIIKRERES 78
Query: 139 VQ-----AVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185
++ +I+ PTREL Q+ +A++ + T + LL GG+
Sbjct: 79 IEKKEVYGIIISPTRELAHQIYDIAKIFCKHFNMT---------IGLLTGGI 121
>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
12333]
Length = 589
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P+ +L + G+ PT IQ A+P L S RD + AQTG+GKT + L + + V+ Q
Sbjct: 27 LPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLAAVDPQL 86
Query: 137 SAVQAVIVVPTRELGMQVTK 156
+AVQA+++ PTREL +QV+
Sbjct: 87 AAVQALVLTPTRELAIQVSD 106
>gi|387889903|ref|YP_006320201.1| ATP-dependent RNA helicase [Escherichia blattae DSM 4481]
gi|414592428|ref|ZP_11442078.1| ATP-dependent RNA helicase RhlE [Escherichia blattae NBRC 105725]
gi|386924736|gb|AFJ47690.1| ATP-dependent RNA helicase [Escherichia blattae DSM 4481]
gi|403196497|dbj|GAB79730.1| ATP-dependent RNA helicase RhlE [Escherichia blattae NBRC 105725]
Length = 455
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQ---- 135
+LR + E GY PT +QR+A+PV+ + RD + AQTG+GKT + L L+ L+N Q
Sbjct: 12 ILRAVAEAGYSEPTPVQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQRLINNQPHAK 71
Query: 136 -RSAVQAVIVVPTRELGMQVTKVAR 159
R V+A+I+ PTREL QV + R
Sbjct: 72 GRRPVRALILTPTRELAAQVGENVR 96
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
L+ + ++ + VL+ + E G+ P+ IQ+EA+PV D I AQTG+GKT + + I
Sbjct: 6 LQAFGEINLSKQVLQALSEMGFEEPSPIQKEAIPVAMDGVDLIGQAQTGTGKTAAFGIPI 65
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQV----TKVARVLAAKP 165
VN + AVQA+I+ PTREL +QV +K+ + KP
Sbjct: 66 CEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKP 106
>gi|342320339|gb|EGU12280.1| ATP-dependent RNA helicase dhh1 [Rhodotorula glutinis ATCC 204091]
Length = 557
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 20/135 (14%)
Query: 56 EELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
E++ A GN + REL G + E G+ P+ IQ EA+P+ + RD +
Sbjct: 34 EDVTATKGNEFEDYFLKRELLMG---------IFEAGFERPSPIQEEAIPIALTGRDILA 84
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEH 172
A+ G+GKT +++ + VN + +QA+++VPTREL +Q ++V + L +H
Sbjct: 85 RAKNGTGKTAAFIIPVLERVNPKIPKIQALLLVPTRELALQTSQVCKTLG--------KH 136
Query: 173 KPCTVMALLDGGMLR 187
VM G LR
Sbjct: 137 TGAQVMVTTGGTTLR 151
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 17/127 (13%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ E ++ + E GYV PT IQ +A+P RD + AQTG+GKT + L
Sbjct: 1 MTFKEL---NLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTL 57
Query: 127 LIFSLVNAQ-----RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALL 181
I L++A+ R ++A+++ PTREL +Q+ + R A TDL H C +
Sbjct: 58 PILQLLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARY---TDLRH--CVIF--- 109
Query: 182 DGGMLRR 188
GG+ +R
Sbjct: 110 -GGVNQR 115
>gi|308805024|ref|XP_003079824.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116058281|emb|CAL53470.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 425
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 40 SWKPLRAV-LSSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTD 95
+WK A+ + E++ A GN + REL G + E G+ P+
Sbjct: 26 NWKDTLAIPAKDTRYRTEDVTATKGNEFEDYFLKRELLMG---------IFEKGFERPSP 76
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
IQ E++P+ + RD + A+ G+GKT + + I V+ ++ +QAVI+VPTREL +Q +
Sbjct: 77 IQEESIPIALTGRDILARAKNGTGKTAAFSIPILEKVDTSKNIIQAVILVPTRELALQTS 136
Query: 156 KVARVLA 162
+V + L
Sbjct: 137 QVCKELG 143
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G PT +Q +A+P++ RD I AQTG+GKTL ++L I ++ + QA+IV PTR
Sbjct: 41 GIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILEKIDPSNGSTQALIVTPTR 100
Query: 149 ELGMQVTKVARVL 161
EL +Q+T + L
Sbjct: 101 ELALQITSEVKKL 113
>gi|403387302|ref|ZP_10929359.1| ATP-dependent RNA helicase [Clostridium sp. JC122]
Length = 367
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ + ++ + ++G PT IQ E++ + RD I AQTG+GKTL +LL +F ++
Sbjct: 8 INDDIINILKKSGITKPTPIQEESITFIKEGRDVIAEAQTGTGKTLAFLLPMFENISPSL 67
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAA 163
++VQ +IV PTREL +Q+T+ A L +
Sbjct: 68 NSVQGLIVTPTRELAIQITEEAMKLKS 94
>gi|334563107|ref|ZP_08516098.1| ATP-dependent RNA helicase [Corynebacterium bovis DSM 20582]
Length = 785
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE VLR + GY P+ IQ E +P+L D + AQTG+GKT + L + + ++ +
Sbjct: 143 LPERVLRAVTSVGYTEPSPIQAETIPLLMEGHDVVGLAQTGTGKTAAFALPVLAGIDPTQ 202
Query: 137 SAVQAVIVVPTRELGMQVTK 156
+ QA+++ PTREL +QV +
Sbjct: 203 RSTQALVLAPTRELALQVAE 222
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 17/127 (13%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ E ++ + E GYV PT IQ +A+P RD + AQTG+GKT + L
Sbjct: 1 MTFKEL---NLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTL 57
Query: 127 LIFSLVNAQ-----RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALL 181
I L++A+ R ++A+++ PTREL +Q+ + R A TDL H C +
Sbjct: 58 PILQLLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARY---TDLRH--CVIF--- 109
Query: 182 DGGMLRR 188
GG+ +R
Sbjct: 110 -GGVNQR 115
>gi|159467683|ref|XP_001692021.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278748|gb|EDP04511.1| predicted protein [Chlamydomonas reinhardtii]
Length = 598
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 84 RMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ--- 140
+++ G+ PT IQ+ LPVL S RD ++ AQTGSGKTL YLL I + + AQ+ +
Sbjct: 17 QLESLGFAAPTPIQKLVLPVLLSGRDALVKAQTGSGKTLCYLLPIINDLQAQQPRISRGE 76
Query: 141 ---AVIVVPTRELGMQV 154
A+I+ PTREL +QV
Sbjct: 77 GTYAIILAPTRELSIQV 93
>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
Length = 474
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%)
Query: 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKT 121
T S+T + H+ H+L+ + GY T IQ +LP++ + +D I A+TGSGKT
Sbjct: 7 TDEYSMTPKAFSSLHLKIHMLKNLASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKT 66
Query: 122 LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ + + S ++A S VQA+++ PTREL QV K R LA
Sbjct: 67 AAFGIGLLSHLDATSSRVQALVLCPTRELADQVGKELRRLA 107
>gi|388855958|emb|CCF50533.1| probable U5 snRNP 100 kD protein [Ustilago hordei]
Length = 691
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 58 LAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTG 117
++A GN LR + +P +L ++E GY P+ IQR+A+P+ +RD I A+TG
Sbjct: 253 ISARGGNIPKPLRSWRESSIPATILSTIEEIGYKEPSPIQRQAIPIGLQNRDLIGIAETG 312
Query: 118 SGKTLTYLLLIFSLV------NAQRSAV--QAVIVVPTRELGMQVTKVARVLAAK 164
SGKT ++L+ + + + N A+ QA+I+VPTREL Q+ A +
Sbjct: 313 SGKTASFLIPLLAYISKLPKLNEHTKALGPQALILVPTRELAQQIETETNKFAGR 367
>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase [Rhodothermus marinus DSM 4252]
gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
4252]
Length = 505
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%)
Query: 48 LSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS 107
L+ A ++ AA L E+ +PE + + G+ +QR LP L
Sbjct: 16 LTRRAQQKKQEAAAVQATGEPLPEVSLAELPERMQQAARAIGWTELMPVQRRTLPYLLEG 75
Query: 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
RD I+ +QTGSGKT +LL +F ++ R VQA+I+ PTREL Q+++
Sbjct: 76 RDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQALILTPTRELARQISE 124
>gi|428770509|ref|YP_007162299.1| DEAD/DEAH box helicase [Cyanobacterium aponinum PCC 10605]
gi|428684788|gb|AFZ54255.1| DEAD/DEAH box helicase domain protein [Cyanobacterium aponinum PCC
10605]
Length = 491
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++ ++++ G+V PT IQ A+P L S RD + +QTG+GKT Y L I ++
Sbjct: 12 ESLVNQLEKIGFVTPTKIQSLAIPELLSGRDVVGQSQTGTGKTAAYSLPILDSIDRSSKD 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAK 164
VQA+I+ PTREL QV + + A+
Sbjct: 72 VQALILTPTRELAQQVAESLKDFIAR 97
>gi|357406358|ref|YP_004918282.1| Cold-shock DEAD box protein A-like protein [Methylomicrobium
alcaliphilum 20Z]
gi|351719023|emb|CCE24697.1| Cold-shock DEAD box protein A homolog [Methylomicrobium
alcaliphilum 20Z]
Length = 578
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
T REL + E VL+ +D+ GY P+ IQ + +P L +D + AQTG+GKT + L
Sbjct: 10 TFRELT---LIEPVLKALDDVGYESPSPIQAQTIPYLMQGKDVLGQAQTGTGKTAAFALP 66
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
I S ++ +++ Q +++ PTREL +QV + + AA
Sbjct: 67 ILSRLDLKKTEPQVLVLAPTRELAIQVAEAFQRYAA 102
>gi|342882939|gb|EGU83503.1| hypothetical protein FOXB_05913 [Fusarium oxysporum Fo5176]
Length = 523
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 66 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKVSKIQCLILVP 125
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 126 TRELAMQTSQVCKTLG 141
>gi|374384142|ref|ZP_09641668.1| hypothetical protein HMPREF9449_00054 [Odoribacter laneus YIT
12061]
gi|373228749|gb|EHP51052.1| hypothetical protein HMPREF9449_00054 [Odoribacter laneus YIT
12061]
Length = 424
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNA 134
++ + +L + E G+ PT IQREA PV+ S +D I A+TG+GKTL YL+ ++ L A
Sbjct: 7 NISKQILDALAEAGFEEPTPIQREAFPVIRSGKDMIGIARTGTGKTLAYLIPILMKLHYA 66
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVL 161
Q +A+++VPTREL +QV + +L
Sbjct: 67 QGKYPRAIVIVPTRELVVQVCESVELL 93
>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
Length = 515
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++P ++ + +D+ GY +P+DIQ + +P L D I AQTG+GKT + L I + ++ +
Sbjct: 14 NLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAKIDCR 73
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
+ Q +++ PTREL +QV + + A H P +A + GG +++ LK
Sbjct: 74 KKQTQCLVLAPTRELAIQVAEAFQSYA--------RHLPGFQVAPIYGGT--DYRTQLKQ 123
Query: 196 L 196
L
Sbjct: 124 L 124
>gi|307109230|gb|EFN57468.1| hypothetical protein CHLNCDRAFT_56077 [Chlorella variabilis]
Length = 390
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 40 SWKPLRAVLSSSA-VSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTD 95
WK A+ A E++ A GN + REL G + E G+ P+
Sbjct: 15 DWKKSLALPPKDARYKTEDVTATKGNSFEDYFLKRELLMG---------IYEKGFENPSP 65
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
IQ E++P+ + RD + A+ G+GKT + + + V+ ++ VQA+++VPTREL +Q +
Sbjct: 66 IQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKVDTSKNEVQALLLVPTRELALQTS 125
Query: 156 KVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
+VA+ L +H VM G LR
Sbjct: 126 QVAKELG--------KHMAVEVMVSTGGTSLR 149
>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 620
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
N+ T +L ++PE +L + + G+ PT IQ +A+P+L RD + AQTG+GKT +
Sbjct: 3 NATTFADL---NLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAF 59
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170
L + + V+ VQA+++ PTREL +Q + AA+ D+
Sbjct: 60 ALPMLAHVDPNNRHVQALVLAPTRELALQGAEAINTFAARTGGLDV 105
>gi|71019395|ref|XP_759928.1| hypothetical protein UM03781.1 [Ustilago maydis 521]
gi|46099583|gb|EAK84816.1| hypothetical protein UM03781.1 [Ustilago maydis 521]
Length = 568
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 2 AAIAISATHTILVTRVNHKLSSPNSI-EFTNRAFLPVSISWKPLRAVLSSSAVSIEELAA 60
AA + S+ + L R + K S S+ + +R W+ R ++A
Sbjct: 213 AATSYSSRYDSLDKRFDDKHWSEKSLSQMKDR-------DWRIFREDFG--------ISA 257
Query: 61 GTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGK 120
GN LR + +P +L ++E GY P+ IQR+A+P+ +RD I A+TGSGK
Sbjct: 258 RGGNIPKPLRSWRESGIPASILSTIEEVGYKEPSPIQRQAIPIGLQNRDLIGIAETGSGK 317
Query: 121 TLTYLLLIFSLVNA--------QRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
T ++L+ + + ++ + QA+I+VPTREL Q+ A +
Sbjct: 318 TASFLIPLLAYISKLPKLDEHTKALGPQALILVPTRELAQQIETETNKFAGR 369
>gi|254975780|ref|ZP_05272252.1| ATP-dependent RNA helicase [Clostridium difficile QCD-66c26]
gi|255650694|ref|ZP_05397596.1| ATP-dependent RNA helicase [Clostridium difficile QCD-37x79]
gi|260687441|ref|YP_003218575.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|260213458|emb|CBE05139.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
Length = 497
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 52/76 (68%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + GY +P+ +QRE +P L ++ ++ ++TGSGKT+++ + + +N +
Sbjct: 12 EKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTVSFAIPLCENINVDCNN 71
Query: 139 VQAVIVVPTRELGMQV 154
+QA+IVVPTREL +QV
Sbjct: 72 IQALIVVPTRELALQV 87
>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
Length = 603
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E GY P+ IQ A+PV+ S RD I AQTG+GKT + L + S+++ +A+I+ P
Sbjct: 29 EIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSMLDPNEDGPKAIILAP 88
Query: 147 TRELGMQVTK 156
TREL +QV++
Sbjct: 89 TRELALQVSE 98
>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 369
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ +++ ++++G PT IQ++++P + +D I A TG+GKTL +LL + +N++ +
Sbjct: 10 DDLIKILNKSGIADPTPIQKQSIPKIRDGKDVIAEAATGTGKTLAFLLPLLENINSKSNE 69
Query: 139 VQAVIVVPTRELGMQVTKVARVL 161
+QA+I+ PTREL +Q+T A L
Sbjct: 70 IQALILTPTRELAIQITNEANKL 92
>gi|449664234|ref|XP_002161873.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Hydra
magnipapillata]
Length = 815
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 61 GTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGK 120
G G +RE + ++ +L +++ Y+ PT +Q+ A+P++ +RD + AQTGSGK
Sbjct: 362 GPGIIPSAIREFAEANIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGK 421
Query: 121 TLTYLLLIFSLVNAQRS----------AVQAVIVVPTRELGMQVTKVARVLAAKPS 166
T +L+ + + + RS A A+++ PTREL +Q+ K AR A S
Sbjct: 422 TAAFLIPVLNTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTS 477
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-----LIFSLVNA 134
+LR + E GYV PT +QR+A+PV+ +RD ++ AQTG+GKT + L L S
Sbjct: 11 ELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPL 70
Query: 135 QRSA---VQAVIVVPTRELGMQVTKVAR 159
QRSA ++A+I+ PTREL +QV + R
Sbjct: 71 QRSAKPVIRALILTPTRELAVQVFECVR 98
>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
Length = 797
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 61 GTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGK 120
G G +RE + ++ +L +++ Y+ PT +Q+ A+P++ +RD + AQTGSGK
Sbjct: 344 GPGIIPSAIREFAEANIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGK 403
Query: 121 TLTYLLLIFSLVNAQRS----------AVQAVIVVPTRELGMQVTKVARVLAAKPS 166
T +L+ + + + RS A A+++ PTREL +Q+ K AR A S
Sbjct: 404 TAAFLIPVLNTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTS 459
>gi|158293341|ref|XP_314700.4| AGAP008601-PA [Anopheles gambiae str. PEST]
gi|157016658|gb|EAA10183.4| AGAP008601-PA [Anopheles gambiae str. PEST]
Length = 611
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL----LIF 129
+G V +H ++ + E G+ T+IQ +++P L RD I A+TGSGKTL +L+ LI
Sbjct: 122 EGKVSDHTMKAIGEMGFTKMTEIQAKSIPPLLEGRDLIGSAKTGSGKTLAFLIPAVELIH 181
Query: 130 SLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
L R+ +++ PTREL MQ+ V + +L C LL GG R
Sbjct: 182 KLRFKPRNGAGVIVISPTRELAMQIFGVLK---------ELMTYHCQTYGLLMGGASR 230
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-----LIFSLVNA 134
+LR + E GYV PT +QR+A+PV+ +RD ++ AQTG+GKT + L L S
Sbjct: 20 ELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPL 79
Query: 135 QRSA---VQAVIVVPTRELGMQVTKVAR 159
QRSA ++A+I+ PTREL +QV + R
Sbjct: 80 QRSAKPVIRALILTPTRELAVQVFECVR 107
>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 464
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
N+L L E C L ++++ G+ PT+IQ +A+P L + RD + +QTG+GKT +
Sbjct: 6 NNLGLSEEC--------LHQLEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAF 57
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + ++ VQA+I+ PTREL QV R L +
Sbjct: 58 SLPMLEQIDPNARGVQALILAPTRELARQVADAIRDLTS 96
>gi|428781308|ref|YP_007173094.1| DNA/RNA helicase [Dactylococcopsis salina PCC 8305]
gi|428695587|gb|AFZ51737.1| DNA/RNA helicase, superfamily II [Dactylococcopsis salina PCC 8305]
Length = 467
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E ++++++ G+ PTD+Q +A+P L +D + +QTG+GKT + L + ++ + +
Sbjct: 12 EERVKQLEKLGFEQPTDVQSQAIPELLKGKDVVGQSQTGTGKTAAFSLPLLEQIDVEDTV 71
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQA+I+ PTREL QVT + +
Sbjct: 72 VQALILTPTRELAQQVTTAMKTFS 95
>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
italicus DSM 15952]
gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
italicus DSM 15952]
Length = 449
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
+ G+V PT++Q + +P++ + I +QTGSGKT T+LL +F V +++ VQ VI P
Sbjct: 18 DKGFVHPTEVQEKLIPIISKGKSLIGQSQTGSGKTHTFLLPLFDKVQPEKNEVQVVICAP 77
Query: 147 TRELGMQVTKVARVLAA 163
+REL Q+ + A+ LA+
Sbjct: 78 SRELASQIYQEAKQLAS 94
>gi|298401349|gb|ADI81994.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401351|gb|ADI81995.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401353|gb|ADI81996.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401355|gb|ADI81997.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401357|gb|ADI81998.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401359|gb|ADI81999.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401361|gb|ADI82000.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401363|gb|ADI82001.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401365|gb|ADI82002.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401367|gb|ADI82003.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401369|gb|ADI82004.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401371|gb|ADI82005.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401373|gb|ADI82006.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401375|gb|ADI82007.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401377|gb|ADI82008.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401379|gb|ADI82009.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401381|gb|ADI82010.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401383|gb|ADI82011.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401385|gb|ADI82012.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401387|gb|ADI82013.1| dead box polypeptide 5 [Heliconius melpomene melpomene]
gi|298401429|gb|ADI82034.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401431|gb|ADI82035.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401433|gb|ADI82036.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401435|gb|ADI82037.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401437|gb|ADI82038.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401439|gb|ADI82039.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401441|gb|ADI82040.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401443|gb|ADI82041.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401445|gb|ADI82042.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401447|gb|ADI82043.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401449|gb|ADI82044.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401451|gb|ADI82045.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401453|gb|ADI82046.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401455|gb|ADI82047.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401457|gb|ADI82048.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401459|gb|ADI82049.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401461|gb|ADI82050.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401463|gb|ADI82051.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401465|gb|ADI82052.1| dead box polypeptide 5 [Heliconius cydno cordula]
gi|298401467|gb|ADI82053.1| dead box polypeptide 5 [Heliconius cydno cordula]
Length = 238
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLV 132
+G+ P+H++ + E G+ PT IQ + P+ S RD + A TGSGKTL Y+L +V
Sbjct: 14 EGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHIV 73
Query: 133 NAQR----SAVQAVIVVPTRELGMQVTKVARVLAA 163
+ QR A+I+ PTREL Q+ VA+ +A
Sbjct: 74 HQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSA 108
>gi|205374127|ref|ZP_03226927.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
Length = 393
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAV 142
+ +++ GY PT+IQ+ +P+ + I +QTG+GKTL YLL I +N + VQAV
Sbjct: 17 KAIEKAGYKEPTEIQQLIIPIALNGDSAIGQSQTGTGKTLAYLLPILESINPNKDEVQAV 76
Query: 143 IVVPTRELGMQVTKVARVLA 162
I PTREL Q+ A LA
Sbjct: 77 ITAPTRELAQQIFTEAMKLA 96
>gi|313890658|ref|ZP_07824285.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852751|ref|ZP_11909896.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120969|gb|EFR44081.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
pseudoporcinus SPIN 20026]
gi|356740240|gb|EHI65472.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
Length = 447
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 57/88 (64%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ +++ + ++E + PT++Q++ +PV+ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 NFKDYIQKALEEINFREPTEVQKKLIPVVNSGRDLVGESKTGSGKTHTFLLPIFEKLDED 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
VQ +I P+REL Q+ + A+ +A+
Sbjct: 67 SRDVQVLITAPSRELATQIFEAAKQIAS 94
>gi|407923844|gb|EKG16907.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 504
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 40 SWKP-LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQR 98
WK L+A + V E++ A G E ++ ++ + E G+ P+ IQ
Sbjct: 20 DWKNGLKAPPKDNRVQTEDVTATKG------LEFEDFYIKRELMMGIFEAGFEKPSPIQE 73
Query: 99 EALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
E +PV + RD + A+ G+GKT +++ +N + + QA+I+VPTREL +Q ++V
Sbjct: 74 ETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVC 133
Query: 159 RVLA 162
+ L
Sbjct: 134 KTLG 137
>gi|345858122|ref|ZP_08810531.1| DEAD/DEAH box helicase family protein [Desulfosporosinus sp. OT]
gi|344328789|gb|EGW40158.1| DEAD/DEAH box helicase family protein [Desulfosporosinus sp. OT]
Length = 389
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ E ++ + + G PT IQ + +P++ +RD + ++TG+GKTL YLL IF ++ Q
Sbjct: 9 ELDEALVAALKQEGITNPTAIQEQTIPLILGNRDVVGQSETGTGKTLAYLLPIFQKIDTQ 68
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVL 161
+ QA+I+ PT EL +Q+ + +L
Sbjct: 69 KRETQALILTPTHELAIQIQRAIELL 94
>gi|224071778|ref|XP_002303572.1| predicted protein [Populus trichocarpa]
gi|222841004|gb|EEE78551.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 13/93 (13%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN--- 133
+P ++ R++ G+ +PTD+Q A+P + + D ++ + TGSGKTL Y+L I S V
Sbjct: 121 LPPPLIERLEREGFNVPTDVQSAAIPTILKNHDAVIQSYTGSGKTLAYVLPILSEVGPLK 180
Query: 134 ----------AQRSAVQAVIVVPTRELGMQVTK 156
+++ ++AV+V P+REL MQ+ +
Sbjct: 181 NNYSSADKETGKKTEIEAVVVAPSRELAMQIVR 213
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN-AQRSA 138
VL+ +++ G+ P+ IQ EA+PVL + D I AQTG+GKTL + ++ S + +QR
Sbjct: 14 EVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKITPSQRKL 73
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL MQ+
Sbjct: 74 PQAIILSPTRELAMQI 89
>gi|330718297|ref|ZP_08312897.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
Length = 448
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ PT +Q + +P + RD + +QTGSGKT T+L+ IF+ + + VQAVI P+R
Sbjct: 22 GFTQPTPVQLKLIPDILKGRDVVGQSQTGSGKTHTFLIPIFNRIVFDANEVQAVITTPSR 81
Query: 149 ELGMQVTKVARVLAAK 164
EL Q+T+ A+ LA +
Sbjct: 82 ELADQITRAAKALAEQ 97
>gi|261887955|gb|ACY05460.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887957|gb|ACY05461.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887959|gb|ACY05462.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887961|gb|ACY05463.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887963|gb|ACY05464.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887965|gb|ACY05465.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887967|gb|ACY05466.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887969|gb|ACY05467.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887971|gb|ACY05468.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887973|gb|ACY05469.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887975|gb|ACY05470.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887977|gb|ACY05471.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887979|gb|ACY05472.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887981|gb|ACY05473.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887983|gb|ACY05474.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene
melpomene]
gi|261887985|gb|ACY05475.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887987|gb|ACY05476.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887989|gb|ACY05477.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887991|gb|ACY05478.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887993|gb|ACY05479.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887995|gb|ACY05480.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887997|gb|ACY05481.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261887999|gb|ACY05482.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261888001|gb|ACY05483.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261888003|gb|ACY05484.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261888005|gb|ACY05485.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261888007|gb|ACY05486.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
gi|261888009|gb|ACY05487.1| DEAD box ATP-dependent RNA helicase [Heliconius melpomene rosina]
Length = 224
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLV 132
+G+ P+H++ + E G+ PT IQ + P+ S RD + A TGSGKTL Y+L +V
Sbjct: 10 EGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHIV 69
Query: 133 NAQR----SAVQAVIVVPTRELGMQVTKVARVLAA 163
+ QR A+I+ PTREL Q+ VA+ +A
Sbjct: 70 HQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSA 104
>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 447
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+PV+ S +D I A+TG+GKTL ++L I ++ + V
Sbjct: 15 HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECGDV 71
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 72 QALIVAPTRELALQIT 87
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + + G+ P+ IQ E +P+L RD + AQTG+GKT + L + S ++ +
Sbjct: 62 LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTKA 121
Query: 137 SAVQAVIVVPTRELGMQV 154
QA+++ PTREL +QV
Sbjct: 122 RHPQALVLAPTRELALQV 139
>gi|170017592|ref|YP_001728511.1| superfamily II DNA/RNA helicase [Leuconostoc citreum KM20]
gi|414596958|ref|ZP_11446530.1| ATP-dependent RNA helicase [Leuconostoc citreum LBAE E16]
gi|421877123|ref|ZP_16308673.1| DEAD/DEAH box family ATP-dependent RNA helicase [Leuconostoc
citreum LBAE C10]
gi|421878886|ref|ZP_16310362.1| ATP-dependent RNA helicase [Leuconostoc citreum LBAE C11]
gi|169804449|gb|ACA83067.1| Superfamily II DNA and RNA helicase [Leuconostoc citreum KM20]
gi|372557069|emb|CCF24793.1| DEAD/DEAH box family ATP-dependent RNA helicase [Leuconostoc
citreum LBAE C10]
gi|390447189|emb|CCF26482.1| ATP-dependent RNA helicase [Leuconostoc citreum LBAE C11]
gi|390482322|emb|CCF28591.1| ATP-dependent RNA helicase [Leuconostoc citreum LBAE E16]
Length = 454
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ Q ++ ++ + G++ PT +Q + +P + D + +QTGSGKT T+L+ I +
Sbjct: 7 QFGQFNLKSDIISALTAIGFIQPTAVQAKLIPAVLQGHDVVGQSQTGSGKTHTFLIPIIN 66
Query: 131 LVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164
+ ++ VQAVI P+REL Q+TK A+ A K
Sbjct: 67 QLEQGKNYVQAVITTPSRELAAQITKAAKQFADK 100
>gi|302810783|ref|XP_002987082.1| hypothetical protein SELMODRAFT_43111 [Selaginella moellendorffii]
gi|300145247|gb|EFJ11925.1| hypothetical protein SELMODRAFT_43111 [Selaginella moellendorffii]
Length = 462
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA------ 134
+++++DE PT +Q A+PVL D + + TGSGKTL YLL I S +
Sbjct: 36 LVQKLDEMNLTSPTQVQASAIPVLLDGHDAAMQSYTGSGKTLAYLLPILSTIGPFADAGG 95
Query: 135 -----QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRH 189
+ A+ AVIV P+REL MQ+ + A L EH+ V L+ G L+R
Sbjct: 96 DESARKTGAIDAVIVAPSRELAMQIVREAEKLLGD------EHRRL-VQQLIGGANLKRQ 148
Query: 190 KSWLK 194
LK
Sbjct: 149 AEALK 153
>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
Length = 460
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++P +L +D GY T IQ EALP + + +D I +TGSGKT + L + S + +
Sbjct: 10 NLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSLGVLSNLRVK 69
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
R VQ++++ PTREL QV K R LA
Sbjct: 70 RFRVQSLVLCPTRELADQVAKEIRTLA 96
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ VL+ + E G+ P+ IQ+EA+P+ D I AQTG+GKT + + I VN + A
Sbjct: 15 KQVLQSLSEMGFEEPSPIQKEAIPLALEGVDLIGQAQTGTGKTAAFGIPIIEKVNPKFQA 74
Query: 139 VQAVIVVPTRELGMQVTK 156
VQA+I+ PTREL +QV++
Sbjct: 75 VQAIILSPTRELAVQVSE 92
>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
Length = 497
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + GY +P+ +QRE +P L ++ ++ ++TGSGKT ++ + + +N +
Sbjct: 12 EKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNN 71
Query: 139 VQAVIVVPTRELGMQV 154
+QA+IVVPTREL +QV
Sbjct: 72 IQALIVVPTRELALQV 87
>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 619
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
NSLT +L +P+ +L +++ G+V P+ IQ+E +P L + RD + AQTGSGKT +
Sbjct: 4 NSLTFADL---GLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAF 60
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + ++ + Q +++ PTREL +QV
Sbjct: 61 SLPLLAQIDPTKRHPQMLVMAPTRELAIQV 90
>gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703]
gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
Length = 452
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR ++E GY PT +QR+A+PV+ RD + AQTG+GKT + L + L+N
Sbjct: 12 ILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNDNPPQAK 71
Query: 136 -RSAVQAVIVVPTRELGMQV 154
R V+A+I+ PTREL Q+
Sbjct: 72 GRRPVRALILTPTRELAAQI 91
>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Acyrthosiphon pisum]
Length = 718
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
+G+ PE V++ + + G+ PT IQ + P+ S RD + AQTGSGKTL Y+L ++
Sbjct: 111 EGNFPESVVQELKKQGFSEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAAVHIS 170
Query: 134 AQRSAVQ-----AVIVVPTRELGMQVTKVARVLAAKPSDT 168
Q + A+++ PTREL Q+ VA++ ++ +T
Sbjct: 171 NQEPLQRGDGPIALVLAPTRELAQQIQSVAKMFSSSIRNT 210
>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 481
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E + R +D GY PT++Q E +PV RD ++ +QTGSGKT Y + + V +
Sbjct: 13 EEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLCEQVEWNENK 72
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+I+ PTREL +QV +
Sbjct: 73 PQALILTPTRELALQVNE 90
>gi|281490952|ref|YP_003352932.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis KF147]
gi|281374710|gb|ADA64230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. lactis KF147]
Length = 446
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + ++ + PT++Q +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 10 DYINQTLENIKFEKPTEVQENLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDE 69
Query: 139 VQAVIVVPTRELGMQVTKVAR 159
VQAVI P+REL Q+ K A+
Sbjct: 70 VQAVITAPSRELATQIYKAAQ 90
>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 583
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ +L+ ++E G+ P+ +Q EA+P++ D + AQTG+GKT + L S+++A ++
Sbjct: 11 QDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMSMIDANQNR 70
Query: 139 VQAVIVVPTRELGMQVT 155
VQ +++ PTREL QV+
Sbjct: 71 VQLLVITPTRELATQVS 87
>gi|164425692|ref|XP_960011.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
gi|161789041|sp|Q7S5D9.2|DHH1_NEUCR RecName: Full=ATP-dependent RNA helicase dhh-1
gi|157071024|gb|EAA30775.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
Length = 505
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ + +N + S +Q +I+VP
Sbjct: 62 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVP 121
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 122 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTGLR 154
>gi|407692430|ref|YP_006817219.1| cold-shock DEAD box protein A-like protein [Actinobacillus suis
H91-0380]
gi|407388487|gb|AFU18980.1| cold-shock DEAD box protein A-like protein [Actinobacillus suis
H91-0380]
Length = 619
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
NSLT +L +P+ +L ++E G+V P+ IQ+E +P L + RD + AQTGSGKT +
Sbjct: 4 NSLTFADL---GLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAF 60
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + ++ + Q +++ PTREL +QV
Sbjct: 61 SLPLLAQIDPAQRHPQMLVMAPTRELAIQV 90
>gi|403057992|ref|YP_006646209.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402805318|gb|AFR02956.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 470
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR +DE GY PT +QR+A+PV+ RD + AQTG+GKT + L + L+ ++
Sbjct: 12 ILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQHK 71
Query: 136 ---RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 72 GKGRRPVRALILTPTRELAAQIDE 95
>gi|367036228|ref|XP_003667396.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
gi|347014669|gb|AEO62151.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA- 134
++ E ++ +DE G+ T+IQR +P L + +D + A+TGSGKTL +L+ +++A
Sbjct: 121 NLSEKTMKAIDEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLSAL 180
Query: 135 ---QRSAVQAVIVVPTRELGMQVTKVARVL 161
R+ A++V PTREL +Q+ VAR L
Sbjct: 181 RFKPRNGTGAIVVTPTRELALQIFGVAREL 210
>gi|255524804|ref|ZP_05391754.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|296188659|ref|ZP_06857047.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
gi|255511471|gb|EET87761.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|296046923|gb|EFG86369.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
Length = 382
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E + + + G T+IQ EA+P ++D + A+TGSGKTL YL IF ++
Sbjct: 11 INEKITEGLKKEGIEYATEIQVEAIPQAILNKDIVGEAETGSGKTLAYLAPIFQNIDTNS 70
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
AVQA I+ PT EL +QV V + LA
Sbjct: 71 KAVQAFILTPTHELAIQVNDVIKTLA 96
>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 471
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----- 135
+LR +DE GY PT +QR+A+PV+ RD + AQTG+GKT + L + L+ ++
Sbjct: 12 ILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQHK 71
Query: 136 ---RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 72 GKGRRPVRALILTPTRELAAQIDE 95
>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
Length = 497
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + GY +P+ +QRE +P L ++ ++ ++TGSGKT ++ + + +N +
Sbjct: 12 EKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNN 71
Query: 139 VQAVIVVPTRELGMQV 154
+QA+IVVPTREL +QV
Sbjct: 72 IQALIVVPTRELALQV 87
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P+ +L+ + + G+ P+ IQ E +P+L RD + AQTG+GKT + L + S ++ Q
Sbjct: 62 LPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQLDPQA 121
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
QA+++ PTREL +QV + A
Sbjct: 122 RHPQALVLAPTRELALQVADAFQSFA 147
>gi|414591046|tpg|DAA41617.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 414
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 54 SIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILH 113
S EEL + G +S +++ + + G+ PT IQR+A+P+L S R+C
Sbjct: 144 SFEELISRYGCDS-------------YLVGNLSKLGFQEPTPIQRQAMPILLSGRECFAC 190
Query: 114 AQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKTL +L L+ + + V+AVI+ PTREL Q + + L
Sbjct: 191 APTGSGKTLAFLFPLLMKIKPGSKGGVKAVILCPTRELAAQTVRECKKL 239
>gi|410995863|gb|AFV97328.1| ATP-dependent RNA helicase DbpA [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 450
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ L+R++ + T IQ +LPV+ +DCI A TGSGKTL + L + + +N +
Sbjct: 14 KEALKRLE---FTTMTPIQSTSLPVILDKKDCIAQAATGSGKTLAFGLGVLNPINPKSFG 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAK 164
+Q++I+ PTREL QV KV R LA++
Sbjct: 71 IQSLILCPTRELAEQVAKVLRSLASE 96
>gi|349602917|gb|AEP98907.1| putative ATP-dependent RNA helicase DDX46-like protein, partial
[Equus caballus]
Length = 667
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 6 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 65
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR + AVI+ PTREL +Q+TK
Sbjct: 66 FRHIMDQRPLEEGEGPIAVIMTPTRELALQITK 98
>gi|389579132|ref|ZP_10169159.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389400767|gb|EIM62989.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 422
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPT 147
GY LPT IQ+EA+P + RD + AQTG+GKT ++L L+ L+N R V+A+IV PT
Sbjct: 20 GYTLPTPIQKEAIPPILEGRDILGLAQTGTGKTAAFVLPLLQRLLNGPRKKVRALIVAPT 79
Query: 148 RELGMQV 154
REL Q+
Sbjct: 80 RELAEQI 86
>gi|336467195|gb|EGO55359.1| hypothetical protein NEUTE1DRAFT_46597 [Neurospora tetrasperma FGSC
2508]
gi|350288179|gb|EGZ69415.1| ATP-dependent RNA helicase dhh-1 [Neurospora tetrasperma FGSC 2509]
Length = 507
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ + +N + S +Q +I+VP
Sbjct: 62 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVP 121
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 122 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTGLR 154
>gi|302771716|ref|XP_002969276.1| hypothetical protein SELMODRAFT_410231 [Selaginella moellendorffii]
gi|300162752|gb|EFJ29364.1| hypothetical protein SELMODRAFT_410231 [Selaginella moellendorffii]
Length = 449
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSA 138
++++ + E GY PT +QR+ +PVL R+C + A TGSGK+L ++L ++ L +
Sbjct: 85 NLMKNLVEAGYKEPTPVQRQVIPVLLQERECFVCAPTGSGKSLAFILPILMKLKKSSPDG 144
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
++AVI+ PTREL Q+ R LA
Sbjct: 145 IRAVILCPTRELAAQLITECRRLA 168
>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile 630]
Length = 497
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + GY +P+ +QRE +P L ++ ++ ++TGSGKT ++ + + +N +
Sbjct: 12 EKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNN 71
Query: 139 VQAVIVVPTRELGMQV 154
+QA+IVVPTREL +QV
Sbjct: 72 IQALIVVPTRELALQV 87
>gi|340518916|gb|EGR49156.1| hypothetical protein TRIREDRAFT_106962 [Trichoderma reesei QM6a]
Length = 526
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 66 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKISKIQCLILVP 125
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 126 TRELAMQTSQVCKTLG--------KHLGVNVMVTTGGTGLR 158
>gi|6689612|emb|CAB65518.1| ATP-dependent RNA helicase [Yarrowia lipolytica]
Length = 523
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 10/103 (9%)
Query: 61 GTGNNSLTL-RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSG 119
GTG L REL G + E G+ P+ IQ EA+P+ + RD + A+ G+G
Sbjct: 27 GTGFEDFFLKRELLMG---------IFEAGFENPSPIQEEAIPIALAGRDILARAKNGTG 77
Query: 120 KTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
KT +++ VN + + +QA+I+VPTREL +Q ++V + L
Sbjct: 78 KTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLG 120
>gi|50556564|ref|XP_505690.1| YALI0F21032p [Yarrowia lipolytica]
gi|74659647|sp|Q6C0X2.1|DHH1_YARLI RecName: Full=ATP-dependent RNA helicase DHH1
gi|49651560|emb|CAG78499.1| YALI0F21032p [Yarrowia lipolytica CLIB122]
Length = 522
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 10/103 (9%)
Query: 61 GTGNNSLTL-RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSG 119
GTG L REL G + E G+ P+ IQ EA+P+ + RD + A+ G+G
Sbjct: 27 GTGFEDFFLKRELLMG---------IFEAGFENPSPIQEEAIPIALAGRDILARAKNGTG 77
Query: 120 KTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
KT +++ VN + + +QA+I+VPTREL +Q ++V + L
Sbjct: 78 KTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLG 120
>gi|410456811|ref|ZP_11310665.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
gi|409927363|gb|EKN64500.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
Length = 450
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E V+ ++ G PT IQ +A+P + + D I AQTG+GKT ++L I ++
Sbjct: 9 ISETVVNQLRGYGVAKPTPIQEQAIPFVMNGNDIIAQAQTGTGKTFAFILPILEKIDKDA 68
Query: 137 SAVQAVIVVPTRELGMQVT-KVARVLAAKPS 166
+ +QA+IV PTREL +Q+T ++ +++A P
Sbjct: 69 AHIQALIVTPTRELALQITAEIEKLIADLPG 99
>gi|374605632|ref|ZP_09678552.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
dendritiformis C454]
gi|374388749|gb|EHQ60151.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
dendritiformis C454]
Length = 427
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E +L ++ P+ +Q EA+P RD + +QTG+GKTL YLL + ++A
Sbjct: 12 ITEELLAKLQAKDITAPSPVQAEAIPAALEGRDILAQSQTGTGKTLAYLLPVLMKIDASY 71
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
QAV++ PT+EL MQ+ + A E V AL+ G L R L+
Sbjct: 72 RGTQAVVIAPTQELAMQIVREAEYYG--------EGSGIHVAALIGGAALNRQVERLR 121
>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
Length = 458
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+D GY T IQ++ALP++ + +D I +TGSGKT T+ L + S +N R VQ +++
Sbjct: 18 LDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVSRFRVQTLVL 77
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL QV K R LA
Sbjct: 78 CPTRELADQVAKEIRTLA 95
>gi|345860075|ref|ZP_08812402.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
gi|344326819|gb|EGW38270.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
Length = 536
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ +L+ + E G+ P+ IQ+EA+P + D I AQTG+GKT + + I VN + A
Sbjct: 16 KQILQALSEMGFEEPSPIQKEAIPYALEAVDLIGQAQTGTGKTAAFSIPIAEKVNPKFLA 75
Query: 139 VQAVIVVPTRELGMQVT----KVARVLAAKP 165
VQA+IV PTREL +QV+ K+ + KP
Sbjct: 76 VQAIIVTPTRELAIQVSEEIAKIGKYRHVKP 106
>gi|440640348|gb|ELR10267.1| ATP-dependent RNA helicase DDX6/DHH1 [Geomyces destructans
20631-21]
Length = 536
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 22 SSPNSIEFTNRAFLPVSISWKPLRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHV 81
SS N ++ + +P + + V ++ + EE + R+L G
Sbjct: 16 SSQNDPDWKKKLKIPAKDNRQQTEDVTATKGLEFEEFS--------IKRDLLMG------ 61
Query: 82 LRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA 141
+ E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q
Sbjct: 62 ---IFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKSSKIQC 118
Query: 142 VIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
+I+VPTREL +Q ++V + L +H VM G LR
Sbjct: 119 LILVPTRELALQTSQVCKTLG--------KHLGVNVMVTTGGTGLR 156
>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 610
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKT 121
T +N +T +L + E VL+ + + GY P+ IQ +P L +D + AQTG+GKT
Sbjct: 10 TDDNPITFADL---QIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKT 66
Query: 122 LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
+ + I S ++ R QA+I+ PTREL +QV +
Sbjct: 67 AAFAIPILSRLDVDRKVPQALILAPTRELALQVAE 101
>gi|302900149|ref|XP_003048204.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729136|gb|EEU42491.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 487
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 66 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKVSKIQCLILVP 125
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 126 TRELAMQTSQVCKTLG--------KHLGVNVMVTTGGTGLR 158
>gi|298401389|gb|ADI82014.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401391|gb|ADI82015.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401393|gb|ADI82016.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401395|gb|ADI82017.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401397|gb|ADI82018.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401399|gb|ADI82019.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401401|gb|ADI82020.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401403|gb|ADI82021.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401405|gb|ADI82022.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401407|gb|ADI82023.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401409|gb|ADI82024.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401411|gb|ADI82025.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401413|gb|ADI82026.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401415|gb|ADI82027.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401417|gb|ADI82028.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401419|gb|ADI82029.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401421|gb|ADI82030.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401423|gb|ADI82031.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401425|gb|ADI82032.1| dead box polypeptide 5 [Heliconius heurippa]
gi|298401427|gb|ADI82033.1| dead box polypeptide 5 [Heliconius heurippa]
Length = 238
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLV 132
+G+ P+H++ + E G+ PT IQ + P+ S RD + A TGSGKTL Y+L +V
Sbjct: 14 EGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYILPAAVHIV 73
Query: 133 NAQR----SAVQAVIVVPTRELGMQVTKVARVLAA 163
+ QR A+I+ PTREL Q+ VA+ +A
Sbjct: 74 HQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSA 108
>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
Length = 715
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P+ V++ ++ G+ P+ IQ + +PVL D + AQTG+GKT + L I SL++A+
Sbjct: 86 LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAEI 145
Query: 137 SAVQAVIVVPTRELGMQVTKVARVL 161
QA+I+ PTREL +QV +V
Sbjct: 146 RHPQALILAPTRELALQVADSFQVF 170
>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
Length = 607
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
NSLT +L +P+ +L ++E G+V P+ IQ+E +P L + RD + AQTGSGKT +
Sbjct: 4 NSLTFADL---GLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAF 60
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L + + ++ + Q +++ PTREL +QV
Sbjct: 61 SLPLLAQIDPTQHHPQMLVMAPTRELAIQV 90
>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 619
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 63 GNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTL 122
G +L EL + +++++ ++E G+ T IQ A+PV+ S RD I AQTG+GKT
Sbjct: 64 GMQTLKFSEL---PISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTA 120
Query: 123 TYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ + VNA+ Q +I+ PTREL +QV + +LA
Sbjct: 121 AFGIPAIEHVNAEDRNTQVLILCPTRELALQVKEQLTLLA 160
>gi|291566695|dbj|BAI88967.1| ATP-dependent RNA helicase [Arthrospira platensis NIES-39]
Length = 484
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E R ++ G+ PT +Q +A+P + S RD + AQTG+GKT + L I ++
Sbjct: 29 ISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVHA 88
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
+ +QA+++ PTREL MQV + R +
Sbjct: 89 AGIQALVLTPTRELAMQVKEAIRTFS 114
>gi|281365720|ref|NP_729194.2| CG10077, isoform C [Drosophila melanogaster]
gi|272455065|gb|AAN12065.2| CG10077, isoform C [Drosophila melanogaster]
Length = 472
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ + E +N +T++ E +G P++V+ + + G+
Sbjct: 122 YKPCDSVLARTVGETETFLT---SNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFA 178
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ-----RSAVQAVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q A+++ P
Sbjct: 179 KPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 238
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 239 TRELAQQIQQVA 250
>gi|440229962|ref|YP_007343755.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440051667|gb|AGB81570.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 455
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ---- 135
+LR ++E GY PT IQR+A+PV+ RD + AQTG+GKT + L + L++++
Sbjct: 11 EILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQLLSSKPSPV 70
Query: 136 --RSAVQAVIVVPTRELGMQVTK 156
R V+A+I+ PTREL Q+ +
Sbjct: 71 KGRRPVRALILTPTRELAAQIGE 93
>gi|365832932|ref|ZP_09374458.1| hypothetical protein HMPREF1021_03222 [Coprobacillus sp. 3_3_56FAA]
gi|365259765|gb|EHM89748.1| hypothetical protein HMPREF1021_03222 [Coprobacillus sp. 3_3_56FAA]
Length = 297
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN-AQRSA 138
VL+ +++ G+ P+ IQ EA+PVL + D I AQTG+GKTL + ++ S + +QR
Sbjct: 14 EVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKITPSQRKL 73
Query: 139 VQAVIVVPTRELGMQV 154
QA+I+ PTREL MQ+
Sbjct: 74 PQAIILSPTRELAMQI 89
>gi|354564822|ref|ZP_08983998.1| DEAD/DEAH box helicase domain protein [Fischerella sp. JSC-11]
gi|353549948|gb|EHC19387.1| DEAD/DEAH box helicase domain protein [Fischerella sp. JSC-11]
Length = 516
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+L+ +EL G PE + ++++ G+ PT+IQ +A+P L + RD + +QTG+GKT +
Sbjct: 2 TLSFQEL--GISPERI-EQIEKIGFTTPTNIQAQAIPQLLAGRDVVGQSQTGTGKTAAFS 58
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
L I ++ + VQA+++ PTREL +QV
Sbjct: 59 LPILERLDVSQKVVQALVLTPTRELAIQV 87
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+T ++L ++PE +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT +
Sbjct: 6 DMTFKDL---NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFA 62
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + + ++ ++ Q +++ PTREL +QV + +V A+
Sbjct: 63 LPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|335430691|ref|ZP_08557579.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
gi|335430711|ref|ZP_08557598.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
gi|334887522|gb|EGM25849.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
gi|334887717|gb|EGM26039.1| DEAD-box ATP dependent DNA helicase [Haloplasma contractile
SSD-17B]
Length = 383
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+++ +++ +PT+IQ + +PV ++D I +QTGSGKTL YLL I+ V+A + Q
Sbjct: 14 LVKGLEKQNIQIPTEIQDKVIPVALENKDLIGRSQTGSGKTLAYLLPIYEKVDAGKRENQ 73
Query: 141 AVIVVPTRELGMQVTKVARVLA 162
A+I+ PT EL +QV ++L+
Sbjct: 74 AIILTPTAELAVQVENQIKLLS 95
>gi|427785455|gb|JAA58179.1| Putative atp-dependent rna helicase ddx23 [Rhipicephalus
pulchellus]
Length = 788
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 13/106 (12%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
LR+ + ++P +L + E GY PT IQR+A+P+ +RD I A+TGSGKTL +LL +
Sbjct: 359 LRKWSECNLPTAILDVIKELGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 418
Query: 129 FSLVNA------QRSAVQ---AVIVVPTRELGMQV----TKVARVL 161
+ + Q A Q A+I+ PTREL Q+ TK A++L
Sbjct: 419 LVWITSLPKIERQEDADQGPYAIIMAPTRELAQQIDEETTKFAKML 464
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+T ++L ++PE +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT +
Sbjct: 6 DMTFKDL---NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFA 62
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + + ++ ++ Q +++ PTREL +QV + +V A+
Sbjct: 63 LPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|395326045|gb|EJF58459.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 579
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA- 134
H+P H+L+++ + GY PT IQ +P+L RD + TG+GKTL+YLL + + + A
Sbjct: 134 HLPSHLLQKLAQHGYKRPTGIQSHGIPILMERRDLAAISPTGTGKTLSYLLPVMAALGAP 193
Query: 135 -------QRSAVQAVIVVPTRELGMQV 154
S V+AVI+ PTREL Q+
Sbjct: 194 AASSKSDAGSGVRAVILAPTRELAHQI 220
>gi|357620336|gb|EHJ72566.1| DEAD box polypeptide 5 [Danaus plexippus]
Length = 592
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 11/129 (8%)
Query: 41 WKPLRAVLSSSAVSIEE------LAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPT 94
+ P +VL+ S +EE ++ + ++ +G+ P++V++ + GY PT
Sbjct: 120 YNPPPSVLNRSPYEVEEYRNKHEVSVSGADVPNPIQHFEEGNFPDYVMKSISSMGYNEPT 179
Query: 95 DIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVPTRE 149
IQ + P+ S ++ + AQTGSGKTL Y+L +N Q+ + A+++ PTRE
Sbjct: 180 PIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAIVHINNQQPVRRGDGPVALVLAPTRE 239
Query: 150 LGMQVTKVA 158
L Q+ +VA
Sbjct: 240 LAQQIQQVA 248
>gi|386775346|ref|ZP_10097724.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 633
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P + R +DE G+ P+ IQ +A+P L RD I AQTG+GKT + L + + V+
Sbjct: 58 LPAPLRRAVDELGFTTPSAIQAQAIPSLLEGRDVIGVAQTGTGKTAAFGLPLLAAVDPSV 117
Query: 137 SAVQAVIVVPTRELGMQV 154
VQA+++ PTREL MQV
Sbjct: 118 REVQALVLAPTRELAMQV 135
>gi|409990969|ref|ZP_11274276.1| DEAD/DEAH box helicase [Arthrospira platensis str. Paraca]
gi|409938168|gb|EKN79525.1| DEAD/DEAH box helicase [Arthrospira platensis str. Paraca]
Length = 465
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E R ++ G+ PT +Q +A+P + S RD + AQTG+GKT + L I ++
Sbjct: 10 ISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVHA 69
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
+ +QA+++ PTREL MQV + R +
Sbjct: 70 AGIQALVLTPTRELAMQVKEAIRTFS 95
>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
Length = 945
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
+ +P HV+ M G+ PT IQ + P+ S RD + AQTGSGKTL Y+L +
Sbjct: 241 ESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG 300
Query: 134 AQRSAVQ-----AVIVVPTRELGMQVTKVAR 159
Q ++ A+++ PTREL Q+ V R
Sbjct: 301 NQPPIIRGEGPIALVLAPTRELAQQIQSVVR 331
>gi|358385846|gb|EHK23442.1| hypothetical protein TRIVIDRAFT_147252 [Trichoderma virens Gv29-8]
Length = 490
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 66 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKVSKIQCLILVP 125
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 126 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTGLR 158
>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
Length = 800
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
+ +P HV+ M G+ PT IQ + P+ S RD + AQTGSGKTL Y+L +
Sbjct: 242 ESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG 301
Query: 134 AQRSAVQ-----AVIVVPTRELGMQVTKVAR 159
Q ++ A+++ PTREL Q+ V R
Sbjct: 302 NQPPIIRGEGPIALVLAPTRELAQQIQSVVR 332
>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
Length = 946
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
+ +P HV+ M G+ PT IQ + P+ S RD + AQTGSGKTL Y+L +
Sbjct: 242 ESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG 301
Query: 134 AQRSAVQ-----AVIVVPTRELGMQVTKVAR 159
Q ++ A+++ PTREL Q+ V R
Sbjct: 302 NQPPIIRGEGPIALVLAPTRELAQQIQSVVR 332
>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
Length = 681
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV-----NAQ 135
++ + ++GY +PT IQ+ A+PV+ + RD + AQTGSGKT ++LL I S + + +
Sbjct: 276 IVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIISKLLDDPQDLE 335
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
QAVIV PTREL +Q+ AR A
Sbjct: 336 FGRPQAVIVSPTRELAIQIFDEARKFA 362
>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
Length = 955
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
+ +P HV+ M G+ PT IQ + P+ S RD + AQTGSGKTL Y+L +
Sbjct: 245 ESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG 304
Query: 134 AQRSAVQ-----AVIVVPTRELGMQVTKVAR 159
Q ++ A+++ PTREL Q+ V R
Sbjct: 305 NQPPIIRGEGPIALVLAPTRELAQQIQSVVR 335
>gi|355571182|ref|ZP_09042434.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
gi|354825570|gb|EHF09792.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
Length = 441
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
VPE +LR + + G+ PT IQ A+PV+ D + A TG+GKT + + + ++ R
Sbjct: 11 VPEPLLRAIRDLGFEEPTPIQSLAIPVIREGHDMVGQAHTGTGKTAAFGIPLLEMLEPDR 70
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLA 162
AVQA+++ PTREL +QV++ R LA
Sbjct: 71 PAVQALVLCPTRELAIQVSEELRKLA 96
>gi|319947567|ref|ZP_08021797.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
700641]
gi|417919583|ref|ZP_12563112.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746255|gb|EFV98518.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
700641]
gi|342832350|gb|EGU66646.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 447
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+++ + E ++ T++Q + +P++ + RD + ++TGSGKT T+LL IF +N S
Sbjct: 10 DYIQEALKEINFIEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQTLNEDSSH 69
Query: 139 VQAVIVVPTRELGMQVTKVARVLAA 163
V+ VI P+REL Q+ + AR +A+
Sbjct: 70 VEVVITAPSRELATQIYQAARQIAS 94
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+PE +L + + G+ P+ IQ E +P+L RD + AQTG+GKT + L + S ++ +
Sbjct: 62 LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTKA 121
Query: 137 SAVQAVIVVPTRELGMQV 154
QA+++ PTREL +QV
Sbjct: 122 RHPQALVLAPTRELALQV 139
>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
Length = 799
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP VL+ + E NN +T++ + +G P++V+ + + G+
Sbjct: 107 YKPCDTVLARTQGETESFLT---NNEITIKGDQVPTPSIDFEEGGFPDYVMNEIRKQGFA 163
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 164 KPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 223
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 224 TRELAQQIQQVA 235
>gi|150025027|ref|YP_001295853.1| DEAD/DEAH box helicase [Flavobacterium psychrophilum JIP02/86]
gi|149771568|emb|CAL43039.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium psychrophilum JIP02/86]
Length = 444
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILH-AQTGSGKTLTYLLLI 128
++ + E +L+ + + +PT+IQ++++PVL SS+D + A+TG+GKT + L +
Sbjct: 3 KQFANLGIAEPILKALLDLKITVPTEIQQKSVPVLLSSQDDFIGLAKTGTGKTAAFGLPL 62
Query: 129 FSLVNAQRSAVQAVIVVPTRELGMQV 154
L+N + +QAVI+VPTRELG Q+
Sbjct: 63 LQLINVNNAKIQAVILVPTRELGNQI 88
>gi|430377251|ref|ZP_19431384.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
macacae 0408225]
gi|429540388|gb|ELA08417.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
macacae 0408225]
Length = 613
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 9/96 (9%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNA----- 134
+L+ +++TGY PT IQ +A+PV RD +L AQTGSGKT ++L ++ L N
Sbjct: 62 LLKSIEKTGYTTPTPIQAKAIPVAIEGRDLLLSAQTGSGKTAAFVLPILHQLSNTPAIKT 121
Query: 135 ---QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167
+ AV+A+I+ PTREL QV+ R + D
Sbjct: 122 KQHKSKAVKALILTPTRELAHQVSDSIRRYGSSMRD 157
>gi|428222903|ref|YP_007107073.1| DNA/RNA helicase [Synechococcus sp. PCC 7502]
gi|427996243|gb|AFY74938.1| DNA/RNA helicase, superfamily II [Synechococcus sp. PCC 7502]
Length = 511
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ PT IQ +++P L +D + AQTG+GKT + L I ++ ++ +QA+I+ P
Sbjct: 20 ELGFTAPTPIQSQSIPALLEGKDMLGQAQTGTGKTAAFSLPILERIDPYQNQLQALILTP 79
Query: 147 TRELGMQVTKVARVLAAKP 165
TREL +QV++ R KP
Sbjct: 80 TRELAIQVSQAIRSFNLKP 98
>gi|427706220|ref|YP_007048597.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427358725|gb|AFY41447.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 512
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 48/70 (68%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+++ G+ PT+IQ +A+P L S RD + +QTG+GKT + L I ++ + AVQA+++
Sbjct: 18 LEKMGFTAPTNIQIQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDVNQRAVQAIVL 77
Query: 145 VPTRELGMQV 154
PTREL +QV
Sbjct: 78 TPTRELAIQV 87
>gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
Length = 436
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
+Q +A+P + S RD I+ AQTG+GKTL +LL + + QA++V PTREL MQ
Sbjct: 17 VQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGNARVAQALVVSPTRELAMQTA 76
Query: 156 KVARVLA 162
+VA+ LA
Sbjct: 77 RVAKTLA 83
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T ++L ++PE +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT + L
Sbjct: 7 MTFKDL---NLPEPILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFAL 63
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ + ++ ++ Q +++ PTREL +QV + +V A+
Sbjct: 64 PMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 392
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 61/93 (65%), Gaps = 6/93 (6%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T ++L ++ E +L+ ++E GYV PT IQ +A+P L +D + AQTG+GKT + +
Sbjct: 21 MTFKDL---NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAI 77
Query: 127 LIFSLVNAQRS---AVQAVIVVPTRELGMQVTK 156
I + A R+ +++A+I+ PTREL +Q+++
Sbjct: 78 PIIQQLQADRNLNKSIKALILTPTRELALQISE 110
>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 661
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P + L + Y PT IQ +A+P + S RD I A+TGSGKT+ +LL +F + QR
Sbjct: 87 LPANCLDVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRHIKDQR 146
Query: 137 SAVQ-----AVIVVPTRELGMQVTK 156
S Q AV++ PTREL +Q+ K
Sbjct: 147 SLEQMEGPIAVVMTPTRELAVQIHK 171
>gi|302415451|ref|XP_003005557.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
gi|261354973|gb|EEY17401.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
Length = 390
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 63 EAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVP 122
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 123 TRELAMQTSQVCKTLG 138
>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 493
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134
G PE +++ + + Y PT IQ EA+P++ +D I AQTG+GKT ++L I + ++
Sbjct: 9 GFRPE-LMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNALDE 67
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+ +QA+I+ PTREL +Q+ K L +H V++L G + + S LK
Sbjct: 68 GKRDIQALILTPTRELSIQIAKEVEKLG--------KHLNVNVLSLHGGTDIDKQLSKLK 119
>gi|347525841|ref|YP_004832589.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345284800|gb|AEN78653.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 446
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ E G+ PT++Q +P++ R + +QTGSGKT T+LL IF ++ + + VQAVI
Sbjct: 18 LKEIGFKEPTEVQARLIPMILKRRSVVGQSQTGSGKTHTFLLPIFQTIDPELTEVQAVIT 77
Query: 145 VPTRELGMQVTKVARVLA 162
P+REL Q+ A+ +A
Sbjct: 78 TPSRELAYQIYDAAKQIA 95
>gi|393218769|gb|EJD04257.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 573
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
V +++ + E GY PTDIQ A P++ RD + TG+GKTL+YL+ IFSL+ A
Sbjct: 126 VSPRIIQNLKEYGYSSPTDIQSYATPIMLQGRDLAAISPTGTGKTLSYLVPIFSLLKAPN 185
Query: 137 SA--------VQAVIVVPTRELGMQV 154
S+ V+AVI+ PTREL Q+
Sbjct: 186 SSSKVTVGSGVRAVILAPTRELAHQI 211
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-----LIFSLVNAQ 135
+LR + G+V PTDIQ EA+P + RD I+ +QTGSGKTL YLL L+ S ++
Sbjct: 12 LLRSVQHLGFVKPTDIQAEAIPAVMVGRDLIVSSQTGSGKTLAYLLPMMQRLLKSRPLSK 71
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
R A +A+I+ PTREL QV R+ A
Sbjct: 72 RDA-RALILAPTRELAKQVYAQLRLFVA 98
>gi|346976089|gb|EGY19541.1| ATP-dependent RNA helicase DHH1 [Verticillium dahliae VdLs.17]
Length = 492
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 23 EAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVP 82
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 83 TRELAMQTSQVCKTLG 98
>gi|328709089|ref|XP_003243867.1| PREDICTED: probable ATP-dependent RNA helicase pitchoune-like
[Acyrthosiphon pisum]
Length = 511
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL----LIF 129
+GHV E+ L+ + + G+ + T+IQ + +P L RD + A+TGSGKTL +L+ LI+
Sbjct: 27 EGHVCENTLKGIADMGFTVMTEIQAKTIPPLLEGRDLVGAAKTGSGKTLAFLIPAVELIY 86
Query: 130 SLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
L R+ +I+ PTREL MQ V + L
Sbjct: 87 KLKFMPRNGTGCIIISPTRELSMQTYGVLKEL 118
>gi|119775581|ref|YP_928321.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119768081|gb|ABM00652.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
SB2B]
Length = 447
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ--RSA 138
+L+ + + GY PT+IQ +++PVL S RD I AQTGSGKT + L I ++ + R
Sbjct: 12 LLQTLIQCGYRTPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPILKQLSDKGLRGG 71
Query: 139 VQAVIVVPTRELGMQV 154
+QA+++VPTREL +QV
Sbjct: 72 IQALVLVPTRELAVQV 87
>gi|345304632|ref|YP_004826534.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
marinus SG0.5JP17-172]
gi|345113865|gb|AEN74697.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 505
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%)
Query: 48 LSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS 107
L+ A ++ AA L E+ +PE + + G+ +QR LP L
Sbjct: 16 LTRRAQQKKQEAAAVQATGAPLPEVSLAELPERMQQAARAIGWTELMPVQRRTLPYLLEG 75
Query: 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
RD I+ +QTGSGKT +LL +F ++ R VQA+I+ PTREL Q+
Sbjct: 76 RDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQALILTPTRELARQI 122
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+T ++L ++PE +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT +
Sbjct: 6 DMTFKDL---NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFA 62
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + + ++ ++ Q +++ PTREL +QV + +V A+
Sbjct: 63 LPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|367470617|ref|ZP_09470306.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
gi|365814311|gb|EHN09520.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
Length = 503
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL + + GY P+ IQ +A+P + RD I AQTGSGKT + I + V+
Sbjct: 11 EPVLEALRDIGYERPSPIQEQAIPPMLEGRDVIGQAQTGSGKTAAFGAPIVNYVDPSDPD 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
QA+++ PTREL +QVT+ R + K V+A G +R S L+
Sbjct: 71 TQALVLTPTRELCIQVTQAIRGFGLR--------KGVEVVATFGGAPIRDQISRLR 118
>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
gi|442630633|ref|NP_001261491.1| CG10077, isoform D [Drosophila melanogaster]
gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
gi|440215390|gb|AGB94186.1| CG10077, isoform D [Drosophila melanogaster]
Length = 818
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 41 WKPLRAVLSSSAVSIEELAAGTGNNSLTLR---------ELCQGHVPEHVLRRMDETGYV 91
+KP +VL+ + E +N +T++ E +G P++V+ + + G+
Sbjct: 122 YKPCDSVLARTVGETETFLT---SNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFA 178
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ-----AVIVVP 146
PT IQ + P+ S RD + AQTGSGKTL Y+L +N Q + A+++ P
Sbjct: 179 KPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAP 238
Query: 147 TRELGMQVTKVA 158
TREL Q+ +VA
Sbjct: 239 TRELAQQIQQVA 250
>gi|225685109|gb|EEH23393.1| ATP-dependent RNA helicase dhh1 [Paracoccidioides brasiliensis
Pb03]
Length = 515
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 38 SISWKP-LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDI 96
S WK L+A + E++ A G E ++ ++ + E G+ P+ I
Sbjct: 20 SEKWKEHLKAPPKDTRTQTEDVTATKG------LEFEDFYIKRELMMGIFEAGFEKPSPI 73
Query: 97 QREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
Q E +PV + RD + A+ G+GKT +++ N + S QA+I+VPTREL +Q ++
Sbjct: 74 QEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKNSKTQALILVPTRELALQTSQ 133
Query: 157 VARVLA 162
V + L
Sbjct: 134 VCKTLG 139
>gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
Length = 371
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ E ++ + ++G PT +Q E + ++ RD I +QTG+GKTL +L+ +N
Sbjct: 7 NIKEDIIDILKKSGITKPTPVQEECIGIIKDGRDVIAQSQTGTGKTLAFLIPTLEKINKN 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
+ V A+I+ PTREL +Q++ A LA
Sbjct: 67 KKDVSALILTPTRELALQISNEAEKLA 93
>gi|68474158|ref|XP_718788.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
gi|68474329|ref|XP_718704.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
gi|74656470|sp|Q5AAW3.1|DHH1_CANAL RecName: Full=ATP-dependent RNA helicase DHH1
gi|46440487|gb|EAK99792.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
gi|46440576|gb|EAK99880.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
Length = 549
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ + RD + A+ G+GKT ++++ LV + + VQA+I+VP
Sbjct: 47 EAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVP 106
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 107 TRELALQTSQVVRTLG 122
>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
Length = 458
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
H LR E G T IQ +A+P + S +D I A+TG+GKTL ++L I ++ + S V
Sbjct: 18 HTLR---ENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 74
Query: 140 QAVIVVPTRELGMQVT 155
QA+IV PTREL +Q+T
Sbjct: 75 QALIVAPTRELALQIT 90
>gi|302810291|ref|XP_002986837.1| hypothetical protein SELMODRAFT_124676 [Selaginella moellendorffii]
gi|300145491|gb|EFJ12167.1| hypothetical protein SELMODRAFT_124676 [Selaginella moellendorffii]
Length = 415
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSA 138
++++ + E GY PT +QR+ +PVL R+C + A TGSGK+L ++L ++ L +
Sbjct: 33 NLIKNLVEAGYKEPTPVQRQVIPVLLQERECFVCAPTGSGKSLAFILPILMKLKKSSPDG 92
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
++AVI+ PTREL Q+ R LA
Sbjct: 93 IRAVILCPTRELAAQLITECRRLA 116
>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682530|ref|YP_003213815.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686129|ref|YP_003217262.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|423082047|ref|ZP_17070642.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Clostridium difficile 002-P50-2011]
gi|423085651|ref|ZP_17074093.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Clostridium difficile 050-P50-2011]
gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549297|gb|EHJ31144.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Clostridium difficile 002-P50-2011]
gi|357549568|gb|EHJ31414.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Clostridium difficile 050-P50-2011]
Length = 375
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E+ + + ++G PT IQ+E++ ++ +D I AQTG+GKTL +LL IF ++
Sbjct: 14 ISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDI 73
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
+ +Q +I+ PTREL +Q+T+ A L E K +++A G
Sbjct: 74 NDIQVLILSPTRELAIQITEEAMKLK--------ESKDVSILAAYGG 112
>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase [Trichodesmium erythraeum IMS101]
gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
Length = 495
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E ++ G+ PT IQ +A+P L +D + AQTG+GKT + L I ++
Sbjct: 10 ISEERANHLETIGFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLPILEQIDIDT 69
Query: 137 SAVQAVIVVPTRELGMQVTKVAR 159
+AVQA+I+ PTREL +QVT+ R
Sbjct: 70 NAVQALILTPTRELALQVTEAIR 92
>gi|343520590|ref|ZP_08757559.1| DEAD/DEAH box helicase [Parvimonas sp. oral taxon 393 str. F0440]
gi|343397548|gb|EGV10082.1| DEAD/DEAH box helicase [Parvimonas sp. oral taxon 393 str. F0440]
Length = 474
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ + VL+ + E G+ P+ IQ++A+P + + D I AQTG+GKT ++ + I VN
Sbjct: 9 NLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNDEDIIGQAQTGTGKTASFGIPIVEKVNKN 68
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
QA+++ PTREL +QV + LA ++K TV+ + G + R LK+
Sbjct: 69 NKTTQAMVLCPTRELSIQVAEEISKLA--------KYKGVTVVPIYGGQPIERQIRSLKM 120
>gi|224370609|ref|YP_002604773.1| DEAD/DEAH box helicase [Desulfobacterium autotrophicum HRM2]
gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
Length = 616
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL+ +D+ GY PT IQ E +P + + RD + AQTG+GKT + L + S ++ + Q
Sbjct: 30 VLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSRIDIKLKKPQ 89
Query: 141 AVIVVPTRELGMQVTKVARVLAAK 164
+++ PTREL +QV + + AA+
Sbjct: 90 VLVLAPTRELAIQVAESFKGYAAR 113
>gi|452821560|gb|EME28589.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 587
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKT 121
TG + C+ +PE ++R ++ETGY PT IQ +A+P + + I AQTGSGKT
Sbjct: 179 TGECPGPINSFCESRLPETLIRVIEETGYDKPTPIQAQAIPAILYGCNVIGIAQTGSGKT 238
Query: 122 LTYLLLIFSLVNAQ-----RSAVQAVIVVPTRELGMQVTKVARVLAA 163
Y L + V AQ R A++ PTREL Q+ R L A
Sbjct: 239 AAYSLPMIRHVWAQPRPKRRQGPIALVTAPTRELAQQIASEIRKLGA 285
>gi|406837051|ref|ZP_11096645.1| ATP-dependent RNA helicase [Lactobacillus vini DSM 20605]
Length = 437
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L+ + + + PT IQ+E +P++ + + + ++TGSGKT +LL I + +NA++ VQ
Sbjct: 14 ILQALKKINFQQPTPIQQEIIPLIMAKKSVVGQSETGSGKTHAFLLPIINQLNAKQQTVQ 73
Query: 141 AVIVVPTRELGMQVTKVAR-VLAAKPS 166
AVI P+REL Q+ + AR +LA +P
Sbjct: 74 AVITTPSRELAYQIYEAARQILAFEPE 100
>gi|322700752|gb|EFY92505.1| ATP-dependent RNA helicase DHH1 [Metarhizium acridum CQMa 102]
Length = 502
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 66 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKVSKIQCLILVP 125
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 126 TRELAMQTSQVCKTLG 141
>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 847
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV--NAQRSA 138
V R + GY +PT IQR++LP++ S +DC+ A+TGSGKT +L+ + + ++ +
Sbjct: 47 VFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMVEKLKEHSTKIG 106
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
V+AV++ PTREL +Q + A+ L+
Sbjct: 107 VRAVVLSPTRELAVQTLRFAKQLS 130
>gi|226294425|gb|EEH49845.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
Pb18]
Length = 577
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 38 SISWKP-LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDI 96
S WK L+A + E++ A G E ++ ++ + E G+ P+ I
Sbjct: 82 SEKWKEHLKAPPKDTRTQTEDVTATKG------LEFEDFYIKRELMMGIFEAGFEKPSPI 135
Query: 97 QREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
Q E +PV + RD + A+ G+GKT +++ N + S QA+I+VPTREL +Q ++
Sbjct: 136 QEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKNSKTQALILVPTRELALQTSQ 195
Query: 157 VARVLA 162
V + L
Sbjct: 196 VCKTLG 201
>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
gi|217985744|gb|EEC52085.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 392
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 61/93 (65%), Gaps = 6/93 (6%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T ++L ++ E +L+ ++E GYV PT IQ +A+P L +D + AQTG+GKT + +
Sbjct: 21 MTFKDL---NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAI 77
Query: 127 LIFSLVNAQRS---AVQAVIVVPTRELGMQVTK 156
I + A +S +++A+I+ PTREL +Q+++
Sbjct: 78 PIIQQLQADKSLNNSIKALILTPTRELALQISE 110
>gi|452747413|ref|ZP_21947208.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
gi|452008529|gb|EME00767.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
Length = 553
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL + GY P+ IQ +A+PV+ D I AQTG+GKT + L I S ++ R VQ
Sbjct: 17 VLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKIDPARKEVQ 76
Query: 141 AVIVVPTRELGMQV 154
A+I+ PTREL +QV
Sbjct: 77 ALILAPTRELALQV 90
>gi|68444623|ref|XP_684923.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1
[Danio rerio]
Length = 484
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 50/71 (70%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ S RD + A+ G+GK+ YL+ + ++ ++ ++QAV++VP
Sbjct: 114 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAVVIVP 173
Query: 147 TRELGMQVTKV 157
TREL +QV+++
Sbjct: 174 TRELALQVSQI 184
>gi|414887918|tpg|DAA63932.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 541
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 54 SIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILH 113
S EEL + G +S +++ + + G+ PT IQR+A+P+L S R+C
Sbjct: 144 SFEELISRYGCDS-------------YLVGNLSKLGFQEPTPIQRQAMPILLSGRECFAC 190
Query: 114 AQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKTL +L L+ + + V+AVI+ PTREL Q + + L
Sbjct: 191 APTGSGKTLAFLFPLLMKIKPGSKGGVKAVILCPTRELAAQTVRECKKL 239
>gi|329116579|ref|ZP_08245296.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
NCFD 2020]
gi|326906984|gb|EGE53898.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
NCFD 2020]
gi|456369437|gb|EMF48337.1| ATP-dependent RNA helicase [Streptococcus parauberis KRS-02109]
gi|457094901|gb|EMG25396.1| ATP-dependent RNA helicase [Streptococcus parauberis KRS-02083]
Length = 447
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ +++ +D + PTD+Q++ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 NFKQYIQDALDAIKFTEPTDVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDED 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ VQ +I P+REL Q+ A+ +A+
Sbjct: 67 LAQVQVLITAPSRELATQIFDAAKQIAS 94
>gi|238878859|gb|EEQ42497.1| hypothetical protein CAWG_00709 [Candida albicans WO-1]
Length = 550
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ + RD + A+ G+GKT ++++ LV + + VQA+I+VP
Sbjct: 47 EAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVP 106
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 107 TRELALQTSQVVRTLG 122
>gi|374581781|ref|ZP_09654875.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374417863|gb|EHQ90298.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 535
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ + +L+ + E G+ P+ IQ++A+PV D I AQTG+GKT + + I VN++
Sbjct: 13 QLSKQLLQALSEMGFEEPSPIQKQAIPVALDGVDLIGQAQTGTGKTAAFGIPITEKVNSK 72
Query: 136 RSAVQAVIVVPTRELGMQVTK 156
AVQA+IV PTREL +QV++
Sbjct: 73 FQAVQALIVTPTRELAIQVSE 93
>gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 432
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T EL ++ + +L +++ G+ PT IQ A PV+ S +D I AQTG+GKTL YL+
Sbjct: 1 MTFNEL---NISKQILMALEDAGFEQPTPIQERAFPVIRSGKDVIGIAQTGTGKTLAYLI 57
Query: 127 -LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
L+ L AQ + +A+++VPTREL +QV + +L
Sbjct: 58 PLLMKLHYAQGNYPRALVIVPTRELVVQVCESVELL 93
>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 484
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
+L + + GY+ T IQ E+LP+ + D I A+TGSGKT + L + + +N +R A+Q
Sbjct: 40 LLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTRLNPRRFAIQ 99
Query: 141 AVIVVPTRELGMQVTKVARVLA 162
A+++ PTREL QVT+ R LA
Sbjct: 100 AMVLCPTRELADQVTQEIRRLA 121
>gi|242046786|ref|XP_002461139.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
gi|241924516|gb|EER97660.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
Length = 546
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 54 SIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILH 113
S EEL + G +S +++ + + G+ PT IQR+A+P+L S R+C
Sbjct: 149 SFEELISRYGCDS-------------YLVGNLSKLGFQEPTPIQRQAMPILLSGRECFAC 195
Query: 114 AQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKTL +L L+ + + V+AVI+ PTREL Q + + L
Sbjct: 196 APTGSGKTLAFLFPLLMKIKPGSKGGVKAVILCPTRELAAQTVRECKKL 244
>gi|333904525|ref|YP_004478396.1| helicase [Streptococcus parauberis KCTC 11537]
gi|333119790|gb|AEF24724.1| helicase [Streptococcus parauberis KCTC 11537]
Length = 461
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ +++ +D + PTD+Q++ +P++ S RD + ++TGSGKT T+LL IF ++
Sbjct: 7 NFKQYIQDALDAIKFTEPTDVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDED 66
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAA 163
+ VQ +I P+REL Q+ A+ +A+
Sbjct: 67 LAQVQVLITAPSRELATQIFDAAKQIAS 94
>gi|322780454|gb|EFZ09942.1| hypothetical protein SINV_14078 [Solenopsis invicta]
Length = 377
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNA 134
V E++L M +GY+ PT IQ +A+P++ R + A TGSGKT +LL +I SL
Sbjct: 139 QVSENLLDNMKNSGYMYPTPIQMQAMPIMLEGRQILACAPTGSGKTAAFLLPIIHSLRGP 198
Query: 135 QRSAVQAVIVVPTRELGMQ 153
Q+ +AVI+ PTREL Q
Sbjct: 199 QKKGFRAVILSPTRELAKQ 217
>gi|449680655|ref|XP_002168566.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Hydra
magnipapillata]
Length = 585
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
L L+E + +VP +++ + E G+ +PT IQ +A+PV+ R+ + A TGSGKTL ++L
Sbjct: 158 LDLKE--RFNVPTIIMKNVKENGFEVPTPIQMQAIPVILQHREMLACAPTGSGKTLAFIL 215
Query: 127 LIFS-LVNAQRSAVQAVIVVPTRELGMQVTK 156
I L ++++ ++AVIV PTREL Q+ +
Sbjct: 216 PILCHLKESKKTGIRAVIVSPTRELSQQIYR 246
>gi|431926946|ref|YP_007239980.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431825233|gb|AGA86350.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 556
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL + GY P+ IQ +A+PV+ D I AQTG+GKT + L I S ++ R VQ
Sbjct: 17 VLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKIDPARKEVQ 76
Query: 141 AVIVVPTRELGMQV 154
A+I+ PTREL +QV
Sbjct: 77 ALILAPTRELALQV 90
>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 483
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
Q ++ E VL+ + E G+ PT IQ++ LP++F RD I ++TGSGKT +++ I +
Sbjct: 101 QLNICEEVLQSIKELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSGKTACFIIPILQELK 160
Query: 134 AQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLD 182
++ + A+I+ PTREL +Q+ + A+ L + +L CT+ +D
Sbjct: 161 YKKQSFFALIISPTRELCIQIAQNAQALGS-----NLLINICTIFGGVD 204
>gi|423298414|ref|ZP_17276472.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
gi|392663326|gb|EIY56877.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
Length = 374
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 61/95 (64%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ E +L+ ++E GY +PT IQ EA+P + RD + AQTG+GKT ++ +
Sbjct: 1 MTFKEL---NITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVNAQRSA-----VQAVIVVPTRELGMQVTK 156
I + + A ++A+I++PTREL +Q+++
Sbjct: 58 PIIQHLQMNKEAAKCRGIKALILMPTRELALQISE 92
>gi|322708424|gb|EFZ00002.1| ATP dependent RNA helicase (Dhh1), putative [Metarhizium anisopliae
ARSEF 23]
Length = 489
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 53 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKVSKIQCLILVP 112
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 113 TRELAMQTSQVCKTLG 128
>gi|302807590|ref|XP_002985489.1| hypothetical protein SELMODRAFT_23881 [Selaginella moellendorffii]
gi|300146695|gb|EFJ13363.1| hypothetical protein SELMODRAFT_23881 [Selaginella moellendorffii]
Length = 378
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA------ 134
+++++DE PT +Q A+PVL D + + TGSGKTL YLL I S +
Sbjct: 10 LVQKLDEMNLKSPTQVQASAIPVLLDGHDAAMQSYTGSGKTLAYLLPILSTIGPFADAGG 69
Query: 135 -----QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRH 189
+ A+ AVIV P+REL MQ+ + A L EH+ V L+ G L+R
Sbjct: 70 DESARKTGAIDAVIVAPSRELAMQIVREAEKLLGD------EHRR-LVQQLIGGANLKRQ 122
Query: 190 KSWLK 194
LK
Sbjct: 123 AEALK 127
>gi|241949195|ref|XP_002417320.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223640658|emb|CAX44953.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 543
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ + RD + A+ G+GKT ++++ LV + + VQA+I+VP
Sbjct: 47 EAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVP 106
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 107 TRELALQTSQVVRTLG 122
>gi|126698411|ref|YP_001087308.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360108|ref|YP_006197960.1| ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
Length = 369
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E+ + + ++G PT IQ+E++ ++ +D I AQTG+GKTL +LL IF ++
Sbjct: 8 ISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDI 67
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
+ +Q +I+ PTREL +Q+T+ A L E K +++A G
Sbjct: 68 NDIQVLILSPTRELAIQITEEAMKLK--------ESKDVSILAAYGG 106
>gi|392421713|ref|YP_006458317.1| DEAD/DEAH box helicase [Pseudomonas stutzeri CCUG 29243]
gi|390983901|gb|AFM33894.1| DEAD/DEAH box helicase [Pseudomonas stutzeri CCUG 29243]
Length = 556
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL + GY P+ IQ +A+PV+ D I AQTG+GKT + L I S ++ R VQ
Sbjct: 17 VLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKIDPARKEVQ 76
Query: 141 AVIVVPTRELGMQV 154
A+I+ PTREL +QV
Sbjct: 77 ALILAPTRELALQV 90
>gi|335048107|ref|ZP_08541127.1| DEAD-box ATP-dependent RNA helicase CshA [Parvimonas sp. oral taxon
110 str. F0139]
gi|333757907|gb|EGL35465.1| DEAD-box ATP-dependent RNA helicase CshA [Parvimonas sp. oral taxon
110 str. F0139]
Length = 580
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ + VL+ + E G+ P+ IQ++A+P + ++ D I AQTG+GKT ++ + I VN
Sbjct: 9 NLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVEKVNKN 68
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
QA+++ PTREL +QV + LA ++K TV+ + G + R LK+
Sbjct: 69 SKTTQAMVLCPTRELSIQVAEEISKLA--------KYKGVTVVPIYGGQPIERQIRSLKM 120
>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
gi|158447119|gb|EDP24114.1| DEAD/DEAH box helicase [Parvimonas micra ATCC 33270]
Length = 580
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
++ + VL+ + E G+ P+ IQ++A+P + ++ D I AQTG+GKT ++ + I VN
Sbjct: 9 NLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVEKVNKN 68
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV 195
QA+++ PTREL +QV + LA ++K TV+ + G + R LK+
Sbjct: 69 SKTTQAMVLCPTRELSIQVAEEISKLA--------KYKGVTVVPIYGGQPIERQIRSLKM 120
>gi|402300168|ref|ZP_10819703.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401724678|gb|EJS98018.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 454
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 80 HVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ +DE ++PT+IQ +P +++ D I +QTG+GKTL +LL + + ++ + V
Sbjct: 14 YLIESLDEQNILMPTEIQERLIPAIYNGHDVIGQSQTGTGKTLAFLLPLLNRLDESKDEV 73
Query: 140 QAVIVVPTRELGMQV 154
QAVI PTREL Q+
Sbjct: 74 QAVITAPTRELASQL 88
>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
Length = 821
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 9/95 (9%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+R + P+ +L +D+ GY PT IQR+A+P+ +RD I A+TGSGKTL +L+ +
Sbjct: 392 IRNWIESGFPKEILEIIDKVGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPL 451
Query: 129 FSLVNA------QRSAVQ---AVIVVPTRELGMQV 154
+ + + Q +A Q A+I+ PTREL Q+
Sbjct: 452 LTWIQSLPKIERQETADQGPYAIILAPTRELAQQI 486
>gi|255729496|ref|XP_002549673.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
gi|240132742|gb|EER32299.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
Length = 554
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ + RD + A+ G+GKT ++++ LV + + VQA+I+VP
Sbjct: 47 EAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVP 106
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 107 TRELALQTSQVVRTLG 122
>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|417974488|ref|ZP_12615306.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|346329149|gb|EGX97450.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 446
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ E G+ PT++Q +P++ R + +QTGSGKT T+LL IF ++ + + VQAVI
Sbjct: 18 LKEIGFKEPTEVQARLIPLILKRRSVVGQSQTGSGKTHTFLLPIFQTIDPELTEVQAVIT 77
Query: 145 VPTRELGMQVTKVARVLA 162
P+REL Q+ A+ +A
Sbjct: 78 TPSRELAYQIYDAAKQIA 95
>gi|335996991|ref|ZP_08562908.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335352061|gb|EGM53552.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 446
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ E G+ PT++Q +P++ R + +QTGSGKT T+LL IF ++ + + VQAVI
Sbjct: 18 LKEIGFKEPTEVQARLIPLILKRRSVVGQSQTGSGKTHTFLLPIFQTIDPELTEVQAVIT 77
Query: 145 VPTRELGMQVTKVARVLA 162
P+REL Q+ A+ +A
Sbjct: 78 TPSRELAYQIYDAAKQIA 95
>gi|423067030|ref|ZP_17055820.1| DEAD/DEAH box helicase domain protein [Arthrospira platensis C1]
gi|406711316|gb|EKD06517.1| DEAD/DEAH box helicase domain protein [Arthrospira platensis C1]
Length = 484
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E R ++ G+ PT +Q +A+P + S RD + AQTG+GKT + L I ++
Sbjct: 29 ISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVHA 88
Query: 137 SAVQAVIVVPTRELGMQVTKVAR 159
+ +QA+++ PTREL MQV + R
Sbjct: 89 AGIQALVLTPTRELAMQVKEAIR 111
>gi|418292125|ref|ZP_12904075.1| DEAD/DEAH box helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379063558|gb|EHY76301.1| DEAD/DEAH box helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 556
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL + GY P+ IQ +A+PV+ D I AQTG+GKT + L I S ++ R VQ
Sbjct: 17 VLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKIDPARKEVQ 76
Query: 141 AVIVVPTRELGMQV 154
A+I+ PTREL +QV
Sbjct: 77 ALILAPTRELALQV 90
>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
Length = 375
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E+ + + ++G PT IQ+E++ ++ +D I AQTG+GKTL +LL IF ++
Sbjct: 14 ISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDI 73
Query: 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDG 183
+ +Q +I+ PTREL +Q+T+ A L E K +++A G
Sbjct: 74 NDIQVLILSPTRELAIQITEEAMKLK--------ESKDVSILAAYGG 112
>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
Length = 622
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
++T ++L ++P +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT +
Sbjct: 6 NMTFKDL---NLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFA 62
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + + ++ + S Q +++ PTREL +QV + +V A+
Sbjct: 63 LPMLANIDVEESFPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +LR ++E GY P+ IQ+ A P L RD + AQTG+GKT + L + + + S
Sbjct: 66 EALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLEGRSSK 125
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
+ +++ PTREL MQV + AA H V+A+ G R LK
Sbjct: 126 PRVLVLAPTRELAMQVADSFKAYAAG-------HPHLNVLAIYGGSDFRSQIHTLK 174
>gi|395815581|ref|XP_003781304.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
[Otolemur garnettii]
Length = 872
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 212 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 271
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + Q S+ + AVI+ PTREL +Q+TK
Sbjct: 272 FRHIMDQWSSEEGEGPIAVIMTPTRELTLQITK 304
>gi|395815579|ref|XP_003781303.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
[Otolemur garnettii]
Length = 1031
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + Q S+ + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQWSSEEGEGPIAVIMTPTRELTLQITK 463
>gi|449017345|dbj|BAM80747.1| RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 471
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 40 SWK-PLRAVLSSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTD 95
W+ L+A + E++ A GN + REL G + E G+ P+
Sbjct: 70 DWRRNLQAPPKDTRYRTEDVTATRGNSFEDYYLRRELLMG---------LFEMGWERPSP 120
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
+Q A+PV + RD + A+ G+GKT +L+ I ++ +++A+QA+++VPTREL +Q
Sbjct: 121 VQEAAVPVALAGRDVLARAKNGTGKTGAFLIPILERLDTKKNAIQALVLVPTRELALQTA 180
Query: 156 KVARVLAAK 164
VA+ L +
Sbjct: 181 AVAKALGKR 189
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
ortholog [Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN--AQRSA 138
VL+ +D+ G+ P+ IQ EA+PV+ D I AQTG+GKT+ + I S + ++
Sbjct: 15 VLKAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPIISKIKDIDEKEG 74
Query: 139 VQAVIVVPTRELGMQVT 155
VQA+I+ PTREL +Q+T
Sbjct: 75 VQAIILTPTRELAIQIT 91
>gi|366090386|ref|ZP_09456752.1| ATP-dependent RNA helicase [Lactobacillus acidipiscis KCTC 13900]
Length = 443
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
V + +++ + PT++Q+ LP + + + AQTGSGKT +LL IF+ ++ Q VQ
Sbjct: 14 VQQALEKLNFTEPTEVQKRLLPPIMHGKSVVGQAQTGSGKTHAFLLPIFNKLDVQEHEVQ 73
Query: 141 AVIVVPTRELGMQVTKVARVLAAK 164
AVI P+REL Q+ A+ +AA+
Sbjct: 74 AVITTPSRELAYQIYDAAKQIAAQ 97
>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
Length = 374
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 61/95 (64%), Gaps = 8/95 (8%)
Query: 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
+T +EL ++ E +L+ ++E GY +PT IQ +A+P + RD + AQTG+GKT ++ +
Sbjct: 1 MTFKEL---NITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAI 57
Query: 127 LIFSLVN-----AQRSAVQAVIVVPTRELGMQVTK 156
I + A+R ++A+I+ PTREL +Q+++
Sbjct: 58 PIIQHLQLDKEAARRQGIKALILTPTRELALQISE 92
>gi|297833736|ref|XP_002884750.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
lyrata]
gi|297330590|gb|EFH61009.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
lyrata]
Length = 539
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 14/110 (12%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C+G++ L + E G+ PT IQR+A+P+L S R+C
Sbjct: 126 SGNNIPPPLKSFAELSSRYGCEGYI----LGNLAELGFKEPTPIQRQAIPILLSGRECFA 181
Query: 113 HAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKT+ ++ ++ L + ++AVI+ P REL Q + + L
Sbjct: 182 CAPTGSGKTVAFICPMLIKLKHPSTDGIRAVILSPARELAAQTAREGKKL 231
>gi|383753494|ref|YP_005432397.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365546|dbj|BAL82374.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 437
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G T +Q +A+P+ + RD I+ AQTG+GKTL +LL I + Q QA+IV PTR
Sbjct: 21 GIREATPVQEKAIPLARAGRDIIVQAQTGTGKTLAFLLPILEKIKPQVDVAQALIVAPTR 80
Query: 149 ELGMQVTKVARVLA 162
EL +QV KVA ++
Sbjct: 81 ELAIQVAKVAAIVG 94
>gi|172056876|ref|YP_001813336.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171989397|gb|ACB60319.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 450
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152
PTDIQ +P RD I +QTG+GKTL++LL I VN + +QA+IV PTREL
Sbjct: 25 PTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAW 84
Query: 153 QVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
Q+ + + + K D +L+ GGM R
Sbjct: 85 QIHEELKSILVKQPD-------YIKTSLITGGMDR 112
>gi|429767432|ref|ZP_19299629.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Clostridium celatum DSM 1785]
gi|429180842|gb|EKY22043.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Clostridium celatum DSM 1785]
Length = 367
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+ ++G PT IQ++++ + S++D I AQTG+GKTL +LL IF ++ +QA+I+
Sbjct: 16 LKKSGIKTPTPIQQDSISHILSNKDVIAEAQTGTGKTLAFLLPIFENISLGSKGIQALII 75
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL +Q+T+ A L+
Sbjct: 76 SPTRELAIQITEEANKLS 93
>gi|83816639|ref|YP_444201.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
gi|83758033|gb|ABC46146.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
Length = 478
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 65 NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124
+ +T+ EL GH+ + V G+ D+QR+A+P RD I+ +QTGSGKT +
Sbjct: 41 DEVTVDELS-GHMEQAVHA----AGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAF 95
Query: 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154
LL +F LVN + Q +I+ PTREL Q+
Sbjct: 96 LLPLFDLVNPDKEEQQVLILTPTRELARQI 125
>gi|396483789|ref|XP_003841790.1| similar to ATP-dependent RNA helicase dhh1 [Leptosphaeria maculans
JN3]
gi|312218365|emb|CBX98311.1| similar to ATP-dependent RNA helicase dhh1 [Leptosphaeria maculans
JN3]
Length = 511
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 40 SWKP-LRAVLSSSAVSIEELAAGTG---NNSLTLRELCQGHVPEHVLRRMDETGYVLPTD 95
+WK L+A + E++ A G + REL G + E G+ P+
Sbjct: 25 NWKEGLKAPAKDARPQTEDVTATKGLEFEDFFIKRELMMG---------IFEAGFEKPSP 75
Query: 96 IQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155
IQ E +PV + RD + A+ G+GKT +++ VN + S QA+I+VPTREL +Q +
Sbjct: 76 IQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTS 135
Query: 156 KVARVLA 162
+V ++L
Sbjct: 136 QVCKMLG 142
>gi|392550603|ref|ZP_10297740.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas spongiae
UST010723-006]
Length = 600
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 64 NNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLT 123
N+ + EL ++P +L + E G+V PT IQ++++P L + +D + AQTG+GKT
Sbjct: 3 NDKILFEEL---NLPTPILSAITELGFVEPTPIQQQSIPALLAGKDVLGEAQTGTGKTAA 59
Query: 124 YLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
+ L + + ++A +A Q ++V PTREL +QV +
Sbjct: 60 FGLPLLARLDANLNAPQMLVVCPTRELAIQVAE 92
>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 669
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+P + R +DE G+ P+ IQ +A+P L RD I AQTG+GKT + L + + ++
Sbjct: 91 LPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAAIDPSL 150
Query: 137 SAVQAVIVVPTRELGMQV 154
VQA+++ PTREL MQV
Sbjct: 151 REVQALVLAPTRELAMQV 168
>gi|209527740|ref|ZP_03276235.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
gi|376003176|ref|ZP_09780991.1| ATP-dependent RNA helicase DeaD-like [Arthrospira sp. PCC 8005]
gi|209491818|gb|EDZ92178.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
gi|375328501|emb|CCE16744.1| ATP-dependent RNA helicase DeaD-like [Arthrospira sp. PCC 8005]
Length = 465
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E R ++ G+ PT +Q +A+P + S RD + AQTG+GKT + L I ++
Sbjct: 10 ISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVHA 69
Query: 137 SAVQAVIVVPTRELGMQVTKVAR 159
+ +QA+++ PTREL MQV + R
Sbjct: 70 AGIQALVLTPTRELAMQVKEAIR 92
>gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 428
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 91 VLPTDIQREALPVLFSSR-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149
V PTDIQ++A+P L +S+ D + AQTG+GKTL + + + L++ VQAVI+VPTRE
Sbjct: 24 VQPTDIQQQAIPALLTSKKDVVALAQTGTGKTLAFGVPLLQLIDRTNPTVQAVILVPTRE 83
Query: 150 LGMQV 154
LG Q+
Sbjct: 84 LGQQI 88
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +LR + + GY PT IQ +A+PV+ S+ D I AQTG+GKT + L I + +R
Sbjct: 11 EPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQRLRDERVP 70
Query: 139 VQAVIVVPTRELGMQVTK 156
QA+I+ PTREL MQV +
Sbjct: 71 -QALILAPTRELAMQVAE 87
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
E + E + + ++E G+V PT IQ+EA+P+ D + AQTG+GKT + + + S
Sbjct: 2 EFSFSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVS 61
Query: 131 LVNAQRSAVQAVIVVPTRELGMQV 154
++ + V+A+++ PTREL +QV
Sbjct: 62 GISPRERGVKAIVLTPTRELAIQV 85
>gi|389747864|gb|EIM89042.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 538
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT +++ V+ R+ +QA+++VP
Sbjct: 63 EAGFERPSPIQEEAIPIALAKRDVLARAKNGTGKTAAFVIPSLQQVDVSRNKIQALLLVP 122
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V ++L
Sbjct: 123 TRELALQTSQVCKILG 138
>gi|384493411|gb|EIE83902.1| ATP-dependent RNA helicase DHH1 [Rhizopus delemar RA 99-880]
Length = 523
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 56 EELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCIL 112
E++ A GN + REL G + E G+ P+ IQ EA+P+ + RD +
Sbjct: 29 EDVTATKGNEFEDYFLKRELLMG---------IFEAGFEKPSPIQEEAIPLALAGRDILA 79
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT +++ +N S +QA+I+VPTREL +Q ++V + L
Sbjct: 80 RAKNGTGKTAAFIIPTLEKINNSLSKIQALILVPTRELALQTSQVCKTLG 129
>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
Length = 595
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ + P++VLR + G+ PT IQ + P+ S RD + A TGSGKTL+Y+L
Sbjct: 130 DFDEAGFPDYVLREIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 189
Query: 131 LVNAQ-----RSAVQAVIVVPTRELGMQVTKVA 158
+N+Q + A+++ PTREL Q+ +VA
Sbjct: 190 HINSQPKLSRKDGPIALVLAPTRELAQQIQQVA 222
>gi|57640241|ref|YP_182719.1| DEAD/DEAH box helicase [Thermococcus kodakarensis KOD1]
gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
Length = 406
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 85 MDETGYVLPTDIQREALPVLFSSR-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVI 143
++ G+ +PTDIQRE +P+L S+ D + ++TGSGKT + L I ++ VQA+I
Sbjct: 16 VERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPILDSIDESIREVQALI 75
Query: 144 VVPTRELGMQVTKVARVLAAK 164
+ PTREL +QVT R L K
Sbjct: 76 LTPTRELAIQVTDELRSLRGK 96
>gi|19113116|ref|NP_596324.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe 972h-]
gi|1174456|sp|Q09181.1|DHH1_SCHPO RecName: Full=Putative ATP-dependent RNA helicase ste13
gi|703066|dbj|BAA06178.1| RNA helicase [Schizosaccharomyces pombe]
gi|4176526|emb|CAA22882.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe]
Length = 485
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ S RD + A+ G+GKT +++ V+ ++S +Q +I+VP
Sbjct: 61 EAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVP 120
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL +Q ++V + L +H VM G LR
Sbjct: 121 TRELALQTSQVCKTLG--------KHMNVKVMVTTGGTTLR 153
>gi|392597064|gb|EIW86386.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 542
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV--- 132
+P +L+ + E G+ PT IQ +P+L SRD + TG+GKTL+Y+L +FSL+
Sbjct: 129 ELPSQLLKNLKENGFRHPTGIQSHGIPILLESRDLAAISPTGTGKTLSYILPVFSLLKLP 188
Query: 133 -----NAQRSAVQAVIVVPTRELGMQV 154
+ S V+AVI+ PTREL Q+
Sbjct: 189 SSTSKHDAGSGVRAVILAPTRELAHQI 215
>gi|380473069|emb|CCF46469.1| ATP-dependent RNA helicase HAS1 [Colletotrichum higginsianum]
Length = 605
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
+ Q ++ E ++ + E G+ T+IQR +P L S +D + A+TGSGKTL +L+
Sbjct: 127 DFSQLNLSEKTMKAIQEMGFTKMTEIQRRGIPPLLSGKDVLGAAKTGSGKTLAFLIPAIE 186
Query: 131 LVNA----QRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDT 168
+++A R+ ++V PTREL +Q+ VAR L A S T
Sbjct: 187 MLHALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT 228
>gi|389637846|ref|XP_003716556.1| ATP-dependent RNA helicase DHH1 [Magnaporthe oryzae 70-15]
gi|374095382|sp|A4R715.2|DHH1_MAGO7 RecName: Full=ATP-dependent RNA helicase DHH1
gi|351642375|gb|EHA50237.1| ATP-dependent RNA helicase DHH1 [Magnaporthe oryzae 70-15]
gi|440465764|gb|ELQ35065.1| ATP-dependent RNA helicase DHH1 [Magnaporthe oryzae Y34]
gi|440489906|gb|ELQ69516.1| ATP-dependent RNA helicase DHH1 [Magnaporthe oryzae P131]
Length = 535
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 64 EAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVP 123
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 124 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTTLR 156
>gi|332020434|gb|EGI60854.1| Putative ATP-dependent RNA helicase DDX52 [Acromyrmex echinatior]
Length = 558
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNA 134
V E++L M +GY+ PT IQ +A+P++ R + A TGSGKT +LL +I SL
Sbjct: 138 QVSENLLNNMKNSGYLYPTPIQMQAIPIMLEGRQILACAPTGSGKTAAFLLPIIHSLREP 197
Query: 135 QRSAVQAVIVVPTRELGMQ 153
Q+ +AVI+ PTREL Q
Sbjct: 198 QKKGFRAVILNPTRELAKQ 216
>gi|295657321|ref|XP_002789230.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283998|gb|EEH39564.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 515
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 38 SISWKP-LRAVLSSSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDI 96
S WK L+A + E++ A G E ++ ++ + E G+ P+ I
Sbjct: 20 SEKWKEHLKAPPKDTRTQTEDVTATKG------LEFEDFYIKRELMMGIFEAGFEKPSPI 73
Query: 97 QREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
Q E +PV + RD + A+ G+GKT +++ N + S QA+I+VPTREL +Q ++
Sbjct: 74 QEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKNSKTQALILVPTRELALQTSQ 133
Query: 157 VARVLA 162
V + L
Sbjct: 134 VCKTLG 139
>gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 444
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFS-SRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
+ E +L+ + E V PT+IQ++ +P+L + + D + A+TG+GKT + L + L++ +
Sbjct: 10 ISEPILKALSELNIVEPTEIQQKTIPLLLAENHDVVGLAKTGTGKTAAFGLPLLQLIDTK 69
Query: 136 RSAVQAVIVVPTRELGMQV 154
SAVQAVI+VPTRELG Q+
Sbjct: 70 SSAVQAVILVPTRELGHQI 88
>gi|427417898|ref|ZP_18908081.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425760611|gb|EKV01464.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 464
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+DE G+ PT IQ +A+P + + D + AQTG+GKT + L I VN + +VQA+++
Sbjct: 18 LDELGFKEPTPIQAQAIPHMLAGHDVVGLAQTGTGKTAAFSLPILEQVNINKRSVQALVL 77
Query: 145 VPTRELGMQVTKVARVL 161
PTREL MQV + + L
Sbjct: 78 TPTRELAMQVCQAVQGL 94
>gi|427391889|ref|ZP_18886113.1| hypothetical protein HMPREF9233_01616 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425731856|gb|EKU94669.1| hypothetical protein HMPREF9233_01616 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 682
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ +L + E GY P+ IQ++ +P L S RD + AQTG+GKT + L + S ++ ++
Sbjct: 30 DSILHTVAELGYETPSPIQQQTIPALLSGRDVVGVAQTGTGKTAAFGLPLVSRIDPEQKT 89
Query: 139 VQAVIVVPTRELGMQVTKVARVLAA 163
VQA+++ PTREL MQ AA
Sbjct: 90 VQALVLAPTRELAMQGADAIESFAA 114
>gi|363739175|ref|XP_414629.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Gallus
gallus]
Length = 1028
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + + RD I A+TGSGKT+ +LL +
Sbjct: 368 IKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPM 427
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR+ + AVI+ PTREL +Q+TK
Sbjct: 428 FRHIMDQRALEEGEGPIAVIMTPTRELALQITK 460
>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Meleagris gallopavo]
Length = 1027
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + + RD I A+TGSGKT+ +LL +
Sbjct: 367 IKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPM 426
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR+ + AVI+ PTREL +Q+TK
Sbjct: 427 FRHIMDQRALEEGEGPIAVIMTPTRELALQITK 459
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+T ++L ++PE +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT +
Sbjct: 6 DMTFKDL---NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFA 62
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + + ++ + Q +++ PTREL +QV + +V A+
Sbjct: 63 LPMLANIDPEERKPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|358054409|dbj|GAA99335.1| hypothetical protein E5Q_06030 [Mixia osmundae IAM 14324]
Length = 1043
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT ++++ VN + + +QA+I+VP
Sbjct: 480 EAGFEKPSPIQEEAIPIALAGRDILARAKNGTGKTGSFVIPALEKVNPKVNKIQALILVP 539
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V + L
Sbjct: 540 TRELALQTSQVCKTLG 555
>gi|345493222|ref|XP_003427025.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 2
[Nasonia vitripennis]
Length = 710
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 50 SSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRD 109
S S +E+ N ++ + + P++V+ + + G++ PT IQ + P+ S RD
Sbjct: 26 SKYYSGKEITVKGNNTPFPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRD 85
Query: 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA-----VIVVPTRELGMQVTKVAR 159
+ AQTGSGKTL Y+L +N Q + +++ PTREL Q+ VAR
Sbjct: 86 MVGIAQTGSGKTLAYILPATVHINNQPRLSRGDGPIVLVLAPTRELAQQIQSVAR 140
>gi|345493220|ref|XP_001605420.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 1
[Nasonia vitripennis]
Length = 777
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 50 SSAVSIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRD 109
S S +E+ N ++ + + P++V+ + + G++ PT IQ + P+ S RD
Sbjct: 93 SKYYSGKEITVKGNNTPFPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRD 152
Query: 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQA-----VIVVPTRELGMQVTKVAR 159
+ AQTGSGKTL Y+L +N Q + +++ PTREL Q+ VAR
Sbjct: 153 MVGIAQTGSGKTLAYILPATVHINNQPRLSRGDGPIVLVLAPTRELAQQIQSVAR 207
>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
Length = 518
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRS 137
+ VL+ + E G+ P+ IQ +A+P + RD I AQTG+GKT + L ++ SL N S
Sbjct: 29 DKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILHSLKND--S 86
Query: 138 AVQAVIVVPTRELGMQVT----KVARVLAAK 164
+++A+++ PTREL MQ++ K+ + L K
Sbjct: 87 SIEALVITPTRELAMQISDEVFKLGKFLKTK 117
>gi|167755660|ref|ZP_02427787.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
gi|167704599|gb|EDS19178.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
Length = 456
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E L+ ++E G+ PT IQ + +P+++ + D I +QTG+GKT +LL + ++ + ++
Sbjct: 11 EFCLQTIEELGFQKPTSIQEQVIPLVYKNSDIIGISQTGTGKTHAFLLPVMDRIDPKNNS 70
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSD 167
VQAVI PTREL Q+ A++ S+
Sbjct: 71 VQAVITAPTRELATQIYNNAKLFTKYNSE 99
>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
Length = 624
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140
VL+ ++E GY+ PT IQ +A+P L + +D + AQTG+GKT + L + S ++A Q
Sbjct: 18 VLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSRLDADLKQPQ 77
Query: 141 AVIVVPTRELGMQVTK 156
++V PTREL +QV +
Sbjct: 78 MLVVCPTRELAIQVAE 93
>gi|390569568|ref|ZP_10249853.1| ATP-dependent RNA helicase DbpA [Burkholderia terrae BS001]
gi|389938428|gb|EIN00272.1| ATP-dependent RNA helicase DbpA [Burkholderia terrae BS001]
Length = 463
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL + + GYV T IQ +LP+ + +D I A+TGSGKT + L + + ++A+ A
Sbjct: 15 EAVLANLTQLGYVEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSYA 74
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQA+++ PTREL QVT+ R LA
Sbjct: 75 VQAMVLCPTRELADQVTQEIRRLA 98
>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
Length = 474
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+D GY T +Q ++LP++ S RD I+ A+TGSGKT + L + + +N + VQA ++
Sbjct: 32 LDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLATINPRFFGVQAFVM 91
Query: 145 VPTRELGMQVTKVARVLAAK 164
PTREL QV K R LA++
Sbjct: 92 CPTRELADQVGKEIRRLASR 111
>gi|420253402|ref|ZP_14756456.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398052204|gb|EJL44488.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 463
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E VL + + GYV T IQ +LP+ + +D I A+TGSGKT + L + + ++A+ A
Sbjct: 15 EAVLANLTQLGYVEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSYA 74
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
VQA+++ PTREL QVT+ R LA
Sbjct: 75 VQAMVLCPTRELADQVTQEIRRLA 98
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 66 SLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125
+T ++L +PE +L+ +++ GY P+ IQ E++P+L D + AQTG+GKT +
Sbjct: 6 DMTFKDL---KLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFA 62
Query: 126 LLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163
L + + ++ ++ Q +++ PTREL +QV + +V A+
Sbjct: 63 LPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYAS 100
>gi|430822251|ref|ZP_19440830.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430864747|ref|ZP_19480572.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|431743685|ref|ZP_19532561.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430443309|gb|ELA53294.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430553528|gb|ELA93214.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430606474|gb|ELB43825.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
Length = 449
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ PT++Q +P++ ++ I +QTG+GKT T+LL +F +NA++ VQ VI P+R
Sbjct: 21 GFKQPTEVQERLIPLIVKGKNIIGQSQTGTGKTHTFLLPLFEKINAEKEEVQVVITAPSR 80
Query: 149 ELGMQVTKVARVLA 162
EL Q+ + A +A
Sbjct: 81 ELAAQIYEAATQIA 94
>gi|348527894|ref|XP_003451454.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Oreochromis niloticus]
Length = 1038
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q V +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 360 IKTWVQCGVSMKILNALKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 419
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR + +VI+ PTREL +Q+TK
Sbjct: 420 FRHIMDQRPLEESEGPISVIMTPTRELALQITK 452
>gi|440493283|gb|ELQ75775.1| ATP-dependent RNA helicase [Trachipleistophora hominis]
Length = 934
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS-LVNAQRSA- 138
V+R +D GY P+ +Q++ L S + ++ A+ G+GKTL YLL I + ++ A+ S
Sbjct: 567 VVRALDSLGYKYPSPVQKQVLST--SRNNLVVRAKNGTGKTLAYLLPILNNILKAEESKR 624
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
V+ +I+VPTREL MQV KVA+ LA
Sbjct: 625 VKTIILVPTRELAMQVAKVAKRLA 648
>gi|170757010|ref|YP_001781328.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
Length = 421
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151
+PT+IQ +A+P+ ++D I ++TG+GKTL YLL I + ++ +QA+I+ PT EL
Sbjct: 25 IPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPILEKITTEKREMQAIILAPTHELA 84
Query: 152 MQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194
MQ+ + ++ S+++++ K MA++ ++R LK
Sbjct: 85 MQINNEIKNIS---SNSNMDVKS---MAIIGEANIKRQIEKLK 121
>gi|432895747|ref|XP_004076142.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Oryzias
latipes]
Length = 1043
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q V +L + + GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 366 IKTWVQCGVSMKILSALKKQGYDKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 425
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR + +VI+ PTREL +Q+TK
Sbjct: 426 FRHIMDQRPLEESEGPISVIMTPTRELALQITK 458
>gi|402080882|gb|EJT76027.1| ATP-dependent RNA helicase DHH1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 539
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 64 EAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALEKINPKVSKIQCLILVP 123
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 124 TRELAMQTSQVCKTLG--------KHLGVNVMVTTGGTTLR 156
>gi|242022035|ref|XP_002431447.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212516735|gb|EEB18709.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 636
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 74 QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL----LIF 129
+G V E+ L+ + + G+ T+IQ +++P L RD + A+TGSGKTL +L+ LI+
Sbjct: 147 EGKVCENTLKAIVDMGFTTMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPVVELIY 206
Query: 130 SLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
L R+ V A+I+ PTREL MQ V + L
Sbjct: 207 KLKFLPRNGVGAIIISPTRELSMQTFGVLKEL 238
>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFS 130
E G +P +++ + G+ PT IQ + +P+ S RD + AQTGSGKTL Y ++ S
Sbjct: 112 EFEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAY--VVPS 169
Query: 131 LVNAQRSAV-------QAVIVVPTRELGMQVTKVARVLAAKPS 166
LV+ Q A A+I+ PTREL Q+ +VA ++ S
Sbjct: 170 LVHIQHQATIRRGDGPIALILAPTRELAQQIQQVATDFGSRVS 212
>gi|412993031|emb|CCO16564.1| predicted protein [Bathycoccus prasinos]
Length = 910
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ- 135
+P + R + GY LPT IQR+A+PV+ + D + A+TGSGKT +++ + + +
Sbjct: 76 LPPDIFRAIKRKGYRLPTPIQRKAIPVISTGVDVVAMARTGSGKTAAFVVPVLAALQKHS 135
Query: 136 -RSAVQAVIVVPTRELGMQVTKVARVLA 162
R+ +A+I+ PTREL +Q V R +A
Sbjct: 136 LRNGARALILAPTRELALQTFAVTRDMA 163
>gi|423069112|ref|ZP_17057900.1| hypothetical protein HMPREF9682_01121 [Streptococcus intermedius
F0395]
gi|355365512|gb|EHG13235.1| hypothetical protein HMPREF9682_01121 [Streptococcus intermedius
F0395]
Length = 447
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
+V T++Q + +P++ + RD + ++TGSGKT T+LL IF +N VQAVI P+R
Sbjct: 20 NFVEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQKMNEDADNVQAVITAPSR 79
Query: 149 ELGMQVTKVARVLA 162
EL Q+ + AR +A
Sbjct: 80 ELATQIYQAARQIA 93
>gi|326499824|dbj|BAJ90747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 518
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 13/129 (10%)
Query: 38 SISWKP-LRAVLSSSAVSIEELAAGTGN---NSLTLRELCQGHVPEHVLRRMDETGYVLP 93
S WK L+ + + E++ A GN + REL G + E G+ P
Sbjct: 117 SQDWKAQLKLPPADTRFRTEDVTATKGNEFEDYFLKRELLMG---------IYEKGFEKP 167
Query: 94 TDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQ 153
+ IQ E++P+ + D + A+ G+GKT + + ++ R+A+Q VIVVPTREL +Q
Sbjct: 168 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDRNAIQVVIVVPTRELALQ 227
Query: 154 VTKVARVLA 162
++V + L
Sbjct: 228 TSQVCKELG 236
>gi|320163628|gb|EFW40527.1| cytoplasmic DExD/H-box RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 602
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%)
Query: 76 HVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ 135
H+ +L + E GY P+ IQ E++PV + R + A+ G+GKT YL+ + +++
Sbjct: 226 HLKRELLMGIFEKGYENPSPIQEESIPVALAGRHVLARAKNGTGKTAAYLIPLLEMIDTG 285
Query: 136 RSAVQAVIVVPTRELGMQVTKVARVLA 162
+ +QAV++VPTREL +Q +++ + L
Sbjct: 286 KPHIQAVVLVPTRELALQTSQLCKELG 312
>gi|358394480|gb|EHK43873.1| hypothetical protein TRIATDRAFT_37339 [Trichoderma atroviride IMI
206040]
Length = 514
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 66 EAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPALERINPKISKIQCLILVP 125
Query: 147 TRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 126 TRELAMQTSQVCKNLG--------KHLGVNVMVTTGGTGLR 158
>gi|354584867|ref|ZP_09003759.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353191418|gb|EHB56925.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 447
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR 136
+ E + R+ E G V P+ +Q EA+P + + +D + +QTG+GKTL YLL I ++ +
Sbjct: 11 IAEDLTARLSEFGIVAPSPVQAEAIPPILAGKDVLATSQTGTGKTLAYLLPILQGIDPEV 70
Query: 137 SAVQAVIVVPTRELGMQVTK 156
A Q +IV PT+EL +Q+ +
Sbjct: 71 KAAQKLIVAPTQELAIQIVR 90
>gi|237734407|ref|ZP_04564888.1| helicase [Mollicutes bacterium D7]
gi|229382637|gb|EEO32728.1| helicase [Coprobacillus sp. D7]
Length = 448
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E L+ ++E G+ PT IQ + +P+++ + D I +QTG+GKT +LL + ++ + ++
Sbjct: 3 EFCLQTIEELGFQKPTSIQEQVIPLVYKNSDIIGISQTGTGKTHAFLLPVMDRIDPKNNS 62
Query: 139 VQAVIVVPTRELGMQVTKVARVLAAKPSD 167
VQAVI PTREL Q+ A++ S+
Sbjct: 63 VQAVITAPTRELATQIYNNAKLFTKYNSE 91
>gi|224068070|ref|XP_002188600.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Taeniopygia
guttata]
Length = 1031
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L + + GY PT IQ +A+P + + RD I A+TGSGKT+ +LL +
Sbjct: 371 IKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR+ + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRALEEGEGPIAVIMTPTRELALQITK 463
>gi|409122137|ref|ZP_11221532.1| DEAD/DEAH box helicase [Gillisia sp. CBA3202]
Length = 446
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFS-SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAV 139
+++ ++E +PT+IQ + +P+L S S D + A+TG+GKT + L + L+N + + +
Sbjct: 14 IIKSLEELNIAVPTEIQEKTIPILLSKSDDFVGLAKTGTGKTAAFGLPLLQLINTEETHI 73
Query: 140 QAVIVVPTRELGMQV 154
QAVI+VPTRELG Q+
Sbjct: 74 QAVILVPTRELGHQI 88
>gi|418965605|ref|ZP_13517370.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383342097|gb|EID20336.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 447
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
+V T++Q + +P++ + RD + ++TGSGKT T+LL IF +N VQAVI P+R
Sbjct: 20 NFVEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQKMNEDADNVQAVITAPSR 79
Query: 149 ELGMQVTKVARVLA 162
EL Q+ + AR +A
Sbjct: 80 ELATQIYQAARQIA 93
>gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 458
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 85 MDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144
+D G+ T IQ++ALP + +D I +TGSGKT+T+ L I + +N +R +Q +++
Sbjct: 18 LDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILNNLNVERFRIQTLVL 77
Query: 145 VPTRELGMQVTKVARVLA 162
PTREL QV K R LA
Sbjct: 78 CPTRELADQVAKEIRTLA 95
>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|384361412|ref|YP_006199264.1| ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
Length = 497
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 79 EHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
E +L+ + GY +P+ +QRE +P L ++ ++ ++TGSGKT ++ + + +N +
Sbjct: 12 EKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDCNN 71
Query: 139 VQAVIVVPTRELGMQV 154
+QA+IVVPTREL +QV
Sbjct: 72 IQALIVVPTRELALQV 87
>gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40]
gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 398
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 12/117 (10%)
Query: 81 VLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV--NAQRSA 138
+L+ +++ GY PT IQ +A+P + + RD + AQTG+GKT +++L I A R A
Sbjct: 12 ILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPILQTFKDKANRRA 71
Query: 139 --VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWL 193
++A+I+VPTREL +QV R+ A H T MA++ G + K+ L
Sbjct: 72 KRIKALILVPTRELAIQVEDNIRLYGA--------HLSLTSMAMVGGVDIEPQKAKL 120
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 9/88 (10%)
Query: 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV-- 132
G +PE +LR + E+GY PT IQ++A+PV+ S RD + AQTG+GKT + L + +
Sbjct: 7 GLIPE-LLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQRLAR 65
Query: 133 ------NAQRSAVQAVIVVPTRELGMQV 154
+ R V+A+I+ PTREL MQV
Sbjct: 66 HASTSTSPARHPVRALILAPTRELAMQV 93
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,921,851,682
Number of Sequences: 23463169
Number of extensions: 107306133
Number of successful extensions: 339276
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 20038
Number of HSP's successfully gapped in prelim test: 4759
Number of HSP's that attempted gapping in prelim test: 305733
Number of HSP's gapped (non-prelim): 25387
length of query: 202
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 67
effective length of database: 9,191,667,552
effective search space: 615841725984
effective search space used: 615841725984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)