Query 028855
Match_columns 202
No_of_seqs 106 out of 456
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 05:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028855.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028855hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 7.6 1.2E+02 0.0087 15.2 1.9 14 76-89 12-25 (29)
2 d1qtma1 c.55.3.5 (A:293-422) E 5.7 83 0.0061 21.6 0.8 23 5-27 72-101 (130)
3 d1ppje2 f.23.12.1 (E:1-69) Iro 3.5 4.1E+02 0.03 15.9 3.0 17 117-133 31-47 (69)
4 d1oedb_ f.36.1.1 (B:) Acetylch 3.0 6.1E+02 0.045 17.5 4.2 14 147-160 211-224 (250)
5 d1ansa_ g.11.1.1 (A:) Neurotox 2.9 2.5E+02 0.018 13.7 1.1 9 194-202 5-13 (27)
6 d1oede_ f.36.1.1 (E:) Acetylch 2.9 5.2E+02 0.038 18.1 3.6 15 146-160 220-234 (260)
7 d1rrza_ a.7.10.1 (A:) Glycogen 2.7 2.8E+02 0.02 16.5 1.3 15 151-165 45-59 (66)
8 d1rh5b_ f.23.28.1 (B:) Preprot 2.5 6.1E+02 0.044 14.5 3.3 18 166-183 35-52 (56)
9 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.4 6.2E+02 0.045 14.5 3.0 16 119-134 23-38 (56)
10 d1mmsa2 d.47.1.1 (A:8-70) Ribo 2.3 2.7E+02 0.02 16.5 0.9 17 138-157 21-37 (63)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.62 E-value=1.2e+02 Score=15.22 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 028855 76 FLVVANGIAAAYSL 89 (202)
Q Consensus 76 ylv~an~I~~~Ysl 89 (202)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36788888888854
No 2
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]}
Probab=5.67 E-value=83 Score=21.58 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=16.0
Q ss_pred CccccCCCCCccc-------Ccchhhhhhh
Q 028855 5 GVGVSPGNVPVYH-------GTVMKVVDRR 27 (202)
Q Consensus 5 ~~~~~~~~~p~~~-------~~~~~~~~~~ 27 (202)
|..+-||++|.+. |++++..-|+
T Consensus 72 G~~v~PgDDPmLlAYLlDPsNT~p~~varR 101 (130)
T d1qtma1 72 GLGLPPGDDPMLLAYLLDPSNTTPEGVARR 101 (130)
T ss_dssp TCCCCBCCCHHHHHHHHCTTCCSHHHHHHH
T ss_pred cccCCCCCchhHHHHhcCcCCCCcchhhHh
Confidence 6778999999886 4555554444
No 3
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.52 E-value=4.1e+02 Score=15.92 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhHHHH
Q 028855 117 GDQMMAYLTVAAVAAAA 133 (202)
Q Consensus 117 ~Dqv~ayLL~SaasAA~ 133 (202)
-.+.+.||+..+.+.+.
T Consensus 31 ~Rk~fsYl~~g~~~v~~ 47 (69)
T d1ppje2 31 ARKGFSYLVTATTTVGV 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhceehhhhhhhHHHHH
Confidence 34788998877766644
No 4
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.03 E-value=6.1e+02 Score=17.53 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=6.6
Q ss_pred hhhhhhhhhhhhhh
Q 028855 147 QWLKICNMYGKFCN 160 (202)
Q Consensus 147 ~W~~vC~~~~~FC~ 160 (202)
.|..+....|++|-
T Consensus 211 EW~~vA~VlDRlfl 224 (250)
T d1oedb_ 211 DWQYVAMVADRLFL 224 (250)
T ss_dssp -----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888888654
No 5
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=2.94 E-value=2.5e+02 Score=13.66 Aligned_cols=9 Identities=22% Similarity=0.472 Sum_probs=6.2
Q ss_pred CCCCCCCCC
Q 028855 194 SKAKNGARW 202 (202)
Q Consensus 194 ~~~~~~~~~ 202 (202)
|++.++|||
T Consensus 5 pcywggcpw 13 (27)
T d1ansa_ 5 PCYWGGCPW 13 (27)
T ss_dssp CSTTTTCSS
T ss_pred cccccCCcc
Confidence 566777776
No 6
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.93 E-value=5.2e+02 Score=18.09 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=7.0
Q ss_pred chhhhhhhhhhhhhh
Q 028855 146 LQWLKICNMYGKFCN 160 (202)
Q Consensus 146 ~~W~~vC~~~~~FC~ 160 (202)
..|..+-...|++|-
T Consensus 220 ~eW~~vA~viDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKVIDKACF 234 (260)
T ss_dssp ------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 358888888888774
No 7
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=2.66 E-value=2.8e+02 Score=16.54 Aligned_cols=15 Identities=27% Similarity=0.791 Sum_probs=11.8
Q ss_pred hhhhhhhhhhhHHHH
Q 028855 151 ICNMYGKFCNQVGEG 165 (202)
Q Consensus 151 vC~~~~~FC~~~~~S 165 (202)
.|..|.-||.++.-+
T Consensus 45 Fc~Ry~~Yc~q~~qa 59 (66)
T d1rrza_ 45 FCARYAWYCQQMMQA 59 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 688889999887643
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.47 E-value=6.1e+02 Score=14.52 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028855 166 IASALLVSISMVVLSCIS 183 (202)
Q Consensus 166 v~lsf~A~~~~~~~s~lS 183 (202)
++++|++|+..++...+.
T Consensus 35 ~i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 35 SLLGIIGYIIHVPATYIK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 346677777776666554
No 9
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.40 E-value=6.2e+02 Score=14.48 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhHHHHH
Q 028855 119 QMMAYLTVAAVAAAAQ 134 (202)
Q Consensus 119 qv~ayLL~SaasAA~a 134 (202)
+.+.|++..+.+...+
T Consensus 23 r~fsY~mvGs~g~~~a 38 (56)
T d3cx5e2 23 RSYAYFMVGAMGLLSS 38 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeehhHHHHH
Confidence 5677777766655443
No 10
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.29 E-value=2.7e+02 Score=16.51 Aligned_cols=17 Identities=12% Similarity=0.591 Sum_probs=10.0
Q ss_pred HHHhCCCcchhhhhhhhhhh
Q 028855 138 FAKLGQPELQWLKICNMYGK 157 (202)
Q Consensus 138 l~~~G~~~~~W~~vC~~~~~ 157 (202)
++.+| ++=+++|..|+.
T Consensus 21 LG~~G---iNi~~F~k~fN~ 37 (63)
T d1mmsa2 21 LGQHG---VNIMEFCKRFNA 37 (63)
T ss_dssp HHTTT---CCHHHHHHHHHH
T ss_pred hhhcC---cCHHHHHHHHHH
Confidence 44455 555777776653
Done!