Query 028856
Match_columns 202
No_of_seqs 106 out of 456
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 11.1 2.9E+02 0.01 17.6 3.7 28 68-95 26-53 (59)
2 2y69_J Cytochrome C oxidase po 7.5 3.6E+02 0.012 18.4 3.2 28 68-95 47-74 (80)
3 1jb0_X Photosystem I subunit P 6.4 3E+02 0.01 15.8 1.9 14 76-89 18-31 (35)
4 2lg4_A Aurelin; antimicrobial 7.2 1.4E+02 0.0049 17.8 0.0 14 149-162 9-22 (40)
5 1emz_A Envelope glycoprotein E 4.1 3.2E+02 0.011 14.8 0.9 15 134-152 9-23 (26)
6 3qoe_A Heterocyst differentiat 4.0 2.2E+02 0.0075 23.7 0.3 13 116-128 18-30 (302)
7 3ns4_A Vacuolar protein sortin 3.7 7.6E+02 0.026 20.7 3.4 21 155-175 24-44 (271)
8 1qfq_B N36, 36-MER N-terminal 3.4 4.7E+02 0.016 14.7 1.2 11 4-14 25-35 (35)
9 1eci_A Ectatomin; pore-forming 3.1 2.9E+02 0.01 15.8 0.2 10 147-156 7-16 (37)
10 1fdm_A FD coat protein, FD maj 3.0 1.1E+03 0.036 14.6 2.9 11 184-194 38-48 (50)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=11.07 E-value=2.9e+02 Score=17.65 Aligned_cols=28 Identities=18% Similarity=-0.146 Sum_probs=22.3
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHH
Q 028856 68 FTDMKALVFLVVANGIAAAYSLVQGVRC 95 (202)
Q Consensus 68 fs~~~af~ylv~an~I~~~Ysllql~~~ 95 (202)
=+|.--|++.++..+++.+|++.++...
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999998887753
No 2
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.48 E-value=3.6e+02 Score=18.39 Aligned_cols=28 Identities=18% Similarity=-0.146 Sum_probs=22.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHH
Q 028856 68 FTDMKALVFLVVANGIAAAYSLVQGVRC 95 (202)
Q Consensus 68 fs~~~af~ylv~an~I~~~Ysllql~~~ 95 (202)
=+|.--|.+.++..+++.+|++.++...
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999998887753
No 3
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=6.39 E-value=3e+02 Score=15.84 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 028856 76 FLVVANGIAAAYSL 89 (202)
Q Consensus 76 ylv~an~I~~~Ysl 89 (202)
.++++|-++++|=+
T Consensus 18 llLaINflVAayYF 31 (35)
T 1jb0_X 18 LLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67889999988743
No 4
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=7.24 E-value=1.4e+02 Score=17.84 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.4
Q ss_pred hhhhhhhhhhhhhH
Q 028856 149 LKICNMYGKFCNQV 162 (202)
Q Consensus 149 ~~vC~~~~~FC~~~ 162 (202)
+.+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 35799999999876
No 5
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.05 E-value=3.2e+02 Score=14.75 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=8.1
Q ss_pred HHHHHHHhCCCcchhhhhh
Q 028856 134 QSAVFAKLGQPELQWLKIC 152 (202)
Q Consensus 134 av~~l~~~G~~~~~W~~vC 152 (202)
+++|....| +|-|++
T Consensus 9 glayfsm~g----nWaKVl 23 (26)
T 1emz_A 9 GIAYFSMVG----NWAKXX 23 (26)
T ss_dssp HHHHHHHHH----HHHC--
T ss_pred HHHHHHHhh----HHhhhc
Confidence 466666654 577765
No 6
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.01 E-value=2.2e+02 Score=23.74 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 028856 116 SGDQMMAYLTVAA 128 (202)
Q Consensus 116 ~~Dqv~ayLL~Sa 128 (202)
..||++.||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999886
No 7
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=3.69 E-value=7.6e+02 Score=20.68 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 028856 155 YGKFCNQVGEGIASALLVSIS 175 (202)
Q Consensus 155 ~~~FC~~~~~Sv~lsf~A~~~ 175 (202)
+..||++...+++-.|+.-+.
T Consensus 24 ~rnFcDK~ve~~~~~Fi~~Ii 44 (271)
T 3ns4_A 24 KWNFLDKVIDIMTTNFVSNTI 44 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999998874
No 8
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=3.39 E-value=4.7e+02 Score=14.74 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=7.3
Q ss_pred CCccccCCCCC
Q 028856 4 LGVGVSPGNVP 14 (202)
Q Consensus 4 ~~~~~~~~~~p 14 (202)
.|+..+|-+.|
T Consensus 25 vgvsakp~nrp 35 (35)
T 1qfq_B 25 VGVSAKPVNRP 35 (35)
T ss_dssp SSSSCCCCSCC
T ss_pred eeecccCCCCC
Confidence 46666777665
No 9
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=3.13 E-value=2.9e+02 Score=15.85 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=6.8
Q ss_pred hhhhhhhhhh
Q 028856 147 QWLKICNMYG 156 (202)
Q Consensus 147 ~W~~vC~~~~ 156 (202)
.|..+|....
T Consensus 7 iweticpt~~ 16 (37)
T 1eci_A 7 IWETVCPTVE 16 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhCcchH
Confidence 4777886554
No 10
>1fdm_A FD coat protein, FD major coat protein; membrane protein, micelles, viral protein; NMR {Enterobacteria phage FD} SCOP: h.1.4.1 PDB: 1ifd_A 1ifi_A 1ifj_A 1mzt_A 2hi5_A 2cpb_A 2cps_A
Probab=2.97 E-value=1.1e+03 Score=14.64 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=8.0
Q ss_pred HHHhhhhcCCC
Q 028856 184 AFSLFRLYGGS 194 (202)
Q Consensus 184 a~~L~~~~~~~ 194 (202)
+.+|||++.++
T Consensus 38 gIklfKKf~sK 48 (50)
T 1fdm_A 38 GIKLFKKFTSK 48 (50)
T ss_dssp HHHHHHTTTTT
T ss_pred hhhhhhhcccc
Confidence 45888888765
Done!