BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028854
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14032|YEMB_SCHPO UPF0664 stress-induced protein C29B12.11c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC29B12.11c PE=2
SV=1
Length = 174
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 18 NELFVLARDGVEFHVDKIPGT--NQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYI 75
NE DGV + P + + +G + L+N R+V++A +F F P+ +
Sbjct: 21 NECMFDCFDGVAISILCKPPSLKSWTCTKGLLCLTNQRLVYIAKDTDCDFKDFQSPVANL 80
Query: 76 HDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSV 135
D K NQP F N SG V PV + + K+ F EGG FV + LI
Sbjct: 81 KDTKLNQPFFGANYYSGTVMPV----PNGGIPCEAEVKLQFNEGGIFNFVEAWNRLIQRF 136
Query: 136 RQYNRQSNVGTEPRVDPL 153
++ + S V +DPL
Sbjct: 137 QEVDSVSRVQ---HLDPL 151
>sp|Q4R3M1|WBP2L_MACFA Postacrosomal sheath WW domain-binding protein OS=Macaca
fascicularis GN=WBP2NL PE=2 SV=1
Length = 255
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 45 GTVYLSNIRVVFVASKPV-GNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEH 103
GT++L++ RV+F+ S + G ++F MP I + QP+F N F++ I +
Sbjct: 49 GTLFLTSYRVIFITSHSINGPMLSFMMPFDLITNLTVEQPVFAAN----FIKGTIQAAPY 104
Query: 104 RALYSTHSFKILFKEGGCGTFVPLFLNLISSV 135
+FK++F+ GG F L + SSV
Sbjct: 105 GGWEGQATFKLVFRNGGAIEFAQLMVKAASSV 136
>sp|P97765|WBP2_MOUSE WW domain-binding protein 2 OS=Mus musculus GN=Wbp2 PE=1 SV=1
Length = 261
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 1 MALNPQLFPNWMPVPFTNELFVLARDGVEF---HVDKIPGTNQVKARGTVYLSNIRVVFV 57
MALN + E +++ D VE + +P + +GTVYL+ RV+F+
Sbjct: 1 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60
Query: 58 ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
SK +F MP + D + QP+F N F++ ++ + S+K+ F
Sbjct: 61 -SKGKDAMQSFMMPFYLMKDCEIKQPVFGAN----FIKGIVKAEAGGGWEGSASYKLTFT 115
Query: 118 EGGCGTFVPLFLNLISSVRQ 137
GG F L + S +
Sbjct: 116 AGGAIEFGQRMLQVASQASR 135
>sp|Q969T9|WBP2_HUMAN WW domain-binding protein 2 OS=Homo sapiens GN=WBP2 PE=1 SV=1
Length = 261
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 1 MALNPQLFPNWMPVPFTNELFVLARDGVEF---HVDKIPGTNQVKARGTVYLSNIRVVFV 57
MALN + E +++ D VE + +P + +GTVYL+ RV+F+
Sbjct: 1 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60
Query: 58 ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
SK +F MP + D + QP+F N I G V+ + S+K+ F
Sbjct: 61 -SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVK----AEAGGGWEGSASYKLTFT 115
Query: 118 EGGCGTFVPLFLNLISSVRQ 137
GG F L + S +
Sbjct: 116 AGGAIEFGQRMLQVASQASR 135
>sp|Q9D529|WBP2L_MOUSE Postacrosomal sheath WW domain-binding protein OS=Mus musculus
GN=Wbp2nl PE=2 SV=1
Length = 359
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 36 PGTNQVKA--RGTVYLSNIRVVFVASKPVGN-FVAFDMPLLYIHDEKFNQPIFHCNNISG 92
PG+N RG ++L++ RV+FV S+ + +F MP +++ QPIF N I G
Sbjct: 38 PGSNLFSGTKRGALFLTSYRVIFVTSRADNDPMFSFTMPFHLMNNCTVEQPIFGANYIKG 97
Query: 93 FVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLF 128
++ P+ + +FKI+F++GG F L
Sbjct: 98 TIQ-AAPDGGWEG---SATFKIVFRKGGAIDFAQLM 129
>sp|Q8R478|WBP2_RAT WW domain-binding protein 2 OS=Rattus norvegicus GN=Wbp2 PE=1 SV=1
Length = 262
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 1 MALNPQLFPNWMPVPFTNELFVLARDGVEF---HVDKIPGTNQVKARGTVYLSNIRVVFV 57
MALN + E +++ D VE + +P + +GTVYL+ RV+F+
Sbjct: 1 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60
Query: 58 ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
SK +F MP + D + QP+F N F++ + + S+K+ F
Sbjct: 61 -SKGKDAMRSFMMPFYLMKDCEVKQPVFGAN----FIKGTVKAEAGGGWEGSASYKLTFT 115
Query: 118 EGGCGTFVPLFLNLISSVRQ 137
GG F L + S +
Sbjct: 116 AGGAIEFGQQMLQVASQASR 135
>sp|A3KFF6|WBP2L_BOVIN Postacrosomal sheath WW domain-binding protein OS=Bos taurus
GN=WBP2NL PE=2 SV=1
Length = 313
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44 RGTVYLSNIRVVFVASKPVGN-FVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPEN- 101
+GT++L++ RVVFV S V + ++F MP + D QPIF N I G ++ P
Sbjct: 48 KGTLFLTSYRVVFVTSHLVNDPMLSFMMPFGLMSDCTIEQPIFAPNYIKGTIQ-AAPGGG 106
Query: 102 -EHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQ 137
E +A+ FK+ F++GG F L + S+ +
Sbjct: 107 WEGQAV-----FKLSFRKGGAIEFAQLMVKAASAAAR 138
>sp|Q6ICG8|WBP2L_HUMAN Postacrosomal sheath WW domain-binding protein OS=Homo sapiens
GN=WBP2NL PE=2 SV=1
Length = 309
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 37 GTNQVKAR--GTVYLSNIRVVFVASKPVGN-FVAFDMPLLYIHDEKFNQPIFHCNNISGF 93
G+N R GT++L++ RV+F+ S + + ++F MP + + QP+F N I G
Sbjct: 39 GSNVFSGRKTGTLFLTSYRVIFITSCSISDPMLSFMMPFDLMTNLTVEQPVFAANFIKGT 98
Query: 94 VEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQ 137
++ + +FK++F+ G F L + S+ +
Sbjct: 99 IQ----AAPYGGWEGQATFKLVFRNGDAIEFAQLMVKAASAAAR 138
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 33.5 bits (75), Expect = 0.98, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 74 YIHDEKFNQPIF-HCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLI 132
++ D NQ ++ H +G V P + H L S +++ G+ + LF +
Sbjct: 3534 FLVDPVRNQRLYVHEAVKAGVVGPEL----HEQLLSAEKAVTGYRDPYSGSTISLFQAMQ 3589
Query: 133 SSV--RQYN---RQSNVGTEPRVDPLQAAQTPVD---------EMMRHAYVDPNDPTKIF 178
+ RQ+ ++ + T +DP+ + + PVD E M DP+D TK F
Sbjct: 3590 KGLVLRQHGIRLLEAQIATGGIIDPVHSHRVPVDVAYQRGYFSEEMNRVLADPSDDTKGF 3649
Query: 179 LQQPNSESQLRRRTYHSQPVE 199
PN+ L R + VE
Sbjct: 3650 F-DPNTHENLTYRQLLERCVE 3669
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 95 EPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISS--VRQYN---RQSNVGTEPR 149
E V+ H L S +K+ G + LF + VR++ ++ + T
Sbjct: 2893 EGVVGPELHHKLLSAERAVTGYKDPYTGQQISLFQAMQKGLIVREHGIRLLEAQIATGGV 2952
Query: 150 VDPLQAAQTPVDEMMRHAY---------VDPNDPTKIFLQQPNSESQL 188
+DP+ + + PVD R Y DP+D TK F PN+ L
Sbjct: 2953 IDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFF-DPNTHENL 2999
>sp|O14029|SEC16_SCHPO COPII coat assembly protein sec16 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec16 PE=1 SV=2
Length = 1995
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 81 NQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLF 128
NQP+ H N + V PV+ NE L + + F G CGT V F
Sbjct: 1061 NQPLLHSN-LHSPVSPVVDSNEDSRLKFLSTQRPAFSFGPCGTIVMAF 1107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,215,981
Number of Sequences: 539616
Number of extensions: 3191203
Number of successful extensions: 5429
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5414
Number of HSP's gapped (non-prelim): 18
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)