Query 028848
Match_columns 202
No_of_seqs 204 out of 1693
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 99.9 1.9E-23 6.6E-28 176.9 8.8 124 58-188 80-205 (300)
2 3fe2_A Probable ATP-dependent 99.9 1.5E-22 5.3E-27 165.4 13.7 124 68-199 27-155 (242)
3 2db3_A ATP-dependent RNA helic 99.9 2E-22 7E-27 178.1 14.4 124 68-199 54-182 (434)
4 3ber_A Probable ATP-dependent 99.9 4.6E-22 1.6E-26 163.8 12.9 123 69-199 42-164 (249)
5 1vec_A ATP-dependent RNA helic 99.9 9.8E-22 3.3E-26 156.0 13.8 122 71-199 4-125 (206)
6 3iuy_A Probable ATP-dependent 99.9 1.5E-21 5.2E-26 157.7 14.0 127 62-199 14-146 (228)
7 3bor_A Human initiation factor 99.9 1.6E-21 5.3E-26 159.1 11.2 122 70-199 30-152 (237)
8 2oxc_A Probable ATP-dependent 99.9 6E-21 2.1E-25 154.8 14.1 121 71-199 25-145 (230)
9 1wrb_A DJVLGB; RNA helicase, D 99.9 1.2E-21 4.1E-26 160.8 9.9 123 69-199 22-153 (253)
10 1t6n_A Probable ATP-dependent 99.9 8E-21 2.7E-25 152.5 14.0 122 71-199 15-137 (220)
11 1q0u_A Bstdead; DEAD protein, 99.9 1.6E-21 5.5E-26 156.8 9.7 125 71-199 5-129 (219)
12 2i4i_A ATP-dependent RNA helic 99.9 9.6E-21 3.3E-25 164.4 15.2 122 70-199 15-154 (417)
13 3ly5_A ATP-dependent RNA helic 99.9 8.3E-21 2.9E-25 157.4 13.8 115 77-199 61-179 (262)
14 2pl3_A Probable ATP-dependent 99.9 1.7E-20 5.7E-25 152.3 15.2 124 67-199 22-149 (236)
15 1qde_A EIF4A, translation init 99.8 5.7E-21 1.9E-25 153.6 11.1 117 70-194 14-130 (224)
16 2gxq_A Heat resistant RNA depe 99.8 3.1E-20 1.1E-24 147.2 13.9 118 72-199 3-123 (207)
17 2j0s_A ATP-dependent RNA helic 99.8 2.9E-20 9.9E-25 161.4 13.2 121 71-199 38-158 (410)
18 3dkp_A Probable ATP-dependent 99.8 1.3E-20 4.5E-25 153.7 9.6 105 61-165 19-125 (245)
19 1xti_A Probable ATP-dependent 99.8 2.4E-19 8.3E-24 154.1 13.7 123 70-199 8-131 (391)
20 3fht_A ATP-dependent RNA helic 99.8 2.2E-19 7.4E-24 155.2 12.5 126 54-186 9-136 (412)
21 3fmp_B ATP-dependent RNA helic 99.8 5.9E-20 2E-24 163.4 8.5 119 61-186 83-203 (479)
22 1s2m_A Putative ATP-dependent 99.8 4.6E-19 1.6E-23 153.1 13.3 121 71-199 22-142 (400)
23 3sqw_A ATP-dependent RNA helic 99.8 7.5E-19 2.6E-23 160.3 14.6 134 62-199 12-153 (579)
24 3i5x_A ATP-dependent RNA helic 99.8 1E-18 3.5E-23 158.2 14.6 133 63-199 64-204 (563)
25 3eiq_A Eukaryotic initiation f 99.8 7.8E-19 2.7E-23 152.0 12.8 122 70-199 40-162 (414)
26 1fuu_A Yeast initiation factor 99.8 9E-19 3.1E-23 150.5 11.6 116 71-194 22-137 (394)
27 3pey_A ATP-dependent RNA helic 99.8 5.5E-18 1.9E-22 145.2 12.3 96 70-165 5-102 (395)
28 1hv8_A Putative ATP-dependent 99.7 1.1E-17 3.8E-22 142.0 13.3 115 71-194 7-122 (367)
29 2z0m_A 337AA long hypothetical 99.7 6.1E-17 2.1E-21 136.0 14.8 104 77-194 1-104 (337)
30 3oiy_A Reverse gyrase helicase 99.7 5.4E-17 1.8E-21 141.5 11.5 105 82-199 11-120 (414)
31 2ykg_A Probable ATP-dependent 99.6 1.1E-15 3.9E-20 141.3 12.0 109 83-199 4-114 (696)
32 3tbk_A RIG-I helicase domain; 99.6 1.8E-15 6.1E-20 135.2 12.0 100 92-199 4-105 (555)
33 4a2p_A RIG-I, retinoic acid in 99.6 1.5E-15 5.1E-20 136.0 11.0 103 89-199 4-108 (556)
34 4ddu_A Reverse gyrase; topoiso 99.6 2.8E-15 9.7E-20 146.0 13.0 99 88-199 75-177 (1104)
35 3fho_A ATP-dependent RNA helic 99.6 3.2E-16 1.1E-20 141.0 5.0 98 68-165 117-216 (508)
36 4a2q_A RIG-I, retinoic acid in 99.6 5.5E-15 1.9E-19 139.5 11.9 104 88-199 244-349 (797)
37 1tf5_A Preprotein translocase 99.6 5E-15 1.7E-19 139.4 9.8 98 87-200 79-176 (844)
38 2zj8_A DNA helicase, putative 99.6 5.5E-15 1.9E-19 137.9 9.7 103 72-186 3-107 (720)
39 2va8_A SSO2462, SKI2-type heli 99.6 1.2E-14 4E-19 135.5 11.5 103 72-185 10-113 (715)
40 1gm5_A RECG; helicase, replica 99.5 3.2E-14 1.1E-18 134.2 13.2 108 80-199 357-474 (780)
41 2v1x_A ATP-dependent DNA helic 99.5 3.5E-14 1.2E-18 130.3 12.3 99 74-190 25-124 (591)
42 1oyw_A RECQ helicase, ATP-depe 99.5 1.4E-14 4.7E-19 131.1 9.4 86 70-161 2-88 (523)
43 3b6e_A Interferon-induced heli 99.5 2.7E-14 9.1E-19 113.1 9.1 103 88-199 29-135 (216)
44 2p6r_A Afuhel308 helicase; pro 99.5 3.9E-15 1.3E-19 138.5 4.8 97 77-185 10-106 (702)
45 1gku_B Reverse gyrase, TOP-RG; 99.5 4E-14 1.4E-18 137.4 11.5 94 87-193 53-150 (1054)
46 4a2w_A RIG-I, retinoic acid in 99.5 3.2E-14 1.1E-18 136.6 9.3 104 88-199 244-349 (936)
47 2fsf_A Preprotein translocase 99.5 2.3E-14 7.8E-19 134.8 7.8 97 88-200 71-167 (853)
48 1nkt_A Preprotein translocase 99.5 1.2E-13 3.9E-18 130.5 9.0 97 88-200 108-204 (922)
49 2ipc_A Preprotein translocase 99.5 1.5E-13 5.3E-18 129.7 9.4 97 88-200 76-172 (997)
50 4gl2_A Interferon-induced heli 99.4 1.4E-13 4.8E-18 127.3 8.0 99 92-199 7-109 (699)
51 3l9o_A ATP-dependent RNA helic 99.4 1.8E-13 6.2E-18 133.3 8.4 86 75-163 167-252 (1108)
52 4f92_B U5 small nuclear ribonu 99.4 8.5E-13 2.9E-17 133.2 12.0 100 77-185 911-1012(1724)
53 4f92_B U5 small nuclear ribonu 99.4 7.2E-13 2.5E-17 133.7 10.7 91 89-187 76-175 (1724)
54 2oca_A DAR protein, ATP-depend 99.4 6.4E-13 2.2E-17 118.7 9.2 89 91-189 112-200 (510)
55 1rif_A DAR protein, DNA helica 99.3 3.5E-12 1.2E-16 106.0 9.9 84 92-185 113-196 (282)
56 2eyq_A TRCF, transcription-rep 99.3 1.2E-11 4.3E-16 120.9 14.6 111 77-199 588-709 (1151)
57 2xgj_A ATP-dependent RNA helic 99.3 8.9E-12 3E-16 120.5 11.7 74 86-163 81-154 (1010)
58 1wp9_A ATP-dependent RNA helic 99.3 2.2E-11 7.4E-16 105.8 11.8 96 92-199 9-104 (494)
59 4a4z_A Antiviral helicase SKI2 99.3 6.6E-12 2.3E-16 121.3 9.3 71 88-162 36-106 (997)
60 2jlq_A Serine protease subunit 99.2 2.3E-12 7.9E-17 114.3 1.8 70 89-161 1-71 (451)
61 2whx_A Serine protease/ntpase/ 99.2 8.1E-13 2.8E-17 121.8 -1.8 80 77-159 157-236 (618)
62 2wv9_A Flavivirin protease NS2 99.2 3.8E-13 1.3E-17 125.1 -4.2 76 84-161 202-293 (673)
63 3llm_A ATP-dependent RNA helic 99.2 7.2E-11 2.5E-15 95.7 9.4 75 89-163 58-134 (235)
64 2fwr_A DNA repair protein RAD2 99.2 6.2E-11 2.1E-15 104.8 9.5 64 92-161 93-156 (472)
65 3crv_A XPD/RAD3 related DNA he 99.2 5.5E-11 1.9E-15 108.0 8.1 79 92-184 3-85 (551)
66 4a15_A XPD helicase, ATP-depen 99.1 7.7E-11 2.6E-15 108.7 7.8 84 92-185 3-90 (620)
67 2fz4_A DNA repair protein RAD2 99.1 4.2E-10 1.5E-14 91.7 9.3 65 91-161 92-156 (237)
68 1yks_A Genome polyprotein [con 98.9 3.7E-10 1.3E-14 99.9 4.0 56 104-161 5-60 (440)
69 2z83_A Helicase/nucleoside tri 98.9 3E-10 1E-14 101.0 3.0 55 103-159 17-71 (459)
70 2vl7_A XPD; helicase, unknown 98.9 1.7E-09 5.9E-14 98.0 7.7 66 89-161 5-74 (540)
71 2v6i_A RNA helicase; membrane, 98.9 1.5E-09 5.2E-14 95.7 4.9 52 106-159 1-52 (431)
72 2xau_A PRE-mRNA-splicing facto 98.9 5.3E-09 1.8E-13 98.6 8.9 90 70-162 72-164 (773)
73 3h1t_A Type I site-specific re 98.8 2.4E-09 8.2E-14 97.4 4.8 73 91-163 177-261 (590)
74 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 8.6E-09 2.9E-13 99.9 8.4 71 92-163 271-355 (1038)
75 3o8b_A HCV NS3 protease/helica 98.7 1.7E-09 6E-14 100.2 0.6 64 94-163 219-282 (666)
76 3rc3_A ATP-dependent RNA helic 98.5 6.7E-08 2.3E-12 89.9 6.1 52 103-161 151-202 (677)
77 1z63_A Helicase of the SNF2/RA 98.5 4.4E-07 1.5E-11 80.5 10.2 70 92-163 37-110 (500)
78 3dmq_A RNA polymerase-associat 98.4 5.9E-07 2E-11 86.6 9.0 70 91-162 152-223 (968)
79 3jux_A Protein translocase sub 98.3 1.4E-06 4.9E-11 81.3 7.5 81 88-182 72-152 (822)
80 3mwy_W Chromo domain-containin 98.2 6.1E-06 2.1E-10 77.9 10.2 71 92-163 236-310 (800)
81 1w36_D RECD, exodeoxyribonucle 98.1 3.5E-06 1.2E-10 77.4 6.8 68 94-162 151-220 (608)
82 4b3f_X DNA-binding protein smu 98.0 1.8E-05 6.1E-10 73.0 9.5 67 92-161 189-256 (646)
83 1z3i_X Similar to RAD54-like; 98.0 2.5E-05 8.6E-10 72.0 10.4 72 92-164 55-139 (644)
84 2gk6_A Regulator of nonsense t 97.7 0.00012 4E-09 67.3 8.9 70 90-161 178-247 (624)
85 2xzl_A ATP-dependent helicase 97.7 0.00016 5.4E-09 68.5 9.7 69 90-161 358-427 (802)
86 3lfu_A DNA helicase II; SF1 he 97.6 0.0002 6.9E-09 65.3 8.8 71 91-163 8-79 (647)
87 2wjy_A Regulator of nonsense t 97.5 0.00033 1.1E-08 66.2 8.8 70 90-161 354-423 (800)
88 1c4o_A DNA nucleotide excision 97.4 0.00032 1.1E-08 65.0 7.5 68 89-163 6-78 (664)
89 3upu_A ATP-dependent DNA helic 97.3 0.00072 2.4E-08 59.7 8.6 70 87-158 20-94 (459)
90 3e1s_A Exodeoxyribonuclease V, 97.2 0.00097 3.3E-08 60.8 9.0 62 92-156 189-250 (574)
91 1uaa_A REP helicase, protein ( 97.2 0.00062 2.1E-08 62.8 7.8 71 92-164 2-73 (673)
92 3u4q_A ATP-dependent helicase/ 97.1 0.00091 3.1E-08 66.0 7.7 68 92-161 10-80 (1232)
93 1pjr_A PCRA; DNA repair, DNA r 97.1 0.0018 6E-08 60.5 8.9 71 91-163 10-81 (724)
94 2d7d_A Uvrabc system protein B 96.3 0.0089 3.1E-07 55.2 7.5 66 92-163 12-82 (661)
95 3ec2_A DNA replication protein 95.5 0.04 1.4E-06 41.6 7.1 33 94-126 16-57 (180)
96 3cpe_A Terminase, DNA packagin 94.9 0.16 5.5E-06 46.1 10.3 74 92-166 163-236 (592)
97 2o0j_A Terminase, DNA packagin 94.5 0.21 7.2E-06 43.2 9.5 73 92-165 163-235 (385)
98 2orw_A Thymidine kinase; TMTK, 93.7 0.094 3.2E-06 40.3 5.1 39 107-148 3-41 (184)
99 2dr3_A UPF0273 protein PH0284; 93.5 0.12 4.2E-06 40.4 5.8 52 106-161 22-73 (247)
100 1xx6_A Thymidine kinase; NESG, 92.7 0.11 3.9E-06 40.4 4.3 39 107-148 8-46 (191)
101 3co5_A Putative two-component 92.6 0.12 4.1E-06 37.7 4.1 20 105-124 25-44 (143)
102 2b8t_A Thymidine kinase; deoxy 92.6 0.12 4.1E-06 41.3 4.3 40 106-148 11-50 (223)
103 3vkw_A Replicase large subunit 92.6 0.067 2.3E-06 47.2 3.1 43 110-160 164-206 (446)
104 3n70_A Transport activator; si 92.2 0.14 4.8E-06 37.4 4.1 20 105-124 22-41 (145)
105 2zts_A Putative uncharacterize 91.7 0.2 6.8E-06 39.2 4.7 50 107-160 30-80 (251)
106 1w4r_A Thymidine kinase; type 91.7 0.17 5.8E-06 39.7 4.2 39 106-147 19-57 (195)
107 1e9r_A Conjugal transfer prote 91.6 0.24 8.4E-06 42.7 5.5 43 107-152 53-95 (437)
108 3bh0_A DNAB-like replicative h 91.5 0.43 1.5E-05 39.7 6.8 56 101-160 58-117 (315)
109 2w58_A DNAI, primosome compone 91.4 0.35 1.2E-05 36.8 5.7 24 108-132 55-78 (202)
110 2w0m_A SSO2452; RECA, SSPF, un 91.3 0.49 1.7E-05 36.3 6.5 52 107-162 23-74 (235)
111 3u4q_B ATP-dependent helicase/ 91.0 0.35 1.2E-05 47.3 6.5 48 111-159 5-52 (1166)
112 2kjq_A DNAA-related protein; s 90.9 0.21 7.1E-06 36.9 3.8 21 106-126 35-55 (149)
113 2oap_1 GSPE-2, type II secreti 90.8 0.37 1.3E-05 43.1 6.0 21 104-124 257-277 (511)
114 2qgz_A Helicase loader, putati 90.8 0.5 1.7E-05 39.2 6.4 20 107-126 152-171 (308)
115 2j9r_A Thymidine kinase; TK1, 90.6 0.3 1E-05 38.8 4.7 40 107-149 28-67 (214)
116 3bos_A Putative DNA replicatio 89.8 0.44 1.5E-05 36.7 5.0 19 107-125 52-70 (242)
117 2z43_A DNA repair and recombin 89.8 0.37 1.3E-05 40.1 4.8 62 100-161 95-165 (324)
118 3b85_A Phosphate starvation-in 88.8 0.45 1.5E-05 37.3 4.4 35 91-125 6-40 (208)
119 1l8q_A Chromosomal replication 88.7 0.75 2.5E-05 37.8 5.9 18 107-124 37-54 (324)
120 3nwn_A Kinesin-like protein KI 88.4 0.32 1.1E-05 41.7 3.5 23 102-124 98-122 (359)
121 2chg_A Replication factor C sm 88.1 1.7 5.9E-05 32.5 7.3 17 108-124 39-55 (226)
122 1bg2_A Kinesin; motor protein, 87.8 0.39 1.3E-05 40.5 3.6 23 102-124 71-95 (325)
123 1jbk_A CLPB protein; beta barr 87.8 0.26 8.9E-06 36.3 2.3 17 108-124 44-60 (195)
124 3hr8_A Protein RECA; alpha and 87.8 0.76 2.6E-05 39.2 5.5 46 100-148 48-99 (356)
125 1nlf_A Regulatory protein REPA 87.4 1.1 3.8E-05 36.1 6.1 56 105-162 28-91 (279)
126 2i1q_A DNA repair and recombin 87.3 0.72 2.4E-05 38.1 5.0 62 100-161 86-166 (322)
127 3io5_A Recombination and repai 87.3 0.68 2.3E-05 39.2 4.8 42 109-151 30-71 (333)
128 3dc4_A Kinesin-like protein NO 87.1 0.39 1.3E-05 40.9 3.2 22 103-124 89-112 (344)
129 4a14_A Kinesin, kinesin-like p 87.1 0.45 1.5E-05 40.4 3.6 22 103-124 78-101 (344)
130 2vvg_A Kinesin-2; motor protei 87.0 0.46 1.6E-05 40.5 3.6 22 103-124 84-107 (350)
131 1u94_A RECA protein, recombina 87.0 0.65 2.2E-05 39.5 4.6 38 107-147 63-100 (356)
132 1kgd_A CASK, peripheral plasma 86.9 0.31 1.1E-05 36.8 2.3 20 106-125 4-23 (180)
133 2y65_A Kinesin, kinesin heavy 86.8 0.47 1.6E-05 40.7 3.6 22 103-124 79-102 (365)
134 2orv_A Thymidine kinase; TP4A 86.8 0.65 2.2E-05 37.4 4.2 41 106-149 18-58 (234)
135 2h58_A Kinesin-like protein KI 86.8 0.48 1.6E-05 40.0 3.6 25 100-124 72-98 (330)
136 4a1f_A DNAB helicase, replicat 86.7 1.5 5E-05 37.1 6.6 48 107-158 46-93 (338)
137 3gbj_A KIF13B protein; kinesin 86.7 0.46 1.6E-05 40.5 3.5 24 101-124 85-110 (354)
138 4ag6_A VIRB4 ATPase, type IV s 86.6 0.99 3.4E-05 38.3 5.6 42 106-150 34-75 (392)
139 3b6u_A Kinesin-like protein KI 86.6 0.47 1.6E-05 40.8 3.5 22 103-124 96-119 (372)
140 2r44_A Uncharacterized protein 86.6 0.34 1.2E-05 40.0 2.6 24 101-124 40-63 (331)
141 1lvg_A Guanylate kinase, GMP k 86.5 0.37 1.3E-05 37.1 2.6 20 106-125 3-22 (198)
142 2zfi_A Kinesin-like protein KI 86.5 0.5 1.7E-05 40.5 3.6 23 102-124 83-107 (366)
143 1t5c_A CENP-E protein, centrom 86.5 0.48 1.6E-05 40.3 3.5 23 102-124 71-95 (349)
144 1ofh_A ATP-dependent HSL prote 86.5 1.5 5.2E-05 35.2 6.4 18 107-124 50-67 (310)
145 2nr8_A Kinesin-like protein KI 86.5 0.48 1.6E-05 40.5 3.5 24 101-124 96-121 (358)
146 1p9r_A General secretion pathw 86.4 1.5 5.1E-05 38.1 6.7 38 95-133 153-192 (418)
147 2ehv_A Hypothetical protein PH 86.4 0.98 3.3E-05 35.1 5.1 23 106-128 29-51 (251)
148 1goj_A Kinesin, kinesin heavy 86.4 0.47 1.6E-05 40.5 3.4 22 103-124 75-98 (355)
149 2bjv_A PSP operon transcriptio 86.3 0.66 2.2E-05 37.0 4.1 19 106-124 28-46 (265)
150 3lre_A Kinesin-like protein KI 86.3 0.48 1.6E-05 40.4 3.4 22 103-124 100-123 (355)
151 2gza_A Type IV secretion syste 86.3 0.43 1.5E-05 40.5 3.1 21 104-124 172-192 (361)
152 3vaa_A Shikimate kinase, SK; s 85.9 0.41 1.4E-05 36.6 2.5 21 105-125 23-43 (199)
153 2p65_A Hypothetical protein PF 85.8 0.28 9.6E-06 36.1 1.5 19 107-125 43-61 (187)
154 1x88_A Kinesin-like protein KI 85.8 0.49 1.7E-05 40.5 3.2 23 102-124 82-106 (359)
155 2cvh_A DNA repair and recombin 85.8 1.1 3.6E-05 34.2 4.9 35 107-147 20-54 (220)
156 3syl_A Protein CBBX; photosynt 85.7 0.37 1.3E-05 39.2 2.3 18 108-125 68-85 (309)
157 3hws_A ATP-dependent CLP prote 85.7 0.86 2.9E-05 38.3 4.7 19 106-124 50-68 (363)
158 2zr9_A Protein RECA, recombina 85.7 0.99 3.4E-05 38.2 5.1 37 107-146 61-97 (349)
159 2wbe_C Bipolar kinesin KRP-130 85.5 0.52 1.8E-05 40.5 3.3 22 103-124 95-118 (373)
160 3nbx_X ATPase RAVA; AAA+ ATPas 85.4 0.55 1.9E-05 41.9 3.5 27 98-124 32-58 (500)
161 3lw7_A Adenylate kinase relate 85.4 0.39 1.3E-05 35.0 2.1 16 109-124 3-18 (179)
162 4etp_A Kinesin-like protein KA 85.2 0.7 2.4E-05 40.1 4.0 25 100-124 132-158 (403)
163 3t0q_A AGR253WP; kinesin, alph 85.2 0.46 1.6E-05 40.5 2.7 25 100-124 77-103 (349)
164 2heh_A KIF2C protein; kinesin, 85.1 0.57 2E-05 40.5 3.3 22 103-124 129-152 (387)
165 3tau_A Guanylate kinase, GMP k 85.0 0.47 1.6E-05 36.7 2.5 20 106-125 7-26 (208)
166 3bgw_A DNAB-like replicative h 85.0 1.8 6.1E-05 37.8 6.5 46 100-148 186-235 (444)
167 3u06_A Protein claret segregat 85.0 0.65 2.2E-05 40.5 3.6 25 100-124 130-156 (412)
168 1kag_A SKI, shikimate kinase I 84.9 0.56 1.9E-05 34.6 2.8 18 107-124 4-21 (173)
169 3tr0_A Guanylate kinase, GMP k 84.8 0.45 1.5E-05 36.1 2.3 19 106-124 6-24 (205)
170 2eyu_A Twitching motility prot 84.8 0.36 1.2E-05 39.2 1.8 20 105-124 23-42 (261)
171 2owm_A Nckin3-434, related to 84.7 0.67 2.3E-05 40.8 3.6 21 104-124 132-154 (443)
172 1qhx_A CPT, protein (chloramph 84.7 0.46 1.6E-05 35.2 2.3 18 107-124 3-20 (178)
173 3cf0_A Transitional endoplasmi 84.7 0.45 1.5E-05 39.0 2.4 19 106-124 48-66 (301)
174 3trf_A Shikimate kinase, SK; a 84.7 0.46 1.6E-05 35.5 2.3 20 107-126 5-24 (185)
175 3b9p_A CG5977-PA, isoform A; A 84.6 0.46 1.6E-05 38.5 2.4 18 107-124 54-71 (297)
176 2qz4_A Paraplegin; AAA+, SPG7, 84.5 0.45 1.5E-05 37.5 2.3 18 107-124 39-56 (262)
177 3h4m_A Proteasome-activating n 84.5 0.47 1.6E-05 38.1 2.4 19 106-124 50-68 (285)
178 2qor_A Guanylate kinase; phosp 84.5 0.45 1.5E-05 36.5 2.2 21 104-124 9-29 (204)
179 2pt7_A CAG-ALFA; ATPase, prote 84.4 0.53 1.8E-05 39.5 2.8 20 104-123 168-187 (330)
180 1v8k_A Kinesin-like protein KI 84.4 0.78 2.7E-05 40.0 3.9 22 103-124 149-172 (410)
181 3iij_A Coilin-interacting nucl 84.4 0.32 1.1E-05 36.3 1.3 21 105-125 9-29 (180)
182 3hjh_A Transcription-repair-co 84.4 1.5 5.3E-05 38.8 5.9 51 106-162 13-63 (483)
183 2j41_A Guanylate kinase; GMP, 84.4 0.48 1.6E-05 35.9 2.3 20 105-124 4-23 (207)
184 3cob_A Kinesin heavy chain-lik 84.3 0.62 2.1E-05 40.0 3.2 25 100-124 71-97 (369)
185 3bfn_A Kinesin-like protein KI 84.2 0.57 1.9E-05 40.5 2.9 32 93-124 75-116 (388)
186 3e2i_A Thymidine kinase; Zn-bi 84.1 1 3.6E-05 35.8 4.2 41 106-149 27-67 (219)
187 1xp8_A RECA protein, recombina 84.1 1.3 4.4E-05 37.9 5.1 38 107-147 74-111 (366)
188 1g5t_A COB(I)alamin adenosyltr 83.5 1.5 5.1E-05 34.3 4.8 34 108-144 29-62 (196)
189 4b4t_M 26S protease regulatory 83.5 0.5 1.7E-05 41.4 2.3 17 108-124 216-232 (434)
190 1zp6_A Hypothetical protein AT 83.4 0.47 1.6E-05 35.6 1.9 20 105-124 7-26 (191)
191 1v5w_A DMC1, meiotic recombina 83.3 1.2 4.1E-05 37.4 4.5 60 101-160 111-179 (343)
192 3te6_A Regulatory protein SIR3 83.2 0.38 1.3E-05 40.4 1.3 21 107-127 45-65 (318)
193 2rep_A Kinesin-like protein KI 83.2 0.59 2E-05 40.2 2.6 24 101-124 108-133 (376)
194 3uk6_A RUVB-like 2; hexameric 83.2 0.54 1.8E-05 39.2 2.3 17 108-124 71-87 (368)
195 1u0j_A DNA replication protein 83.1 3.1 0.00011 34.0 6.8 44 80-126 74-123 (267)
196 4b4t_J 26S protease regulatory 83.0 0.61 2.1E-05 40.6 2.6 17 108-124 183-199 (405)
197 1f9v_A Kinesin-like protein KA 83.0 0.77 2.6E-05 39.0 3.2 24 101-124 77-102 (347)
198 4gp7_A Metallophosphoesterase; 83.0 0.53 1.8E-05 35.2 2.0 20 106-125 8-27 (171)
199 1lv7_A FTSH; alpha/beta domain 82.9 0.58 2E-05 37.1 2.3 17 108-124 46-62 (257)
200 1z6g_A Guanylate kinase; struc 82.8 0.74 2.5E-05 35.9 2.8 20 105-124 21-40 (218)
201 1kht_A Adenylate kinase; phosp 82.8 0.61 2.1E-05 34.7 2.3 18 107-124 3-20 (192)
202 1njg_A DNA polymerase III subu 82.6 1.1 3.8E-05 33.9 3.8 16 109-124 47-62 (250)
203 1n0w_A DNA repair protein RAD5 82.5 1.7 5.8E-05 33.6 4.9 23 107-129 24-46 (243)
204 2ius_A DNA translocase FTSK; n 82.5 1.9 6.4E-05 38.6 5.7 27 107-133 167-193 (512)
205 1ly1_A Polynucleotide kinase; 82.5 0.66 2.2E-05 34.2 2.3 16 109-124 4-19 (181)
206 3t15_A Ribulose bisphosphate c 82.4 0.55 1.9E-05 38.5 2.0 17 108-124 37-53 (293)
207 3cm0_A Adenylate kinase; ATP-b 82.4 0.48 1.6E-05 35.4 1.5 19 106-124 3-21 (186)
208 1d2n_A N-ethylmaleimide-sensit 82.3 0.64 2.2E-05 37.2 2.3 17 108-124 65-81 (272)
209 3eie_A Vacuolar protein sortin 82.2 0.66 2.2E-05 38.4 2.4 17 108-124 52-68 (322)
210 3a00_A Guanylate kinase, GMP k 82.2 0.8 2.7E-05 34.6 2.7 17 108-124 2-18 (186)
211 2ze6_A Isopentenyl transferase 82.1 0.66 2.3E-05 37.2 2.3 17 110-126 4-20 (253)
212 2z4s_A Chromosomal replication 82.1 1.7 5.7E-05 37.8 5.1 17 108-124 131-147 (440)
213 2r6a_A DNAB helicase, replicat 81.8 2.5 8.7E-05 36.7 6.2 54 100-157 192-250 (454)
214 1ojl_A Transcriptional regulat 81.8 1.1 3.8E-05 36.9 3.7 19 106-124 24-42 (304)
215 4b4t_L 26S protease subunit RP 81.8 0.64 2.2E-05 40.8 2.3 17 108-124 216-232 (437)
216 1y63_A LMAJ004144AAA protein; 81.8 0.72 2.5E-05 34.8 2.3 19 106-124 9-27 (184)
217 4b4t_K 26S protease regulatory 81.5 0.67 2.3E-05 40.6 2.3 17 108-124 207-223 (428)
218 1ex7_A Guanylate kinase; subst 81.5 0.87 3E-05 35.1 2.7 17 108-124 2-18 (186)
219 3kb2_A SPBC2 prophage-derived 81.5 0.71 2.4E-05 33.7 2.2 16 109-124 3-18 (173)
220 1xwi_A SKD1 protein; VPS4B, AA 81.4 0.72 2.5E-05 38.3 2.4 17 108-124 46-62 (322)
221 3cmu_A Protein RECA, recombina 81.4 1.9 6.6E-05 44.7 5.8 45 101-148 1415-1465(2050)
222 1znw_A Guanylate kinase, GMP k 81.3 0.82 2.8E-05 35.1 2.6 22 103-124 16-37 (207)
223 1s96_A Guanylate kinase, GMP k 80.8 0.86 2.9E-05 35.9 2.5 22 104-125 13-34 (219)
224 2px0_A Flagellar biosynthesis 80.8 2 6.7E-05 35.4 4.8 22 107-128 105-126 (296)
225 2ewv_A Twitching motility prot 80.7 2 6.9E-05 36.5 5.0 20 105-124 134-153 (372)
226 1sxj_D Activator 1 41 kDa subu 80.7 1.2 4E-05 36.7 3.4 17 108-124 59-75 (353)
227 1w36_B RECB, exodeoxyribonucle 80.7 2.6 9E-05 41.3 6.4 55 106-161 16-79 (1180)
228 1um8_A ATP-dependent CLP prote 80.6 0.93 3.2E-05 38.2 2.8 18 107-124 72-89 (376)
229 4eun_A Thermoresistant glucoki 80.5 0.91 3.1E-05 34.6 2.5 19 106-124 28-46 (200)
230 3a8t_A Adenylate isopentenyltr 80.5 1 3.5E-05 38.2 3.0 20 108-127 41-60 (339)
231 2v1u_A Cell division control p 80.4 0.79 2.7E-05 38.0 2.3 18 107-124 44-61 (387)
232 1cr0_A DNA primase/helicase; R 80.3 1.8 6.3E-05 35.0 4.5 38 106-146 34-72 (296)
233 3cmw_A Protein RECA, recombina 80.2 1.6 5.4E-05 44.6 4.7 52 100-154 1418-1475(1706)
234 3foz_A TRNA delta(2)-isopenten 80.2 1.2 4.1E-05 37.4 3.4 19 109-127 12-30 (316)
235 3ney_A 55 kDa erythrocyte memb 80.2 0.95 3.2E-05 35.3 2.6 21 105-125 17-37 (197)
236 1knq_A Gluconate kinase; ALFA/ 80.1 0.77 2.6E-05 34.0 2.0 18 107-124 8-25 (175)
237 2q6t_A DNAB replication FORK h 80.0 3.1 0.00011 36.1 6.1 55 101-159 190-249 (444)
238 2qp9_X Vacuolar protein sortin 80.0 0.96 3.3E-05 38.1 2.7 17 108-124 85-101 (355)
239 3pfi_A Holliday junction ATP-d 80.0 0.93 3.2E-05 37.3 2.6 17 108-124 56-72 (338)
240 1ixz_A ATP-dependent metallopr 79.9 0.87 3E-05 36.0 2.3 16 109-124 51-66 (254)
241 2v54_A DTMP kinase, thymidylat 79.8 0.72 2.5E-05 34.9 1.7 19 106-124 3-21 (204)
242 2c9o_A RUVB-like 1; hexameric 79.7 0.86 2.9E-05 39.7 2.4 19 107-125 63-81 (456)
243 3exa_A TRNA delta(2)-isopenten 79.7 0.93 3.2E-05 38.2 2.5 19 109-127 5-23 (322)
244 2c95_A Adenylate kinase 1; tra 79.7 0.9 3.1E-05 34.0 2.3 20 105-124 7-26 (196)
245 2qby_B CDC6 homolog 3, cell di 79.3 4.6 0.00016 33.4 6.8 17 108-124 46-62 (384)
246 1m7g_A Adenylylsulfate kinase; 79.3 1.5 5E-05 33.7 3.4 31 93-124 12-42 (211)
247 4fcw_A Chaperone protein CLPB; 79.1 0.94 3.2E-05 36.7 2.3 16 109-124 49-64 (311)
248 1tue_A Replication protein E1; 79.1 1.6 5.3E-05 34.6 3.5 23 109-132 60-82 (212)
249 2r62_A Cell division protease 79.0 0.56 1.9E-05 37.3 0.9 17 108-124 45-61 (268)
250 2qmh_A HPR kinase/phosphorylas 79.0 1.1 3.8E-05 35.3 2.6 21 107-127 34-54 (205)
251 2bwj_A Adenylate kinase 5; pho 78.9 0.96 3.3E-05 33.9 2.2 20 105-124 10-29 (199)
252 3jvv_A Twitching mobility prot 78.9 0.94 3.2E-05 38.5 2.3 27 106-133 122-148 (356)
253 1hqc_A RUVB; extended AAA-ATPa 78.7 0.93 3.2E-05 36.9 2.2 17 108-124 39-55 (324)
254 3vfd_A Spastin; ATPase, microt 78.6 0.99 3.4E-05 38.3 2.4 18 107-124 148-165 (389)
255 2yvu_A Probable adenylyl-sulfa 78.5 2.6 8.9E-05 31.4 4.6 20 107-126 13-32 (186)
256 2iut_A DNA translocase FTSK; n 78.5 3 0.0001 37.8 5.6 26 108-133 215-240 (574)
257 4h1g_A Maltose binding protein 78.4 1.3 4.4E-05 41.1 3.3 25 100-124 454-480 (715)
258 4akg_A Glutathione S-transfera 78.3 6.2 0.00021 42.1 8.5 46 80-126 893-942 (2695)
259 4b4t_H 26S protease regulatory 78.2 0.85 2.9E-05 40.4 1.9 17 108-124 244-260 (467)
260 2x8a_A Nuclear valosin-contain 78.0 1.1 3.6E-05 36.5 2.3 16 109-124 46-61 (274)
261 3vkg_A Dynein heavy chain, cyt 78.0 6.7 0.00023 42.6 8.7 48 79-127 875-926 (3245)
262 3d8b_A Fidgetin-like protein 1 78.0 1.1 3.6E-05 37.8 2.4 18 107-124 117-134 (357)
263 3qf7_A RAD50; ABC-ATPase, ATPa 77.7 1.1 3.7E-05 38.1 2.3 16 109-124 25-40 (365)
264 1ak2_A Adenylate kinase isoenz 77.7 1 3.6E-05 35.2 2.1 19 106-124 15-33 (233)
265 1q57_A DNA primase/helicase; d 77.7 2.1 7.1E-05 37.7 4.3 54 101-158 232-290 (503)
266 4b4t_I 26S protease regulatory 77.6 1 3.6E-05 39.5 2.3 17 108-124 217-233 (437)
267 2bdt_A BH3686; alpha-beta prot 77.5 1.2 4E-05 33.4 2.3 18 109-126 4-21 (189)
268 2rhm_A Putative kinase; P-loop 77.4 1.1 3.6E-05 33.5 2.0 18 107-124 5-22 (193)
269 3crm_A TRNA delta(2)-isopenten 77.4 1.6 5.6E-05 36.6 3.4 18 109-126 7-24 (323)
270 2plr_A DTMP kinase, probable t 77.3 0.9 3.1E-05 34.4 1.6 19 106-124 3-21 (213)
271 3t61_A Gluconokinase; PSI-biol 77.3 1.2 4.1E-05 33.8 2.3 18 108-125 19-36 (202)
272 1g8p_A Magnesium-chelatase 38 77.2 0.75 2.6E-05 37.9 1.2 18 107-124 45-62 (350)
273 3kl4_A SRP54, signal recogniti 77.1 2.4 8.3E-05 37.0 4.5 34 109-145 99-132 (433)
274 1tev_A UMP-CMP kinase; ploop, 77.1 1.2 4.2E-05 33.0 2.3 18 107-124 3-20 (196)
275 2r8r_A Sensor protein; KDPD, P 77.0 3 0.0001 33.3 4.7 28 109-136 8-35 (228)
276 1iy2_A ATP-dependent metallopr 76.9 1.2 4.1E-05 35.8 2.3 16 109-124 75-90 (278)
277 1a5t_A Delta prime, HOLB; zinc 76.8 5.7 0.0002 32.8 6.6 34 94-127 4-44 (334)
278 3uie_A Adenylyl-sulfate kinase 76.7 1.1 3.9E-05 34.1 2.0 31 93-124 12-42 (200)
279 3bs4_A Uncharacterized protein 76.7 5.1 0.00017 32.5 6.1 51 107-161 21-71 (260)
280 3nwj_A ATSK2; P loop, shikimat 76.7 1.7 5.7E-05 35.0 3.1 21 105-125 46-66 (250)
281 1f2t_A RAD50 ABC-ATPase; DNA d 76.7 1.3 4.5E-05 32.5 2.3 15 110-124 26-40 (149)
282 2r2a_A Uncharacterized protein 76.5 1.9 6.6E-05 33.4 3.4 22 109-130 7-28 (199)
283 1zd8_A GTP:AMP phosphotransfer 76.4 1.2 4.1E-05 34.6 2.1 18 107-124 7-24 (227)
284 1vma_A Cell division protein F 76.3 2.9 9.9E-05 34.7 4.6 19 109-127 106-124 (306)
285 1ry6_A Internal kinesin; kines 76.3 2 6.9E-05 36.6 3.7 19 106-124 82-102 (360)
286 3dm5_A SRP54, signal recogniti 76.2 2.6 8.9E-05 37.0 4.4 34 109-145 102-135 (443)
287 2qby_A CDC6 homolog 1, cell di 76.2 4.4 0.00015 33.2 5.7 19 107-125 45-63 (386)
288 3d3q_A TRNA delta(2)-isopenten 76.0 1.9 6.5E-05 36.5 3.4 18 109-126 9-26 (340)
289 1iqp_A RFCS; clamp loader, ext 75.8 1.9 6.5E-05 34.8 3.3 16 109-124 48-63 (327)
290 1aky_A Adenylate kinase; ATP:A 75.8 1.4 4.8E-05 34.0 2.4 18 107-124 4-21 (220)
291 3lnc_A Guanylate kinase, GMP k 75.8 0.94 3.2E-05 35.3 1.4 19 106-124 26-44 (231)
292 1nks_A Adenylate kinase; therm 75.8 1.2 4.3E-05 33.0 2.0 16 109-124 3-18 (194)
293 1gvn_B Zeta; postsegregational 75.7 1.3 4.4E-05 36.3 2.2 17 108-124 34-50 (287)
294 1in4_A RUVB, holliday junction 75.7 1.5 5E-05 36.5 2.6 17 108-124 52-68 (334)
295 3kta_A Chromosome segregation 75.4 1.4 4.8E-05 32.7 2.2 16 109-124 28-43 (182)
296 2iyv_A Shikimate kinase, SK; t 75.2 1.7 5.7E-05 32.4 2.6 17 108-124 3-19 (184)
297 1e6c_A Shikimate kinase; phosp 74.8 1.5 5E-05 32.2 2.1 17 108-124 3-19 (173)
298 3c8u_A Fructokinase; YP_612366 74.8 1.3 4.4E-05 34.0 1.9 18 107-124 22-39 (208)
299 2zan_A Vacuolar protein sortin 74.7 1.4 5E-05 38.2 2.4 17 108-124 168-184 (444)
300 1qf9_A UMP/CMP kinase, protein 74.7 1.4 4.7E-05 32.7 2.0 16 109-124 8-23 (194)
301 2cdn_A Adenylate kinase; phosp 74.5 1.6 5.5E-05 33.1 2.4 17 108-124 21-37 (201)
302 1zak_A Adenylate kinase; ATP:A 74.5 1.7 5.7E-05 33.6 2.5 18 107-124 5-22 (222)
303 1fnn_A CDC6P, cell division co 74.5 2.2 7.5E-05 35.4 3.4 16 109-124 46-61 (389)
304 1np6_A Molybdopterin-guanine d 74.4 6 0.00021 29.8 5.6 24 109-133 8-31 (174)
305 1zu4_A FTSY; GTPase, signal re 74.4 3.4 0.00012 34.4 4.6 20 109-128 107-126 (320)
306 3fb4_A Adenylate kinase; psych 74.2 1.5 5.1E-05 33.5 2.2 16 109-124 2-17 (216)
307 3asz_A Uridine kinase; cytidin 74.2 1.4 4.7E-05 33.6 1.9 18 107-124 6-23 (211)
308 2pez_A Bifunctional 3'-phospho 74.1 1.5 5.1E-05 32.6 2.0 19 106-124 4-22 (179)
309 1via_A Shikimate kinase; struc 74.1 1.9 6.3E-05 31.9 2.6 16 109-124 6-21 (175)
310 1nn5_A Similar to deoxythymidy 74.0 1.4 4.9E-05 33.4 2.0 20 106-125 8-27 (215)
311 2wwf_A Thymidilate kinase, put 74.0 1.6 5.4E-05 33.1 2.2 20 106-125 9-28 (212)
312 3eph_A TRNA isopentenyltransfe 73.7 2.3 7.9E-05 37.0 3.4 18 110-127 5-22 (409)
313 4a74_A DNA repair and recombin 73.5 1.9 6.4E-05 33.0 2.6 21 107-127 25-45 (231)
314 3cmw_A Protein RECA, recombina 73.4 4.9 0.00017 41.1 6.0 38 107-147 34-71 (1706)
315 3hu3_A Transitional endoplasmi 73.3 1.7 5.7E-05 38.6 2.5 17 108-124 239-255 (489)
316 1ye8_A Protein THEP1, hypothet 73.3 1.8 6.1E-05 32.8 2.3 16 109-124 2-17 (178)
317 1zuh_A Shikimate kinase; alpha 73.2 1.7 5.7E-05 31.9 2.1 18 108-125 8-25 (168)
318 1ukz_A Uridylate kinase; trans 73.1 1.7 5.7E-05 32.9 2.2 16 109-124 17-32 (203)
319 3dl0_A Adenylate kinase; phosp 73.0 1.7 5.7E-05 33.3 2.2 16 109-124 2-17 (216)
320 1sxj_C Activator 1 40 kDa subu 72.8 4.3 0.00015 33.4 4.8 17 109-125 48-64 (340)
321 3a4m_A L-seryl-tRNA(SEC) kinas 72.7 1.6 5.5E-05 34.9 2.0 19 107-125 4-22 (260)
322 2pt5_A Shikimate kinase, SK; a 72.6 1.8 6.1E-05 31.6 2.1 16 109-124 2-17 (168)
323 1tf7_A KAIC; homohexamer, hexa 72.5 5 0.00017 35.5 5.4 49 106-158 280-328 (525)
324 3tif_A Uncharacterized ABC tra 72.4 2 6.8E-05 34.0 2.5 19 106-124 30-48 (235)
325 3auy_A DNA double-strand break 72.4 1.7 5.8E-05 36.8 2.2 15 110-124 28-42 (371)
326 3k1j_A LON protease, ATP-depen 72.3 3.2 0.00011 37.5 4.1 22 103-124 56-77 (604)
327 1rj9_A FTSY, signal recognitio 72.2 4.4 0.00015 33.5 4.7 19 107-125 102-120 (304)
328 1cke_A CK, MSSA, protein (cyti 72.1 1.9 6.6E-05 33.1 2.3 17 108-124 6-22 (227)
329 3pvs_A Replication-associated 72.1 1.8 6E-05 37.9 2.3 16 109-124 52-67 (447)
330 2pbr_A DTMP kinase, thymidylat 72.0 1.9 6.3E-05 32.1 2.2 15 110-124 3-17 (195)
331 2jaq_A Deoxyguanosine kinase; 71.9 1.8 6.3E-05 32.4 2.1 16 109-124 2-17 (205)
332 3b9q_A Chloroplast SRP recepto 71.9 4.3 0.00015 33.4 4.6 20 107-126 100-119 (302)
333 2v3c_C SRP54, signal recogniti 71.6 4.3 0.00015 35.3 4.7 34 109-145 101-134 (432)
334 2vli_A Antibiotic resistance p 71.6 1.5 5.1E-05 32.4 1.5 18 107-124 5-22 (183)
335 3pxg_A Negative regulator of g 71.5 2.5 8.6E-05 37.0 3.2 24 108-132 202-225 (468)
336 1sxj_E Activator 1 40 kDa subu 71.3 2.4 8.1E-05 34.9 2.8 17 109-125 38-54 (354)
337 1xjc_A MOBB protein homolog; s 71.3 5.9 0.0002 29.9 4.8 24 109-133 6-29 (169)
338 2if2_A Dephospho-COA kinase; a 71.2 2 6.8E-05 32.5 2.2 16 109-124 3-18 (204)
339 2i3b_A HCR-ntpase, human cance 71.0 2.5 8.5E-05 32.4 2.7 19 107-125 1-19 (189)
340 3be4_A Adenylate kinase; malar 70.7 2 7E-05 33.1 2.2 18 107-124 5-22 (217)
341 2bbw_A Adenylate kinase 4, AK4 70.7 2.1 7.3E-05 33.6 2.3 18 107-124 27-44 (246)
342 1jjv_A Dephospho-COA kinase; P 70.6 2.2 7.5E-05 32.4 2.3 15 110-124 5-19 (206)
343 2z0h_A DTMP kinase, thymidylat 70.5 2.1 7.2E-05 31.9 2.2 16 110-125 3-18 (197)
344 3cmu_A Protein RECA, recombina 70.3 4.1 0.00014 42.3 4.8 37 106-145 1080-1116(2050)
345 3m6a_A ATP-dependent protease 70.0 2.2 7.5E-05 38.2 2.5 19 106-124 107-125 (543)
346 2chq_A Replication factor C sm 69.9 2.1 7.1E-05 34.4 2.1 16 109-124 40-55 (319)
347 3tlx_A Adenylate kinase 2; str 69.7 2.1 7.1E-05 33.9 2.1 18 107-124 29-46 (243)
348 2cbz_A Multidrug resistance-as 69.7 2.5 8.5E-05 33.5 2.5 19 106-124 30-48 (237)
349 2qt1_A Nicotinamide riboside k 69.7 2.2 7.7E-05 32.4 2.2 19 106-124 20-38 (207)
350 1g41_A Heat shock protein HSLU 69.4 2.7 9.1E-05 36.9 2.8 18 107-124 50-67 (444)
351 3f9v_A Minichromosome maintena 69.4 2.3 7.9E-05 38.6 2.5 16 109-124 329-344 (595)
352 3qks_A DNA double-strand break 69.4 2.4 8.3E-05 32.6 2.3 16 109-124 25-40 (203)
353 2xxa_A Signal recognition part 69.3 5.5 0.00019 34.6 4.9 34 109-145 102-136 (433)
354 2v9p_A Replication protein E1; 68.9 2.8 9.5E-05 34.9 2.7 20 105-124 124-143 (305)
355 1sgw_A Putative ABC transporte 68.8 3 0.0001 32.6 2.8 19 106-124 34-52 (214)
356 1e4v_A Adenylate kinase; trans 68.8 2.2 7.6E-05 32.7 2.0 16 109-124 2-17 (214)
357 1sxj_A Activator 1 95 kDa subu 68.7 2.4 8.1E-05 37.6 2.4 18 108-125 78-95 (516)
358 1j8m_F SRP54, signal recogniti 68.1 5.7 0.00019 32.6 4.5 33 109-144 100-132 (297)
359 2ce7_A Cell division protein F 68.1 2.4 8.1E-05 37.5 2.2 17 108-124 50-66 (476)
360 1uf9_A TT1252 protein; P-loop, 68.1 2.4 8.1E-05 31.8 2.0 16 109-124 10-25 (203)
361 2pze_A Cystic fibrosis transme 67.8 2.9 9.8E-05 32.9 2.5 19 106-124 33-51 (229)
362 2og2_A Putative signal recogni 67.7 5.7 0.0002 33.7 4.5 18 109-126 159-176 (359)
363 2xb4_A Adenylate kinase; ATP-b 67.5 2.6 8.8E-05 32.7 2.1 16 109-124 2-17 (223)
364 1tf7_A KAIC; homohexamer, hexa 67.4 6.3 0.00022 34.8 4.9 27 106-132 38-64 (525)
365 1rz3_A Hypothetical protein rb 67.3 7.3 0.00025 29.5 4.7 17 108-124 23-39 (201)
366 3pxi_A Negative regulator of g 67.2 2.4 8.3E-05 39.3 2.2 25 107-132 201-225 (758)
367 3gfo_A Cobalt import ATP-bindi 67.1 2.9 9.9E-05 34.1 2.5 19 106-124 33-51 (275)
368 2ghi_A Transport protein; mult 67.0 3 0.0001 33.5 2.5 19 106-124 45-63 (260)
369 1g6h_A High-affinity branched- 66.9 3 0.0001 33.4 2.5 19 106-124 32-50 (257)
370 2pcj_A ABC transporter, lipopr 66.9 2.9 0.0001 32.7 2.4 19 106-124 29-47 (224)
371 1jr3_A DNA polymerase III subu 66.9 5.2 0.00018 32.9 4.1 16 109-124 40-55 (373)
372 4e22_A Cytidylate kinase; P-lo 66.8 3 0.0001 33.1 2.5 20 106-125 26-45 (252)
373 2ff7_A Alpha-hemolysin translo 66.8 3.1 0.0001 33.2 2.5 19 106-124 34-52 (247)
374 1ji0_A ABC transporter; ATP bi 66.7 3.1 0.00011 33.0 2.5 19 106-124 31-49 (240)
375 1ls1_A Signal recognition part 66.4 6.6 0.00022 32.1 4.5 21 107-127 98-118 (295)
376 1ltq_A Polynucleotide kinase; 66.4 2.9 9.9E-05 33.7 2.3 16 109-124 4-19 (301)
377 3e70_C DPA, signal recognition 66.4 6.4 0.00022 32.9 4.5 18 107-124 129-146 (328)
378 2zu0_C Probable ATP-dependent 66.4 2.4 8.2E-05 34.3 1.8 19 106-124 45-63 (267)
379 2p5t_B PEZT; postsegregational 66.2 2.1 7.2E-05 34.0 1.4 17 108-124 33-49 (253)
380 3qkt_A DNA double-strand break 65.9 2.9 0.0001 34.8 2.3 15 110-124 26-40 (339)
381 4g1u_C Hemin import ATP-bindin 65.8 3.3 0.00011 33.5 2.5 19 106-124 36-54 (266)
382 1ypw_A Transitional endoplasmi 65.7 2.7 9.1E-05 39.6 2.2 18 107-124 238-255 (806)
383 1htw_A HI0065; nucleotide-bind 65.7 2.9 0.0001 31.0 2.1 20 105-124 31-50 (158)
384 1vht_A Dephospho-COA kinase; s 65.6 3.2 0.00011 31.8 2.3 17 108-124 5-21 (218)
385 1mv5_A LMRA, multidrug resista 65.4 2.8 9.6E-05 33.3 2.0 19 106-124 27-45 (243)
386 2d2e_A SUFC protein; ABC-ATPas 65.1 3.5 0.00012 32.9 2.5 19 106-124 28-46 (250)
387 2yhs_A FTSY, cell division pro 65.1 6.6 0.00023 35.0 4.5 18 109-126 295-312 (503)
388 2zpa_A Uncharacterized protein 65.0 6.4 0.00022 36.4 4.5 60 92-157 175-236 (671)
389 1b0u_A Histidine permease; ABC 65.0 3.5 0.00012 33.2 2.5 19 106-124 31-49 (262)
390 2yz2_A Putative ABC transporte 64.9 3.5 0.00012 33.2 2.5 19 106-124 32-50 (266)
391 1sxj_B Activator 1 37 kDa subu 64.7 3.1 0.0001 33.5 2.2 17 109-125 44-60 (323)
392 2gno_A DNA polymerase III, gam 64.6 25 0.00087 28.7 7.8 72 109-186 20-94 (305)
393 2nq2_C Hypothetical ABC transp 64.5 3.6 0.00012 32.9 2.5 19 106-124 30-48 (253)
394 2qi9_C Vitamin B12 import ATP- 64.4 3.6 0.00012 32.9 2.5 19 106-124 25-43 (249)
395 4akg_A Glutathione S-transfera 64.3 3.2 0.00011 44.3 2.6 21 104-124 1264-1284(2695)
396 1nij_A Hypothetical protein YJ 64.1 7 0.00024 32.2 4.3 15 110-124 7-21 (318)
397 1vpl_A ABC transporter, ATP-bi 64.1 3.7 0.00013 33.0 2.5 19 106-124 40-58 (256)
398 3pxi_A Negative regulator of g 64.0 5.4 0.00018 36.9 3.9 17 109-125 523-539 (758)
399 2ixe_A Antigen peptide transpo 64.0 3.7 0.00013 33.2 2.5 19 106-124 44-62 (271)
400 2ihy_A ABC transporter, ATP-bi 63.4 3.8 0.00013 33.4 2.5 19 106-124 46-64 (279)
401 3zq6_A Putative arsenical pump 63.3 8.6 0.00029 31.7 4.7 33 110-145 17-49 (324)
402 3cf2_A TER ATPase, transitiona 63.3 3.3 0.00011 39.1 2.3 17 108-124 239-255 (806)
403 3lda_A DNA repair protein RAD5 63.3 5.5 0.00019 34.3 3.6 40 108-147 179-221 (400)
404 2dhr_A FTSH; AAA+ protein, hex 63.1 3.4 0.00012 36.7 2.3 16 109-124 66-81 (499)
405 2olj_A Amino acid ABC transpor 63.0 4 0.00014 33.0 2.5 19 106-124 49-67 (263)
406 2jeo_A Uridine-cytidine kinase 62.9 3 0.0001 32.8 1.7 18 107-124 25-42 (245)
407 1ihu_A Arsenical pump-driving 62.9 8.3 0.00028 34.5 4.9 35 108-145 9-43 (589)
408 1c9k_A COBU, adenosylcobinamid 62.5 4.2 0.00014 31.1 2.4 43 110-159 2-44 (180)
409 2rb4_A ATP-dependent RNA helic 62.4 34 0.0012 24.9 7.6 22 139-160 35-56 (175)
410 3p32_A Probable GTPase RV1496/ 62.3 8.4 0.00029 32.2 4.5 22 109-130 81-102 (355)
411 1r6b_X CLPA protein; AAA+, N-t 62.2 5.9 0.0002 36.5 3.8 16 109-124 490-505 (758)
412 1gtv_A TMK, thymidylate kinase 62.1 1.8 6.3E-05 32.8 0.3 15 110-124 3-17 (214)
413 2vp4_A Deoxynucleoside kinase; 61.8 3.6 0.00012 32.0 2.0 18 107-124 20-37 (230)
414 1r6b_X CLPA protein; AAA+, N-t 61.2 3.8 0.00013 37.9 2.3 18 107-124 207-224 (758)
415 2vhj_A Ntpase P4, P4; non- hyd 61.1 5.1 0.00017 33.8 2.9 24 107-130 123-146 (331)
416 2grj_A Dephospho-COA kinase; T 61.1 4.1 0.00014 31.2 2.2 15 110-124 15-29 (192)
417 2ffh_A Protein (FFH); SRP54, s 61.1 8.8 0.0003 33.3 4.5 20 109-128 100-119 (425)
418 2woo_A ATPase GET3; tail-ancho 61.0 8.7 0.0003 31.8 4.4 32 110-144 22-53 (329)
419 3ake_A Cytidylate kinase; CMP 60.9 4.4 0.00015 30.4 2.3 16 109-124 4-19 (208)
420 1odf_A YGR205W, hypothetical 3 60.8 4.2 0.00014 33.3 2.3 16 109-124 33-48 (290)
421 2qen_A Walker-type ATPase; unk 60.6 6.1 0.00021 32.0 3.3 19 106-124 30-48 (350)
422 3sr0_A Adenylate kinase; phosp 60.6 7.2 0.00025 30.2 3.5 16 109-124 2-17 (206)
423 1byi_A Dethiobiotin synthase; 60.6 13 0.00045 28.2 5.1 33 111-146 6-38 (224)
424 3nh6_A ATP-binding cassette SU 60.4 3.2 0.00011 34.4 1.6 19 106-124 79-97 (306)
425 1uj2_A Uridine-cytidine kinase 60.2 4.2 0.00014 32.1 2.2 16 109-124 24-39 (252)
426 3ug7_A Arsenical pump-driving 59.9 11 0.00037 31.5 4.8 33 110-145 29-61 (349)
427 1yrb_A ATP(GTP)binding protein 59.7 9.2 0.00032 29.8 4.1 21 109-129 16-36 (262)
428 2f1r_A Molybdopterin-guanine d 59.7 3 0.0001 31.4 1.2 18 109-126 4-21 (171)
429 2j37_W Signal recognition part 59.7 11 0.00036 33.6 4.9 34 109-145 103-136 (504)
430 3tqc_A Pantothenate kinase; bi 59.5 8.1 0.00028 32.2 3.9 15 110-124 95-109 (321)
431 3u61_B DNA polymerase accessor 59.5 3.8 0.00013 33.4 1.8 16 110-125 51-66 (324)
432 3aez_A Pantothenate kinase; tr 59.3 4.1 0.00014 33.7 2.0 18 107-124 90-107 (312)
433 2bbs_A Cystic fibrosis transme 59.3 4.8 0.00016 33.0 2.4 19 106-124 63-81 (290)
434 2pjz_A Hypothetical protein ST 59.1 4.8 0.00016 32.5 2.3 18 107-124 30-47 (263)
435 2onk_A Molybdate/tungstate ABC 59.0 4.8 0.00017 31.9 2.3 17 108-124 25-41 (240)
436 1qvr_A CLPB protein; coiled co 59.0 4.8 0.00016 37.9 2.7 16 109-124 590-605 (854)
437 3vkg_A Dynein heavy chain, cyt 59.0 4.6 0.00016 43.8 2.7 20 104-123 1301-1320(3245)
438 1q3t_A Cytidylate kinase; nucl 58.9 5.5 0.00019 31.0 2.6 19 106-124 15-33 (236)
439 3umf_A Adenylate kinase; rossm 58.7 8.1 0.00028 30.3 3.6 17 108-124 30-46 (217)
440 4eaq_A DTMP kinase, thymidylat 58.5 4.2 0.00014 31.9 1.9 19 106-124 25-43 (229)
441 1svm_A Large T antigen; AAA+ f 58.5 5.2 0.00018 34.2 2.5 19 106-124 168-186 (377)
442 2f6r_A COA synthase, bifunctio 58.1 4.5 0.00015 32.7 2.0 16 109-124 77-92 (281)
443 1pzn_A RAD51, DNA repair and r 58.0 5.4 0.00018 33.5 2.6 29 100-128 119-152 (349)
444 3zvl_A Bifunctional polynucleo 57.2 5.1 0.00017 34.4 2.3 17 109-125 260-276 (416)
445 1pui_A ENGB, probable GTP-bind 57.2 4.6 0.00016 30.2 1.9 19 106-124 25-43 (210)
446 2hjv_A ATP-dependent RNA helic 57.0 33 0.0011 24.7 6.6 22 140-161 37-58 (163)
447 2h92_A Cytidylate kinase; ross 56.5 6.3 0.00022 29.9 2.6 18 107-124 3-20 (219)
448 3ice_A Transcription terminati 55.9 16 0.00055 31.7 5.2 39 95-134 159-200 (422)
449 1sq5_A Pantothenate kinase; P- 55.6 5 0.00017 32.9 1.9 17 108-124 81-97 (308)
450 1e69_A Chromosome segregation 55.4 4.8 0.00017 33.1 1.8 16 109-124 26-41 (322)
451 3r20_A Cytidylate kinase; stru 54.8 6.3 0.00022 31.3 2.3 19 107-125 9-27 (233)
452 4edh_A DTMP kinase, thymidylat 54.8 13 0.00046 28.7 4.2 21 106-126 5-25 (213)
453 1hyq_A MIND, cell division inh 54.6 17 0.00058 28.3 4.9 31 111-144 7-37 (263)
454 2ged_A SR-beta, signal recogni 54.4 6.7 0.00023 28.8 2.3 17 108-124 49-65 (193)
455 1g3q_A MIND ATPase, cell divis 54.3 15 0.00052 28.0 4.5 31 111-144 7-37 (237)
456 3sop_A Neuronal-specific septi 54.3 5.7 0.00019 32.1 2.0 16 109-124 4-19 (270)
457 1w5s_A Origin recognition comp 54.1 7.1 0.00024 32.5 2.7 18 108-125 51-70 (412)
458 3tqf_A HPR(Ser) kinase; transf 54.1 7.6 0.00026 29.9 2.6 23 106-128 15-37 (181)
459 3cf2_A TER ATPase, transitiona 54.0 5.5 0.00019 37.6 2.1 17 108-124 512-528 (806)
460 2dyk_A GTP-binding protein; GT 53.9 7.1 0.00024 27.5 2.3 16 109-124 3-18 (161)
461 1fuk_A Eukaryotic initiation f 53.9 52 0.0018 23.6 7.3 22 140-161 32-53 (165)
462 3gd7_A Fusion complex of cysti 53.6 5.1 0.00017 34.4 1.7 19 106-124 46-64 (390)
463 1z47_A CYSA, putative ABC-tran 53.4 7 0.00024 33.1 2.5 19 106-124 40-58 (355)
464 2f9l_A RAB11B, member RAS onco 53.4 7.1 0.00024 29.1 2.3 16 109-124 7-22 (199)
465 3v9p_A DTMP kinase, thymidylat 53.3 5.1 0.00017 31.7 1.5 23 104-126 22-44 (227)
466 4dzz_A Plasmid partitioning pr 53.2 13 0.00046 27.5 3.9 29 113-144 8-36 (206)
467 3q9l_A Septum site-determining 53.1 16 0.00055 28.2 4.5 31 111-144 7-37 (260)
468 3fvq_A Fe(3+) IONS import ATP- 53.0 6.8 0.00023 33.3 2.4 19 106-124 29-47 (359)
469 2ph1_A Nucleotide-binding prot 53.0 16 0.00056 28.7 4.6 31 111-144 23-53 (262)
470 1nrj_B SR-beta, signal recogni 52.9 7.2 0.00025 29.4 2.3 18 108-125 13-30 (218)
471 2npi_A Protein CLP1; CLP1-PCF1 52.8 7.6 0.00026 34.0 2.7 20 105-124 136-155 (460)
472 2yyz_A Sugar ABC transporter, 52.7 7.3 0.00025 33.0 2.5 19 106-124 28-46 (359)
473 2eyq_A TRCF, transcription-rep 52.7 7.1 0.00024 38.3 2.7 51 105-162 15-66 (1151)
474 4tmk_A Protein (thymidylate ki 52.6 14 0.00049 28.6 4.1 21 106-126 2-22 (213)
475 3iqw_A Tail-anchored protein t 52.5 12 0.00042 31.2 3.9 34 109-145 18-51 (334)
476 2fna_A Conserved hypothetical 52.5 12 0.0004 30.2 3.7 18 108-125 31-48 (357)
477 1z2a_A RAS-related protein RAB 52.3 7.8 0.00027 27.4 2.3 16 109-124 7-22 (168)
478 2it1_A 362AA long hypothetical 52.2 7.5 0.00026 33.0 2.5 19 106-124 28-46 (362)
479 2ce2_X GTPase HRAS; signaling 52.0 7.5 0.00026 27.2 2.2 16 109-124 5-20 (166)
480 3tmk_A Thymidylate kinase; pho 51.9 7.3 0.00025 30.5 2.2 20 106-125 4-23 (216)
481 1qvr_A CLPB protein; coiled co 51.7 6.2 0.00021 37.1 2.1 24 108-132 192-215 (854)
482 2ocp_A DGK, deoxyguanosine kin 51.6 6.1 0.00021 30.8 1.7 18 107-124 2-19 (241)
483 1g29_1 MALK, maltose transport 51.4 7.9 0.00027 33.0 2.5 19 106-124 28-46 (372)
484 1ky3_A GTP-binding protein YPT 51.3 8.1 0.00028 27.7 2.3 16 109-124 10-25 (182)
485 1p5z_B DCK, deoxycytidine kina 51.3 6.4 0.00022 31.1 1.9 19 106-124 23-41 (263)
486 2o5v_A DNA replication and rep 51.3 7.4 0.00025 33.0 2.3 16 109-124 28-43 (359)
487 1oix_A RAS-related protein RAB 51.3 7.6 0.00026 28.9 2.2 16 109-124 31-46 (191)
488 3b5x_A Lipid A export ATP-bind 50.9 6.4 0.00022 35.3 2.0 20 105-124 367-386 (582)
489 4a82_A Cystic fibrosis transme 50.9 7.8 0.00027 34.8 2.5 19 106-124 366-384 (578)
490 1z0j_A RAB-22, RAS-related pro 50.9 8.4 0.00029 27.3 2.3 16 109-124 8-23 (170)
491 3end_A Light-independent proto 50.5 18 0.00062 29.0 4.6 34 108-144 42-75 (307)
492 2woj_A ATPase GET3; tail-ancho 50.4 15 0.00052 30.8 4.1 33 110-145 21-55 (354)
493 1v43_A Sugar-binding transport 50.4 8.3 0.00029 32.8 2.5 19 106-124 36-54 (372)
494 1t5i_A C_terminal domain of A 50.3 63 0.0022 23.5 7.3 22 140-161 33-54 (172)
495 3rlf_A Maltose/maltodextrin im 50.3 8.4 0.00029 33.0 2.5 19 106-124 28-46 (381)
496 1ypw_A Transitional endoplasmi 50.2 4.6 0.00016 38.0 0.9 18 107-124 511-528 (806)
497 1ek0_A Protein (GTP-binding pr 50.2 8.8 0.0003 27.1 2.3 16 109-124 5-20 (170)
498 2afh_E Nitrogenase iron protei 50.1 20 0.00068 28.5 4.7 32 110-144 5-36 (289)
499 3kjh_A CO dehydrogenase/acetyl 49.9 11 0.00037 28.9 3.0 32 110-144 3-34 (254)
500 1svi_A GTP-binding protein YSX 49.8 8.3 0.00028 28.3 2.2 17 108-124 24-40 (195)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=176.86 Aligned_cols=124 Identities=23% Similarity=0.388 Sum_probs=107.3
Q ss_pred HHhccCCChhcHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHHHHhc
Q 028848 58 LAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQ 135 (202)
Q Consensus 58 l~~~~~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~l~~~ 135 (202)
...+.+.+...+..|.+++|++.+++.+.++||..||++|+++||.++.| +|++++++||||||++|++|+++.+...
T Consensus 80 ~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~ 159 (300)
T 3fmo_B 80 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA 159 (300)
T ss_dssp ECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred ccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc
Confidence 33445556566777888899999999999999999999999999999998 9999999999999999999999998777
Q ss_pred CCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHH
Q 028848 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRR 188 (202)
Q Consensus 136 ~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~ 188 (202)
..++++|||+||++|+.|++++++.++.+.. ++++..++||.....
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~ 205 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYP-------ELKLAYAVRGNKLER 205 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTST-------TCCEEEESTTCCCCT
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCC-------CcEEEEEeCCccHhh
Confidence 7778999999999999999999999988652 467777777776533
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=1.5e-22 Score=165.38 Aligned_cols=124 Identities=28% Similarity=0.364 Sum_probs=110.7
Q ss_pred cHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhc-----CCCcEEE
Q 028848 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ-----RSAVQAV 142 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~-----~~~~~~l 142 (202)
.+..|.+.++++.+.+.+.+.||..|+++|+++++.++.|+|++++++||||||++|++|++..+... ..++++|
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 34555666999999999999999999999999999999999999999999999999999999988743 2456899
Q ss_pred EEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 143 IVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 143 il~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
|++||++|+.|+.+.+++++... ++++..++||....++...+.++++|
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~I 155 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRAC--------RLKSTCIYGGAPKGPQIRDLERGVEI 155 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHCCSE
T ss_pred EEeCcHHHHHHHHHHHHHHHhhc--------CceEEEEECCCChHHHHHHhcCCCCE
Confidence 99999999999999999998876 57888899999999998888888876
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.88 E-value=2e-22 Score=178.06 Aligned_cols=124 Identities=31% Similarity=0.473 Sum_probs=111.4
Q ss_pred cHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC-----CCcEEE
Q 028848 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-----SAVQAV 142 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~-----~~~~~l 142 (202)
.+..|.+.++++.+++++.+.||..|||+|+++||.+++|+|++++++||||||++|++|+++.+.... .++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 355667779999999999999999999999999999999999999999999999999999999886543 367999
Q ss_pred EEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 143 IVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 143 il~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
|++||++|+.|+++++++++... ++++..++||....++...+..+++|
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~--------~~~~~~~~gg~~~~~~~~~l~~~~~I 182 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFES--------YLKIGIVYGGTSFRHQNECITRGCHV 182 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS--------SCCCCEECTTSCHHHHHHHHTTCCSE
T ss_pred EEecCHHHHHHHHHHHHHHhccC--------CcEEEEEECCCCHHHHHHHhhcCCCE
Confidence 99999999999999999998765 57788899999999998888888776
No 4
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.88 E-value=4.6e-22 Score=163.84 Aligned_cols=123 Identities=26% Similarity=0.323 Sum_probs=110.6
Q ss_pred HHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 69 ~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
...|.+.++++.+.+.+.+.||..|+++|+++++.+++|+|++++++||||||++|++|+++.+.....+.++||++|++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 44567779999999999999999999999999999999999999999999999999999999888777677899999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 149 ELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 149 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+|+.|+.+.+++++... ++++..++||....++...+..+++|
T Consensus 122 ~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~I 164 (249)
T 3ber_A 122 ELAFQISEQFEALGSSI--------GVQSAVIVGGIDSMSQSLALAKKPHI 164 (249)
T ss_dssp HHHHHHHHHHHHHHGGG--------TCCEEEECTTSCHHHHHHHHHTCCSE
T ss_pred HHHHHHHHHHHHHhccC--------CeeEEEEECCCChHHHHHHhcCCCCE
Confidence 99999999999998765 46788888888888887787777776
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=9.8e-22 Score=155.97 Aligned_cols=122 Identities=29% Similarity=0.466 Sum_probs=107.4
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|++.++++.+++.+.+.||..|+++|+++++.+++|+|+++++|||||||++|++|+++.+.....++++||++|+++|
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 36667999999999999999999999999999999999999999999999999999999987666666799999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+.|+.+.++++....+ ++++..++||....++...+..+++|
T Consensus 84 ~~q~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~i 125 (206)
T 1vec_A 84 ALQVSQICIQVSKHMG-------GAKVMATTGGTNLRDDIMRLDDTVHV 125 (206)
T ss_dssp HHHHHHHHHHHTTTSS-------SCCEEEECSSSCHHHHHHHTTSCCSE
T ss_pred HHHHHHHHHHHHhhcC-------CceEEEEeCCccHHHHHHhcCCCCCE
Confidence 9999999999987652 46778888888888777776666665
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=157.66 Aligned_cols=127 Identities=24% Similarity=0.352 Sum_probs=102.5
Q ss_pred cCCChhcHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhc------
Q 028848 62 TGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ------ 135 (202)
Q Consensus 62 ~~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~------ 135 (202)
.|.+...|.++ .++++.+++++.+.||..|+++|+++++.+++|+|++++++||||||++|++|++..+...
T Consensus 14 ~p~p~~~f~~~--~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~ 91 (228)
T 3iuy_A 14 IPKPTCRFKDA--FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 91 (228)
T ss_dssp CCCCCCSHHHH--HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred CCCChhhHhhh--hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhc
Confidence 34555556552 3899999999999999999999999999999999999999999999999999999877532
Q ss_pred CCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 136 RSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 136 ~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
..++++||++||++|+.|+.++++++... ++++..++||....++...+.++++|
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i 146 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYSYK---------GLKSICIYGGRNRNGQIEDISKGVDI 146 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHCCT---------TCCEEEECC------CHHHHHSCCSE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhccc---------CceEEEEECCCChHHHHHHhcCCCCE
Confidence 24568999999999999999999998632 57788889999988888888887776
No 7
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.86 E-value=1.6e-21 Score=159.07 Aligned_cols=122 Identities=28% Similarity=0.372 Sum_probs=97.2
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
..|.++++++.+++.+.+.||..|+++|+++++.++.|+|++++++||||||++|++|+++.+.....+.++||++|+++
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 109 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRE 109 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHH
Confidence 44666699999999999999999999999999999999999999999999999999999998865555669999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhc-CCC
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVL-YSL 199 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~-~~i 199 (202)
|+.|+.+++++++... ++.+..++||....++...+..+ ++|
T Consensus 110 L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~l~~~~~~I 152 (237)
T 3bor_A 110 LAQQIQKVILALGDYM--------GATCHACIGGTNVRNEMQKLQAEAPHI 152 (237)
T ss_dssp HHHHHHHHHHHHTTTT--------TCCEEEECC-------------CCCSE
T ss_pred HHHHHHHHHHHHhhhc--------CceEEEEECCCchHHHHHHHhcCCCCE
Confidence 9999999999998765 46777888888887777777765 665
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.86 E-value=6e-21 Score=154.76 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=102.5
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|.+.++++.+.+.+.+.||..|+++|+++++.+++|+|++++++||||||++|++|+++.+.....+.++||++|+++|
T Consensus 25 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 104 (230)
T 2oxc_A 25 DFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREI 104 (230)
T ss_dssp CGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHH
Confidence 34555999999999999999999999999999999999999999999999999999999887655556799999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+.|+.++++++..... ++++..++||....++...++ +++|
T Consensus 105 ~~q~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~-~~~I 145 (230)
T 2oxc_A 105 AVQIHSVITAIGIKME-------GLECHVFIGGTPLSQDKTRLK-KCHI 145 (230)
T ss_dssp HHHHHHHHHHHTTTST-------TCCEEEECTTSCHHHHHHHTT-SCSE
T ss_pred HHHHHHHHHHHhcccC-------CceEEEEeCCCCHHHHHHhcc-CCCE
Confidence 9999999999986542 467777778777766655443 4444
No 9
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.86 E-value=1.2e-21 Score=160.77 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=107.7
Q ss_pred HHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC---------CCc
Q 028848 69 LRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---------SAV 139 (202)
Q Consensus 69 ~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~---------~~~ 139 (202)
...|.+.++++.+.+++.+.||..|+++|.++++.+++|+|++++++||||||++|++|+++.+.... .++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 34456669999999999999999999999999999999999999999999999999999999876432 246
Q ss_pred EEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 140 QAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 140 ~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++||++||++|+.|+.+++++++... ++++..++||....++...+..+++|
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~I 153 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT--------PLRSCVVYGGADTHSQIREVQMGCHL 153 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS--------SCCEEEECSSSCSHHHHHHHSSCCSE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC--------CceEEEEECCCCHHHHHHHhCCCCCE
Confidence 89999999999999999999998765 57788888999888888888777776
No 10
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=8e-21 Score=152.47 Aligned_cols=122 Identities=20% Similarity=0.348 Sum_probs=106.8
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|.+.++++.+.+.+.+.||..|+++|+++++.+++|+|++++++||+|||++|++|++..+.....+.++||++|+++|
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 94 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHH
Confidence 46667999999999999999999999999999999999999999999999999999999887665556689999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhc-CCC
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVL-YSL 199 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~-~~i 199 (202)
+.|+.+.++++....+ ++++..++||....++.+.+.++ ++|
T Consensus 95 ~~q~~~~~~~~~~~~~-------~~~v~~~~g~~~~~~~~~~~~~~~~~i 137 (220)
T 1t6n_A 95 AFQISKEYERFSKYMP-------NVKVAVFFGGLSIKKDEEVLKKNCPHI 137 (220)
T ss_dssp HHHHHHHHHHHTTTST-------TCCEEEESCCSCHHHHHHHHHHSCCSE
T ss_pred HHHHHHHHHHHHhhCC-------CceEEEEeCCCChHHHHHHHhcCCCCE
Confidence 9999999999987642 46778888888887777777764 565
No 11
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.85 E-value=1.6e-21 Score=156.76 Aligned_cols=125 Identities=25% Similarity=0.355 Sum_probs=105.2
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|.+.++++.+.+.+.+.||..|+++|+++++.+++|+|++++++||||||++|++|+++.+.....+.++||++||++|
T Consensus 5 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 84 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 84 (219)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHH
Confidence 35666999999999999999999999999999999999999999999999999999999988766566799999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+.|+.+.++++....+. ..++++..++||....++.+.+..+++|
T Consensus 85 ~~q~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~I 129 (219)
T 1q0u_A 85 ATQIYHETLKITKFCPK----DRMIVARCLIGGTDKQKALEKLNVQPHI 129 (219)
T ss_dssp HHHHHHHHHHHHTTSCG----GGCCCEEEECCCSHHHHTTCCCSSCCSE
T ss_pred HHHHHHHHHHHhhhccc----ccceEEEEEeCCCCHHHHHHHcCCCCCE
Confidence 99999999999876521 1246777778887766665555445554
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=164.39 Aligned_cols=122 Identities=27% Similarity=0.404 Sum_probs=107.3
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC-------------
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR------------- 136 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~------------- 136 (202)
..|.+.++++.+.+++...||..|+++|+++++.++.|+|++++++||||||++|++|+++.+....
T Consensus 15 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 3456669999999999999999999999999999999999999999999999999999998775432
Q ss_pred -----CCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 137 -----SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 137 -----~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
.++++||++||++|+.|+.+++++++... ++++..++||....++...+..+++|
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~I 154 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--------RVRPCVVYGGADIGQQIRDLERGCHL 154 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS--------SCCEEEECSSSCHHHHHHHHTTCCSE
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCcC--------CceEEEEECCCCHHHHHHHhhCCCCE
Confidence 23579999999999999999999998765 57888888998888888888777766
No 13
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=157.38 Aligned_cols=115 Identities=30% Similarity=0.412 Sum_probs=103.5
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC----CCcEEEEEcCCHhhHH
Q 028848 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR----SAVQAVIVVPTRELGM 152 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~----~~~~~lil~Pt~~La~ 152 (202)
+.+.+++.+.+.||..|+++|.++++.++.|+|++++++||||||++|++|+++.+...+ .+.++||++||++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999999887532 3458999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 153 QVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 153 Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
|+.+.+++++... ++.+..++||.....+...+..+++|
T Consensus 141 q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~I 179 (262)
T 3ly5_A 141 QTFGVLKELMTHH--------VHTYGLIMGGSNRSAEAQKLGNGINI 179 (262)
T ss_dssp HHHHHHHHHTTTC--------CSCEEEECSSSCHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHhhc--------CceEEEEECCCCHHHHHHHhcCCCCE
Confidence 9999999998875 46778888988888888888877776
No 14
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=152.27 Aligned_cols=124 Identities=23% Similarity=0.389 Sum_probs=103.1
Q ss_pred hcHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhc----CCCcEEE
Q 028848 67 LTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----RSAVQAV 142 (202)
Q Consensus 67 ~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~----~~~~~~l 142 (202)
.....|.+.++++.+.+.+.+.||..|+++|+++++.+++|+|++++++||||||++|++|+++.+... ..+.++|
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 345567777999999999999999999999999999999999999999999999999999999887642 2345899
Q ss_pred EEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 143 IVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 143 il~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
|++|+++|+.|+.+.+++++... ++++..++||....++...+. +++|
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~-~~~i 149 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNH--------DFSAGLIIGGKDLKHEAERIN-NINI 149 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS--------SCCEEEECCC--CHHHHHHHT-TCSE
T ss_pred EEeCCHHHHHHHHHHHHHHhCCC--------CeeEEEEECCCCHHHHHHhCC-CCCE
Confidence 99999999999999999998765 467777788877766665552 3443
No 15
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.84 E-value=5.7e-21 Score=153.57 Aligned_cols=117 Identities=28% Similarity=0.398 Sum_probs=95.4
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
..|.+.++++.+++.+.+.||..|+++|+++++.+++|+|++++++||||||++|++|+++.+.....+.++||++|+++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 93 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHH
Confidence 34555599999999999999999999999999999999999999999999999999999998876666679999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHh
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 194 (202)
|+.|+.+.+++++... ++++..++||....++...+.
T Consensus 94 L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~ 130 (224)
T 1qde_A 94 LALQIQKVVMALAFHM--------DIKVHACIGGTSFVEDAEGLR 130 (224)
T ss_dssp HHHHHHHHHHHHTTTS--------CCCEEEECC----------CT
T ss_pred HHHHHHHHHHHHhccc--------CceEEEEeCCcchHHHHhcCC
Confidence 9999999999998765 467777777777666554443
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.84 E-value=3.1e-20 Score=147.20 Aligned_cols=118 Identities=29% Similarity=0.380 Sum_probs=103.4
Q ss_pred HhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhc---CCCcEEEEEcCCH
Q 028848 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ---RSAVQAVIVVPTR 148 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~---~~~~~~lil~Pt~ 148 (202)
|.+.++++.+.+.+.+.|+..|+++|+++++.+++|+|++++++||||||++|++++++.+... ..++++||++|++
T Consensus 3 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~ 82 (207)
T 2gxq_A 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTR 82 (207)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCH
Confidence 5667999999999999999999999999999999999999999999999999999999887532 2456899999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 149 ELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 149 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+|+.|+.+.++++... +++..++||....++.+.+..+++|
T Consensus 83 ~L~~q~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i 123 (207)
T 2gxq_A 83 ELALQVASELTAVAPH----------LKVVAVYGGTGYGKQKEALLRGADA 123 (207)
T ss_dssp HHHHHHHHHHHHHCTT----------SCEEEECSSSCSHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHhhc----------ceEEEEECCCChHHHHHHhhCCCCE
Confidence 9999999999988754 4567788888888887777777765
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.83 E-value=2.9e-20 Score=161.41 Aligned_cols=121 Identities=26% Similarity=0.357 Sum_probs=108.5
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|.++++++.+.+++.+.||..|+++|+++++.++.|+|++++++||||||++|++|+++.+.....+.++||++|+++|
T Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L 117 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTREL 117 (410)
T ss_dssp SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHH
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHH
Confidence 45556999999999999999999999999999999999999999999999999999999887655556699999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+.|+.+.+++++... ++.+..++||....++...+..+++|
T Consensus 118 ~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~i 158 (410)
T 2j0s_A 118 AVQIQKGLLALGDYM--------NVQCHACIGGTNVGEDIRKLDYGQHV 158 (410)
T ss_dssp HHHHHHHHHHHTTTT--------TCCEEEECTTSCHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHhccC--------CeEEEEEECCCCHHHHHHHhhcCCCE
Confidence 999999999998776 57788888999988888888877766
No 18
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=153.69 Aligned_cols=105 Identities=28% Similarity=0.476 Sum_probs=92.4
Q ss_pred ccCCChhcHHhHh-cCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhc-CCC
Q 028848 61 GTGNNSLTLRELC-QGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ-RSA 138 (202)
Q Consensus 61 ~~~~~~~~~~~l~-~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~-~~~ 138 (202)
..+.+..+|.++. +.++++.+++.+.+.||..|+++|+++++.+++|+|+++.++||||||++|++|++..+... ..+
T Consensus 19 ~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 98 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKG 98 (245)
T ss_dssp SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSS
T ss_pred CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCC
Confidence 4456666777663 34899999999999999999999999999999999999999999999999999999988642 245
Q ss_pred cEEEEEcCCHhhHHHHHHHHHHHhcCC
Q 028848 139 VQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 139 ~~~lil~Pt~~La~Q~~~~~~~l~~~~ 165 (202)
+++||++||++|+.|+.+++++++...
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999998765
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.81 E-value=2.4e-19 Score=154.10 Aligned_cols=123 Identities=20% Similarity=0.345 Sum_probs=107.1
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
..|.+.++++.+.+.+.+.||..|+++|.++++.++.|+++++.++||+|||++|++|++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 34566699999999999999999999999999999999999999999999999999999988765555668999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhc-CCC
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVL-YSL 199 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~-~~i 199 (202)
|+.|+.+.++++....+ ++++..++||....++...+..+ ++|
T Consensus 88 L~~q~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~i 131 (391)
T 1xti_A 88 LAFQISKEYERFSKYMP-------NVKVAVFFGGLSIKKDEEVLKKNCPHI 131 (391)
T ss_dssp HHHHHHHHHHHHTTTCT-------TCCEEEECTTSCHHHHHHHHHHSCCSE
T ss_pred HHHHHHHHHHHHHhhCC-------CeEEEEEeCCCCHHHHHHHHhcCCCCE
Confidence 99999999999987652 57788888888888877777765 555
No 20
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.80 E-value=2.2e-19 Score=155.20 Aligned_cols=126 Identities=23% Similarity=0.382 Sum_probs=106.8
Q ss_pred CHHHHHhccCCChhcHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHH
Q 028848 54 SIEELAAGTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSL 131 (202)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~ 131 (202)
.++.+....+.+......|.+.++++.+++.+.+.||..|+++|.++++.++.+ +++++++|||+|||++|++|+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~ 88 (412)
T 3fht_A 9 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 88 (412)
T ss_dssp HHHHHTTCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeecccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHH
Confidence 344455555566667778888899999999999999999999999999999987 899999999999999999999998
Q ss_pred HHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCch
Q 028848 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGML 186 (202)
Q Consensus 132 l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~ 186 (202)
+..+..+.++||++|+++|+.|+.+.++++....+ ++.+....++...
T Consensus 89 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 136 (412)
T 3fht_A 89 VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP-------ELKLAYAVRGNKL 136 (412)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST-------TCCEEEECTTCCC
T ss_pred hhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc-------cceEEEeecCcch
Confidence 87776677999999999999999999999987652 4556666666554
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.80 E-value=5.9e-20 Score=163.41 Aligned_cols=119 Identities=23% Similarity=0.381 Sum_probs=101.7
Q ss_pred ccCCChhcHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCC
Q 028848 61 GTGNNSLTLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138 (202)
Q Consensus 61 ~~~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~ 138 (202)
..+.+...+..|.+.+|++.+++.+.++||..|+++|+++++.++.+ ++++++++||||||++|++|+++.+..++.+
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~ 162 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 162 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCS
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCC
Confidence 34445455667788899999999999999999999999999999987 8999999999999999999999988777777
Q ss_pred cEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCch
Q 028848 139 VQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGML 186 (202)
Q Consensus 139 ~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~ 186 (202)
+++|||+||++|+.|+.++++++..... .+.+...+++...
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 203 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYP-------ELKLAYAVRGNKL 203 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTST-------TCCEEEESTTCCC
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCC-------CceEEEEeCCccc
Confidence 7999999999999999999999988653 3555555555543
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.80 E-value=4.6e-19 Score=153.15 Aligned_cols=121 Identities=30% Similarity=0.443 Sum_probs=104.7
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|.+.++++.+.+.+.+.||..|+++|+++++.++.|+++++.++||+|||++|++|++..+.....+.++||++|+++|
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 101 (400)
T 1s2m_A 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL 101 (400)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHH
Confidence 45556999999999999999999999999999999999999999999999999999999887655556689999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
+.|+.+++++++... ++++..++||....++...+...++|
T Consensus 102 ~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~I 142 (400)
T 1s2m_A 102 ALQTSQVVRTLGKHC--------GISCMVTTGGTNLRDDILRLNETVHI 142 (400)
T ss_dssp HHHHHHHHHHHTTTT--------TCCEEEECSSSCHHHHHHHTTSCCSE
T ss_pred HHHHHHHHHHHhccc--------CceEEEEeCCcchHHHHHHhcCCCCE
Confidence 999999999998765 46777788888777766655555554
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=7.5e-19 Score=160.26 Aligned_cols=134 Identities=22% Similarity=0.371 Sum_probs=112.5
Q ss_pred cCCChhcHHhHhcCC-CCHHHHHHHHhCCCCCCCHHHHHHHHHHH--cCCCEEEEccCCCchHHHHHHHHHHHHHhcC--
Q 028848 62 TGNNSLTLRELCQGH-VPEHVLRRMDETGYVLPTDIQREALPVLF--SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-- 136 (202)
Q Consensus 62 ~~~~~~~~~~l~~~g-l~~~l~~~l~~~g~~~~t~~Q~~~i~~il--~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~-- 136 (202)
.+....++.+|.+.+ |++.+++++.+.||..|+|+|.++++.++ .|+|+++++|||+|||++|++|+++.+...+
T Consensus 12 ~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~ 91 (579)
T 3sqw_A 12 DNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD 91 (579)
T ss_dssp SSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc
Confidence 344566788887666 89999999999999999999999999999 7789999999999999999999999887653
Q ss_pred --CCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhh-cCCC
Q 028848 137 --SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV-LYSL 199 (202)
Q Consensus 137 --~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~i 199 (202)
.++++||++||++|+.|+.++++++.... .....+.+..++||.....+...+.. +++|
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~----~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~I 153 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMN----YGLKKYACVSLVGGTDFRAAMNKMNKLRPNI 153 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHC----GGGTTSCEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhc----ccccceEEEEEECCccHHHHHHHHhcCCCCE
Confidence 34689999999999999999999987532 11235678889999998888888865 5766
No 24
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.79 E-value=1e-18 Score=158.17 Aligned_cols=133 Identities=23% Similarity=0.374 Sum_probs=111.1
Q ss_pred CCChhcHHhHhcCC-CCHHHHHHHHhCCCCCCCHHHHHHHHHHH--cCCCEEEEccCCCchHHHHHHHHHHHHHhcC---
Q 028848 63 GNNSLTLRELCQGH-VPEHVLRRMDETGYVLPTDIQREALPVLF--SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR--- 136 (202)
Q Consensus 63 ~~~~~~~~~l~~~g-l~~~l~~~l~~~g~~~~t~~Q~~~i~~il--~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~--- 136 (202)
+....++.+|.+.+ +++.+++.+.+.||..|+|+|.++++.++ .++|+++++|||||||++|++|+++.+...+
T Consensus 64 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~ 143 (563)
T 3i5x_A 64 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 143 (563)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred cCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc
Confidence 34456788887666 99999999999999999999999999999 6789999999999999999999999887654
Q ss_pred -CCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhh-cCCC
Q 028848 137 -SAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKV-LYSL 199 (202)
Q Consensus 137 -~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~i 199 (202)
.++++||++||++|+.|+.++++++.... .....+.+..++||.....+...+.. +++|
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I 204 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMN----YGLKKYACVSLVGGTDFRAAMNKMNKLRPNI 204 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHC----GGGTTSCEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhc----cccCceeEEEEECCcCHHHHHHHHhcCCCCE
Confidence 24589999999999999999999986532 11235678888999998888877754 5666
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=152.00 Aligned_cols=122 Identities=28% Similarity=0.380 Sum_probs=107.4
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
..|.+.++++.+.+.+.+.||..|+++|+++++.++.|+|+++.++||||||++|++++++.+.....+.++||++|+++
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHH
Confidence 45566699999999999999999999999999999999999999999999999999999998876555668999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHh-hcCCC
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK-VLYSL 199 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~i 199 (202)
|+.|+.+++++++... ++.+..++||.....+...+. ..++|
T Consensus 120 L~~q~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYM--------GASCHACIGGTNVRAEVQKLQMEAPHI 162 (414)
T ss_dssp HHHHHHHHHHHHGGGS--------CCCEEECCCCTTHHHHHHHHTTTCCSE
T ss_pred HHHHHHHHHHHHhccc--------CceEEEEECCcchHHHHHHHhcCCCCE
Confidence 9999999999998776 467788888888888777776 34555
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.78 E-value=9e-19 Score=150.48 Aligned_cols=116 Identities=28% Similarity=0.406 Sum_probs=102.1
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.|.+.++++.+.+.+.+.||..|+++|+++++.++.|+++++.++||+|||++|++|+++.+.....+.++||++|+++|
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L 101 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTREL 101 (394)
T ss_dssp SSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHH
Confidence 35555999999999999999999999999999999999999999999999999999999988766566799999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHh
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 194 (202)
+.|+.+.++++.... ++++..++||....++...+.
T Consensus 102 ~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~ 137 (394)
T 1fuu_A 102 ALQIQKVVMALAFHM--------DIKVHACIGGTSFVEDAEGLR 137 (394)
T ss_dssp HHHHHHHHHHHTTTS--------CCCEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--------CeeEEEEeCCCchHHHHhhcC
Confidence 999999999998765 467788888887766665554
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.75 E-value=5.5e-18 Score=145.20 Aligned_cols=96 Identities=27% Similarity=0.469 Sum_probs=88.2
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
..|.+.|+++.+++.+.+.||..|+++|+++++.++.+ +++++++|||+|||++|+++++..+.....+.++||++|+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 45667799999999999999999999999999999998 8999999999999999999999988765566699999999
Q ss_pred HhhHHHHHHHHHHHhcCC
Q 028848 148 RELGMQVTKVARVLAAKP 165 (202)
Q Consensus 148 ~~La~Q~~~~~~~l~~~~ 165 (202)
++|+.|+.+.+++++...
T Consensus 85 ~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFT 102 (395)
T ss_dssp HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999998765
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.75 E-value=1.1e-17 Score=141.97 Aligned_cols=115 Identities=27% Similarity=0.505 Sum_probs=99.9
Q ss_pred hHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 71 ELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS-RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g-~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
.|.+.++++.+.+.+.+.||..|+++|+++++.++++ +++++.++||+|||++|+.+++..+... .+.++||++|+++
T Consensus 7 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHH
Confidence 4666699999999999999999999999999999988 6999999999999999999998876543 3458999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHh
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 194 (202)
|+.|+.+.++++.... ++++..++||....++...+.
T Consensus 86 L~~q~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~ 122 (367)
T 1hv8_A 86 LAIQVADEIESLKGNK--------NLKIAKIYGGKAIYPQIKALK 122 (367)
T ss_dssp HHHHHHHHHHHHHCSS--------CCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--------CceEEEEECCcchHHHHhhcC
Confidence 9999999999998765 567888888888777666654
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=6.1e-17 Score=136.03 Aligned_cols=104 Identities=26% Similarity=0.451 Sum_probs=91.0
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHH
Q 028848 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 156 (202)
|++.+.+.+.+.||..|+++|+++++.+++|+++++.+|||+|||++|+.++++. +. ++||++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~---~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GM---KSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TC---CEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cC---CEEEEeCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999998763 33 89999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHHHHh
Q 028848 157 VARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 194 (202)
.+++++... ++++..++||....++...+.
T Consensus 75 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 2z0m_A 75 HIRDIGRYM--------DTKVAEVYGGMPYKAQINRVR 104 (337)
T ss_dssp HHHHHTTTS--------CCCEEEECTTSCHHHHHHHHT
T ss_pred HHHHHhhhc--------CCcEEEEECCcchHHHHhhcC
Confidence 999998765 467777788877776655554
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.70 E-value=5.4e-17 Score=141.53 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=88.0
Q ss_pred HHHHHh-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHH
Q 028848 82 LRRMDE-TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 82 ~~~l~~-~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 160 (202)
.+.+++ .|| .|+|+|+++++.+++|+|+++++|||||||++|+++++.....+. ++||++||++|+.|+.++++.
T Consensus 11 ~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~---~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 11 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGK---KSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTC---CEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHHHHH
Confidence 344444 366 699999999999999999999999999999999999988774444 999999999999999999999
Q ss_pred HhcCCCCCCCCCCCceEEEEecCCch---HHhHHHHhhc-CCC
Q 028848 161 LAAKPSDTDLEHKPCTVMALLDGGML---RRHKSWLKVL-YSL 199 (202)
Q Consensus 161 l~~~~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~i 199 (202)
++. . ++++..++||.+. .++...+..+ ++|
T Consensus 87 ~~~-~--------~~~v~~~~g~~~~~~~~~~~~~l~~~~~~I 120 (414)
T 3oiy_A 87 LAD-E--------KVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120 (414)
T ss_dssp HCC-S--------SCCEEECCTTSCHHHHHHHHHHHHHTCCSE
T ss_pred Hcc-C--------CceEEEEECCCChhhHHHHHHHhhcCCCCE
Confidence 887 4 5788888888887 5666777766 665
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.63 E-value=1.1e-15 Score=141.25 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=90.1
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC--CcEEEEEcCCHhhHHHHHHHHHH
Q 028848 83 RRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 83 ~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~ 160 (202)
.++..+||..|+++|.++++.++.|+|++++++||+|||++|++|+++.+..... +.++||++||++|+.|+.+++++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999998876542 24899999999999999999999
Q ss_pred HhcCCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 161 LAAKPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 161 l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++... ++++..++||.....+...+..+++|
T Consensus 84 ~~~~~--------~~~v~~~~g~~~~~~~~~~~~~~~~I 114 (696)
T 2ykg_A 84 YFERH--------GYRVTGISGATAENVPVEQIVENNDI 114 (696)
T ss_dssp HTTTT--------TCCEEEECSSSCSSSCHHHHHHTCSE
T ss_pred HhccC--------CceEEEEeCCccccccHHHhccCCCE
Confidence 98764 57788888888777777777666665
No 32
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.62 E-value=1.8e-15 Score=135.16 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC--CcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKPSDTD 169 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~ 169 (202)
.|+++|.++++.++.|+|++++++||+|||++|++|+++.+..... +.++||++||++|+.|+.+++++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---- 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL---- 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT----
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC----
Confidence 6899999999999999999999999999999999999998876432 4589999999999999999999999875
Q ss_pred CCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 170 LEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 170 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++++..++||.....+...+..+++|
T Consensus 80 ----~~~~~~~~g~~~~~~~~~~~~~~~~i 105 (555)
T 3tbk_A 80 ----GYNIASISGATSDSVSVQHIIEDNDI 105 (555)
T ss_dssp ----TCCEEEECTTTGGGSCHHHHHHHCSE
T ss_pred ----CcEEEEEcCCCcchhhHHHHhcCCCE
Confidence 47788888888777777777766665
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.62 E-value=1.5e-15 Score=136.03 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=82.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC--CcEEEEEcCCHhhHHHHHHHHHHHhcCCC
Q 028848 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKPS 166 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~l~~~~~ 166 (202)
+...|+|+|.++++.++.|+|++++++||||||++|++|+++.+..... +.++||++|+++|+.|+.+++++++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 3457999999999999999999999999999999999999998876432 4589999999999999999999998765
Q ss_pred CCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 167 DTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 167 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++++..++||.....+...+..+++|
T Consensus 83 -------~~~~~~~~g~~~~~~~~~~~~~~~~i 108 (556)
T 4a2p_A 83 -------GYSVQGISGENFSNVSVEKVIEDSDI 108 (556)
T ss_dssp -------TCCEEECCCC-----CHHHHHHHCSE
T ss_pred -------CceEEEEeCCCCcchhHHHhhCCCCE
Confidence 46778888888777777777666665
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.61 E-value=2.8e-15 Score=145.96 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=86.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
.|| .||++|+++++.++.|+|++++++||||||++|+.+++..+..+. ++||++||++|+.|+.+++++++ ..
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~---~~Lil~PtreLa~Q~~~~l~~l~-~~-- 147 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGK---KSALVFPTVTLVKQTLERLQKLA-DE-- 147 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTC---CEEEEESSHHHHHHHHHHHHTTS-CT--
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC---eEEEEechHHHHHHHHHHHHHhh-CC--
Confidence 578 599999999999999999999999999999999999888774444 99999999999999999999977 33
Q ss_pred CCCCCCCceEEEEecCCch---HHhHHHHhhc-CCC
Q 028848 168 TDLEHKPCTVMALLDGGML---RRHKSWLKVL-YSL 199 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~i 199 (202)
++++..++||.+. .++...+..+ ++|
T Consensus 148 ------~i~v~~l~Gg~~~~er~~~~~~l~~g~~~I 177 (1104)
T 4ddu_A 148 ------KVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 177 (1104)
T ss_dssp ------TSCEEEECTTCCTTHHHHHHHHHHTSCCSE
T ss_pred ------CCeEEEEeCCCCHHHHHHHHHHHhCCCCCE
Confidence 5788888888887 6777778776 776
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.60 E-value=3.2e-16 Score=141.00 Aligned_cols=98 Identities=27% Similarity=0.356 Sum_probs=71.0
Q ss_pred cHHhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 68 TLRELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
.+.++...++.+.+.+.+.+.|+..|+++|+++++.+++| ++++++++||||||++|++++++.+..+..+.++||++
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4445666788899999999999999999999999999998 89999999999999999999999887776677999999
Q ss_pred CCHhhHHHHHHHHHHHhcCC
Q 028848 146 PTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 146 Pt~~La~Q~~~~~~~l~~~~ 165 (202)
|+++|+.|+.++++++....
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~ 216 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYT 216 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTS
T ss_pred CcHHHHHHHHHHHHHhCCcc
Confidence 99999999999999988654
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.59 E-value=5.5e-15 Score=139.49 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=84.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC--CcEEEEEcCCHhhHHHHHHHHHHHhcCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~l~~~~ 165 (202)
.|+..|+++|.++++.++.|+|++++++||+|||++|++|+++.+..... +.++||++|+++|+.|+.+++++++...
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 47889999999999999999999999999999999999999998876431 4589999999999999999999998765
Q ss_pred CCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 166 SDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 166 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++++..++||.....+...+..+++|
T Consensus 324 --------~~~v~~~~g~~~~~~~~~~~~~~~~I 349 (797)
T 4a2q_A 324 --------GYSVQGISGENFSNVSVEKVIEDSDI 349 (797)
T ss_dssp --------TCCEEEECCC-----CHHHHHHTCSE
T ss_pred --------CceEEEEeCCcchhhhHHHhhCCCCE
Confidence 47788888888777777777777766
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.57 E-value=5e-15 Score=139.36 Aligned_cols=98 Identities=20% Similarity=0.118 Sum_probs=83.7
Q ss_pred hCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCC
Q 028848 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPS 166 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~ 166 (202)
..|| .||++|..++|.++.|+ ++.++||+|||++|++|++.....++ +++||+||++||.|+.+.+..+.++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~---~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGK---GVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 4799 89999999999999998 89999999999999999984433343 89999999999999999999999987
Q ss_pred CCCCCCCCceEEEEecCCchHHhHHHHhhcCCCC
Q 028848 167 DTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSLT 200 (202)
Q Consensus 167 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i~ 200 (202)
++++.+++||.+... +.+..++||+
T Consensus 152 -------gl~v~~i~gg~~~~~--r~~~~~~dIv 176 (844)
T 1tf5_A 152 -------GLTVGLNLNSMSKDE--KREAYAADIT 176 (844)
T ss_dssp -------TCCEEECCTTSCHHH--HHHHHHSSEE
T ss_pred -------CCeEEEEeCCCCHHH--HHHhcCCCEE
Confidence 588999999987543 3445678874
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.57 E-value=5.5e-15 Score=137.94 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=88.3
Q ss_pred HhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchHHHHHHHHHHHHH-hcCCCcEEEEEcCCHh
Q 028848 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPV-LFSSRDCILHAQTGSGKTLTYLLLIFSLVN-AQRSAVQAVIVVPTRE 149 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~-il~g~~~l~~a~TGsGKT~~~l~~il~~l~-~~~~~~~~lil~Pt~~ 149 (202)
|.+.++++.+.+.+.+.||..|+++|.++++. +..++++++++|||||||++|.+++++.+. .+. +++|++|+++
T Consensus 3 f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~---~~l~i~P~ra 79 (720)
T 2zj8_A 3 VDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG---KAVYIVPLKA 79 (720)
T ss_dssp GGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCS---EEEEECSSGG
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCC---EEEEEcCcHH
Confidence 55669999999999999999999999999998 889999999999999999999999998776 443 9999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCch
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGML 186 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~ 186 (202)
|+.|+.++++++... ++++..++|+...
T Consensus 80 La~q~~~~~~~l~~~---------g~~v~~~~G~~~~ 107 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKI---------GLRVAMATGDYDS 107 (720)
T ss_dssp GHHHHHHHTGGGGGG---------TCCEEEECSCSSC
T ss_pred HHHHHHHHHHHHHhc---------CCEEEEecCCCCc
Confidence 999999999766543 3566666665443
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.56 E-value=1.2e-14 Score=135.46 Aligned_cols=103 Identities=22% Similarity=0.195 Sum_probs=86.6
Q ss_pred HhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 72 LCQGHVPEHVLRRMDETGYVLPTDIQREALPV-LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~-il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
|.+.++++.+.+.+.+.||..|+++|.++++. +.++++++++||||||||++|.+++++.+... +.+++|++|+++|
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~L 87 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRAL 87 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHH
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHH
Confidence 55569999999999999999999999999999 78899999999999999999999999877632 2399999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCc
Q 028848 151 GMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~ 185 (202)
+.|+.++++.+... ++++...+|+..
T Consensus 88 a~q~~~~~~~~~~~---------g~~v~~~~G~~~ 113 (715)
T 2va8_A 88 TNEKYLTFKDWELI---------GFKVAMTSGDYD 113 (715)
T ss_dssp HHHHHHHHGGGGGG---------TCCEEECCSCSS
T ss_pred HHHHHHHHHHhhcC---------CCEEEEEeCCCC
Confidence 99999999655442 355555555544
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.55 E-value=3.2e-14 Score=134.20 Aligned_cols=108 Identities=20% Similarity=0.163 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHH
Q 028848 80 HVLRRMDETGYVLPTDIQREALPVLFSS------RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQ 153 (202)
Q Consensus 80 ~l~~~l~~~g~~~~t~~Q~~~i~~il~g------~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q 153 (202)
.+.+.+...+| .||++|+++++.++++ ++++++|+||||||++|++|++..+..+. +++|++||++|+.|
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~---qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHH
Confidence 33344567899 8999999999998775 58999999999999999999999988766 99999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhHH---HHhhc-CCC
Q 028848 154 VTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHKS---WLKVL-YSL 199 (202)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~~-~~i 199 (202)
+++.++++.... ++++..++||.+..++.+ .+..+ ++|
T Consensus 433 ~~~~l~~~~~~~--------gi~v~~l~G~~~~~~r~~~~~~l~~g~~~I 474 (780)
T 1gm5_A 433 HYRRTVESFSKF--------NIHVALLIGATTPSEKEKIKSGLRNGQIDV 474 (780)
T ss_dssp HHHHHHHHHTCS--------SCCEEECCSSSCHHHHHHHHHHHHSSCCCE
T ss_pred HHHHHHHHhhhc--------CceEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 999999998765 477777777776655433 34444 554
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.54 E-value=3.5e-14 Score=130.33 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred cCCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHH
Q 028848 74 QGHVPEHVLRRMDE-TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152 (202)
Q Consensus 74 ~~gl~~~l~~~l~~-~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 152 (202)
+.++++.+.+.|++ .||..|+|+|+++|+.+++|+|+++.+|||+|||++|++|++. ..+ ++||++|+++|+.
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g---~~lVisP~~~L~~ 98 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDG---FTLVICPLISLME 98 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSS---EEEEECSCHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCC---cEEEEeCHHHHHH
Confidence 45778899999998 5999999999999999999999999999999999999999865 233 8999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhH
Q 028848 153 QVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHK 190 (202)
Q Consensus 153 Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~ 190 (202)
|+.+.++.++ +.+..+.++....++.
T Consensus 99 q~~~~l~~~g------------i~~~~l~~~~~~~~~~ 124 (591)
T 2v1x_A 99 DQLMVLKQLG------------ISATMLNASSSKEHVK 124 (591)
T ss_dssp HHHHHHHHHT------------CCEEECCSSCCHHHHH
T ss_pred HHHHHHHhcC------------CcEEEEeCCCCHHHHH
Confidence 9999999872 3445555555544443
No 42
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.54 E-value=1.4e-14 Score=131.06 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=77.3
Q ss_pred HhHhcCCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 70 RELCQGHVPEHVLRRMDE-TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~-~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
.+|+++++++.+.+.+.+ .||..|+++|.++++.+++|+|+++.+|||+|||++|++|++. ..+ .+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g---~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNG---LTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSS---EEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCC---CEEEECChH
Confidence 356677899999999998 7999999999999999999999999999999999999999874 233 799999999
Q ss_pred hhHHHHHHHHHHH
Q 028848 149 ELGMQVTKVARVL 161 (202)
Q Consensus 149 ~La~Q~~~~~~~l 161 (202)
+|+.|+.+.++.+
T Consensus 76 aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 76 SLMKDQVDQLQAN 88 (523)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999875
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=113.06 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC---CCcEEEEEcCCHhhHHH-HHHHHHHHhc
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---SAVQAVIVVPTRELGMQ-VTKVARVLAA 163 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~---~~~~~lil~Pt~~La~Q-~~~~~~~l~~ 163 (202)
.....|+++|.++++.++.++++++.++||+|||++|+.++++.+.... .+.++||++|+++|+.| +.+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3455899999999999999999999999999999999999988775432 24489999999999999 7888888876
Q ss_pred CCCCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 164 KPSDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
. ++++..+.|+.....+...+...++|
T Consensus 109 ~---------~~~v~~~~g~~~~~~~~~~~~~~~~i 135 (216)
T 3b6e_A 109 K---------WYRVIGLSGDTQLKISFPEVVKSCDI 135 (216)
T ss_dssp T---------TSCEEECCC---CCCCHHHHHHHCSE
T ss_pred c---------CceEEEEeCCcccchhHHhhccCCCE
Confidence 4 25666666666554444444434443
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.52 E-value=3.9e-15 Score=138.54 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=81.1
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHH
Q 028848 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 156 (202)
+++.+.+.+.+.||..|+++|+++++.+++++++++++|||||||++|.+++++.+..+. +++|++|+++|+.|+.+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~l~i~P~r~La~q~~~ 86 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG---KSLYVVPLRALAGEKYE 86 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC---cEEEEeCcHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998877544 89999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCceEEEEecCCc
Q 028848 157 VARVLAAKPSDTDLEHKPCTVMALLDGGM 185 (202)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~v~~~~gg~~ 185 (202)
+++.+... ++++...+|+..
T Consensus 87 ~~~~~~~~---------g~~v~~~~G~~~ 106 (702)
T 2p6r_A 87 SFKKWEKI---------GLRIGISTGDYE 106 (702)
T ss_dssp HHTTTTTT---------TCCEEEECSSCB
T ss_pred HHHHHHhc---------CCEEEEEeCCCC
Confidence 99655432 356666555544
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.52 E-value=4e-14 Score=137.44 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=79.8
Q ss_pred hCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCC
Q 028848 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPS 166 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~ 166 (202)
..||. | ++|+++|+.++.|+|++++++||||||+ |.+|++..+.. .++++||++||++|+.|+.+++++++...
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~- 126 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA- 126 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT-
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc-
Confidence 47999 9 9999999999999999999999999998 88888776653 34599999999999999999999999876
Q ss_pred CCCCCCCCc----eEEEEecCCchHHhHHHH
Q 028848 167 DTDLEHKPC----TVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 167 ~~~~~~~~~----~v~~~~gg~~~~~~~~~l 193 (202)
++ ++..++||.+..++.+.+
T Consensus 127 -------~i~~~~~v~~~~Gg~~~~~~~~~~ 150 (1054)
T 1gku_B 127 -------GVGTENLIGYYHGRIPKREKENFM 150 (1054)
T ss_dssp -------CCSGGGSEEECCSSCCSHHHHHHH
T ss_pred -------CCCccceEEEEeCCCChhhHHHHH
Confidence 34 777888888776654433
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.50 E-value=3.2e-14 Score=136.59 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC--CcEEEEEcCCHhhHHHHHHHHHHHhcCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~l~~~~ 165 (202)
.|+..|+++|.++++.++.|+|++++++||+|||++|++|+++.+..... +.++||++|+++|+.|+.+++++++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 36778999999999999999999999999999999999999988766431 4589999999999999999999998765
Q ss_pred CCCCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 166 SDTDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 166 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++++..++||.....+...+..+++|
T Consensus 324 --------~~~v~~~~G~~~~~~~~~~~~~~~~I 349 (936)
T 4a2w_A 324 --------GYSVQGISGENFSNVSVEKVIEDSDI 349 (936)
T ss_dssp --------TCCEEEECCC-----CCHHHHHHCSE
T ss_pred --------CceEEEEECCcchhhHHHHhccCCCE
Confidence 47788888888777766666666665
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.50 E-value=2.3e-14 Score=134.80 Aligned_cols=97 Identities=24% Similarity=0.079 Sum_probs=82.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
.|. .|+++|..+++.++.|+ +..++||||||++|++|++.....+. +++||+||++||.|+.+.+..+.++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~---~vlVltPTreLA~Q~~e~~~~l~~~l-- 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAENNRPLFEFL-- 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSS---CCEEEESSHHHHHHHHHHHHHHHHHT--
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCC---cEEEEcCCHHHHHHHHHHHHHHHHhc--
Confidence 464 79999999999999998 89999999999999999986544443 89999999999999999999999987
Q ss_pred CCCCCCCceEEEEecCCchHHhHHHHhhcCCCC
Q 028848 168 TDLEHKPCTVMALLDGGMLRRHKSWLKVLYSLT 200 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i~ 200 (202)
++++.+++||.+.. .+.+..++||.
T Consensus 143 ------gl~v~~i~GG~~~~--~r~~~~~~dIv 167 (853)
T 2fsf_A 143 ------GLTVGINLPGMPAP--AKREAYAADIT 167 (853)
T ss_dssp ------TCCEEECCTTCCHH--HHHHHHHSSEE
T ss_pred ------CCeEEEEeCCCCHH--HHHHhcCCCEE
Confidence 58899999988753 44556677773
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.46 E-value=1.2e-13 Score=130.51 Aligned_cols=97 Identities=20% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
.|+ .|+++|..++|.++.|+ +..++||+|||++|.+|++.....++ +++|++||++||.|..+.+..+.++.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~---~v~VvTpTreLA~Qdae~m~~l~~~l-- 179 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN---GVHIVTVNDYLAKRDSEWMGRVHRFL-- 179 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHT--
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHHHHhhc--
Confidence 688 89999999999999997 89999999999999999965443444 89999999999999999999999987
Q ss_pred CCCCCCCceEEEEecCCchHHhHHHHhhcCCCC
Q 028848 168 TDLEHKPCTVMALLDGGMLRRHKSWLKVLYSLT 200 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i~ 200 (202)
++++.+++||.+.. .+.+..++||+
T Consensus 180 ------GLsv~~i~gg~~~~--~r~~~y~~DIv 204 (922)
T 1nkt_A 180 ------GLQVGVILATMTPD--ERRVAYNADIT 204 (922)
T ss_dssp ------TCCEEECCTTCCHH--HHHHHHHSSEE
T ss_pred ------CCeEEEEeCCCCHH--HHHHhcCCCEE
Confidence 58888999987743 34455567874
No 49
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.45 E-value=1.5e-13 Score=129.69 Aligned_cols=97 Identities=19% Similarity=0.098 Sum_probs=82.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
+|+ .|+++|..++|.++.|+ +..+.||+|||++|++|++.....+. +++|++||++||.|..+.+..+.++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~---qv~VvTPTreLA~Qdae~m~~l~~~l-- 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK---GVHVVTVNDYLARRDAEWMGPVYRGL-- 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS---CCEEEESSHHHHHHHHHHHHHHHHTT--
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHHHHHHHhc--
Confidence 688 89999999999999998 89999999999999999964444444 89999999999999999999999987
Q ss_pred CCCCCCCceEEEEecCCchHHhHHHHhhcCCCC
Q 028848 168 TDLEHKPCTVMALLDGGMLRRHKSWLKVLYSLT 200 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i~ 200 (202)
++++.+++||.+. +.+.+..++||+
T Consensus 148 ------GLsv~~i~Gg~~~--~~r~~ay~~DIv 172 (997)
T 2ipc_A 148 ------GLSVGVIQHASTP--AERRKAYLADVT 172 (997)
T ss_dssp ------TCCEEECCTTCCH--HHHHHHHTSSEE
T ss_pred ------CCeEEEEeCCCCH--HHHHHHcCCCEE
Confidence 5888888888773 344455567774
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=127.26 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC---CCcEEEEEcCCHhhHHHH-HHHHHHHhcCCCC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---SAVQAVIVVPTRELGMQV-TKVARVLAAKPSD 167 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~---~~~~~lil~Pt~~La~Q~-~~~~~~l~~~~~~ 167 (202)
.|+++|.++++.++.|+++++.++||+|||++|++|+++.+..+. .+.++||++|+++|+.|+ .++++++...
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT---
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc---
Confidence 689999999999999999999999999999999999998876542 124899999999999999 9999998865
Q ss_pred CCCCCCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 168 TDLEHKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
++++..+.|+....++...+...++|
T Consensus 84 ------~~~v~~~~g~~~~~~~~~~~~~~~~I 109 (699)
T 4gl2_A 84 ------WYRVIGLSGDTQLKISFPEVVKSCDI 109 (699)
T ss_dssp ------TSCEEEEC----CCCCHHHHHHSCSE
T ss_pred ------CceEEEEeCCcchhhHHHhhhcCCCE
Confidence 26777777777766665666555554
No 51
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-13 Score=133.34 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHH
Q 028848 75 GHVPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154 (202)
Q Consensus 75 ~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~ 154 (202)
.++.+.+...+...++..|+++|.++++.++.|++++++|+||||||++|.+|++..+..++ ++||++|+++|+.|+
T Consensus 167 ~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~PtraLa~Q~ 243 (1108)
T 3l9o_A 167 TPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQK 243 (1108)
T ss_dssp STTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHH
T ss_pred CCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHHHHHHH
Confidence 34555444455555666799999999999999999999999999999999999999987666 999999999999999
Q ss_pred HHHHHHHhc
Q 028848 155 TKVARVLAA 163 (202)
Q Consensus 155 ~~~~~~l~~ 163 (202)
++.++++..
T Consensus 244 ~~~l~~~~~ 252 (1108)
T 3l9o_A 244 YRELLAEFG 252 (1108)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999998765
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.41 E-value=8.5e-13 Score=133.15 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=82.1
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHH
Q 028848 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSS-RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVT 155 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g-~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 155 (202)
+.....+++...+|..++|+|.++++.++.+ .|++++||||||||++|.+||++.+....+ .+++|++|+++|+.|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-GRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-CCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-CEEEEEcChHHHHHHHH
Confidence 4556678888889999999999999998764 679999999999999999999999876543 38999999999999999
Q ss_pred HHHHH-HhcCCCCCCCCCCCceEEEEecCCc
Q 028848 156 KVARV-LAAKPSDTDLEHKPCTVMALLDGGM 185 (202)
Q Consensus 156 ~~~~~-l~~~~~~~~~~~~~~~v~~~~gg~~ 185 (202)
+.+++ ++... +++|..++|+..
T Consensus 990 ~~~~~~f~~~~--------g~~V~~ltGd~~ 1012 (1724)
T 4f92_B 990 MDWYEKFQDRL--------NKKVVLLTGETS 1012 (1724)
T ss_dssp HHHHHHHTTTS--------CCCEEECCSCHH
T ss_pred HHHHHHhchhc--------CCEEEEEECCCC
Confidence 99875 55444 466666655543
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.40 E-value=7.2e-13 Score=133.66 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=77.9
Q ss_pred CCCCCCHHHHHHHHHHH-cCCCEEEEccCCCchHHHHHHHHHHHHHhc--------CCCcEEEEEcCCHhhHHHHHHHHH
Q 028848 89 GYVLPTDIQREALPVLF-SSRDCILHAQTGSGKTLTYLLLIFSLVNAQ--------RSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~il-~g~~~l~~a~TGsGKT~~~l~~il~~l~~~--------~~~~~~lil~Pt~~La~Q~~~~~~ 159 (202)
||+.+|++|++++|.++ +++|++++||||||||+++.+++++.+.+. ..+.++||++|+++|+.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999876 578999999999999999999999988653 235689999999999999999998
Q ss_pred HHhcCCCCCCCCCCCceEEEEecCCchH
Q 028848 160 VLAAKPSDTDLEHKPCTVMALLDGGMLR 187 (202)
Q Consensus 160 ~l~~~~~~~~~~~~~~~v~~~~gg~~~~ 187 (202)
+..... +++|..++|+....
T Consensus 156 ~~~~~~--------gi~V~~~tGd~~~~ 175 (1724)
T 4f92_B 156 KRLATY--------GITVAELTGDHQLC 175 (1724)
T ss_dssp HHHTTT--------TCCEEECCSSCSSC
T ss_pred HHHhhC--------CCEEEEEECCCCCC
Confidence 877665 57777777776543
No 54
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.40 E-value=6.4e-13 Score=118.72 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCC
Q 028848 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDL 170 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~ 170 (202)
..|++.|.++++.++.+++++++++||+|||++|+.++...+..++ .++|||+|+++|+.|+.++++++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~----- 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFS----- 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSC-----
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCC-----
Confidence 3799999999999999999999999999999999999988876543 399999999999999999999886654
Q ss_pred CCCCceEEEEecCCchHHh
Q 028848 171 EHKPCTVMALLDGGMLRRH 189 (202)
Q Consensus 171 ~~~~~~v~~~~gg~~~~~~ 189 (202)
+..+..+.+|....++
T Consensus 185 ---~~~v~~~~~~~~~~~~ 200 (510)
T 2oca_A 185 ---HAMIKKIGGGASKDDK 200 (510)
T ss_dssp ---GGGEEECGGGCCTTGG
T ss_pred ---ccceEEEecCCccccc
Confidence 3566777777665443
No 55
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.34 E-value=3.5e-12 Score=105.99 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~ 171 (202)
.|+++|.++++.++.+.+.+++++||+|||.+++.++...+..+. .++||++|+++|+.|+.++++++....
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~~------ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFS------ 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCC------
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhcccc------
Confidence 799999999999988888899999999999999998887776432 289999999999999999999987654
Q ss_pred CCCceEEEEecCCc
Q 028848 172 HKPCTVMALLDGGM 185 (202)
Q Consensus 172 ~~~~~v~~~~gg~~ 185 (202)
...+..+++|..
T Consensus 185 --~~~~~~~~~~~~ 196 (282)
T 1rif_A 185 --HAMIKKIGGGAS 196 (282)
T ss_dssp --GGGEEECSTTCS
T ss_pred --cceEEEEeCCCc
Confidence 345556666554
No 56
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.33 E-value=1.2e-11 Score=120.92 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=84.5
Q ss_pred CCHHHHHHHH-hCCCCCCCHHHHHHHHHHHc----CC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 77 VPEHVLRRMD-ETGYVLPTDIQREALPVLFS----SR--DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 77 l~~~l~~~l~-~~g~~~~t~~Q~~~i~~il~----g~--~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
......+.+. ..+|. +|+.|.++++.++. |+ |++++++||+|||++|+.+++..+..++ +++|++||++
T Consensus 588 ~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~---~vlvlvPt~~ 663 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK---QVAVLVPTTL 663 (1151)
T ss_dssp CCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC---EEEEECSSHH
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC---eEEEEechHH
Confidence 4455555554 45776 69999999999876 65 8999999999999999999988776655 9999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCchHHhH---HHHhhc-CCC
Q 028848 150 LGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGMLRRHK---SWLKVL-YSL 199 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~~-~~i 199 (202)
|+.|+++.++++.... ++++..+.++....++. +.+..+ +||
T Consensus 664 La~Q~~~~~~~~~~~~--------~i~v~~l~~~~~~~~~~~~~~~l~~g~~dI 709 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANW--------PVRIEMISRFRSAKEQTQILAEVAEGKIDI 709 (1151)
T ss_dssp HHHHHHHHHHHHSTTT--------TCCEEEESTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHHHHhhcC--------CCeEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 9999999999877654 46666666655544433 334444 554
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.31 E-value=8.9e-12 Score=120.53 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=67.2
Q ss_pred HhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 86 DETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 86 ~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
...+|. |+++|.++++.+++|++++++++||||||++|.++++..+..+. ++||++|+++|+.|+++.++++..
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~---rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHHHHS
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCC---eEEEECChHHHHHHHHHHHHHHhC
Confidence 345675 99999999999999999999999999999999999998887665 999999999999999999998764
No 58
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.28 E-value=2.2e-11 Score=105.82 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCCCCCC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSDTDLE 171 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~~~~~ 171 (202)
.|++.|.++++.++.+ ++++.++||+|||++++.++...+.. .+.++||++|+++|+.|+.++++++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~------ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLP------ 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSC------
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcc------
Confidence 5899999999999999 99999999999999999999887762 23389999999999999999999987543
Q ss_pred CCCceEEEEecCCchHHhHHHHhhcCCC
Q 028848 172 HKPCTVMALLDGGMLRRHKSWLKVLYSL 199 (202)
Q Consensus 172 ~~~~~v~~~~gg~~~~~~~~~l~~~~~i 199 (202)
..++..+.|+.... +...+...++|
T Consensus 80 --~~~v~~~~g~~~~~-~~~~~~~~~~i 104 (494)
T 1wp9_A 80 --PEKIVALTGEKSPE-ERSKAWARAKV 104 (494)
T ss_dssp --GGGEEEECSCSCHH-HHHHHHHHCSE
T ss_pred --hhheEEeeCCcchh-hhhhhccCCCE
Confidence 34555555555444 33333333443
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.28 E-value=6.6e-12 Score=121.29 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
.+|. |+++|.++++.+++|+|+++.++||||||++|++++...+..+. ++||++|+++|+.|++++++++.
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~---~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT---KTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHHc
Confidence 4564 89999999999999999999999999999999999988776555 99999999999999999998754
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.21 E-value=2.3e-12 Score=114.35 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=60.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 89 GYVLPTDIQREALPVLFSSRDC-ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~il~g~~~-l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
|+..|+|+|+ ++|.+++++++ +++++||||||++|++|++..+... +.++||++||++|+.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhcCc
Confidence 6778999986 79999999887 9999999999999999998765432 348999999999999999998643
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.20 E-value=8.1e-13 Score=121.83 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHH
Q 028848 77 VPEHVLRRMDETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 156 (202)
+.+.+++.+... ...++|+|+.+++.+++|+|+++.++||||||++|++|+++.+.. .+.++||++||++|+.|+.+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~ 233 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEE 233 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHH
Confidence 444444444442 477899998889999999999999999999999999999987754 23589999999999999999
Q ss_pred HHH
Q 028848 157 VAR 159 (202)
Q Consensus 157 ~~~ 159 (202)
.++
T Consensus 234 ~l~ 236 (618)
T 2whx_A 234 ALR 236 (618)
T ss_dssp HTT
T ss_pred Hhc
Confidence 886
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.19 E-value=3.8e-13 Score=125.10 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=62.9
Q ss_pred HHHhCCCC-----CCCHHHH-----HHHHHHH------cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 84 RMDETGYV-----LPTDIQR-----EALPVLF------SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 84 ~l~~~g~~-----~~t~~Q~-----~~i~~il------~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
++..+||. .||++|+ ++||.++ .|+|++++++||||||++|++|+++.+... +.++|||+||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 45556766 8999999 9999888 899999999999999999999999876542 3489999999
Q ss_pred HhhHHHHHHHHHHH
Q 028848 148 RELGMQVTKVARVL 161 (202)
Q Consensus 148 ~~La~Q~~~~~~~l 161 (202)
++|+.|+++.++.+
T Consensus 280 r~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 280 RVVAAEMAEALRGL 293 (673)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998754
No 63
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.19 E-value=7.2e-11 Score=95.70 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC--CcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
....++++|+++++.+..|++++++|+||||||.+|..++++.....+. .++++++.|+++|+.|+.+.+.....
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 3345789999999999999999999999999999999998886654432 45899999999999999888875443
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.18 E-value=6.2e-11 Score=104.83 Aligned_cols=64 Identities=30% Similarity=0.303 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
.|++.|.++++.++.+.+++++++||+|||++|+.++... ++ ++||++|+++|+.|+.++++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~---~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---ST---PTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CS---CEEEEESSHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CC---CEEEEECCHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999998764 33 8999999999999999999874
No 65
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.15 E-value=5.5e-11 Score=108.01 Aligned_cols=79 Identities=25% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHH----HHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 92 LPTDIQREALPV----LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 92 ~~t~~Q~~~i~~----il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
.+.|.|.+.+.. +..|+++++.+|||+|||++|++|++. .+ .+++|++||++|+.|+.+.++.+.+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~---~~v~i~~pt~~l~~q~~~~~~~l~~~~-- 74 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VK---PKVLFVVRTHNEFYPIYRDLTKIREKR-- 74 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HC---SEEEEEESSGGGHHHHHHHHTTCCCSS--
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CC---CeEEEEcCCHHHHHHHHHHHHHHhhhc--
Confidence 578999997764 467899999999999999999999987 33 399999999999999999999887654
Q ss_pred CCCCCCCceEEEEecCC
Q 028848 168 TDLEHKPCTVMALLDGG 184 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~ 184 (202)
++++..+.|+.
T Consensus 75 ------~~~~~~l~gr~ 85 (551)
T 3crv_A 75 ------NITFSFLVGKP 85 (551)
T ss_dssp ------CCCEEECCCHH
T ss_pred ------CccEEEEcccc
Confidence 46666655543
No 66
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.13 E-value=7.7e-11 Score=108.66 Aligned_cols=84 Identities=24% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCHHHHHHHH----HHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 92 LPTDIQREALP----VLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 92 ~~t~~Q~~~i~----~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
.|.+.|.+.+. .+.+|+++++.+|||+|||++|++|++..+... +.+++|++||++|+.|+.+.++.+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~-- 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTM-- 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhcc--
Confidence 47899988875 456889999999999999999999999877542 2389999999999999999999998754
Q ss_pred CCCCCCCceEEEEecCCc
Q 028848 168 TDLEHKPCTVMALLDGGM 185 (202)
Q Consensus 168 ~~~~~~~~~v~~~~gg~~ 185 (202)
+++++.+.|+.+
T Consensus 79 ------~~~~~~l~gr~~ 90 (620)
T 4a15_A 79 ------KIRAIPMQGRVN 90 (620)
T ss_dssp ------CCCEEECCCHHH
T ss_pred ------CeEEEEEECCCc
Confidence 467777776654
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.08 E-value=4.2e-10 Score=91.65 Aligned_cols=65 Identities=29% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
..|+++|.+++..++.+.+++++++||+|||.+++.++... + .+++|++|+++|+.|+.+.++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~---~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S---TPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---C---SCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---C---CCEEEEeCCHHHHHHHHHHHHhC
Confidence 37899999999999999899999999999999998887653 3 38999999999999999999873
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.94 E-value=3.7e-10 Score=99.90 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
+++|+|++++|+||||||++|++|+++.+..+ +.+++|++||++|+.|+++.++.+
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC
Confidence 56889999999999999999999999876543 348999999999999999998754
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.93 E-value=3e-10 Score=100.97 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=48.0
Q ss_pred HHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHH
Q 028848 103 VLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 103 ~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 159 (202)
.+.++++++++++||||||++|++|+++.+... +.++||++||++|+.|+.++++
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc
Confidence 356788999999999999999999999876532 3489999999999999999987
No 70
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.92 E-value=1.7e-09 Score=97.99 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHH----HHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 89 GYVLPTDIQREALPV----LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~----il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
|| .|++.|.+++.. +..|+++++.+|||+|||++|++|++.. +. +++|++||++|+.|+.+.++.+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~~---~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---KK---KVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---TC---EEEEEESCHHHHHHHHHHHGGG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---CC---cEEEEcCCHHHHHHHHHHHHhc
Confidence 56 689999998654 4688999999999999999999998642 33 9999999999999999888764
No 71
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.86 E-value=1.5e-09 Score=95.67 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=43.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 159 (202)
.|++++++++||||||++|++|+++.+... +.+++|++||++|+.|+.+.++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC
Confidence 368999999999999999999998554332 2389999999999999998875
No 72
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.86 E-value=5.3e-09 Score=98.65 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=69.5
Q ss_pred HhHhcCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHc-CCCEEEEccCCCchHHHHHHHHHHHHH--hcCCCcEEEEEcC
Q 028848 70 RELCQGHVPEHVLRRMDETGYVLPTDIQREALPVLFS-SRDCILHAQTGSGKTLTYLLLIFSLVN--AQRSAVQAVIVVP 146 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~il~-g~~~l~~a~TGsGKT~~~l~~il~~l~--~~~~~~~~lil~P 146 (202)
..|.+.++++.+.+.+...+ ..|+++|+.+|+.++. +.+++++|+||||||+ ++|++-... ....+.++++++|
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P 148 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQP 148 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEES
T ss_pred CCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCc
Confidence 34666799999999998888 7899999999988765 5679999999999999 455442221 1112458999999
Q ss_pred CHhhHHHHHHHHHHHh
Q 028848 147 TRELGMQVTKVARVLA 162 (202)
Q Consensus 147 t~~La~Q~~~~~~~l~ 162 (202)
+++|+.|+.+++....
T Consensus 149 ~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEM 164 (773)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 9999999998775543
No 73
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.81 E-value=2.4e-09 Score=97.45 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHc----C-CCEEEEccCCCchHHHHHHHHHHHHHhc------CCCcEEEEEcCCHhhHHHHH-HHH
Q 028848 91 VLPTDIQREALPVLFS----S-RDCILHAQTGSGKTLTYLLLIFSLVNAQ------RSAVQAVIVVPTRELGMQVT-KVA 158 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~----g-~~~l~~a~TGsGKT~~~l~~il~~l~~~------~~~~~~lil~Pt~~La~Q~~-~~~ 158 (202)
..|++.|.++++.++. | ++++++++||||||++++..+...+..+ ....++|||+|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3699999999998865 4 5689999999999999776666555543 14459999999999999999 777
Q ss_pred HHHhc
Q 028848 159 RVLAA 163 (202)
Q Consensus 159 ~~l~~ 163 (202)
+.++.
T Consensus 257 ~~~~~ 261 (590)
T 3h1t_A 257 TPFGD 261 (590)
T ss_dssp TTTCS
T ss_pred Hhcch
Confidence 76543
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.80 E-value=8.6e-09 Score=99.87 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHc--------------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHH
Q 028848 92 LPTDIQREALPVLFS--------------SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~--------------g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~ 157 (202)
.|+++|..|++.++. +++.+++++||||||.++ ++++..+...+...++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998865 368999999999999997 55556554433445999999999999999999
Q ss_pred HHHHhc
Q 028848 158 ARVLAA 163 (202)
Q Consensus 158 ~~~l~~ 163 (202)
++.+..
T Consensus 350 f~~f~~ 355 (1038)
T 2w00_A 350 YQRFSP 355 (1038)
T ss_dssp HHTTST
T ss_pred HHHhcc
Confidence 988764
No 75
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.71 E-value=1.7e-09 Score=100.20 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 94 TDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 94 t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
.+.|+++++.+.++++++++|+||||||.+|.+++++ .+ .++||++|||+|+.|+.+++.+...
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g---~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QG---YKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TT---CCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CC---CeEEEEcchHHHHHHHHHHHHHHhC
Confidence 3455555555667889999999999999999998875 23 3899999999999999998876553
No 76
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.55 E-value=6.7e-08 Score=89.93 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 103 VLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 103 ~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
..+.|++++++||||||||+ +++..+...+ +++|++|||+|+.|++++++++
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~~---~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK---SGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHSS---SEEEEESSHHHHHHHHHHHHHT
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC---CeEEEeCHHHHHHHHHHHHHhc
Confidence 34678899999999999998 4444444444 5699999999999999999875
No 77
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.51 E-value=4.4e-07 Score=80.52 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHH----HcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 92 LPTDIQREALPVL----FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 92 ~~t~~Q~~~i~~i----l~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
.|+|.|.++++.+ ..+.+.++..+||+|||...+..+......+. ..++||++| .+|..|+.+++++++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P-~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICP-LSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEEC-STTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEcc-HHHHHHHHHHHHHHCC
Confidence 6899999999876 45788999999999999997666555544332 337999999 5699999999998874
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.41 E-value=5.9e-07 Score=86.60 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 91 VLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
..|+|.|.+++..++.. .+++++.+||+|||.+++..+...+..++.. ++||+||+ +|+.|+.+.+.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~-rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAE-RVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCC-CEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEeCH-HHHHHHHHHHHHHh
Confidence 37899999999987763 4789999999999999988888777655433 79999999 99999999996654
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.27 E-value=1.4e-06 Score=81.33 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCCC
Q 028848 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPSD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~~ 167 (202)
.|. .|.++|-...-.+..|+ +....||+|||+++.+|++-....++ .+.|++|+..||.|-.+.+..+.++.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~L-- 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFL-- 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT--
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHh--
Confidence 355 57999999988888886 78999999999999999864444455 79999999999999999999999988
Q ss_pred CCCCCCCceEEEEec
Q 028848 168 TDLEHKPCTVMALLD 182 (202)
Q Consensus 168 ~~~~~~~~~v~~~~g 182 (202)
++++.++++
T Consensus 144 ------glsvg~i~~ 152 (822)
T 3jux_A 144 ------GLRVGVINS 152 (822)
T ss_dssp ------TCCEEEEET
T ss_pred ------CCEEEEEcC
Confidence 588888887
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.19 E-value=6.1e-06 Score=77.90 Aligned_cols=71 Identities=24% Similarity=0.199 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 92 LPTDIQREALPVLF----SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 92 ~~t~~Q~~~i~~il----~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
.+.|.|.+++..+. .+.+.++..++|.|||+..+..+...+........+||++| .+|..|+.+++.+++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC
Confidence 67899999998665 78899999999999999987777666554444447899999 7889999999998874
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.12 E-value=3.5e-06 Score=77.36 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchH--HHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 94 TDIQREALPVLFSSRDCILHAQTGSGKT--LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 94 t~~Q~~~i~~il~g~~~l~~a~TGsGKT--~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
++.|+.+++.++.++++++.|++|+||| .+++++.+..+.. ..+.++++++||..++.++.+.+...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 5577776654422 234589999999999999988876544
No 82
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.02 E-value=1.8e-05 Score=72.96 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 92 LPTDIQREALPVLFSSRD-CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~-~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
.+++-|.+|+..++..++ .+++||+|+|||.+....+.+.+..+. ++|+.+||..=+.++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~---~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL---KVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEcCchHHHHHHHHHHHhc
Confidence 579999999999887665 689999999999998888888777665 8999999999999988887654
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.02 E-value=2.5e-05 Score=72.03 Aligned_cols=72 Identities=25% Similarity=0.381 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEccCCCchHHHHHHHHHHHHHhcC----CCcEEEEEcCCHhhHHHHHHHH
Q 028848 92 LPTDIQREALPVLF---------SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR----SAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 92 ~~t~~Q~~~i~~il---------~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~----~~~~~lil~Pt~~La~Q~~~~~ 158 (202)
.+.|.|.+++..+. .+...++..+||.|||...+..+...+..+. ...++||++|+ +|..|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999998763 3456899999999999998888877665442 12368999996 8999999999
Q ss_pred HHHhcC
Q 028848 159 RVLAAK 164 (202)
Q Consensus 159 ~~l~~~ 164 (202)
.++...
T Consensus 134 ~~~~~~ 139 (644)
T 1z3i_X 134 GKWLGG 139 (644)
T ss_dssp HHHHGG
T ss_pred HHHcCC
Confidence 998754
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.69 E-value=0.00012 Score=67.33 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 90 YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 90 ~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
...+++.|..++..++....++++||+|+|||.+....+...+.. .+.++|+++||..-+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 456899999999998887778999999999998866555444431 2238999999999999998888654
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00016 Score=68.46 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHH-hcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 90 YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN-AQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 90 ~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~-~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
+..+++.|.+++..++.+.-+++.||+|+|||.+....+...+. .+. ++|+++||..-+.++.+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~---~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKD---RILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCC---eEEEEcCcHHHHHHHHHHHHhh
Confidence 45689999999999888777899999999999887665555444 344 8999999999999999998765
No 86
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.58 E-value=0.0002 Score=65.30 Aligned_cols=71 Identities=24% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC-CCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-SAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~-~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
..+|+.|++++.. ....+++.|+.|||||.+.+.-+...+..++ ..-++|++++|+..+.++.+++.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3689999999962 3457999999999999999888888777643 334799999999999999999988764
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.46 E-value=0.00033 Score=66.25 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 90 YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 90 ~~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
...+++.|.+++..++.+.-.++.|++|+|||.+....+...+.. .+.++|+++||..-+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346799999999998887778999999999998865554444431 2238999999999999998887653
No 88
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.39 E-value=0.00032 Score=64.98 Aligned_cols=68 Identities=29% Similarity=0.360 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHc----CC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 89 GYVLPTDIQREALPVLFS----SR-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~il~----g~-~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
+| .|++.|..++..+.. |. ..++.|.||||||.++...+ ... ++ .+||++|+..+|.|+++.++.+..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~--~~---~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL--GR---PALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH--TC---CEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh--CC---CEEEEecCHHHHHHHHHHHHHHCC
Confidence 56 799999999886543 33 46789999999998765433 222 33 589999999999999999999863
No 89
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00072 Score=59.66 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=49.8
Q ss_pred hCCCCCCCHHHHHHHHHHHcC----C-CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHH
Q 028848 87 ETGYVLPTDIQREALPVLFSS----R-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~il~g----~-~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 158 (202)
-..|..+++.|++++..++.. . .+++.|+.|||||.+...- +..+...+. ..+++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~-~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFI-IEALISTGE-TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHH-HHHHHHTTC-CCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHH-HHHHHhcCC-ceEEEecCcHHHHHHHHhhh
Confidence 356888999999999876532 3 7999999999999765443 333333321 26788999988877766543
No 90
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.25 E-value=0.00097 Score=60.77 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHH
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 156 (202)
.+++.|+.++..++.+..+++.|+.|+|||..... ++..+... +.++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAESL--GLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHHT--TCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHhc--CCeEEEecCcHHHHHHhHh
Confidence 47999999999999888999999999999976433 33333322 2378999999988888765
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.25 E-value=0.00062 Score=62.77 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC-CCcEEEEEcCCHhhHHHHHHHHHHHhcC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-SAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~-~~~~~lil~Pt~~La~Q~~~~~~~l~~~ 164 (202)
.+|+.|++++.. .+..+++.|..|||||.+.+.-+...+...+ ..-+.|+++.|+..+..+.+++..+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 478999999864 2557899999999999998888887776533 3447899999999999999999887543
No 92
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.10 E-value=0.00091 Score=65.98 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC---CCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---SAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~---~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
.+|+.|.++|.. .+.++++.|..|||||.+.+.-++..+..+. ..-+.|++++|+..+..+.+++...
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 579999999864 3779999999999999999888888887654 3347899999999999999888763
No 93
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.07 E-value=0.0018 Score=60.48 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcC-CCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-SAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~-~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
..+|+.|++++.. ....+++.|..|||||.+...-+...+...+ ..-+.|+++.|+..+..+.+++..+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 3589999998864 3457899999999999999888888876533 334789999999999999999887653
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.26 E-value=0.0089 Score=55.24 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHH----cCC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhc
Q 028848 92 LPTDIQREALPVLF----SSR-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 92 ~~t~~Q~~~i~~il----~g~-~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~ 163 (202)
.|+..|..++..+. .|. ..++.|.||||||.+....+ ... ++ .+||++|+..+|.|+++.++.+..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~--~~---~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEV--NK---PTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH--CC---CEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHh--CC---CEEEEECCHHHHHHHHHHHHHHcC
Confidence 68999998887654 343 46788999999987654333 222 33 589999999999999999999963
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.51 E-value=0.04 Score=41.56 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHH---------cCCCEEEEccCCCchHHHHHH
Q 028848 94 TDIQREALPVLF---------SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 94 t~~Q~~~i~~il---------~g~~~l~~a~TGsGKT~~~l~ 126 (202)
++.|+.++..+. .|..++++|++|+|||...-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 556766665542 467899999999999966543
No 96
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.91 E-value=0.16 Score=46.06 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCCC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPS 166 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~~ 166 (202)
.++|.|+..+..+-..+.+++..+-|+|||.+....++..+...+ +..++++.|+.+.+..+.+.++.+.+..+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999987755667899999999999987655554443332 34899999999999999998988877653
No 97
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.49 E-value=0.21 Score=43.16 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHhcCC
Q 028848 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~~~~ 165 (202)
.++|.|+..+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|+++.+..+.+.++.+.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 6799999999876555668889999999999876665553332 233488999999999998888888777643
No 98
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.66 E-value=0.094 Score=40.30 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
|+-.++.|+.|+|||...+-.+......+. +++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~---~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK---KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC---EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeecc
Confidence 555789999999999988776666655555 778877763
No 99
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.53 E-value=0.12 Score=40.37 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=34.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
.|.-+++.|++|+|||...+..+......+. .++++.-+. -..++.+++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSS-CHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccC-CHHHHHHHHHHc
Confidence 3566899999999999886665555554444 677776443 345666655533
No 100
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.75 E-value=0.11 Score=40.36 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=29.8
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
|+=.+++|+.|||||...+-.+.+...++. +++++-|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 455788999999999988877777666666 788887764
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.56 E-value=0.12 Score=37.69 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=16.8
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..+.+++++|++|+|||.+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45678999999999999764
No 102
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.55 E-value=0.12 Score=41.28 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=30.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
.|.-+++.|++|+|||...+-.+.....++. +++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEecc
Confidence 3555788999999999988777777666655 777776654
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.55 E-value=0.067 Score=47.21 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=33.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHH
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 160 (202)
.++.|+.|+|||......+ .. + ..+|++||++++..+.+.+.+
T Consensus 164 ~~I~G~aGsGKTt~I~~~~----~~-~---~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV----NF-E---EDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC----CT-T---TCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHh----cc-C---CeEEEeCCHHHHHHHHHHhhh
Confidence 6889999999998764332 11 2 459999999999999888853
No 104
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.23 E-value=0.14 Score=37.37 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.8
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..+.+++++|++|+|||.+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35578999999999999765
No 105
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.73 E-value=0.2 Score=39.17 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEcCCHhhHHHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~ 160 (202)
|.-+++.|++|+|||...+..+.+.... +. .++++.-+-. ..++.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~---~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSC-HHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC---CceeecccCC-HHHHHHHHHH
Confidence 4568999999999998776655554433 34 5677665532 4555555544
No 106
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.72 E-value=0.17 Score=39.70 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
.|+=.+++|+.|||||.-.+..+-+...+++ +++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~---kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEccc
Confidence 3556789999999999888888887777766 88999887
No 107
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.60 E-value=0.24 Score=42.72 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=30.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 152 (202)
..++++.|+||||||...-..+.+.+..+. .++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~---~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGD---RMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTC---EEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCC---cEEEEeCCCchhH
Confidence 468999999999999875333334444443 7788889888764
No 108
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.54 E-value=0.43 Score=39.66 Aligned_cols=56 Identities=14% Similarity=-0.018 Sum_probs=36.1
Q ss_pred HHHHHc----CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHH
Q 028848 101 LPVLFS----SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 101 i~~il~----g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 160 (202)
+..++. |.-+++.|++|+|||...+..+.+....+. .+++++-+- -..|+..++..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~---~vl~~slE~-s~~~l~~R~~~ 117 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD---VVNLHSLEM-GKKENIKRLIV 117 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTC---EEEEEESSS-CHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEECCC-CHHHHHHHHHH
Confidence 444554 345899999999999776665555554443 788888662 34455555443
No 109
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.39 E-value=0.35 Score=36.82 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l 132 (202)
..++++|++|+|||.... .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 679999999999997643 344434
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.25 E-value=0.49 Score=36.32 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
|.-+++.|++|+|||......+......+. .++++.... ...++...+..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~---~v~~~~~~~-~~~~~~~~~~~~~ 74 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGD---PCIYVTTEE-SRDSIIRQAKQFN 74 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTC---CEEEEESSS-CHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC---eEEEEEccc-CHHHHHHHHHHhc
Confidence 566889999999999765544433333333 566655332 2445555555443
No 111
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=91.01 E-value=0.35 Score=47.30 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=36.6
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHH
Q 028848 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 159 (202)
++.|..|||||.+.+.-+...+..+..+.+.|++||+. .+-++.+++.
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~ 52 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELA 52 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHT
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHH
Confidence 67899999999999988888887765556899999986 3444444443
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.88 E-value=0.21 Score=36.94 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|..+++.|++|+|||...-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577899999999999866433
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.83 E-value=0.37 Score=43.13 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHcCCCEEEEccCCCchHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~ 124 (202)
+..|..+++.|+||||||...
T Consensus 257 v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHH
T ss_pred HhCCCEEEEECCCCCCHHHHH
Confidence 467888999999999999653
No 114
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.75 E-value=0.5 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCchHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
+.+++++|++|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999966543
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.62 E-value=0.3 Score=38.80 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
|+=.+++|+.|||||...+-.+.....++. +++++-|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 444668899999999998888887777777 8899888754
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.78 E-value=0.44 Score=36.69 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..++++|++|+|||...-
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997653
No 117
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.76 E-value=0.37 Score=40.13 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=37.0
Q ss_pred HHHHHHcC-----CCEEEEccCCCchHHHHHHHHHHHHHh---cCCCcEEEEEcCCHhh-HHHHHHHHHHH
Q 028848 100 ALPVLFSS-----RDCILHAQTGSGKTLTYLLLIFSLVNA---QRSAVQAVIVVPTREL-GMQVTKVARVL 161 (202)
Q Consensus 100 ~i~~il~g-----~~~l~~a~TGsGKT~~~l~~il~~l~~---~~~~~~~lil~Pt~~L-a~Q~~~~~~~l 161 (202)
.++.++.| .-+++.|++|+|||...+..+...... +..+-.++++.-+..+ ..++...+.++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35566643 458999999999998766655443222 1112378888766543 44555555443
No 118
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.78 E-value=0.45 Score=37.25 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchHHHHH
Q 028848 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 91 ~~~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~l 125 (202)
..-+--|..++..+..|.-+.+.|++|||||..+-
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 33456677888888889889999999999987653
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.70 E-value=0.75 Score=37.84 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..++++|++|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999664
No 120
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=88.41 E-value=0.32 Score=41.67 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.4
Q ss_pred HHHHcCCC--EEEEccCCCchHHHH
Q 028848 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||..-
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 44578876 788999999999764
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.07 E-value=1.7 Score=32.46 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999754
No 122
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=87.80 E-value=0.39 Score=40.52 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=18.4
Q ss_pred HHHHcCCC--EEEEccCCCchHHHH
Q 028848 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 34577876 788999999999775
No 123
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.79 E-value=0.26 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999764
No 124
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.77 E-value=0.76 Score=39.19 Aligned_cols=46 Identities=22% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHc------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 100 ALPVLFS------SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 100 ~i~~il~------g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
.++.++. |.-+++.|++|+|||...+..+......+. .++++..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg---~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG---VAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 3455555 345899999999999766555544433333 566665543
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.37 E-value=1.1 Score=36.09 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred HcCCCEEEEccCCCchHHHHHHHHHHHHHhcC--------CCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR--------SAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~--------~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
..|.-+++.|++|+|||...+..+. .+..+. ..-.++++.-+-.+ .++..++..+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g 91 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALG 91 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHH
Confidence 4567789999999999987655544 333331 01256666654333 44444555444
No 126
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.33 E-value=0.72 Score=38.10 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHcC-----CCEEEEccCCCchHHHHHHHHHHHHHhc---------CCC----cEEEEEcCCHhh-HHHHHHHHHH
Q 028848 100 ALPVLFSS-----RDCILHAQTGSGKTLTYLLLIFSLVNAQ---------RSA----VQAVIVVPTREL-GMQVTKVARV 160 (202)
Q Consensus 100 ~i~~il~g-----~~~l~~a~TGsGKT~~~l~~il~~l~~~---------~~~----~~~lil~Pt~~L-a~Q~~~~~~~ 160 (202)
.++.++.| .-+++.|++|+|||...+..+.+..... ..+ -.++++.-+..+ ..++...+.+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35555643 3589999999999987766554422111 111 478888766543 4555555554
Q ss_pred H
Q 028848 161 L 161 (202)
Q Consensus 161 l 161 (202)
+
T Consensus 166 ~ 166 (322)
T 2i1q_A 166 A 166 (322)
T ss_dssp H
T ss_pred c
Confidence 4
No 127
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.29 E-value=0.68 Score=39.19 Aligned_cols=42 Identities=14% Similarity=-0.017 Sum_probs=29.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhH
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La 151 (202)
-+++.|++|+|||...+..+.+....+. +-.++++..+-.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEeccchhh
Confidence 4789999999999888777766665411 12677776665553
No 128
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=87.11 E-value=0.39 Score=40.86 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.7
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 89 ~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 89 KLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHTCCEEEEEESSTTSSHHHHH
T ss_pred HhhCCCceEEEEecCCCCCCCeEE
Confidence 3467876 788999999999864
No 129
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=87.06 E-value=0.45 Score=40.41 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=17.8
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||..-
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 4467876 788999999999764
No 130
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=86.95 E-value=0.46 Score=40.51 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 3567876 788999999999774
No 131
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.95 E-value=0.65 Score=39.51 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=27.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
|.-+++.|++|+|||...+..+......+. .++++..+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeCC
Confidence 456899999999999887776666555444 56666653
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.90 E-value=0.31 Score=36.79 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|+-+.+.||+|||||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678999999999997653
No 133
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=86.82 E-value=0.47 Score=40.69 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=18.0
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3567876 788999999999875
No 134
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.79 E-value=0.65 Score=37.40 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=32.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
.|+=.+++|+.|||||...+-.+.....+++ +++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 3555788899999999998888877776666 7888877654
No 135
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=86.76 E-value=0.48 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHcCCC--EEEEccCCCchHHHH
Q 028848 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678877 788999999999765
No 136
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.73 E-value=1.5 Score=37.13 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=32.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 158 (202)
|.-+++.|++|+|||...+..+.+....+. .++|++.+-. ..|+..++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~---~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDR---GVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC---EEEEEESSSC-HHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCC-HHHHHHHH
Confidence 345889999999999877666655554444 7888876643 34444444
No 137
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=86.67 E-value=0.46 Score=40.54 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=19.1
Q ss_pred HHHHHcCCC--EEEEccCCCchHHHH
Q 028848 101 LPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..++.|.+ ++.+|.||||||...
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 344578876 788999999999875
No 138
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.62 E-value=0.99 Score=38.31 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=28.6
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhh
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~L 150 (202)
.+.++++.|+||||||...-..+......+ .+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEEeCCcCH
Confidence 456899999999999976544444433333 377777787664
No 139
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=86.61 E-value=0.47 Score=40.83 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||..-
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3577876 788999999999764
No 140
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.56 E-value=0.34 Score=39.99 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHcCCCEEEEccCCCchHHHH
Q 028848 101 LPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~il~g~~~l~~a~TGsGKT~~~ 124 (202)
.-.+..+.+++++|++|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334556789999999999999654
No 141
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.53 E-value=0.37 Score=37.09 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|+-+.+.||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997653
No 142
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=86.50 E-value=0.5 Score=40.51 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=18.2
Q ss_pred HHHHcCCC--EEEEccCCCchHHHH
Q 028848 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||...
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34577876 788999999999764
No 143
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=86.46 E-value=0.48 Score=40.35 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHcCCC--EEEEccCCCchHHHH
Q 028848 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34567876 788999999999875
No 144
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.46 E-value=1.5 Score=35.20 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..++++|++|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999764
No 145
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=86.46 E-value=0.48 Score=40.51 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.8
Q ss_pred HHHHHcCCC--EEEEccCCCchHHHH
Q 028848 101 LPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..++.|.+ ++.+|.||||||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344578876 788999999999774
No 146
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.45 E-value=1.5 Score=38.14 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHc--CCCEEEEccCCCchHHHHHHHHHHHHH
Q 028848 95 DIQREALPVLFS--SRDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 95 ~~Q~~~i~~il~--g~~~l~~a~TGsGKT~~~l~~il~~l~ 133 (202)
+.+...+..++. |.-+++.||||||||... ..++..+.
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~ 192 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELN 192 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcC
Confidence 445555554443 345889999999999653 33444443
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.43 E-value=0.98 Score=35.14 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~i 128 (202)
.|.-+.+.||+|+|||......+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 46678999999999997765444
No 148
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=86.41 E-value=0.47 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=17.8
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3467876 788999999999775
No 149
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.30 E-value=0.66 Score=36.95 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..++++|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4568999999999999654
No 150
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=86.28 E-value=0.48 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||..-
T Consensus 100 ~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 100 SFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCceeee
Confidence 3467876 788999999999775
No 151
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.28 E-value=0.43 Score=40.51 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.0
Q ss_pred HHcCCCEEEEccCCCchHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~ 124 (202)
+..|..+++.|+||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 467889999999999999654
No 152
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.94 E-value=0.41 Score=36.63 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=17.0
Q ss_pred HcCCCEEEEccCCCchHHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~l 125 (202)
..++.+++.|++|||||.+.-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999998753
No 153
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.83 E-value=0.28 Score=36.14 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
...++++|++|+|||...-
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999996643
No 154
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=85.82 E-value=0.49 Score=40.47 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=18.0
Q ss_pred HHHHcCCC--EEEEccCCCchHHHH
Q 028848 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||...
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 34567876 788999999999754
No 155
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.80 E-value=1.1 Score=34.24 Aligned_cols=35 Identities=17% Similarity=0.003 Sum_probs=23.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
|.-+++.|++|+|||......+. ..+. .++++.-+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~---~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGK---KVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCS---EEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCC---cEEEEECC
Confidence 45689999999999977655443 3333 66666533
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.72 E-value=0.37 Score=39.18 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.+++++|++|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 157
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.69 E-value=0.86 Score=38.25 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..++++||+|+|||.+.
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999874
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.66 E-value=0.99 Score=38.19 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=25.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcC
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~P 146 (202)
|.-+++.|++|+|||...+..+......+. .++++.-
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEEC
Confidence 356899999999999887766655554443 5555543
No 159
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=85.49 E-value=0.52 Score=40.49 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.6
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3467876 788999999999764
No 160
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.44 E-value=0.55 Score=41.90 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCchHHHH
Q 028848 98 REALPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 98 ~~~i~~il~g~~~l~~a~TGsGKT~~~ 124 (202)
..+.-.+..+.+++++|++|+|||...
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 444555677889999999999999764
No 161
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.37 E-value=0.39 Score=34.97 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|++|||||.+.
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 162
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.20 E-value=0.7 Score=40.09 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=19.9
Q ss_pred HHHHHHcCCC--EEEEccCCCchHHHH
Q 028848 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 3455678877 788999999999775
No 163
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=85.16 E-value=0.46 Score=40.46 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchHHHH
Q 028848 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 3455678876 788999999999775
No 164
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=85.10 E-value=0.57 Score=40.48 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=17.8
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHhcCCceEEEEecCCCCCCCeEe
Confidence 3567866 788999999999774
No 165
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.01 E-value=0.47 Score=36.66 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46668899999999997653
No 166
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.99 E-value=1.8 Score=37.84 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=33.0
Q ss_pred HHHHHHcC----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 100 ALPVLFSS----RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 100 ~i~~il~g----~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
.++.++.| .-+++.|++|+|||...+..+.+....+. .+++++-+-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~---~vl~fSlEm 235 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD---VVNLHSLEM 235 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCC---EEEEEECCC
Confidence 35555544 34899999999999887777666665544 788888663
No 167
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=84.96 E-value=0.65 Score=40.47 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHHcCCC--EEEEccCCCchHHHH
Q 028848 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556678876 788999999999875
No 168
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.92 E-value=0.56 Score=34.57 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+.+.|+.|||||.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999764
No 169
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.81 E-value=0.45 Score=36.12 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999764
No 170
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.78 E-value=0.36 Score=39.19 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.4
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667899999999999764
No 171
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=84.71 E-value=0.67 Score=40.77 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=17.6
Q ss_pred HHcCCC--EEEEccCCCchHHHH
Q 028848 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 il~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||...
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 467876 788999999999775
No 172
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.70 E-value=0.46 Score=35.22 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
++-+++.|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 173
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.67 E-value=0.45 Score=39.04 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.++.++++||+|+|||...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3467999999999999764
No 174
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.66 E-value=0.46 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCchHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
++.+++.|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999987543
No 175
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.60 E-value=0.46 Score=38.47 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..++++|++|+|||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999764
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.54 E-value=0.45 Score=37.52 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++|++|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999764
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.52 E-value=0.47 Score=38.11 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..++++|++|+|||...
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3467999999999999764
No 178
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.52 E-value=0.45 Score=36.51 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.4
Q ss_pred HHcCCCEEEEccCCCchHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~ 124 (202)
+..|+-+++.|++|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345778999999999999764
No 179
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.45 E-value=0.53 Score=39.51 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.3
Q ss_pred HHcCCCEEEEccCCCchHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLT 123 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~ 123 (202)
+..|..+.+.|+||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 180
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=84.44 E-value=0.78 Score=39.95 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=17.7
Q ss_pred HHHcCCC--EEEEccCCCchHHHH
Q 028848 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEe
Confidence 3467766 788999999999774
No 181
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.40 E-value=0.32 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.2
Q ss_pred HcCCCEEEEccCCCchHHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~l 125 (202)
..+..+++.|++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346679999999999998754
No 182
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.39 E-value=1.5 Score=38.82 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=38.3
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
.|....+.|.|||||+.+....+ . ..++ ..||++|+...|.|+++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~--~~~~---p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-E--RHAG---PVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-H--HSSS---CEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-H--HhCC---CEEEEeCCHHHHHHHHHHHHhhC
Confidence 35568899999999986543322 1 1123 57999999999999999999875
No 183
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.38 E-value=0.48 Score=35.93 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.6
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999764
No 184
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=84.33 E-value=0.62 Score=39.97 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchHHHH
Q 028848 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3455678876 788999999999775
No 185
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=84.18 E-value=0.57 Score=40.53 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCHHHHHHHH--------HHHcCCC--EEEEccCCCchHHHH
Q 028848 93 PTDIQREALP--------VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 93 ~t~~Q~~~i~--------~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..-|.+++. .++.|.+ ++.+|.||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4455666654 3467776 788999999999765
No 186
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=84.15 E-value=1 Score=35.82 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=29.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHh
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~ 149 (202)
.|.-.++.|+.|||||...+-.+.....++. +++++-|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~---kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQ---KVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---ceEEEEeccC
Confidence 3555788999999999877777666655555 7788888653
No 187
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.10 E-value=1.3 Score=37.85 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=25.7
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
|.-+++.|++|+|||...+..+.+....+. .++++..+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECC
Confidence 355889999999999777666555544433 55555543
No 188
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.54 E-value=1.5 Score=34.26 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=29.3
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
-.+++++.+|.|||.+.+-..+..+..+. +++++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 36999999999999999999988888776 77776
No 189
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.51 E-value=0.5 Score=41.44 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 216 rGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeeEEECcCCCCHHHHH
Confidence 57999999999999764
No 190
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.43 E-value=0.47 Score=35.60 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+++.|++|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999764
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.28 E-value=1.2 Score=37.37 Aligned_cols=60 Identities=10% Similarity=0.034 Sum_probs=35.2
Q ss_pred HHHHHcC-----CCEEEEccCCCchHHHHHHHHHHHHHhc---CCCcEEEEEcCCHhh-HHHHHHHHHH
Q 028848 101 LPVLFSS-----RDCILHAQTGSGKTLTYLLLIFSLVNAQ---RSAVQAVIVVPTREL-GMQVTKVARV 160 (202)
Q Consensus 101 i~~il~g-----~~~l~~a~TGsGKT~~~l~~il~~l~~~---~~~~~~lil~Pt~~L-a~Q~~~~~~~ 160 (202)
++.++.| .-+++.|++|+|||...+..+....... ..+-.++++.-+..+ ..++...+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5666643 3488999999999987665554432210 122377888766532 3344444443
No 192
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.23 E-value=0.38 Score=40.45 Aligned_cols=21 Identities=10% Similarity=-0.107 Sum_probs=16.6
Q ss_pred CCCEEEEccCCCchHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~ 127 (202)
+.+++++|++|+|||.+.-..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v 65 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDV 65 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357999999999999765433
No 193
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=83.20 E-value=0.59 Score=40.21 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=18.6
Q ss_pred HHHHHcCCC--EEEEccCCCchHHHH
Q 028848 101 LPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..++.|.+ ++.+|.||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 334567876 788999999999765
No 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.17 E-value=0.54 Score=39.17 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47999999999999764
No 195
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.11 E-value=3.1 Score=33.99 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHH-HHHHHcCC-----CEEEEccCCCchHHHHHH
Q 028848 80 HVLRRMDETGYVLPTDIQREA-LPVLFSSR-----DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 80 ~l~~~l~~~g~~~~t~~Q~~~-i~~il~g~-----~~l~~a~TGsGKT~~~l~ 126 (202)
.+.+-|+-.|+. +++-.. +..++.++ .++++||+|+|||..+..
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 455666666764 665443 44566654 499999999999987753
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.01 E-value=0.61 Score=40.59 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 183 rGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCEEEESCSSSSHHHHH
T ss_pred CceEEeCCCCCCHHHHH
Confidence 67999999999999764
No 197
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=82.99 E-value=0.77 Score=39.02 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=18.7
Q ss_pred HHHHHcCCC--EEEEccCCCchHHHH
Q 028848 101 LPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..++.|.+ ++.+|.||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 344567876 788999999999765
No 198
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.98 E-value=0.53 Score=35.21 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+.+.|++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45568899999999997765
No 199
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.91 E-value=0.58 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++|++|+|||...
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999664
No 200
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.79 E-value=0.74 Score=35.92 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999764
No 201
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=82.76 E-value=0.61 Score=34.72 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+.-+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566899999999999764
No 202
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.63 E-value=1.1 Score=33.92 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.0
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 203
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.54 E-value=1.7 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=18.1
Q ss_pred CCCEEEEccCCCchHHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIF 129 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il 129 (202)
|.-+++.|++|+|||......+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45689999999999987655444
No 204
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.53 E-value=1.9 Score=38.62 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=19.8
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~ 133 (202)
+.++++.|.||||||.+.-..+...+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999775544444443
No 205
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.48 E-value=0.66 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999765
No 206
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.40 E-value=0.55 Score=38.47 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 207
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=82.36 E-value=0.48 Score=35.39 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556899999999999774
No 208
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.28 E-value=0.64 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 36999999999999764
No 209
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.25 E-value=0.66 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46999999999999764
No 210
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.18 E-value=0.8 Score=34.57 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999764
No 211
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.08 E-value=0.66 Score=37.19 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.0
Q ss_pred EEEEccCCCchHHHHHH
Q 028848 110 CILHAQTGSGKTLTYLL 126 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~ 126 (202)
+++.|++|||||...-.
T Consensus 4 i~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCcCHHHHHHH
Confidence 68899999999977543
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.05 E-value=1.7 Score=37.83 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999754
No 213
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=81.82 E-value=2.5 Score=36.71 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=33.7
Q ss_pred HHHHHHcC----CCEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEcCCHhhHHHHHHH
Q 028848 100 ALPVLFSS----RDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKV 157 (202)
Q Consensus 100 ~i~~il~g----~~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~ 157 (202)
.+..++.| .-+++.|++|+|||...+..+...... +. .++++..+.. ..|+..+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~---~Vl~~s~E~s-~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE---NVAIFSLEMS-AQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC---CEEEEESSSC-HHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC---cEEEEECCCC-HHHHHHH
Confidence 35555543 458999999999997766655555433 33 6777776533 2344443
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.82 E-value=1.1 Score=36.91 Aligned_cols=19 Identities=32% Similarity=0.636 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
....++++|++|+|||.+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3567999999999999764
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.78 E-value=0.64 Score=40.80 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 216 rGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999764
No 216
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.77 E-value=0.72 Score=34.76 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999875
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.55 E-value=0.67 Score=40.58 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||...
T Consensus 207 rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999764
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.48 E-value=0.87 Score=35.10 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+-+++.||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999764
No 219
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.46 E-value=0.71 Score=33.74 Aligned_cols=16 Identities=19% Similarity=-0.045 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|+.|||||.+.
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999774
No 220
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.40 E-value=0.72 Score=38.35 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56999999999999764
No 221
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.37 E-value=1.9 Score=44.70 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHc------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCH
Q 028848 101 LPVLFS------SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 101 i~~il~------g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~ 148 (202)
++.++. |+.++++||+|+|||...+..+.+...++. +++++..+-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEccc
Confidence 667776 578999999999999988777666665544 677776553
No 222
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.29 E-value=0.82 Score=35.12 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHcCCCEEEEccCCCchHHHH
Q 028848 103 VLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..|.-+.+.||+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888899999999999765
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.83 E-value=0.86 Score=35.88 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=17.0
Q ss_pred HHcCCCEEEEccCCCchHHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~l 125 (202)
+-.|.-+.+.||+|+|||..+=
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4567789999999999997653
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.80 E-value=2 Score=35.42 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~i 128 (202)
+.-+++.|++|+|||.......
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4458889999999998765443
No 225
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.74 E-value=2 Score=36.54 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.3
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|..+++.|+||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999664
No 226
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.67 E-value=1.2 Score=36.68 Aligned_cols=17 Identities=29% Similarity=0.426 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.+++++|++|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999764
No 227
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=80.67 E-value=2.6 Score=41.28 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=42.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcC---------CCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---------SAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~---------~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
.|. .++.|.-|||||.+...-++..+...+ ..-+.|++.=|+.=|..+.+++.+.
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 343 489999999999999888888875321 2237899999998888888777654
No 228
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.55 E-value=0.93 Score=38.17 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
...++++|++|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999764
No 229
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=80.52 E-value=0.91 Score=34.62 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999775
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.49 E-value=1 Score=38.22 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.1
Q ss_pred CCEEEEccCCCchHHHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~ 127 (202)
+-+++.||||||||......
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999776543
No 231
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.44 E-value=0.79 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..++++|++|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999764
No 232
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.33 E-value=1.8 Score=34.98 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=23.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEcC
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVP 146 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~P 146 (202)
.|.-+++.|++|+|||......+...... +. .++++.-
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~---~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK---KVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC---CEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC---eEEEEeC
Confidence 45668999999999997655444333222 22 4555543
No 233
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.25 E-value=1.6 Score=44.58 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHcC------CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHH
Q 028848 100 ALPVLFSS------RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154 (202)
Q Consensus 100 ~i~~il~g------~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~ 154 (202)
.++.+|.+ +-+.++||.|||||...+..+.+...++. .++++.++.+|....
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY 1475 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH
Confidence 44555553 55999999999999999888877776666 777887776665543
No 234
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.19 E-value=1.2 Score=37.40 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=15.1
Q ss_pred CEEEEccCCCchHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
-+++.||||||||......
T Consensus 12 ~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 3788999999999776443
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.18 E-value=0.95 Score=35.29 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.1
Q ss_pred HcCCCEEEEccCCCchHHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~l 125 (202)
..|+-+++.||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 356778999999999997653
No 236
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.14 E-value=0.77 Score=33.96 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|..+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999765
No 237
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.01 E-value=3.1 Score=36.06 Aligned_cols=55 Identities=20% Similarity=0.047 Sum_probs=34.9
Q ss_pred HHHHHcC----CCEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEcCCHhhHHHHHHHHH
Q 028848 101 LPVLFSS----RDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 101 i~~il~g----~~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~ 159 (202)
+..++.| .-+++.|++|+|||...+..+.+.... +. .++++..+-. ..|+..++-
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~---~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV---GVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC---CEEEEESSSC-HHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---eEEEEECCCC-HHHHHHHHH
Confidence 5555544 348899999999997766655555432 33 6788776633 345555543
No 238
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.98 E-value=0.96 Score=38.10 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999764
No 239
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.97 E-value=0.93 Score=37.34 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999764
No 240
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.92 E-value=0.87 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999654
No 241
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.83 E-value=0.72 Score=34.87 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999775
No 242
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.74 E-value=0.86 Score=39.74 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
++.++++||+|+|||...-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999997653
No 243
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.68 E-value=0.93 Score=38.21 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.1
Q ss_pred CEEEEccCCCchHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
-+++.||||||||......
T Consensus 5 ~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHH
Confidence 4788999999999776443
No 244
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.66 E-value=0.9 Score=34.01 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.6
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..+.-+++.|+.|||||.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35567899999999999864
No 245
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.35 E-value=4.6 Score=33.42 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999765
No 246
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.29 E-value=1.5 Score=33.71 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchHHHH
Q 028848 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 93 ~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~ 124 (202)
.++.++... .+..|..+++.|++|||||...
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 345555542 3455677899999999999765
No 247
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.06 E-value=0.94 Score=36.65 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999765
No 248
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.06 E-value=1.6 Score=34.62 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=17.1
Q ss_pred CEEEEccCCCchHHHHHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l 132 (202)
.++++||+|+|||... ..+.+.+
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5999999999999765 3444444
No 249
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.98 E-value=0.56 Score=37.31 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++|++|+|||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999764
No 250
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.96 E-value=1.1 Score=35.29 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCchHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~ 127 (202)
|+-+++.|+||+|||...+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 455899999999998665443
No 251
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.91 E-value=0.96 Score=33.94 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.4
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..+.-+++.|++|||||.+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999774
No 252
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.91 E-value=0.94 Score=38.52 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~ 133 (202)
.+..+++.||||||||... ..++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 3446899999999998654 33344443
No 253
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.68 E-value=0.93 Score=36.92 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||...
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999764
No 254
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.60 E-value=0.99 Score=38.33 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++|++|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999764
No 255
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=78.50 E-value=2.6 Score=31.41 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
|..+++.|..|||||...-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999977543
No 256
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=78.49 E-value=3 Score=37.83 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=20.0
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l~ 133 (202)
.++++.|.||||||.+.-..+...+.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999776555555554
No 257
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=78.41 E-value=1.3 Score=41.08 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEccCCCchHHHH
Q 028848 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~il~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||..-
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3556688876 788999999999764
No 258
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=78.32 E-value=6.2 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCCCCHHH-HHHH---HHHHcCCCEEEEccCCCchHHHHHH
Q 028848 80 HVLRRMDETGYVLPTDIQ-REAL---PVLFSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 80 ~l~~~l~~~g~~~~t~~Q-~~~i---~~il~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.+.+.+.+.++. +++.+ ..++ ..+.....+++.||||||||.++-.
T Consensus 893 ~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 893 CLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344555556665 44444 2222 2234456799999999999998743
No 259
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.21 E-value=0.85 Score=40.39 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 244 rGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SEEEECSCTTSSHHHHH
T ss_pred CceEeeCCCCCcHHHHH
Confidence 57999999999999764
No 260
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.03 E-value=1.1 Score=36.47 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++||+|+|||...
T Consensus 46 GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEEESSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4999999999999664
No 261
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.01 E-value=6.7 Score=42.56 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCCCCHHH-HHHHHH---HHcCCCEEEEccCCCchHHHHHHH
Q 028848 79 EHVLRRMDETGYVLPTDIQ-REALPV---LFSSRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 79 ~~l~~~l~~~g~~~~t~~Q-~~~i~~---il~g~~~l~~a~TGsGKT~~~l~~ 127 (202)
+.+.+.+.+.|+. +++.+ ..++.. +.....+++.||||||||.++=..
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 4455566677775 44443 233332 233345999999999999998543
No 262
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.00 E-value=1.1 Score=37.78 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++|++|+|||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999764
No 263
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.69 E-value=1.1 Score=38.10 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.0
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|++|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999876
No 264
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.66 E-value=1 Score=35.21 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457999999999999764
No 265
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.65 E-value=2.1 Score=37.69 Aligned_cols=54 Identities=4% Similarity=-0.095 Sum_probs=34.3
Q ss_pred HHHHHcC----CCEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEcCCHhhHHHHHHHH
Q 028848 101 LPVLFSS----RDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 101 i~~il~g----~~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~ 158 (202)
++.++.| .-+++.|++|+|||...+..+.+.... +. .+++++-+-. ..|+..++
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~---~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGK---KVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCC---CEEEEESSSC-HHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCC---cEEEEeccCC-HHHHHHHH
Confidence 3445544 458999999999998776666555443 33 6788776543 33554444
No 266
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.64 E-value=1 Score=39.49 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 56999999999999764
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=77.55 E-value=1.2 Score=33.42 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+++.|++|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999986533
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.39 E-value=1.1 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999864
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.35 E-value=1.6 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.9
Q ss_pred CEEEEccCCCchHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
.+++.|+||||||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999976543
No 270
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=77.28 E-value=0.9 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999765
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.27 E-value=1.2 Score=33.82 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.-+++.|+.|||||.+.-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998753
No 272
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.23 E-value=0.75 Score=37.86 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
..+++++|++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999764
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.12 E-value=2.4 Score=37.03 Aligned_cols=34 Identities=26% Similarity=0.178 Sum_probs=22.0
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
-+++.|++|+|||.............++ +++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~---kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY---KVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEe
Confidence 3788899999999886555443333333 555544
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=77.06 E-value=1.2 Score=33.03 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 275
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=77.03 E-value=3 Score=33.29 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=21.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcC
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQR 136 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~ 136 (202)
++++.++.|+|||...+.-.......+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 5888999999999887766666665554
No 276
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.94 E-value=1.2 Score=35.81 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 4899999999999664
No 277
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=76.76 E-value=5.7 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=22.4
Q ss_pred CHHHHHHHHHH----HcCC---CEEEEccCCCchHHHHHHH
Q 028848 94 TDIQREALPVL----FSSR---DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 94 t~~Q~~~i~~i----l~g~---~~l~~a~TGsGKT~~~l~~ 127 (202)
.|.|..++..+ .+|+ .++++|+.|+|||......
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 35555555443 3443 3899999999999775443
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=76.75 E-value=1.1 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchHHHH
Q 028848 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 93 ~t~~Q~~~i~~il~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+...+ ....|.-+.+.|++|||||...
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 344444332 1234566889999999999775
No 279
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=76.72 E-value=5.1 Score=32.48 Aligned_cols=51 Identities=6% Similarity=-0.045 Sum_probs=32.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~l 161 (202)
|..+++.|.+|+|||...+.-+.+.+.++. +++++.-+ |-..++.+.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHc
Confidence 345788878888888444455556676666 77777643 3345566666554
No 280
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.69 E-value=1.7 Score=35.04 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.0
Q ss_pred HcCCCEEEEccCCCchHHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~l 125 (202)
+.|..+.+.|++|||||.+.-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999998753
No 281
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=76.67 E-value=1.3 Score=32.46 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.1
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
.++.|++|+|||..+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999774
No 282
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=76.51 E-value=1.9 Score=33.38 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.4
Q ss_pred CEEEEccCCCchHHHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLIFS 130 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~ 130 (202)
-.++.|+.|||||...+.-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999875444333
No 283
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=76.42 E-value=1.2 Score=34.60 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999874
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=76.32 E-value=2.9 Score=34.67 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=14.9
Q ss_pred CEEEEccCCCchHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
-+++.|++|+|||......
T Consensus 106 vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHH
Confidence 4778999999999775443
No 285
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=76.28 E-value=2 Score=36.61 Aligned_cols=19 Identities=47% Similarity=0.604 Sum_probs=15.8
Q ss_pred cCCC--EEEEccCCCchHHHH
Q 028848 106 SSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~--~l~~a~TGsGKT~~~ 124 (202)
.|.+ ++.+|.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 689999999999765
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.24 E-value=2.6 Score=36.99 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=22.3
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
-+++.|++|+|||.............++ +++++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~---kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGY---KVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 4788999999999887655444333333 555544
No 287
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.16 E-value=4.4 Score=33.23 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..++++|++|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 288
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.98 E-value=1.9 Score=36.54 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.7
Q ss_pred CEEEEccCCCchHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+++.|+||||||.....
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999976543
No 289
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=75.84 E-value=1.9 Score=34.82 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999764
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.80 E-value=1.4 Score=33.96 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 291
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.77 E-value=0.94 Score=35.33 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=12.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999775
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=75.76 E-value=1.2 Score=32.95 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 293
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.72 E-value=1.3 Score=36.26 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.-+++.|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999765
No 294
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=75.65 E-value=1.5 Score=36.51 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999764
No 295
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.39 E-value=1.4 Score=32.73 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999764
No 296
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.22 E-value=1.7 Score=32.36 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+++.|+.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999875
No 297
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.84 E-value=1.5 Score=32.16 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.|+.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999874
No 298
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.83 E-value=1.3 Score=33.99 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999654
No 299
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=74.71 E-value=1.4 Score=38.24 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999764
No 300
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=74.69 E-value=1.4 Score=32.69 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|+.|||||.+.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.54 E-value=1.6 Score=33.05 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+++.|++|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999874
No 302
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=74.48 E-value=1.7 Score=33.59 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999765
No 303
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.46 E-value=2.2 Score=35.38 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999765
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.44 E-value=6 Score=29.81 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=16.3
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~ 133 (202)
-+.+.|++|||||... ..++..+.
T Consensus 8 ~i~i~G~sGsGKTTl~-~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL-KKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHHhcc
Confidence 4778999999998654 33334443
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.37 E-value=3.4 Score=34.37 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=15.3
Q ss_pred CEEEEccCCCchHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~i 128 (202)
-+.+.|++|+|||.......
T Consensus 107 vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47788999999997754433
No 306
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.25 E-value=1.5 Score=33.53 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|+.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=74.20 E-value=1.4 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.056 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445778999999999764
No 308
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=74.09 E-value=1.5 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+.+.|+.|||||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999764
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=74.06 E-value=1.9 Score=31.91 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|+.|||||.+.
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999775
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.97 E-value=1.4 Score=33.37 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+.-+++.|+.|||||.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678999999999997753
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.95 E-value=1.6 Score=33.13 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+.-+++.|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999998753
No 312
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.72 E-value=2.3 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.4
Q ss_pred EEEEccCCCchHHHHHHH
Q 028848 110 CILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~ 127 (202)
+++.||||||||......
T Consensus 5 i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHH
Confidence 678999999999765443
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.46 E-value=1.9 Score=32.99 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCchHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~ 127 (202)
|.-+.+.|++|+|||......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456899999999999765443
No 314
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.40 E-value=4.9 Score=41.11 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt 147 (202)
|..++++|++|+|||...+..+.+.+..+. .++++.-+
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEEec
Confidence 567999999999999887777777666554 66666543
No 315
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.30 E-value=1.7 Score=38.57 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..++++|++|+|||.+.
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 56999999999999764
No 316
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.29 E-value=1.8 Score=32.79 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.4
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|++|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 317
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=73.17 E-value=1.7 Score=31.87 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.++++.|..|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998753
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.14 E-value=1.7 Score=32.91 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|+.|||||.+.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999875
No 319
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.04 E-value=1.7 Score=33.32 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|+.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999875
No 320
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.76 E-value=4.3 Score=33.44 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHHH
Q 028848 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
+++++||+|+|||....
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999997654
No 321
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=72.69 E-value=1.6 Score=34.89 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+.-+++.|++|||||...-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3458899999999997653
No 322
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=72.61 E-value=1.8 Score=31.55 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|+.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999774
No 323
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=72.45 E-value=5 Score=35.52 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=29.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 158 (202)
.|.-+++.|++|+|||......+-.....+. ++++++++.. ..|+...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~---~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKE---RAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTC---CEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEeCC-HHHHHHHH
Confidence 4556899999999999775544322222222 5677776543 23555444
No 324
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.38 E-value=2 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999653
No 325
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=72.37 E-value=1.7 Score=36.77 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=13.2
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
.++.|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999774
No 326
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.32 E-value=3.2 Score=37.54 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.7
Q ss_pred HHHcCCCEEEEccCCCchHHHH
Q 028848 103 VLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~il~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..|..+++.|++|+|||...
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3567889999999999999765
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.18 E-value=4.4 Score=33.47 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|.-+.+.|++|+|||...-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567889999999997653
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=72.12 E-value=1.9 Score=33.07 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+.+.|++|||||.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999998774
No 329
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.10 E-value=1.8 Score=37.90 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++||+|+|||...
T Consensus 52 ~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLA 67 (447)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999764
No 330
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.98 E-value=1.9 Score=32.06 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.1
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+++.|+.|||||.+.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.95 E-value=1.8 Score=32.36 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.4
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999764
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.89 E-value=4.3 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
|.-+.+.|++|+|||...-.
T Consensus 100 g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 33478899999999976533
No 333
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=71.60 E-value=4.3 Score=35.31 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=22.9
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
.+++.|++|+|||.............+. +++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~---kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGL---KPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHC---CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEe
Confidence 5889999999999876555444444444 555543
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.57 E-value=1.5 Score=32.44 Aligned_cols=18 Identities=33% Similarity=0.243 Sum_probs=11.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+.-+++.|+.|||||.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 335
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=71.50 E-value=2.5 Score=36.95 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=17.5
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l 132 (202)
.+++++|++|+|||...- .+...+
T Consensus 202 ~~~LL~G~pG~GKT~la~-~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE-GLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCeEEECCCCCCHHHHHH-HHHHHH
Confidence 579999999999997643 333344
No 336
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.28 E-value=2.4 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHHH
Q 028848 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
+++++|++|+|||...-
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997653
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=71.26 E-value=5.9 Score=29.91 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=16.1
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~ 133 (202)
-+.+.|+.|||||.... -++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~-~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME-KWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHhhH
Confidence 36788999999997543 3344443
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.23 E-value=2 Score=32.50 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|+.|||||.+.
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999874
No 339
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.99 E-value=2.5 Score=32.39 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|.-+.+.|++|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3457889999999997653
No 340
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.68 E-value=2 Score=33.08 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 341
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=70.65 E-value=2.1 Score=33.61 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+.-+.+.|++|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=70.61 E-value=2.2 Score=32.35 Aligned_cols=15 Identities=40% Similarity=0.337 Sum_probs=13.1
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+.+.|+.|||||.+.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 343
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=70.51 E-value=2.1 Score=31.94 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHHH
Q 028848 110 CILHAQTGSGKTLTYL 125 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l 125 (202)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997753
No 344
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.33 E-value=4.1 Score=42.33 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=28.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
.|..++++|++|+|||...+..+.+.+.++. +++++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge---~~~Fit 1116 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFID 1116 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEE
Confidence 3467999999999999988877777776655 566654
No 345
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=69.98 E-value=2.2 Score=38.18 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667999999999999764
No 346
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=69.89 E-value=2.1 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999764
No 347
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=69.73 E-value=2.1 Score=33.88 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|+.|||||...
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999774
No 348
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=69.68 E-value=2.5 Score=33.50 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999998654
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=69.67 E-value=2.2 Score=32.37 Aligned_cols=19 Identities=26% Similarity=0.059 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445789999999999764
No 350
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=69.43 E-value=2.7 Score=36.93 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
..+++++||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999764
No 351
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.39 E-value=2.3 Score=38.55 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
++++.|++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999764
No 352
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=69.35 E-value=2.4 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.381 Sum_probs=13.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3678999999999774
No 353
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.29 E-value=5.5 Score=34.63 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=22.6
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~ 145 (202)
.+++.|++|+|||............+ ++ +++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~---kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKK---KVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC---eEEEEe
Confidence 46778999999998876655444444 44 555543
No 354
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=68.89 E-value=2.8 Score=34.87 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=16.4
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
-.|.-+.+.|++|||||...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677899999999998654
No 355
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=68.82 E-value=3 Score=32.63 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999664
No 356
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.82 E-value=2.2 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 357
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.73 E-value=2.4 Score=37.57 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+.++++||+|+|||...-
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 569999999999997653
No 358
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.10 E-value=5.7 Score=32.63 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=20.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
-+.+.|++|+|||.............++ +++++
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~---~v~l~ 132 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGF---KVGLV 132 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTC---CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 3677899999999876544333333333 45444
No 359
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.09 E-value=2.4 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999764
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=68.07 E-value=2.4 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.8
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999875
No 361
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=67.81 E-value=2.9 Score=32.91 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 362
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.69 E-value=5.7 Score=33.71 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+.+.|++|+|||...-.
T Consensus 159 vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 378899999999976533
No 363
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.52 E-value=2.6 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 364
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.42 E-value=6.3 Score=34.85 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=20.0
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~il~~l 132 (202)
.|.-+++.|++|||||......++.-+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467799999999999987655433333
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=67.32 E-value=7.3 Score=29.49 Aligned_cols=17 Identities=24% Similarity=0.026 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.-+.+.|++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999765
No 366
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.22 E-value=2.4 Score=39.30 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~~l 132 (202)
..+++++|++|+|||.+. ..+.+.+
T Consensus 201 ~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999764 3333444
No 367
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=67.09 E-value=2.9 Score=34.07 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999654
No 368
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.99 E-value=3 Score=33.53 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999764
No 369
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.94 E-value=3 Score=33.39 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999654
No 370
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.90 E-value=2.9 Score=32.75 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999654
No 371
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=66.89 E-value=5.2 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999765
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=66.85 E-value=3 Score=33.10 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+.+.|++|||||.+.-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998753
No 373
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.84 E-value=3.1 Score=33.21 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999764
No 374
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.70 E-value=3.1 Score=32.96 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999764
No 375
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=66.43 E-value=6.6 Score=32.12 Aligned_cols=21 Identities=38% Similarity=0.284 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~ 127 (202)
++-+.+.|++|+|||......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 445677799999999765443
No 376
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.40 E-value=2.9 Score=33.70 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.8
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999865
No 377
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=66.39 E-value=6.4 Score=32.87 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445888999999999764
No 378
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=66.36 E-value=2.4 Score=34.26 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||..+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999764
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.22 E-value=2.1 Score=33.98 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999764
No 380
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=65.88 E-value=2.9 Score=34.76 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.2
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
.++.|++|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999875
No 381
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=65.85 E-value=3.3 Score=33.52 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999654
No 382
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.73 E-value=2.7 Score=39.59 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..++++|++|+|||...
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999764
No 383
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=65.71 E-value=2.9 Score=31.03 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=15.5
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|+.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34556889999999999543
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=65.56 E-value=3.2 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.-+.+.|+.|||||.+.
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999864
No 385
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=65.38 E-value=2.8 Score=33.26 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999664
No 386
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=65.14 E-value=3.5 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999764
No 387
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.07 E-value=6.6 Score=35.01 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+.+.|++|+|||...-.
T Consensus 295 VI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCcccHHHHHHH
Confidence 378899999999976543
No 388
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=65.04 E-value=6.4 Score=36.38 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHH
Q 028848 92 LPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157 (202)
Q Consensus 92 ~~t~~Q~~~i~~il~g--~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~ 157 (202)
.+|..|.+++..++.- ...++.|.-|.|||.+.-+.+.. +. . +++|.+|+.+=+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~--~---~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA--G---RAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS--S---CEEEECSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH--h---CcEEECCCHHHHHHHHHH
Confidence 6799999999888763 23788999999999554444433 21 1 458889998766655443
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.04 E-value=3.5 Score=33.21 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999654
No 390
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.94 E-value=3.5 Score=33.24 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999754
No 391
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.69 E-value=3.1 Score=33.48 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHHH
Q 028848 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.++++|++|+|||...-
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997643
No 392
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=64.60 E-value=25 Score=28.72 Aligned_cols=72 Identities=14% Similarity=0.024 Sum_probs=38.4
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhc-CCCcEEEEEcCC--HhhHHHHHHHHHHHhcCCCCCCCCCCCceEEEEecCCc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQ-RSAVQAVIVVPT--RELGMQVTKVARVLAAKPSDTDLEHKPCTVMALLDGGM 185 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~-~~~~~~lil~Pt--~~La~Q~~~~~~~l~~~~~~~~~~~~~~~v~~~~gg~~ 185 (202)
.++++||.|+|||.......-. .... ...+..+.+-|. ..-+.++.+.+..+...+ ...+.+|+.+-....
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~-~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p-----~~~~~kvviIdead~ 93 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEY-VEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP-----ELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH-HHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC-----SSSSSEEEEETTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh-CchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc-----ccCCceEEEeccHHH
Confidence 5899999999998765443322 2111 123355666665 223445555444443322 112466666655554
Q ss_pred h
Q 028848 186 L 186 (202)
Q Consensus 186 ~ 186 (202)
+
T Consensus 94 l 94 (305)
T 2gno_A 94 M 94 (305)
T ss_dssp B
T ss_pred h
Confidence 4
No 393
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=64.46 E-value=3.6 Score=32.95 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999654
No 394
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.37 E-value=3.6 Score=32.90 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999664
No 395
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.27 E-value=3.2 Score=44.27 Aligned_cols=21 Identities=48% Similarity=0.590 Sum_probs=17.8
Q ss_pred HHcCCCEEEEccCCCchHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~ 124 (202)
+..++.++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 356789999999999999764
No 396
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=64.15 E-value=7 Score=32.16 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=12.9
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+++.|+.|||||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 678999999999764
No 397
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.05 E-value=3.7 Score=33.00 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4666889999999999654
No 398
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=64.05 E-value=5.4 Score=36.94 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=14.7
Q ss_pred CEEEEccCCCchHHHHH
Q 028848 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.++++||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997753
No 399
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=63.97 E-value=3.7 Score=33.23 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 400
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=63.44 E-value=3.8 Score=33.36 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999664
No 401
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=63.29 E-value=8.6 Score=31.68 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=23.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
++..+..|.|||.+...........++ ++|++-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGK---KTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCC---cEEEEe
Confidence 566789999999987766655555544 566554
No 402
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=63.29 E-value=3.3 Score=39.15 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999764
No 403
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=63.26 E-value=5.5 Score=34.28 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHh---cCCCcEEEEEcCC
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLVNA---QRSAVQAVIVVPT 147 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l~~---~~~~~~~lil~Pt 147 (202)
.-+.+.|++|+|||......++..+.. +..+-.++++.-+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 458899999999997766444333221 1122356666544
No 404
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=63.12 E-value=3.4 Score=36.70 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.1
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++||+|+|||...
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999764
No 405
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.98 E-value=4 Score=32.98 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 49 ~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHH
Confidence 4666889999999999664
No 406
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=62.91 E-value=3 Score=32.80 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+-+.|+.|||||...
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 444778899999999775
No 407
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.88 E-value=8.3 Score=34.51 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
+-+++.|..|.|||.+...........++ ++|++.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~---rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGK---RVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCC---cEEEEE
Confidence 34677899999999998776666555555 666643
No 408
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=62.54 E-value=4.2 Score=31.14 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=23.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcCCHhhHHHHHHHHH
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 159 (202)
+++.|++|||||....... .. +..++++......-..+.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~---~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD---APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS---CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHHH----hc---CCCeEEEecCCCCCHHHHHHHH
Confidence 5889999999996554322 11 2256788775443333344443
No 409
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=62.40 E-value=34 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.092 Sum_probs=19.3
Q ss_pred cEEEEEcCCHhhHHHHHHHHHH
Q 028848 139 VQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 139 ~~~lil~Pt~~La~Q~~~~~~~ 160 (202)
.++||.++++..+..+.+.+..
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~ 56 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQ 56 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3899999999999998888874
No 410
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=62.26 E-value=8.4 Score=32.17 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=16.7
Q ss_pred CEEEEccCCCchHHHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLIFS 130 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~ 130 (202)
.+.+.|.+|+|||..+......
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999876544433
No 411
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=62.19 E-value=5.9 Score=36.54 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999875
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=62.11 E-value=1.8 Score=32.78 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.8
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+++.|+.|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999764
No 413
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=61.80 E-value=3.6 Score=32.00 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|+.|||||...
T Consensus 20 g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445788999999999753
No 414
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.20 E-value=3.8 Score=37.86 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+.+++++|++|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 357999999999999764
No 415
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.10 E-value=5.1 Score=33.79 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYLLLIFS 130 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~il~ 130 (202)
|..+++.|++|+|||...+....+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445799999999999776554433
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=61.08 E-value=4.1 Score=31.21 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=13.1
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+.+.|..|||||.+.
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999875
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.07 E-value=8.8 Score=33.34 Aligned_cols=20 Identities=40% Similarity=0.283 Sum_probs=15.2
Q ss_pred CEEEEccCCCchHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~i 128 (202)
-+.+.|++|+|||.......
T Consensus 100 vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999998755443
No 418
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=61.03 E-value=8.7 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=22.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
++..+..|.|||.+...........++ +++++
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G~---rVllv 53 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVRS---SVLLI 53 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSSS---CEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC---eEEEE
Confidence 567789999999887666555554444 66665
No 419
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=60.93 E-value=4.4 Score=30.36 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|+.|||||.+.
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999875
No 420
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.82 E-value=4.2 Score=33.30 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999764
No 421
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=60.64 E-value=6.1 Score=31.96 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..++++|+.|+|||...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HCSEEEEECCTTSSHHHHH
T ss_pred cCCeEEEECCCcCCHHHHH
Confidence 3577999999999999764
No 422
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.62 E-value=7.2 Score=30.18 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.0
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.||+||||+...
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688899999997654
No 423
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=60.60 E-value=13 Score=28.15 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=21.7
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEcC
Q 028848 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~P 146 (202)
+....+|+|||.+.+........+++ +++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~---rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGY---RTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC---CEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEcc
Confidence 34457899999887766555555555 6666544
No 424
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=60.41 E-value=3.2 Score=34.41 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4667899999999999764
No 425
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.20 E-value=4.2 Score=32.07 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|+.|||||.+.
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999775
No 426
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=59.94 E-value=11 Score=31.55 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=22.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
++..+..|.|||.+...........++ ++|++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGL---KVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSC---CEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 566789999999987666555555444 666654
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=59.74 E-value=9.2 Score=29.78 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=15.8
Q ss_pred CEEEEccCCCchHHHHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLLLIF 129 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il 129 (202)
-+++.|..|+|||........
T Consensus 16 i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 367889999999977654443
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=59.72 E-value=3 Score=31.40 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHHHH
Q 028848 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+.+.|++|||||...-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999976533
No 429
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=59.71 E-value=11 Score=33.62 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=22.1
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
.+++.|++|+|||.............+. +++++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~---kVllVd 136 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW---KTCLIC 136 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEe
Confidence 4788899999999876555444333333 455554
No 430
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.50 E-value=8.1 Score=32.23 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=12.9
Q ss_pred EEEEccCCCchHHHH
Q 028848 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+.+.|++|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999764
No 431
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=59.49 E-value=3.8 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.6
Q ss_pred EEEEccCCCchHHHHH
Q 028848 110 CILHAQTGSGKTLTYL 125 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l 125 (202)
+++.|++|+|||...-
T Consensus 51 ~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAK 66 (324)
T ss_dssp EEECSSTTSSHHHHHH
T ss_pred EEeeCcCCCCHHHHHH
Confidence 5777889999997643
No 432
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=59.31 E-value=4.1 Score=33.72 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|||||...
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 444788999999999764
No 433
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=59.29 E-value=4.8 Score=33.03 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4566889999999999764
No 434
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=59.05 E-value=4.8 Score=32.48 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|||||..+
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 666889999999999765
No 435
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=59.02 E-value=4.8 Score=31.94 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.-+.+.|++|||||...
T Consensus 25 e~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFL 41 (240)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34678999999999664
No 436
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.00 E-value=4.8 Score=37.91 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.++++|++|+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 437
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.98 E-value=4.6 Score=43.78 Aligned_cols=20 Identities=50% Similarity=0.620 Sum_probs=17.1
Q ss_pred HHcCCCEEEEccCCCchHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLT 123 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~ 123 (202)
+..++.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 45678999999999999953
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=58.87 E-value=5.5 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+.+.|+.|||||.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999875
No 439
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=58.74 E-value=8.1 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+-+++.||+||||+...
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 44788999999997654
No 440
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=58.52 E-value=4.2 Score=31.90 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+++.|+.|||||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4567899999999999764
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=58.50 E-value=5.2 Score=34.20 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+++.|++|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999998764
No 442
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=58.10 E-value=4.5 Score=32.75 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=13.8
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|+.|||||.+.
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999874
No 443
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=58.04 E-value=5.4 Score=33.48 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHcC-----CCEEEEccCCCchHHHHHHHH
Q 028848 100 ALPVLFSS-----RDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 100 ~i~~il~g-----~~~l~~a~TGsGKT~~~l~~i 128 (202)
.++.++.| .-+.+.|++|||||......+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 35556644 358899999999998765544
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=57.23 E-value=5.1 Score=34.43 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHHH
Q 028848 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-++++|++|||||...-
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997753
No 445
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=57.20 E-value=4.6 Score=30.24 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+.+.|++|+|||..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556899999999999754
No 446
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=57.00 E-value=33 Score=24.68 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=19.7
Q ss_pred EEEEEcCCHhhHHHHHHHHHHH
Q 028848 140 QAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 140 ~~lil~Pt~~La~Q~~~~~~~l 161 (202)
++||.++++..+..+.+.+...
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT
T ss_pred cEEEEECCHHHHHHHHHHHHHc
Confidence 7999999999999999888764
No 447
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=56.54 E-value=6.3 Score=29.94 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+.+.|+.|||||.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999885
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=55.92 E-value=16 Score=31.74 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=25.5
Q ss_pred HHHHHHHHHH---HcCCCEEEEccCCCchHHHHHHHHHHHHHh
Q 028848 95 DIQREALPVL---FSSRDCILHAQTGSGKTLTYLLLIFSLVNA 134 (202)
Q Consensus 95 ~~Q~~~i~~i---l~g~~~l~~a~TGsGKT~~~l~~il~~l~~ 134 (202)
..--.+|+.+ -.|..+.+.|++|+|||..... +...+.+
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~-Iar~i~~ 200 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN-IAQSIAY 200 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH-HHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHH-HHHHHhh
Confidence 3444555554 3578899999999999976543 3333433
No 449
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=55.65 E-value=5 Score=32.91 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=13.8
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.-+.+.|++|||||...
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778899999999764
No 450
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=55.36 E-value=4.8 Score=33.13 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.6
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||...
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 4688999999999764
No 451
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=54.82 E-value=6.3 Score=31.32 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHHH
Q 028848 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
...+.+.|++|||||.+.-
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468889999999997753
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=54.76 E-value=13 Score=28.70 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCchHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|.-+++.|+.|||||...-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH
Confidence 466788999999999977533
No 453
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=54.58 E-value=17 Score=28.32 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=20.5
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+..+..|.|||.+.+.........++ +++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGH---DVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCC---cEEEE
Confidence 44678899999887665544444444 66665
No 454
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=54.44 E-value=6.7 Score=28.82 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+++.|.+|+|||...
T Consensus 49 ~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36899999999999654
No 455
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=54.34 E-value=15 Score=27.99 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+..+..|.|||.+.+.........++ +++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~Vlli 37 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGR---KVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCC---eEEEE
Confidence 34567899999887665544444444 66665
No 456
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=54.30 E-value=5.7 Score=32.09 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.0
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|++|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999998653
No 457
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=54.15 E-value=7.1 Score=32.51 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=14.6
Q ss_pred CCEEE--EccCCCchHHHHH
Q 028848 108 RDCIL--HAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~--~a~TGsGKT~~~l 125 (202)
..+++ +|++|+|||...-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45888 9999999997643
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.12 E-value=7.6 Score=29.88 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchHHHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~i 128 (202)
.|+-+++.|+.|+||+...+..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999997765444
No 459
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=54.02 E-value=5.5 Score=37.62 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+|++||+|+|||+..
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 46999999999999664
No 460
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=53.94 E-value=7.1 Score=27.48 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=13.3
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|.+|+|||...
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999653
No 461
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=53.88 E-value=52 Score=23.59 Aligned_cols=22 Identities=36% Similarity=0.208 Sum_probs=19.4
Q ss_pred EEEEEcCCHhhHHHHHHHHHHH
Q 028848 140 QAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 140 ~~lil~Pt~~La~Q~~~~~~~l 161 (202)
++||.+++++-+..+.+.++..
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 8999999999999998888753
No 462
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=53.63 E-value=5.1 Score=34.43 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|+|||...
T Consensus 46 ~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5667899999999999764
No 463
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=53.36 E-value=7 Score=33.10 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 40 ~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999654
No 464
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=53.36 E-value=7.1 Score=29.11 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=13.4
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|++|+|||..+
T Consensus 7 kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3788999999999654
No 465
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=53.32 E-value=5.1 Score=31.68 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=15.0
Q ss_pred HHcCCCEEEEccCCCchHHHHHH
Q 028848 104 LFSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 104 il~g~~~l~~a~TGsGKT~~~l~ 126 (202)
+..|.-+++.|+.|||||...-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 34677899999999999977543
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=53.24 E-value=13 Score=27.52 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=18.0
Q ss_pred EccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 113 ~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
.+..|+|||.............++ +++++
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~---~vlli 36 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGY---NIAVV 36 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCCC---eEEEE
Confidence 467789999887665544444443 44444
No 467
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=53.08 E-value=16 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=20.1
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+..+..|+|||.+.+.........++ +++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGK---KTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCC---cEEEE
Confidence 34567889999887665554444444 66664
No 468
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=53.02 E-value=6.8 Score=33.27 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|+|||...
T Consensus 29 ~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4566889999999999653
No 469
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=53.00 E-value=16 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=19.0
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+..+..|.|||.+...........++ +++++
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~---~Vlli 53 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGK---KVGIL 53 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 34578899999887655544444443 45443
No 470
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=52.89 E-value=7.2 Score=29.37 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+++.|++|+|||..+-
T Consensus 13 ~~i~~~G~~g~GKTsl~~ 30 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLT 30 (218)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 358999999999996643
No 471
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=52.83 E-value=7.6 Score=34.03 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.1
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|||||...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46888999999999999764
No 472
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=52.72 E-value=7.3 Score=33.04 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 4566889999999999654
No 473
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=52.68 E-value=7.1 Score=38.25 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=38.3
Q ss_pred HcCCCEEEEccCCCchHHHHHHHHHHHHHh-cCCCcEEEEEcCCHhhHHHHHHHHHHHh
Q 028848 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~l~~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~l~ 162 (202)
..|....+.|.+||||+.+... .+.. ++ ..||++|+...|.|+++.++.+.
T Consensus 15 ~~~~~~~l~G~~gs~ka~~~a~----l~~~~~~---p~lvv~~~~~~A~~l~~el~~f~ 66 (1151)
T 2eyq_A 15 KAGEQRLLGELTGAACATLVAE----IAERHAG---PVVLIAPDMQNALRLHDEISQFT 66 (1151)
T ss_dssp STTCBCCBCCCCTTHHHHHHHH----HHHSSSS---EEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCCeEEEeCCchHHHHHHHHH----HHHhhCC---CEEEEeCCHHHHHHHHHHHHhhc
Confidence 4455567889999999765432 2222 22 58999999999999999999885
No 474
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=52.57 E-value=14 Score=28.62 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCchHHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|.-+++.|+.|||||...-.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~ 22 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNV 22 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 467789999999999977533
No 475
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=52.50 E-value=12 Score=31.19 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=22.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEEc
Q 028848 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil~ 145 (202)
-+++.+..|.|||.+...........++ +++++-
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~g~---~vllid 51 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKVRR---SVLLLS 51 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTSSS---CEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCC---cEEEEE
Confidence 3677789999999887665554444444 566554
No 476
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.47 E-value=12 Score=30.22 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..++++|+.|+|||....
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 478999999999996543
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=52.25 E-value=7.8 Score=27.40 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=13.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|.+|+|||...
T Consensus 7 ~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999654
No 478
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=52.20 E-value=7.5 Score=33.00 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4566889999999999654
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=52.04 E-value=7.5 Score=27.24 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|.+|+|||...
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=51.89 E-value=7.3 Score=30.49 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchHHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+++.|+.|||||...-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~ 23 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCN 23 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46778999999999997653
No 481
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.75 E-value=6.2 Score=37.15 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=17.2
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHH
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l 132 (202)
.+++++|++|+|||... ..+...+
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHH
Confidence 46999999999999654 3333444
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=51.60 E-value=6.1 Score=30.80 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
++-+++.|..|||||...
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 345788999999999754
No 483
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=51.39 E-value=7.9 Score=32.96 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 4666889999999999764
No 484
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=51.33 E-value=8.1 Score=27.72 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|.+|+|||...
T Consensus 10 ~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 485
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=51.29 E-value=6.4 Score=31.12 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+.-+++.|..|||||...
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3456889999999999764
No 486
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=51.28 E-value=7.4 Score=32.96 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 4688999999999774
No 487
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=51.27 E-value=7.6 Score=28.88 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=13.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|++|+|||..+
T Consensus 31 kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999664
No 488
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=50.94 E-value=6.4 Score=35.32 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.3
Q ss_pred HcCCCEEEEccCCCchHHHH
Q 028848 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 l~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|||||...
T Consensus 367 ~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999664
No 489
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=50.87 E-value=7.8 Score=34.78 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 366 ~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 4566889999999999764
No 490
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=50.87 E-value=8.4 Score=27.28 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|.+|+|||...
T Consensus 8 ~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4889999999999654
No 491
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=50.50 E-value=18 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=22.4
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+-+.+.+..|.|||.+.+.........++ +++++
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~---~Vlli 75 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGK---RVLQI 75 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCC---eEEEE
Confidence 34555589999999887665555444444 56555
No 492
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=50.38 E-value=15 Score=30.75 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=22.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHH--HhcCCCcEEEEEc
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLV--NAQRSAVQAVIVV 145 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l--~~~~~~~~~lil~ 145 (202)
++..|..|.|||.+......... ..++ +++++-
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G~---rVLLvD 55 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPNK---QFLLIS 55 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS---CEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCC---eEEEEE
Confidence 56678999999998776655554 4444 666654
No 493
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=50.35 E-value=8.3 Score=32.84 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 4666889999999999654
No 494
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=50.29 E-value=63 Score=23.45 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.6
Q ss_pred EEEEEcCCHhhHHHHHHHHHHH
Q 028848 140 QAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 140 ~~lil~Pt~~La~Q~~~~~~~l 161 (202)
++||.++++.-+..+.+.+...
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT
T ss_pred cEEEEECCHHHHHHHHHHHHhc
Confidence 7999999999999999888764
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=50.28 E-value=8.4 Score=33.01 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchHHHH
Q 028848 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 4566889999999999653
No 496
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.18 E-value=4.6 Score=37.97 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 028848 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..++++||+|+|||...
T Consensus 511 ~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCBCCTTSSHHHHH
T ss_pred CceeEEECCCCCCHHHHH
Confidence 456999999999999754
No 497
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=50.16 E-value=8.8 Score=27.10 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.5
Q ss_pred CEEEEccCCCchHHHH
Q 028848 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|.+|+|||...
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 498
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=50.10 E-value=20 Score=28.50 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+.+.+..|.|||.+.+.........++ +++++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~---rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGK---KVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCC---eEEEE
Confidence 344678999999887665554444444 55554
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=49.85 E-value=11 Score=28.88 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=21.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Q 028848 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~il~~l~~~~~~~~~lil 144 (202)
+.+.+..|.|||.+...........++ +++++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~---~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD---KIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS---CEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 445789999999887665544444443 66665
No 500
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=49.80 E-value=8.3 Score=28.26 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchHHHH
Q 028848 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+++.|.+|+|||...
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35899999999999664
Done!