Query 028857
Match_columns 202
No_of_seqs 231 out of 2314
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0m_A Peptide methionine sulf 100.0 5.4E-53 1.8E-57 377.7 11.3 149 47-200 89-247 (313)
2 3e0o_A Peptide methionine sulf 100.0 3.3E-38 1.1E-42 255.7 6.1 77 124-200 3-79 (144)
3 3cxk_A Methionine-R-sulfoxide 100.0 2.3E-37 8E-42 255.2 7.7 80 121-200 31-111 (164)
4 3hcg_A Peptide methionine sulf 100.0 9.3E-38 3.2E-42 253.7 4.8 77 124-200 4-81 (146)
5 2k8d_A Peptide methionine sulf 100.0 9.5E-38 3.2E-42 254.8 4.2 80 121-200 19-99 (151)
6 3hcj_A MSRB, peptide methionin 100.0 3.3E-36 1.1E-40 246.2 5.9 75 126-200 13-88 (154)
7 2l1u_A MSRB2, methionine-R-sul 100.0 7.9E-37 2.7E-41 247.5 1.3 74 128-201 2-83 (143)
8 2kv1_A Methionine-R-sulfoxide 99.9 8.7E-24 3E-28 167.6 5.3 51 150-200 6-58 (124)
9 2kao_A Methionine-R-sulfoxide 99.9 4E-23 1.4E-27 163.8 6.3 50 151-200 7-58 (124)
10 3mao_A Methionine-R-sulfoxide 99.9 1.2E-22 4E-27 157.2 2.5 48 153-200 3-51 (105)
11 1nwa_A Peptide methionine sulf 99.7 2.2E-18 7.6E-23 146.4 6.8 88 47-138 110-201 (203)
12 4gwb_A Peptide methionine sulf 99.6 2.3E-16 8E-21 130.6 7.0 64 46-112 86-152 (168)
13 3bqh_A PILB, peptide methionin 99.6 6.4E-16 2.2E-20 130.4 7.0 66 46-116 90-158 (193)
14 3pim_A Peptide methionine sulf 99.6 8.2E-16 2.8E-20 129.2 5.1 62 46-112 115-179 (187)
15 1ff3_A Peptide methionine sulf 99.5 1E-14 3.5E-19 124.5 4.9 65 47-114 131-201 (211)
16 1fvg_A Peptide methionine sulf 99.5 1.9E-14 6.5E-19 121.9 3.2 62 47-111 132-198 (199)
17 2j89_A Methionine sulfoxide re 99.4 1E-13 3.5E-18 121.4 6.5 60 47-111 183-245 (261)
18 1pft_A TFIIB, PFTFIIBN; N-term 85.2 0.9 3.1E-05 29.3 3.6 32 158-191 19-50 (50)
19 1dl6_A Transcription factor II 82.7 0.8 2.7E-05 31.0 2.6 33 157-191 24-56 (58)
20 3k7a_M Transcription initiatio 60.9 5 0.00017 35.2 2.9 40 150-191 25-68 (345)
21 2znx_A SCFV; fluorotryptohpan, 44.5 8 0.00027 30.2 1.4 21 158-178 209-229 (242)
22 3tf7_C 42F3 MUT7 SCFV (42F3 al 36.1 8 0.00027 30.5 0.1 22 158-179 219-243 (256)
23 1sjv_A R9; camelids antibody, 33.2 23 0.00077 24.6 2.2 13 158-170 87-99 (114)
24 3k1f_M Transcription initiatio 31.5 4 0.00014 34.3 -2.4 32 159-192 38-69 (197)
25 1vq8_1 50S ribosomal protein L 30.2 17 0.00057 25.0 0.9 28 161-188 15-43 (57)
26 3uzq_A Anti-dengue MAB 4E11; d 30.1 19 0.00063 28.1 1.4 21 158-178 216-238 (253)
27 1qfw_M FV, antibody (anti beta 29.4 25 0.00087 24.1 1.9 14 157-170 79-92 (108)
28 4a18_A RPL37, ribosomal protei 29.4 15 0.00051 27.5 0.6 27 162-188 15-41 (94)
29 3j21_e 50S ribosomal protein L 29.0 20 0.0007 24.9 1.2 26 163-188 17-43 (62)
30 2atp_B T-cell surface glycopro 28.5 15 0.00052 25.5 0.5 13 158-170 88-100 (115)
31 1jhl_L IGG1-kappa D11.15 FV (l 28.3 27 0.00093 23.8 1.9 15 157-171 79-93 (108)
32 3omz_A Human vdelta1 gamma del 27.8 16 0.00055 28.6 0.6 11 158-168 218-228 (259)
33 1tvd_A T cell receptor, ES204 27.5 16 0.00055 25.4 0.5 13 158-170 85-97 (116)
34 3iz5_l 60S ribosomal protein L 26.5 15 0.0005 27.6 0.2 27 162-188 15-41 (94)
35 2q20_A VK1 O18/O8 germline lig 25.6 33 0.0011 23.6 1.9 13 158-170 82-94 (109)
36 2zkr_2 60S ribosomal protein L 25.3 67 0.0023 24.1 3.6 34 159-192 12-45 (97)
37 1eeq_A Kappa-4 immunoglobulin 24.4 23 0.00077 24.6 0.8 12 158-169 86-97 (114)
38 2lo3_A SAGA-associated factor 24.1 20 0.00067 23.4 0.4 18 159-176 13-30 (44)
39 2z35_A T-cell receptor alpha-c 23.6 28 0.00095 24.1 1.2 13 157-169 80-92 (112)
40 3gkz_A Anti-methamphetamine si 22.3 26 0.00087 27.3 0.8 21 158-178 221-243 (257)
41 1e8j_A Rubredoxin; iron-sulfur 22.2 45 0.0015 21.9 1.9 10 163-172 3-12 (52)
42 2cpc_A KIAA0657 protein; immun 22.2 44 0.0015 22.5 2.0 14 157-170 76-89 (113)
43 2i24_N NEW antigen receptor PB 21.7 21 0.00072 25.8 0.2 12 158-169 75-86 (121)
44 1twf_L ABC10-alpha, DNA-direct 21.1 59 0.002 22.7 2.4 55 136-192 3-59 (70)
45 2yz1_A Tyrosine-protein phosph 20.9 25 0.00086 24.4 0.5 13 158-170 87-99 (120)
46 1i3g_L Antibody FV fragment; a 20.2 33 0.0011 23.7 1.0 13 158-170 83-95 (111)
47 1gl4_B Basement membrane-speci 20.1 35 0.0012 22.5 1.1 14 158-171 71-84 (98)
48 2oyp_A Hepatitis A virus cellu 20.0 51 0.0017 21.8 1.9 15 158-172 81-95 (109)
No 1
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.4e-53 Score=377.74 Aligned_cols=149 Identities=24% Similarity=0.332 Sum_probs=135.1
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeecc---CCC
Q 028857 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVA---SGP 120 (202)
Q Consensus 47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaa---p~~ 120 (202)
-.||.|+|||+|++|+++|++++++++. .+.+|| ||| |+|+.+||+||+||| .|||.+|+.+.... +..
T Consensus 89 G~QYRS~Ify~~~~Q~~~a~~~~~~~~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc~~~~~~~~~~~~ 163 (313)
T 3e0m_A 89 GRQYRTGIYYQDEADLPAIYTVVQEQER--MLGRKI-AVE--VEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLI 163 (313)
T ss_dssp SGGGCCEEEESCGGGHHHHHHHHHHHHH--HHSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTCCCCSCGGGGTSCCC
T ss_pred ccccceeEecCCHHHHHHHHHHHHHHHH--hcCCCe-EEE--EeeccceeEcHHHHHHHHHHCCCcceeeecccchhhhh
Confidence 4699999999999999999999999987 468899 999 999999999999999 89999888776543 111
Q ss_pred C---CCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCC
Q 028857 121 A---SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGA 196 (202)
Q Consensus 121 ~---~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~a 196 (202)
. -..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++
T Consensus 164 ~~~~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~ 243 (313)
T 3e0m_A 164 DAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKEL 243 (313)
T ss_dssp CGGGGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGG
T ss_pred cccccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCc
Confidence 1 244699999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred ccee
Q 028857 197 INCS 200 (202)
Q Consensus 197 V~~~ 200 (202)
|.++
T Consensus 244 v~~~ 247 (313)
T 3e0m_A 244 IHYY 247 (313)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 8764
No 2
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=3.3e-38 Score=255.74 Aligned_cols=77 Identities=34% Similarity=0.583 Sum_probs=74.0
Q ss_pred CCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccCCccee
Q 028857 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCS 200 (202)
Q Consensus 124 ~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~aV~~~ 200 (202)
.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|.++
T Consensus 3 ~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~ 79 (144)
T 3e0o_A 3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEK 79 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEE
T ss_pred CCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999999999998888765
No 3
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=2.3e-37 Score=255.22 Aligned_cols=80 Identities=39% Similarity=0.811 Sum_probs=75.6
Q ss_pred CCCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCcccc-CCcce
Q 028857 121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC 199 (202)
Q Consensus 121 ~~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~-~aV~~ 199 (202)
..+.++++|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus 31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~ 110 (164)
T 3cxk_A 31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE 110 (164)
T ss_dssp CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999995 47876
Q ss_pred e
Q 028857 200 S 200 (202)
Q Consensus 200 ~ 200 (202)
+
T Consensus 111 ~ 111 (164)
T 3cxk_A 111 K 111 (164)
T ss_dssp E
T ss_pred e
Confidence 5
No 4
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=9.3e-38 Score=253.70 Aligned_cols=77 Identities=36% Similarity=0.742 Sum_probs=73.7
Q ss_pred CCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS 200 (202)
Q Consensus 124 ~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~ 200 (202)
.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus 4 ~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~ 81 (146)
T 3hcg_A 4 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH 81 (146)
T ss_dssp CCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEE
T ss_pred CCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEe
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999 5788764
No 5
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=9.5e-38 Score=254.76 Aligned_cols=80 Identities=46% Similarity=0.958 Sum_probs=75.5
Q ss_pred CCCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCcccc-CCcce
Q 028857 121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC 199 (202)
Q Consensus 121 ~~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~-~aV~~ 199 (202)
..+.++++|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus 19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~ 98 (151)
T 2k8d_A 19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL 98 (151)
T ss_dssp ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999995 58876
Q ss_pred e
Q 028857 200 S 200 (202)
Q Consensus 200 ~ 200 (202)
+
T Consensus 99 ~ 99 (151)
T 2k8d_A 99 R 99 (151)
T ss_dssp C
T ss_pred e
Confidence 5
No 6
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=3.3e-36 Score=246.23 Aligned_cols=75 Identities=36% Similarity=0.721 Sum_probs=71.2
Q ss_pred CHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS 200 (202)
Q Consensus 126 sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~ 200 (202)
..++||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus 13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~ 88 (154)
T 3hcj_A 13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREI 88 (154)
T ss_dssp HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEE
T ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999 5788765
No 7
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=7.9e-37 Score=247.52 Aligned_cols=74 Identities=41% Similarity=0.834 Sum_probs=71.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc--------cCCcce
Q 028857 128 EEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL--------PGAINC 199 (202)
Q Consensus 128 ~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i--------~~aV~~ 199 (202)
+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.+
T Consensus 2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~ 81 (143)
T 2l1u_A 2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR 81 (143)
T ss_dssp CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999 789877
Q ss_pred ee
Q 028857 200 SM 201 (202)
Q Consensus 200 ~~ 201 (202)
+.
T Consensus 82 ~~ 83 (143)
T 2l1u_A 82 RL 83 (143)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=99.88 E-value=8.7e-24 Score=167.62 Aligned_cols=51 Identities=35% Similarity=0.808 Sum_probs=46.9
Q ss_pred CCCCC-CCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857 150 PGTGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS 200 (202)
Q Consensus 150 pfsg~-y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~ 200 (202)
+|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus 6 ~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~ 58 (124)
T 2kv1_A 6 FFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKC 58 (124)
T ss_dssp CCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEE
T ss_pred CccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEE
Confidence 79999 788899999999999999999999999999999999999 5677543
No 9
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=99.88 E-value=4e-23 Score=163.84 Aligned_cols=50 Identities=36% Similarity=0.849 Sum_probs=46.0
Q ss_pred CCCC-CCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857 151 GTGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS 200 (202)
Q Consensus 151 fsg~-y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~ 200 (202)
|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus 7 ~~ge~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~pi~~~~v~~~ 58 (124)
T 2kao_A 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKC 58 (124)
T ss_dssp CCSCTTTTCCCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCCCCCSSCEEE
T ss_pred cccccccCCCCCEEEEeCCCCCccccCcccccCCCCChhhCccCCccceEEE
Confidence 4777 889999999999999999999999999999999999999 4788764
No 10
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=99.85 E-value=1.2e-22 Score=157.21 Aligned_cols=48 Identities=33% Similarity=0.824 Sum_probs=44.5
Q ss_pred CCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857 153 GEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS 200 (202)
Q Consensus 153 g~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~ 200 (202)
-+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus 3 e~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~ 51 (105)
T 3mao_A 3 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKR 51 (105)
T ss_dssp CCCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEE
T ss_pred ccccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEE
Confidence 37999999999999999999999999999999999999999 4688764
No 11
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=99.73 E-value=2.2e-18 Score=146.41 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=64.8
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeeccCCCCCC
Q 028857 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGPASV 123 (202)
Q Consensus 47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaap~~~~~ 123 (202)
-.||-|+|||+|++|+++|+++++++++++.+.+|| ||| |+|+.+||+||+||| .|||.+|++ ....|+....
T Consensus 110 GtQYRSaIfy~~~eQ~~~A~~~~~~lq~~g~~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Y~c-~~~~~~~~k~ 185 (203)
T 1nwa_A 110 GTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV-VTE--VSPAGDFWEAEPEHQDYLQRYPNGYTC-HFVRPGWRLP 185 (203)
T ss_dssp SGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC-CCCCTTSCCS
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEE--EecCCCEEEChHHHHHHHHhCCCCCcc-cccHHHHHhh
Confidence 469999999999999999999999999876688999 999 999999999999999 899999733 4455665555
Q ss_pred CCC-HHHHHhcCCHHH
Q 028857 124 NKS-EEEWRAILSPEQ 138 (202)
Q Consensus 124 ~~s-d~ewr~~Lt~~q 138 (202)
.+. +.+||..|||+.
T Consensus 186 ~~~a~~~~~~~~~~~~ 201 (203)
T 1nwa_A 186 RRTAESALRASLSPEL 201 (203)
T ss_dssp CC--------------
T ss_pred hhhhhhhhhhhcCccc
Confidence 554 445999999973
No 12
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=99.64 E-value=2.3e-16 Score=130.58 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=58.8
Q ss_pred cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcc
Q 028857 46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV 112 (202)
Q Consensus 46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~v 112 (202)
.-.||.|+|||+|++|+++|++++++++.++.+.++| ||| |+|+.+||+||+||| +|||.+|++
T Consensus 86 ~G~QYRS~If~~~~~Q~~~a~~~~~~l~~~~~~~~~I-vTe--i~p~~~Fy~AE~yHQ~Yl~knP~~y~C 152 (168)
T 4gwb_A 86 IGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV-VTE--VEPVRDFWEAEPEHQNYLERYPNGYTC 152 (168)
T ss_dssp ESGGGCEEEEESSHHHHHHHHHHHHHHHHHTCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC
T ss_pred CCcCceEEEecCCHHHHHHHHHHHHHHHHcccCCCCE-EEE--EEecCCeeECHHHHHHHHHhCCCCCcc
Confidence 3469999999999999999999999998877788999 999 999999999999999 999998854
No 13
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=99.61 E-value=6.4e-16 Score=130.40 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=57.8
Q ss_pred cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeec
Q 028857 46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAV 116 (202)
Q Consensus 46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAa 116 (202)
--.||.|+|||+|++|+++|+++++.++.. +.+|| ||| |+|+.+||+||+||| .|||.+|+.+...
T Consensus 90 ~G~QYRS~If~~~~~Q~~~A~~~~~~~~~~--~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knp~~Yc~~~~~ 158 (193)
T 3bqh_A 90 TGTQYRSGVYYTDPAEKAVIAAALKREQQK--YQLPL-VVE--NEPLKNFYDAEEYHQDYLIKNPNGYCHIDIR 158 (193)
T ss_dssp TTCTTCEEEEESSHHHHHHHHHHHHHHHTT--CSSCB-CCE--EEECCCEEECCGGGTTHHHHCTTCCC---CC
T ss_pred cCccceeeeecCCHHHHHHHHHHHHHHHHH--hCCCe-EEE--EecCCCeeEcHHHHHHHHHhCCCCceeeecc
Confidence 457999999999999999999999999873 78899 999 999999999999999 8999988876543
No 14
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=99.58 E-value=8.2e-16 Score=129.22 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=57.0
Q ss_pred cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcc
Q 028857 46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV 112 (202)
Q Consensus 46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~v 112 (202)
--.||.|+|||+|++|+++|++++++++. .+.+|| ||| |+|+..||+||+||| +|||.+|++
T Consensus 115 ~G~QYRS~Ify~~~~Q~~~A~~~~~~l~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Ycc 179 (187)
T 3pim_A 115 KGTQYRSGLFAHSDADLKELAKIKEEWQP--KWGNKI-ATV--IEPIKNFYDAEEYHQLYLDKNPQGYAC 179 (187)
T ss_dssp -CGGGCCEEEESSHHHHHHHHHHHHHHGG--GGTTCB-CCE--EEEEEEEEEHHHHHHHHCTTCTTCTTC
T ss_pred cCcccceeeEeCCHHHHHHHHHHHHHHHH--HhCCCc-EEE--EeeCCCeeecHHHHHHHHHHCCCCCCC
Confidence 34799999999999999999999999987 468899 999 999999999999999 999998876
No 15
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=99.50 E-value=1e-14 Score=124.52 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=56.4
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccC---CCCCCCeeeeccceeeccCceechhhhc---cccCcCCccee
Q 028857 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPS---LLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVL 114 (202)
Q Consensus 47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~---~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVl 114 (202)
-.||-|+|||+|++|+++|+++++.+++. ..+++|| ||| |+|+..||+||+||| .|||.+|+.+.
T Consensus 131 GtQYRSaIf~~~~eQ~~~A~~~~~~~q~~l~~~g~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Yc~~~ 201 (211)
T 1ff3_A 131 GTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHI-TTE--IANATPFYYAEDDHQQYLHKNPYGYCGIG 201 (211)
T ss_dssp SGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCE--ECCCCCEEECCGGGTTHHHHSCCCCCCCC
T ss_pred CccceeeeecCCHHHHHHHHHHHHHHHHHHhhcccCCce-EEE--EeeCCCceeChHHHHHHHHHCCCCCcCcC
Confidence 46999999999999999999999877653 1256799 999 999999999999999 89999877643
No 16
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=99.46 E-value=1.9e-14 Score=121.95 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=53.3
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCC--CCCCeeeeccceeeccCceechhhhc---cccCcCCc
Q 028857 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLL--KLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG 111 (202)
Q Consensus 47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~--~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~ 111 (202)
-.||.|+|||+|++|+++|+++++.+++... ..++| ||| |+|+..||+||+||| .|||.+|+
T Consensus 132 G~QYRS~If~~~~~Q~~~A~~~~~~~q~~~~~~g~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc 198 (199)
T 1fvg_A 132 GSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLI-TTD--IREGQTFYYAEDYHQQYLSKDPDGYC 198 (199)
T ss_dssp SGGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCC-CCE--ECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred ChhheeccccCCHHHHHHHHHHHHHHHHHHhhcCCCCe-EEE--EeeCCCeeECHHHHHHHHHhCCCCCC
Confidence 4699999999999999999999988765310 02589 999 999999999999999 89999765
No 17
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=99.43 E-value=1e-13 Score=121.39 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=55.2
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCc
Q 028857 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG 111 (202)
Q Consensus 47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~ 111 (202)
-.||-++|||+|++|+++|+++++++++. +.++| ||| |+|+.+||+||+||| .|||..++
T Consensus 183 GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~--~~~~I-vTE--I~p~~~Fy~AEdYHQ~Yl~Kn~~~gy 245 (261)
T 2j89_A 183 GTQYRSGIYYYTPEQEKAAKESLERQQKL--LNRKI-VTE--ILPAKKFYRAEEYHQQYLAKGGRFGF 245 (261)
T ss_dssp SGGGCEEEEESSHHHHHHHHHHHHHHHTT--CSSCC-CCE--EEECCCEEECCGGGTTTTTTTTTTSC
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHh--cCCCc-EEE--EecCCCeeECHHHHHHHHHHCCCCCC
Confidence 46999999999999999999999999874 67899 999 999999999999999 89998665
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=85.18 E-value=0.9 Score=29.25 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=26.3
Q ss_pred CCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCc
Q 028857 158 HFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191 (202)
Q Consensus 158 ~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~ 191 (202)
..+.|..+|..||..+ .+.-.|.|.-|.+|..
T Consensus 19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~ 50 (50)
T 1pft_A 19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA 50 (50)
T ss_dssp ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence 3468999999999887 4566899999999963
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=82.74 E-value=0.8 Score=31.01 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=28.0
Q ss_pred CCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCc
Q 028857 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191 (202)
Q Consensus 157 ~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~ 191 (202)
...+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 24 ~D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 24 EDYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN 56 (58)
T ss_dssp ECSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred EeCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence 34578999999999887 5677999999999975
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=60.88 E-value=5 Score=35.21 Aligned_cols=40 Identities=28% Similarity=0.537 Sum_probs=30.0
Q ss_pred CCCCC----CCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCc
Q 028857 150 PGTGE----YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191 (202)
Q Consensus 150 pfsg~----y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~ 191 (202)
|.+|. .......|.++|..||.-| .+.-.|.|.-|-+|..
T Consensus 25 p~Cg~~~~~iv~D~~~G~~vC~~CG~Vl--~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 25 PECKVYPPKIVERFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (345)
T ss_dssp STTCCSCCCCCCCSSSCSCCCSSSCCCC--CCCCCCTTCCCCCC--
T ss_pred cCCCCCCCceEEECCCCCEecCCCCeEc--ccccccCCcccccccc
Confidence 55554 3334579999999999988 6677899999999974
No 21
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=44.47 E-value=8 Score=30.24 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=15.6
Q ss_pred CCCCeEEEeccCCCCCCCCCC
Q 028857 158 HFEEGIYNCSACGTPLYKSTT 178 (202)
Q Consensus 158 ~~~~G~Y~C~~C~~pLF~S~~ 178 (202)
..+.|+|.|.+.+..+|...+
T Consensus 209 ~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 209 TEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp GGGCEEEEEEETTSSCBCCCE
T ss_pred cCcCEEEEEeccCCcccCCCe
Confidence 358999999998765665443
No 22
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=36.08 E-value=8 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=16.6
Q ss_pred CCCCeEEEecc---CCCCCCCCCCC
Q 028857 158 HFEEGIYNCSA---CGTPLYKSTTK 179 (202)
Q Consensus 158 ~~~~G~Y~C~~---C~~pLF~S~~K 179 (202)
..+.|+|.|++ ||..+|...+|
T Consensus 219 ~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp GGGCEEEEEEEEEETTEEEECCCEE
T ss_pred HHHCEEEEEEecCCCCccEECCCeE
Confidence 36899999987 67777766554
No 23
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=33.24 E-value=23 Score=24.62 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.3
Q ss_pred CCCCeEEEeccCC
Q 028857 158 HFEEGIYNCSACG 170 (202)
Q Consensus 158 ~~~~G~Y~C~~C~ 170 (202)
..+.|+|.|+.-.
T Consensus 87 ~~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 87 PEDTAVYYCYTHY 99 (114)
T ss_dssp GGGCSEEEEEECC
T ss_pred HHHCEEEEEeEEc
Confidence 3589999998754
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=31.54 E-value=4 Score=34.27 Aligned_cols=32 Identities=31% Similarity=0.647 Sum_probs=27.6
Q ss_pred CCCeEEEeccCCCCCCCCCCCCCCCCCCccCCcc
Q 028857 159 FEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEG 192 (202)
Q Consensus 159 ~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~ 192 (202)
.+.|-++|..||.-| .+.-.|.|.-|.+|...
T Consensus 38 ~erGE~VCsdCGLVL--EEriID~GPEWRAFsnD 69 (197)
T 3k1f_M 38 FSEGDVVCALCGLVL--SDKLVDTRSEWRTFSNX 69 (197)
T ss_dssp GGGTEEEETTTCBBC--CCCCBCHHHHHHHHHCC
T ss_pred CCCCEEEEcCCCCCc--CCceeECCCCCcCcCCc
Confidence 578999999999887 66778999999999853
No 25
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=30.20 E-value=17 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.689 Sum_probs=24.6
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCC-cc
Q 028857 161 EGIYNCSACGTPLYKSTTKFNSGCGW-PA 188 (202)
Q Consensus 161 ~G~Y~C~~C~~pLF~S~~KFdSg~GW-PS 188 (202)
.=.=.|..||..-|.-..+.=+.||+ ||
T Consensus 15 ktH~~CrRCG~~syH~qK~~Ca~CGygpa 43 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYHTKKKVCSSCGFGKS 43 (57)
T ss_dssp CCEEECTTTCSEEEETTTTEETTTCTTTC
T ss_pred CccccccccCChhhhccccccccccCCch
Confidence 44568999999999999999999999 87
No 26
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=30.07 E-value=19 Score=28.12 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=14.4
Q ss_pred CCCCeEEEecc--CCCCCCCCCC
Q 028857 158 HFEEGIYNCSA--CGTPLYKSTT 178 (202)
Q Consensus 158 ~~~~G~Y~C~~--C~~pLF~S~~ 178 (202)
..+.|+|.|++ |+..+|...+
T Consensus 216 ~~DsG~Y~C~~~n~~~~~fg~gt 238 (253)
T 3uzq_A 216 ADDVATYFCQRSNEVPWTFGGGT 238 (253)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCE
T ss_pred HHHCEEEEEEEccCCCcEECCCE
Confidence 45899999987 4445555443
No 27
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=29.42 E-value=25 Score=24.11 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=10.8
Q ss_pred CCCCCeEEEeccCC
Q 028857 157 KHFEEGIYNCSACG 170 (202)
Q Consensus 157 ~~~~~G~Y~C~~C~ 170 (202)
...+.|+|.|++-.
T Consensus 79 ~~~DsG~Y~C~~~~ 92 (108)
T 1qfw_M 79 QAEDFADYHCGQTY 92 (108)
T ss_dssp CTTCCSEEEEEECS
T ss_pred ChhhCEEEEEEEcc
Confidence 34689999998754
No 28
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=29.38 E-value=15 Score=27.54 Aligned_cols=27 Identities=26% Similarity=0.646 Sum_probs=23.7
Q ss_pred eEEEeccCCCCCCCCCCCCCCCCCCcc
Q 028857 162 GIYNCSACGTPLYKSTTKFNSGCGWPA 188 (202)
Q Consensus 162 G~Y~C~~C~~pLF~S~~KFdSg~GWPS 188 (202)
=.-.|..||.--|.-..+.-+.||+||
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 4a18_A 15 THTLCRRCGKATYHKQKLRCAACGYPD 41 (94)
T ss_dssp CEEECTTTCSEEEETTTTEESSSCGGG
T ss_pred ccceecCcCchhhhhccccccccCCcH
Confidence 466899999999999999999999985
No 29
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.96 E-value=20 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.713 Sum_probs=22.9
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCC-cc
Q 028857 163 IYNCSACGTPLYKSTTKFNSGCGW-PA 188 (202)
Q Consensus 163 ~Y~C~~C~~pLF~S~~KFdSg~GW-PS 188 (202)
.=.|..||.--|.-..+.-+.||+ ||
T Consensus 17 H~lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 17 HIRCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp CCBCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eeeecccCcchhccccccccccCCchh
Confidence 346999999999999999999999 75
No 30
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=28.46 E-value=15 Score=25.54 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.3
Q ss_pred CCCCeEEEeccCC
Q 028857 158 HFEEGIYNCSACG 170 (202)
Q Consensus 158 ~~~~G~Y~C~~C~ 170 (202)
..+.|+|.|+.-.
T Consensus 88 ~~DsG~Y~C~~~~ 100 (115)
T 2atp_B 88 PEDSDFYFCATVG 100 (115)
T ss_dssp GGGCEEEEEEEEC
T ss_pred HHHCEEEEEeEcc
Confidence 4589999998753
No 31
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=28.33 E-value=27 Score=23.79 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=11.3
Q ss_pred CCCCCeEEEeccCCC
Q 028857 157 KHFEEGIYNCSACGT 171 (202)
Q Consensus 157 ~~~~~G~Y~C~~C~~ 171 (202)
...+.|+|.|++-+.
T Consensus 79 ~~~DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 79 EPEDFAMYICQQHNE 93 (108)
T ss_dssp CTTCCSEEEEEECSS
T ss_pred CHHHCEEEEEEEccC
Confidence 346899999987653
No 32
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=27.77 E-value=16 Score=28.60 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=9.3
Q ss_pred CCCCeEEEecc
Q 028857 158 HFEEGIYNCSA 168 (202)
Q Consensus 158 ~~~~G~Y~C~~ 168 (202)
..+.|+|.|++
T Consensus 218 ~~DsG~Y~C~~ 228 (259)
T 3omz_A 218 LEDSAKYFCAL 228 (259)
T ss_dssp GGGCSEEEEEE
T ss_pred hhHCEEEEEEE
Confidence 35899999987
No 33
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=27.51 E-value=16 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.1
Q ss_pred CCCCeEEEeccCC
Q 028857 158 HFEEGIYNCSACG 170 (202)
Q Consensus 158 ~~~~G~Y~C~~C~ 170 (202)
..+.|+|.|+.-.
T Consensus 85 ~~DsG~Y~C~~~~ 97 (116)
T 1tvd_A 85 TEDSATYYCAFTL 97 (116)
T ss_dssp GGGCEEEEEEEEC
T ss_pred hHHCEEEEEEEeC
Confidence 4589999998743
No 34
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=26.49 E-value=15 Score=27.58 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=24.0
Q ss_pred eEEEeccCCCCCCCCCCCCCCCCCCcc
Q 028857 162 GIYNCSACGTPLYKSTTKFNSGCGWPA 188 (202)
Q Consensus 162 G~Y~C~~C~~pLF~S~~KFdSg~GWPS 188 (202)
=.-.|..||.--|.-..+.-+.||+||
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 15 THTLCVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp SEEECTTTCSEEEEGGGTEETTTCSSC
T ss_pred ccceecCcCchhhhcccccccccCCch
Confidence 356899999999999999999999996
No 35
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=25.55 E-value=33 Score=23.56 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=10.1
Q ss_pred CCCCeEEEeccCC
Q 028857 158 HFEEGIYNCSACG 170 (202)
Q Consensus 158 ~~~~G~Y~C~~C~ 170 (202)
..+.|+|.|++-.
T Consensus 82 ~~DsG~Y~C~~~~ 94 (109)
T 2q20_A 82 PEDIATYYCQQYD 94 (109)
T ss_dssp GGGCEEEEEEECS
T ss_pred hhhCEEEEEEEee
Confidence 3589999998743
No 36
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=25.27 E-value=67 Score=24.07 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=26.4
Q ss_pred CCCeEEEeccCCCCCCCCCCCCCCCCCCccCCcc
Q 028857 159 FEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEG 192 (202)
Q Consensus 159 ~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~ 192 (202)
...-.-.|..||..-|.=+-+.=..||+|++-.-
T Consensus 12 ~~KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R 45 (97)
T 2zkr_2 12 RNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKR 45 (97)
T ss_dssp CCCCEECCTTTCSSCEETTSCCBTTTCTTTSSCC
T ss_pred cCCCCCcCCCCCCccCcCccccCcccCCchHhcc
Confidence 3355668999999999777666667999998653
No 37
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=24.43 E-value=23 Score=24.62 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=9.7
Q ss_pred CCCCeEEEeccC
Q 028857 158 HFEEGIYNCSAC 169 (202)
Q Consensus 158 ~~~~G~Y~C~~C 169 (202)
..+.|+|.|++-
T Consensus 86 ~~DsG~Y~C~~~ 97 (114)
T 1eeq_A 86 AEDVAVYYCQQY 97 (114)
T ss_dssp GGGCEEEEEEEC
T ss_pred cccCEEEEEEEe
Confidence 358999999864
No 38
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.10 E-value=20 Score=23.40 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=12.8
Q ss_pred CCCeEEEeccCCCCCCCC
Q 028857 159 FEEGIYNCSACGTPLYKS 176 (202)
Q Consensus 159 ~~~G~Y~C~~C~~pLF~S 176 (202)
+.--.-+|..||.|+--|
T Consensus 13 ~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCEEECTTTCCEEETT
T ss_pred ccccchhhcccCCcchHH
Confidence 344566899999997543
No 39
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=23.58 E-value=28 Score=24.07 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=10.3
Q ss_pred CCCCCeEEEeccC
Q 028857 157 KHFEEGIYNCSAC 169 (202)
Q Consensus 157 ~~~~~G~Y~C~~C 169 (202)
...+.|+|.|+.-
T Consensus 80 ~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 80 QESDSAVYYCALS 92 (112)
T ss_dssp CSTTCSEEEEEEE
T ss_pred ChhhCEEEEEEEE
Confidence 3469999999874
No 40
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=22.33 E-value=26 Score=27.29 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=13.8
Q ss_pred CCCCeEEEeccCC--CCCCCCCC
Q 028857 158 HFEEGIYNCSACG--TPLYKSTT 178 (202)
Q Consensus 158 ~~~~G~Y~C~~C~--~pLF~S~~ 178 (202)
..+.|+|.|++.. ..+|...+
T Consensus 221 ~~D~G~Y~C~~~~~~~~~fg~gt 243 (257)
T 3gkz_A 221 AEDAASYFCHQWSSFPFTFGSGT 243 (257)
T ss_dssp GGGCEEEEEEECSSSSCEECCCE
T ss_pred hHHCEEEEEEEccCCceEEcCCE
Confidence 3589999998753 44554433
No 41
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.21 E-value=45 Score=21.90 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=8.2
Q ss_pred EEEeccCCCC
Q 028857 163 IYNCSACGTP 172 (202)
Q Consensus 163 ~Y~C~~C~~p 172 (202)
.|.|..||.-
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 5999999943
No 42
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.20 E-value=44 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.4
Q ss_pred CCCCCeEEEeccCC
Q 028857 157 KHFEEGIYNCSACG 170 (202)
Q Consensus 157 ~~~~~G~Y~C~~C~ 170 (202)
...+.|.|.|.+.+
T Consensus 76 ~~~D~G~Y~C~a~n 89 (113)
T 2cpc_A 76 QLEDSGEYLCEIDD 89 (113)
T ss_dssp CTTTCEEEEEESSS
T ss_pred CcccCEEEEEEEec
Confidence 34689999998876
No 43
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=21.70 E-value=21 Score=25.84 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.7
Q ss_pred CCCCeEEEeccC
Q 028857 158 HFEEGIYNCSAC 169 (202)
Q Consensus 158 ~~~~G~Y~C~~C 169 (202)
..+.|+|.|+.-
T Consensus 75 ~~DsG~Y~C~~~ 86 (121)
T 2i24_N 75 VKDSGTYRCKPE 86 (121)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhhCEEEEEEEe
Confidence 458999999873
No 44
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.06 E-value=59 Score=22.66 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCC--CCCCCCCCCCCCCCccCCcc
Q 028857 136 PEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTP--LYKSTTKFNSGCGWPAFYEG 192 (202)
Q Consensus 136 ~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~p--LF~S~~KFdSg~GWPSF~~~ 192 (202)
-|.|.|=-..| ....|.-......-.|.|..||.. |=..+.-.=..||-=-.++.
T Consensus 3 re~~q~p~~~~--~~~~~g~~~~~~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 3 REGFQIPTNLD--AAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp ------------------------CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred cccccCCCCcC--ccccccccCCCceEEEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 34555544223 333333333346788999999998 55455555556776444444
No 45
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=20.88 E-value=25 Score=24.39 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.1
Q ss_pred CCCCeEEEeccCC
Q 028857 158 HFEEGIYNCSACG 170 (202)
Q Consensus 158 ~~~~G~Y~C~~C~ 170 (202)
..+.|+|.|++-.
T Consensus 87 ~~DsG~Y~C~~~~ 99 (120)
T 2yz1_A 87 PEDAGTYYCVKFQ 99 (120)
T ss_dssp GGGCEEEEEEEEE
T ss_pred HHHCEEEEEEEEc
Confidence 3589999998643
No 46
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=20.18 E-value=33 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=10.1
Q ss_pred CCCCeEEEeccCC
Q 028857 158 HFEEGIYNCSACG 170 (202)
Q Consensus 158 ~~~~G~Y~C~~C~ 170 (202)
..+.|+|.|++-.
T Consensus 83 ~~DsG~Y~C~~~~ 95 (111)
T 1i3g_L 83 SEDLADYFCQQYS 95 (111)
T ss_dssp GGGCSEEEEEECS
T ss_pred HHHCEEEEEEEec
Confidence 4589999998743
No 47
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=20.08 E-value=35 Score=22.46 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=10.8
Q ss_pred CCCCeEEEeccCCC
Q 028857 158 HFEEGIYNCSACGT 171 (202)
Q Consensus 158 ~~~~G~Y~C~~C~~ 171 (202)
..+.|.|.|.+.+.
T Consensus 71 ~~D~G~Y~C~a~n~ 84 (98)
T 1gl4_B 71 PSDAGTYVCTGSNM 84 (98)
T ss_dssp GGGCEEEEEEEECS
T ss_pred hhhCEEEEEEecCC
Confidence 35799999987653
No 48
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=20.03 E-value=51 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=11.3
Q ss_pred CCCCeEEEeccCCCC
Q 028857 158 HFEEGIYNCSACGTP 172 (202)
Q Consensus 158 ~~~~G~Y~C~~C~~p 172 (202)
..+.|+|.|.+-...
T Consensus 81 ~~D~G~Y~C~v~~~~ 95 (109)
T 2oyp_A 81 LDDHGTYCCRIQFPG 95 (109)
T ss_dssp GGGCEEEEEEECCSS
T ss_pred ChhCeEEEEEEEcCC
Confidence 458999999876543
Done!