Query 028855
Match_columns 202
No_of_seqs 106 out of 456
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 1.6E-44 3.4E-49 290.9 18.2 152 33-187 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 1.6E-40 3.5E-45 265.4 16.4 149 26-175 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.7 5.9E-07 1.3E-11 69.5 12.4 141 29-181 3-143 (144)
4 KOG4016 Synaptic vesicle prote 44.3 2.1E+02 0.0045 24.7 13.2 147 28-187 21-170 (233)
5 PRK10591 hypothetical protein; 36.5 67 0.0015 23.9 4.0 42 159-200 39-80 (92)
6 PF05702 Herpes_UL49_5: Herpes 34.1 1E+02 0.0022 23.2 4.7 50 139-188 36-85 (98)
7 PF02468 PsbN: Photosystem II 29.2 92 0.002 19.9 3.2 27 175-201 11-37 (43)
8 PF06376 DUF1070: Protein of u 21.9 1.1E+02 0.0024 18.6 2.5 15 116-130 13-27 (34)
9 PF12304 BCLP: Beta-casein lik 21.9 4.8E+02 0.01 21.9 12.2 104 79-186 42-161 (188)
10 PF07214 DUF1418: Protein of u 21.4 2.2E+02 0.0048 21.3 4.5 40 159-198 39-78 (96)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=1.6e-44 Score=290.90 Aligned_cols=152 Identities=40% Similarity=0.623 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcceeEee--eeceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCchh
Q 028855 33 LVLRCVICGLGVLAAVLVGTDTQVREIFS--IQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNKPL 110 (202)
Q Consensus 33 l~LR~~a~~~sl~a~~vM~t~~qt~~~~~--~~~~a~fs~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~~~~~ 110 (202)
++||+++++++++|+++|+||+|+.+++. +++++||+|+++|+|+|++|+|+|+|+++|++++++.+.+++.. ..
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~---~~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF---FK 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch---hH
Confidence 47999999999999999999999999887 89999999999999999999999999999999999887776653 34
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028855 111 AWAIFSGDQMMAYLTVAAVAAAAQSAVFAKLGQPELQWLKICNMYGKFCNQVGEGIASALLVSISMVVLSCISAFSL 187 (202)
Q Consensus 111 ~~~~f~~Dqv~ayLL~SaasAA~av~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsf~A~~~~~~~s~lSa~~L 187 (202)
.|++|++||+++||++||++||+++++++|+||+|.+|+++|+++++||+|+.+|++++|+|++++++++++|++++
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=1.6e-40 Score=265.45 Aligned_cols=149 Identities=40% Similarity=0.638 Sum_probs=142.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCcceeEeeeeceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q 028855 26 RRIRLVELVLRCVICGLGVLAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVL 105 (202)
Q Consensus 26 ~~~~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~~~~~a~fs~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~ 105 (202)
|+.+..+++||+++++++++|+++|++|+||.++..++.+++|+|+++|+|+|++|+|+|+|+++|++.+++.+.+|+ .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~ 79 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L 79 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 456889999999999999999999999999999988999999999999999999999999999999999999888777 5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 028855 106 FNKPLAWAIFSGDQMMAYLTVAAVAAAAQSAVFAKLGQPELQWLKICNMYGKFCNQVGEGIASALLVSIS 175 (202)
Q Consensus 106 ~~~~~~~~~f~~Dqv~ayLL~SaasAA~av~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsf~A~~~ 175 (202)
+++...|++|++||+++||++||++||+++++++++||++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 6678899999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.67 E-value=5.9e-07 Score=69.48 Aligned_cols=141 Identities=16% Similarity=0.018 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCcceeEeeeeceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc
Q 028855 29 RLVELVLRCVICGLGVLAAVLVGTDTQVREIFSIQKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLFNK 108 (202)
Q Consensus 29 ~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~~~~~a~fs~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~~~ 108 (202)
+....+||+++++++++.+.+++....+... ......++..|.+.+.++...+++.-++...+. .+..++.
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~~~~~~ 73 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGSQ------IYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS---LKYRPRI 73 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhcccc------ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH---Hhccccc
Confidence 3456899999999999999999998743221 255667888999999999999999888876654 1222233
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 028855 109 PLAWAIFSGDQMMAYLTVAAVAAAAQSAVFAKLGQPELQWLKICNMYGKFCNQVGEGIASALLVSISMVVLSC 181 (202)
Q Consensus 109 ~~~~~~f~~Dqv~ayLL~SaasAA~av~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsf~A~~~~~~~s~ 181 (202)
...+.+++.|.+++.+-+.+..+-+.-....+.+++ +...+...+.-|+...++.+++|+.++.+..+.+
T Consensus 74 ~~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 74 PWPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999988876664433222112211 1223334457799999999999999999988764
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=2.1e+02 Score=24.66 Aligned_cols=147 Identities=14% Similarity=-0.006 Sum_probs=85.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCcceeEeee-eceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q 028855 28 IRLVELVLRCVICGLGVLAAVLVGTDTQVREIFSI-QKKAKFTDMKALVFLVVANGIAAAYSLVQGVRCTVAMLKGSVLF 106 (202)
Q Consensus 28 ~~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~~-~~~a~fs~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~ 106 (202)
++.-..++|++..+|+++-.--+.+.--+..--.. ++=.-=.+..+.+|=+++.+.++.=+++-++++.+- -+-+.++
T Consensus 21 ~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f-~qISsv~ 99 (233)
T KOG4016|consen 21 LRKPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYF-PQISSVK 99 (233)
T ss_pred hcCchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-hhhcccc
Confidence 46778999999999998877666554322211011 111223577899999999999999998888887753 1111222
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028855 107 -NKPLAWAIFSGDQMMAYLTVAAVAAAAQSAVFAKLGQPELQWLKICN-MYGKFCNQVGEGIASALLVSISMVVLSCISA 184 (202)
Q Consensus 107 -~~~~~~~~f~~Dqv~ayLL~SaasAA~av~~l~~~G~~~~~W~~vC~-~~~~FC~~~~~Sv~lsf~A~~~~~~~s~lSa 184 (202)
.|.....+++.-.+-+.|-+-+ -.++.. +|..--. ...-=-+.+.++|+++|++++.-...+.+.-
T Consensus 100 ~RkraVl~Dl~~SalwtflwfvG------Fc~l~n------qwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~lA~ 167 (233)
T KOG4016|consen 100 DRKRAVLADLGVSALWAFLWFVG------FCFLAN------QWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVLAF 167 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHHHHH------HhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444433333333222 222221 3322110 1111134788999999999998888887765
Q ss_pred HHh
Q 028855 185 FSL 187 (202)
Q Consensus 185 ~~L 187 (202)
-|.
T Consensus 168 qR~ 170 (233)
T KOG4016|consen 168 QRY 170 (233)
T ss_pred HHH
Confidence 543
No 5
>PRK10591 hypothetical protein; Provisional
Probab=36.54 E-value=67 Score=23.88 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 028855 159 CNQVGEGIASALLVSISMVVLSCISAFSLFRLYGGSKAKNGA 200 (202)
Q Consensus 159 C~~~~~Sv~lsf~A~~~~~~~s~lSa~~L~~~~~~~~~~~~~ 200 (202)
-..-++++++-|++..++.-.++.-.||..+..+|+.+.+.+
T Consensus 39 l~~~~aai~mif~Gi~lmiPAav~ivWR~a~~lap~l~~~~~ 80 (92)
T PRK10591 39 LSTPTAAILMIFLGVLLMLPAAVVIIWRVAKGLAPQLMNRPP 80 (92)
T ss_pred ccCchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcHHhccCCc
Confidence 446789999999999999999999999999999887665543
No 6
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=34.07 E-value=1e+02 Score=23.21 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=35.8
Q ss_pred HHhCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028855 139 AKLGQPELQWLKICNMYGKFCNQVGEGIASALLVSISMVVLSCISAFSLF 188 (202)
Q Consensus 139 ~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsf~A~~~~~~~s~lSa~~L~ 188 (202)
.+.++.+--|.+-|+.-+-.-+.-.++.++=+++.+...+..+.-+|+.+
T Consensus 36 ~~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aC 85 (98)
T PF05702_consen 36 AREESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRAC 85 (98)
T ss_pred hHhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445799999988877777777777777777777776677777753
No 7
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=29.17 E-value=92 Score=19.94 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCC
Q 028855 175 SMVVLSCISAFSLFRLYGGSKAKNGAR 201 (202)
Q Consensus 175 ~~~~~s~lSa~~L~~~~~~~~~~~~~~ 201 (202)
...++..+.+|.+..-+|||.-...-|
T Consensus 11 i~~~lv~~Tgy~iYtaFGppSk~LrDP 37 (43)
T PF02468_consen 11 ISCLLVSITGYAIYTAFGPPSKELRDP 37 (43)
T ss_pred HHHHHHHHHhhhhhheeCCCccccCCc
Confidence 344555667789999999886654443
No 8
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=21.90 E-value=1.1e+02 Score=18.59 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhH
Q 028855 116 SGDQMMAYLTVAAVA 130 (202)
Q Consensus 116 ~~Dqv~ayLL~Saas 130 (202)
..||.++|+|+-++-
T Consensus 13 aiDqgiay~Lm~~Al 27 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL 27 (34)
T ss_pred hhhHHHHHHHHHHHH
Confidence 579999999987544
No 9
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=21.88 E-value=4.8e+02 Score=21.88 Aligned_cols=104 Identities=24% Similarity=0.232 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHhCCCcchhhhhhhhh
Q 028855 79 VANGIAAAYSLVQGVRCTVAMLKGSVLFNKPLAWAIFSGDQMMAYLTVAAVAAAAQSAV---FAKLGQPELQWLKICNMY 155 (202)
Q Consensus 79 ~an~I~~~Ysllql~~~~~~l~~~~~~~~~~~~~~~f~~Dqv~ayLL~SaasAA~av~~---l~~~G~~~~~W~~vC~~~ 155 (202)
++|+|...=.++.+.-.+..+.-.|-++++...|.++..-..-+ |+-.|++-+..++. +..+|. +-...|+.-
T Consensus 42 vsNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S~ln~-LlSaAc~vGL~~ai~~Tv~~~Gr---~Ll~~C~f~ 117 (188)
T PF12304_consen 42 VSNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVSLLNA-LLSAACAVGLLLAISLTVANQGR---NLLAGCNFT 117 (188)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCch---hHhhcCCCC
Confidence 57888888888888888877665555567778898887765443 44333333333221 223332 123444311
Q ss_pred hh-------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028855 156 GK-------------FCNQVGEGIASALLVSISMVVLSCISAFS 186 (202)
Q Consensus 156 ~~-------------FC~~~~~Sv~lsf~A~~~~~~~s~lSa~~ 186 (202)
+. -.+-.+.++++=+...+.-+.=+++|++-
T Consensus 118 ~~~~~~~it~dCPFDpTRIY~TtL~LW~ps~ll~~~EavfS~rC 161 (188)
T PF12304_consen 118 NLNALSSITNDCPFDPTRIYDTTLALWIPSILLSAVEAVFSVRC 161 (188)
T ss_pred ChhhccCCCCCCCCCcchHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 13445566666666666666667777664
No 10
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=21.43 E-value=2.2e+02 Score=21.34 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 028855 159 CNQVGEGIASALLVSISMVVLSCISAFSLFRLYGGSKAKN 198 (202)
Q Consensus 159 C~~~~~Sv~lsf~A~~~~~~~s~lSa~~L~~~~~~~~~~~ 198 (202)
-+.-.+++++-|++..++.-.++.-.||..+..+|+.+.+
T Consensus 39 l~~~~aai~MIf~Gi~lMlPAav~ivWR~a~~lap~l~~~ 78 (96)
T PF07214_consen 39 LSTPTAAIAMIFVGIGLMLPAAVNIVWRVAKGLAPLLIDR 78 (96)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhcC
Confidence 4467899999999999999999999999999888876543
Done!