Query 028854
Match_columns 202
No_of_seqs 139 out of 213
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cay_A VPS36 PH domain, vacuol 99.9 1.5E-27 5.3E-32 191.4 10.4 120 7-136 17-136 (145)
2 2hth_B Vacuolar protein sortin 99.8 1.8E-20 6E-25 149.4 12.8 117 11-133 9-129 (140)
3 1w7p_D VPS36P, YLR417W; ESCRT- 97.6 7.9E-06 2.7E-10 77.6 0.0 76 7-85 9-84 (566)
4 1zsq_A Myotubularin-related pr 96.9 0.0013 4.3E-08 62.1 6.0 62 12-79 6-67 (528)
5 1lw3_A Myotubularin-related pr 96.7 0.0021 7.4E-08 61.9 6.0 62 12-79 78-139 (657)
6 1zyi_A Methylosome subunit pic 95.2 0.021 7.2E-07 46.5 4.7 56 12-76 14-71 (171)
7 3hsa_A Pleckstrin homology dom 92.5 0.3 1E-05 37.8 6.4 56 12-82 25-82 (126)
8 1pfj_A TFIIH basal transcripti 84.3 5.5 0.00019 29.9 8.0 62 39-124 16-77 (108)
9 2yf0_A Myotubularin-related pr 83.8 0.58 2E-05 43.8 3.0 36 39-78 21-56 (512)
10 3b77_A Uncharacterized protein 67.5 21 0.00073 29.3 7.7 55 12-81 19-79 (193)
11 1w7p_D VPS36P, YLR417W; ESCRT- 24.8 15 0.00053 34.7 0.0 25 110-134 254-278 (566)
No 1
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=99.94 E-value=1.5e-27 Score=191.39 Aligned_cols=120 Identities=12% Similarity=0.108 Sum_probs=107.7
Q ss_pred cCCCCceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccc
Q 028854 7 LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFH 86 (202)
Q Consensus 7 l~~~g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FG 86 (202)
++.++.|++++||.||+..++|.|...+.. ....++|++|||||||||++++ .+.++||++||.+|.+++++||+||
T Consensus 17 ~t~s~rp~L~~~E~il~~~d~V~Ly~g~~k--~~~~k~G~lyLTshRIIyv~~~-~~~~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 17 TTSSGQPLLREGEKDIFIDQSVGLYHGKSK--ILQRQRGRIFLTSQRIIYIDDA-KPTQNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp BCTTSCBCCCTTCCEEEEEEEEEEEETTEE--CTTCSSEEEEEESSEEEEEESS-CHHHHCEEEEGGGEEEEEEECSSSS
T ss_pred hccCCCcccCCCCEEEEEcCCcceecCCCC--CcCCCccEEEEEcCeEEEecCC-CCcceEEEeEhHheeeeeEEcCccc
Confidence 577899999999999999999999996432 2568999999999999999987 4678999999999999999999999
Q ss_pred cceeeEEEEecCCCCCCCCCCcceEEEEEEccCCeechHHHHHHHHHHHH
Q 028854 87 CNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVR 136 (202)
Q Consensus 87 aNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~~~~~ 136 (202)
+| ++++|.+.++ |.+...+||+|++||++||.++|++++.+++
T Consensus 94 ~s-~Ki~l~~~p~------~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 94 RS-PRLILFFKDP------SSSTEFVQLSFRKSDGVLFSQATERALENIL 136 (145)
T ss_dssp SS-CEEEEEESSC------SSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred cC-ceEEEEecCC------CCCceEEEEEEcCCCchHHHHHHHHHHHHHH
Confidence 97 8999999853 7888999999999999999999999987764
No 2
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=99.84 E-value=1.8e-20 Score=149.41 Aligned_cols=117 Identities=17% Similarity=0.053 Sum_probs=95.6
Q ss_pred CceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecccccccee
Q 028854 11 WMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNI 90 (202)
Q Consensus 11 g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~ 90 (202)
+.|+..++|.+|+..++|.|...+.. ..-++|+||||+|||||+.+.. .-.||++||..|.+++++||.|+++ -
T Consensus 9 ~~p~L~~~E~il~~~~~V~Ly~g~~k---~~~k~G~l~LTshRli~~d~~~--~~~s~~lpl~~v~~~e~~~~~f~~s-~ 82 (140)
T 2hth_B 9 TSGLLEINETLVIQQRGVRIYDGEEK---IKFDAGTLLLSTHRLIWRDQKN--HECCMAILLSQIVFIEEQAAGIGKS-A 82 (140)
T ss_dssp CCSCCCTTCCEEEEEEEEEEEETTCS---SCCCCEEEEEESSEEEEEETTC--CSCCEEEEGGGEEEEEEECCTTSSC-C
T ss_pred CCCccCCCceEEEEcCCEEEecCCCC---CCCcCCEEEEecCEEEEecCCC--CceEEEEEhHHeeeeeeeccccccC-c
Confidence 57888999999999999999996533 3448999999999999999863 4499999999999999999999876 5
Q ss_pred eEEEEecCC--C--CCCCCCCcceEEEEEEccCCeechHHHHHHHHH
Q 028854 91 SGFVEPVIP--E--NEHRALYSTHSFKILFKEGGCGTFVPLFLNLIS 133 (202)
Q Consensus 91 ~g~V~p~~~--g--g~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~~ 133 (202)
+.++...+. + .+|.+|.+...+||.|+.||+.||.++|.+++.
T Consensus 83 Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~ 129 (140)
T 2hth_B 83 KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMT 129 (140)
T ss_dssp EEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHH
T ss_pred eEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHH
Confidence 555554431 1 123358899999999999999999888866653
No 3
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=97.62 E-value=7.9e-06 Score=77.59 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred cCCCCceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecccc
Q 028854 7 LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIF 85 (202)
Q Consensus 7 l~~~g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~F 85 (202)
++..+.|+.+++|.+|+..++|-|---+ .....-.+|++|||+||||||... ...=.|+++||..|...++..-.|
T Consensus 9 ~t~s~rp~L~~~E~~l~vqd~VgLY~Gk--~Ki~~~q~G~~yLTShRiiyvD~~-~p~~~s~~l~L~~I~~~e~~agfl 84 (566)
T 1w7p_D 9 TTSSGQPLLREGEKDIFIDQSVGLYHGK--SKILQRQRGRIFLTSQRIIYIDDA-KPTQNSLGLELDDLAYVNYSSGFL 84 (566)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccCCcccCCCceEEEeecccccccCC--cCCccccCceEEEEeeeEEEecCC-CCcceEEEEEhHHcceeeeeeccc
Confidence 5677899999999999999999885432 012345789999999999999886 334479999999999888866554
No 4
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=96.86 E-value=0.0013 Score=62.06 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=46.8
Q ss_pred ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCe
Q 028854 12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEK 79 (202)
Q Consensus 12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~ 79 (202)
.+..||||.|+...++|.+.-. ..+...|+|||||+||||++... +.-.-+++||.+|...+
T Consensus 6 ~~~lLpGE~i~~~~~~V~~~~~-----~~~~~~GtL~lTn~rLiF~~~~~-~~~~~~~iPL~~I~~ve 67 (528)
T 1zsq_A 6 EPPLLPGENIKDMAKDVTYICP-----FTGAVRGTLTVTNYRLYFKSMER-DPPFVLDASLGVINRVE 67 (528)
T ss_dssp CCCCCTTCCEEEEEEEEEEEET-----TTEEEEEEEEEESSEEEEEESSS-SSCEEEEEEGGGEEEEE
T ss_pred CCccCCCCeEEEecCCEEEeCC-----CCCceeEEEEEECCEEEEEccCC-CccEEEEeeccceEEEE
Confidence 4567999999998888776321 23578999999999999999752 22234789999888655
No 5
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=96.65 E-value=0.0021 Score=61.92 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=46.6
Q ss_pred ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCe
Q 028854 12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEK 79 (202)
Q Consensus 12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~ 79 (202)
.+-.||||.++...++|.+.-. ..+...|+|||||+||||++.. .+.-.-+++||.+|...+
T Consensus 78 ~~~LLPGE~v~~~~~~V~~~~p-----~~~~~~GtL~lTnyrLiF~~~~-~~~~~~~~IPL~~I~~Ie 139 (657)
T 1lw3_A 78 EPPLLPGENIKDMAKDVTYICP-----FTGAVRGTLTVTNYRLYFKSME-RDPPFVLDASLGVINRVE 139 (657)
T ss_dssp CCCCCTTCCEEEEEEEEEEEET-----TTEEEEEEEEEESSEEEEEESS-SSSCEEEEEEGGGEEEEE
T ss_pred CCccCCCeeEEEEeCCEEEecC-----CCCceeEEEEEECCEEEEEecC-CCcceEEEecccceEEEE
Confidence 4567999999998888875321 2356889999999999999975 232334789998887654
No 6
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=95.17 E-value=0.021 Score=46.46 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=33.9
Q ss_pred ceeeCCC--cEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccc
Q 028854 12 MPVPFTN--ELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIH 76 (202)
Q Consensus 12 ~pl~~~~--E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~ 76 (202)
..++-|. |-+++.-.+|++.+.. +.-..|+||||+.||++++.+ + +.|++|+..|.
T Consensus 14 ~~~~~p~~~E~v~~~~~~v~~vl~~-----~~~g~GtLyVt~~~l~W~~~~-~---~G~sI~YpsIs 71 (171)
T 1zyi_A 14 KSFPPPGSAEGLRQQQPETEAVLNG-----KGLGTGTLYIAESRLSWLDGS-G---LGFSLEYPTIS 71 (171)
T ss_dssp -------------CBCSSEEEEBTT-----BCCCEEEEEEETTEEEEEETT-T---EEEEESSCCCS
T ss_pred ccCCCCCCccceEEEcCCEEEEECC-----CccCceEEEEEcCEEEEEcCC-C---cEEEeecCeEE
Confidence 3455677 8888888899998853 122579999999999999974 2 56777775554
No 7
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=92.54 E-value=0.3 Score=37.80 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=39.2
Q ss_pred ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCC-C-CceeeecccccccccCeeec
Q 028854 12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKP-V-GNFVAFDMPLLYIHDEKFNQ 82 (202)
Q Consensus 12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~-~-~~f~SFs~Pl~~i~d~~~~Q 82 (202)
.++.++||.|....+. .+..+..||+|||++.++. + ..-.=.|+|+..|....++.
T Consensus 25 ~~~L~~gE~I~~ayk~---------------iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siET 82 (126)
T 3hsa_A 25 SPILGDNEELQLAYXM---------------VRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVET 82 (126)
T ss_dssp GGGSCTTCCEEEEEEC---------------SSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEE
T ss_pred HHhcCCCCEEEEEehh---------------cCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEec
Confidence 5678888888775432 2256677999999999762 2 24445678999988766653
No 8
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=84.32 E-value=5.5 Score=29.89 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=40.5
Q ss_pred ccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccccceeeEEEEecCCCCCCCCCCcceEEEEEEcc
Q 028854 39 NQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118 (202)
Q Consensus 39 ~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~ 118 (202)
...+++|++||+.-||...+... +=..++.++..|.+-++ -| .|. ..+.+||..++
T Consensus 16 ~yKK~dGtL~l~~d~i~W~p~~~--~~~~vs~~~~~I~~qq~--------------SP---~~k-----~KVqLqi~l~~ 71 (108)
T 1pfj_A 16 RQKKQDGALYLMAERIAWAPEGK--DRFTISHMYADIKCQKI--------------SP---EGK-----AKIQLQLVLHA 71 (108)
T ss_dssp BCSSCBCEEEEETTEEEEECSSS--SSCSEEEETTTCCCEEE--------------CC---SSS-----SSCEEEEECSS
T ss_pred eeecCCceEEEEcceEEEccCCC--CCceEEEehhhhhccee--------------CC---CCC-----ccEEEEEEEeC
Confidence 44567799999999999999653 32445557777775332 22 221 34677777777
Q ss_pred CCeech
Q 028854 119 GGCGTF 124 (202)
Q Consensus 119 GG~~eF 124 (202)
|+...|
T Consensus 72 ~~~~~F 77 (108)
T 1pfj_A 72 GDTTNF 77 (108)
T ss_dssp SCEEEE
T ss_pred CCceEE
Confidence 776665
No 9
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=83.80 E-value=0.58 Score=43.83 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=24.6
Q ss_pred ccccccceEEeeccEEEEEeCCCCCceeeecccccccccC
Q 028854 39 NQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDE 78 (202)
Q Consensus 39 ~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~ 78 (202)
......|+|||||+||||++...+ -..+|+..|...
T Consensus 21 ~~~~~~GtL~lTn~~LiF~~~~~~----e~wi~~~~I~~V 56 (512)
T 2yf0_A 21 SNKSLTGTLYLTATHLLFIDSHQK----ETWILHHHIASV 56 (512)
T ss_dssp ---CCEEEEEECSSEEEEEESSSC----EEEEEGGGEEEE
T ss_pred CCCceeEEEEEECCEEEEeCCCCC----ceEecccceeEE
Confidence 467889999999999999995422 245666666544
No 10
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=67.51 E-value=21 Score=29.28 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=34.1
Q ss_pred ceeeCC--CcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCC-C-Cceeeeccccc--ccccCeee
Q 028854 12 MPVPFT--NELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKP-V-GNFVAFDMPLL--YIHDEKFN 81 (202)
Q Consensus 12 ~pl~~~--~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~-~-~~f~SFs~Pl~--~i~d~~~~ 81 (202)
....++ ||.|....+.+ +-.+.+||+|||++..+. + ..-.=.++|+. .|....++
T Consensus 19 ~~~Ll~EdgE~I~~ayk~i---------------rD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siE 79 (193)
T 3b77_A 19 DDYVLHEDGEKIYFLIKSK---------------TDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFE 79 (193)
T ss_dssp GGGSCGGGTCCEEEEEECS---------------SEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEE
T ss_pred hhhccCCCCCEEeeeeeec---------------ceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEE
Confidence 445566 88777643321 125567999999999653 2 23334467887 88766664
No 11
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=24.80 E-value=15 Score=34.67 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=0.0
Q ss_pred eEEEEEEccCCeechHHHHHHHHHH
Q 028854 110 HSFKILFKEGGCGTFVPLFLNLISS 134 (202)
Q Consensus 110 ~~~kl~F~~GG~~eF~~~f~~l~~~ 134 (202)
..+||.|+.||-.+|.+.+..++.+
T Consensus 254 ~~iKLSFR~gg~~~F~~~L~~aL~~ 278 (566)
T 1w7p_D 254 EFVQLSFRKSDGVLFSQATERALEN 278 (566)
T ss_dssp -------------------------
T ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Confidence 4789999999999998777666543
Done!