BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028859
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F GC S V+ ++ + G+++ WGL V+ + +++GHISG HF
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F GC S V+ + + G+++ WGL V+ + +++GHISG HF
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F GC S V+ ++ + G+++ +GL V+ + +++GHISG HF
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F GC S V+ ++ + G+++ +GL V+ + +++GHISG HF
Sbjct: 3 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 62
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 63 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 122
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 123 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 157
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG HF
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG HF
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
+KL AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG HF
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
NP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
P G S + A V+E +++ + VI G ATD A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 30/169 (17%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLV 94
++ AE++GT+ ++F G + V+ L P I + + L
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 95 VMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK 154
+ ++YSLG ISGAH NP+VTIA + RFP ++V PYI+ Q +G+ L + LLF
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLFLAC 122
Query: 155 QDQFAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194
A T+ P QA + E I TF LM VI GVA D RA
Sbjct: 123 VGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERA 171
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGIS-IVWGLVVMVLVYSLGHISGA 108
+ Q ++ E +GT+ ++ V +E+ + PG + +V GL V ++ ++G+I+G+
Sbjct: 144 YGQAILTEAIGTFLLMLVIMGVAV----DER--APPGFAGLVIGLTVGGIITTIGNITGS 197
Query: 109 HFNPSVTIAHATCKRFP----WKQVPPYILCQVLGSTLAAGTLRLLFQE 153
NP+ T W+ P Y++ ++G+ AA L +E
Sbjct: 198 SLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAKE 246
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 30/173 (17%)
Query: 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIV 90
V ++ +AE +GT+ ++F G S V L + P I +
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 91 WGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL 150
+G + +Y+LG+ISG H NP+VTI + K+FP ++V PYI+ Q+LG+ + +
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS----FI 117
Query: 151 FQEKQDQFAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194
F + A T+ P S QA + E + TF LM I G+A D RA
Sbjct: 118 FLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERA 170
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
+ + Q ++AE++GT+ ++ + V+ K + I+ GL V ++ +LG+ISG
Sbjct: 141 ISYWQAMLAEVVGTFLLMIT-IMGIAVDERAPKGFA----GIIIGLTVAGIITTLGNISG 195
Query: 108 AHFNPSVTIAHATCKRF-----PWKQVPPYILCQVLGSTLAAGTLRLLFQE 153
+ NP+ T W Y++ ++G+ LAA T + L E
Sbjct: 196 SSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTSE 246
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 42 DSVYFSVPFM-QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLV 99
+++YF M +KL+AE GT++++F GC S V ++ + G+++ +GL V+ +
Sbjct: 20 ENLYFQSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMA 79
Query: 100 YSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK----- 154
Y++G ISG HFNP+V++ RFP + PY++ QV G+ +AA L ++ K
Sbjct: 80 YAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDL 139
Query: 155 ----QDQFAGTLPAG-SNIQAFVMEFIITFYLMFVISGVATDNR 193
+ + P G S + A ++E I+T + + VI G +T R
Sbjct: 140 GGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILG-STHGR 182
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 55 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 114
+AE LGT +IF G V IS++WGL V + +Y +SGAH NP+V
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 115 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL-----RLLFQEKQDQ-----------F 158
TIA F ++V P+I+ QV G+ AA + L F +Q
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
Query: 159 AGTLPAGSN-----IQAFVMEFIITFYLMFVISGVATDNRAV 195
AGT N +QAF +E +IT LM +I + D V
Sbjct: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGV 173
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVV--NLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + N V + IS+ +GL + +V GHISG
Sbjct: 12 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 71
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 72 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGN 131
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNR 193
+ A ++E IITF L+F I D R
Sbjct: 132 LTAGHGLLVELIITFQLVFTIFASCDDKR 160
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVV--NLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + N V + IS+ +GL + +V GHISG
Sbjct: 51 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 110
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 111 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGN 170
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNR 193
+ A ++E IITF L+F I D R
Sbjct: 171 LTAGHGLLVELIITFQLVFTIFASCDDKR 199
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 55 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 114
+AE LGT +IF G V IS+++GL V + +Y +SGAH NP+V
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 115 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL-----RLLFQEKQDQ-----------F 158
TIA F ++V P+I+ QV G+ AA + L F +Q
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
Query: 159 AGTLPAGSN-----IQAFVMEFIITFYLMFVISGVATDNRAV 195
AGT N +QAF +E +IT LM +I + D V
Sbjct: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGV 173
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI--VSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + EK V + IS+ +GL + +V GHISG
Sbjct: 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISG 62
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 63 GHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGN 122
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNR 193
+ A ++E IITF L+F I R
Sbjct: 123 LTAGHGLLVELIITFQLVFTIFASCDSKR 151
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVV--NLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + N V + IS+ +GL + +V GHISG
Sbjct: 12 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 71
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 72 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGN 131
Query: 168 IQA---FVMEFIITFYLMFVI 185
+ A ++E IITF L+F I
Sbjct: 132 LTAGHGLLVELIITFQLVFTI 152
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 46 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG----ISIVWGLVVMVLVYS 101
F ++++ + E LGT+ ++F G + N L G + + WGL V +
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEGATA----NFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 102 LGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ-----EKQD 156
+SGAH N +V+I ++ +F K++P Y Q+LG+ + T+ L+ K
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIP 120
Query: 157 QFAGTL---PAGSNIQAFVMEFIIT 178
QFA P+ S AF E I+T
Sbjct: 121 QFAWETSRNPSISLTGAFFNELILT 145
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAVGSS 198
G N A E I TF L++ + R+ S
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDS 192
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAVGSS 198
G N A E I TF L++ + R+ S
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDS 192
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 56 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAVGSS 198
G N A E I TF L++ + R+ S
Sbjct: 176 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDS 211
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAVGSS 198
G N A E I TF L++ + R+ S
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDS 215
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAVGSS 198
G N A E I TF L++ + R+ S
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDS 215
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHIS 106
SV F++ + AE L T +F G S + + ++ I++ +GL + L +LG +S
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSALKW--PSALPTILQIALAFGLAIGTLAQALGPVS 65
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL---RLLFQEKQDQFAGTLP 163
G H NP++T+A + + Y+ Q++G+ AG L L
Sbjct: 66 GGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNN 125
Query: 164 AGSNIQAFVMEFIITFYLMFVISGVATDNR 193
+ QA V+E I+TF L I +TD+R
Sbjct: 126 NTTQGQAMVVELILTFQLALCIFA-STDSR 154
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVY 100
S F + + AE T F +F G + + PG +++ +GL + LV
Sbjct: 2 SASFWRAIFAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQ 53
Query: 101 SLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG 160
++GHISGAH NP+VT A + + Y++ Q+LG+ A +L+ G
Sbjct: 54 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAA---VLYSVTPPAVRG 110
Query: 161 TL------PAGSNIQAFVMEFIITFYLMFVISGVAT-DNRAVG 196
L P S QA ++E +T L FV+ AT D R G
Sbjct: 111 NLALNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNG 151
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVY 100
S F + + AE T F +F G + + PG +++ +GL + LV
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQ 57
Query: 101 SLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG 160
++GHISGAH NP+VT A + + Y++ Q+LG+ A +L+ G
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAA---VLYSVTPPAVRG 114
Query: 161 TL------PAGSNIQAFVMEFIITFYLMFVISGVAT-DNRAVG 196
L P S QA ++E +T L FV+ AT D R G
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNG 155
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVV-----VNLNNEKIVSLPGISIVWGLVVMVLVYSLGH 104
F + ++AE L T +F S + V N + +S+ +GL + L S+GH
Sbjct: 10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGH 69
Query: 105 ISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL 147
ISGAH NP+VT+ + + YI+ Q +G+ +A L
Sbjct: 70 ISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAIL 112
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVYSLG 103
F + + AE T F +F G + + PG +++ +GL + LV ++G
Sbjct: 3 FWRAIFAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQAVG 54
Query: 104 HISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTL- 162
HISGAH NP+VT A + + Y++ Q+LG+ A +L+ G L
Sbjct: 55 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAA---VLYSVTPPAVRGNLA 111
Query: 163 -----PAGSNIQAFVMEFIITFYLMFVISGVAT-DNRAVG 196
P S QA ++E +T L FV+ AT D R G
Sbjct: 112 LNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNG 149
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVV-------VNLNNEKIVSLPGISIVWGLVVMVLVYSL 102
F + ++AE L IF S + N + +S+ +GL + L S+
Sbjct: 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69
Query: 103 GHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-- 160
GHISGAH NP+VT+ + + YI+ Q +G+ +A L + D G
Sbjct: 70 GHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLN 129
Query: 161 -TLPAGSNIQAFVMEFIITFYLMFVISGVATDNR 193
P ++ Q +E I T L+ + +AT +R
Sbjct: 130 ALAPGVNSGQGLGIEIIGTLQLVLCV--LATTDR 161
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVY 100
S F + + AE + F +F G + + PG +++ +GL + LV
Sbjct: 6 SASFWRAICAEFFASLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQ 57
Query: 101 SLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG 160
++GHISGAH NP+VT A + + Y++ Q+LG+ A +L+ G
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAA---VLYSVTPPAVRG 114
Query: 161 TL------PAGSNIQAFVMEFIITFYLMFVISGVAT-DNRAVG 196
L P S QA ++E +T L FV+ AT D R G
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNG 155
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 54 LMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG---------ISIVWGLVVMVLVYSLGH 104
+ E +GT+ +++ A V+ + N+ + G IS +G VMV V+
Sbjct: 48 MSGEFVGTFLFLWS--AFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYR 105
Query: 105 ISGAHFNPSVTIAHATCKRFP 125
+SG + NP+VT+A + P
Sbjct: 106 VSGGNLNPAVTLALVLARAIP 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,406,446
Number of Sequences: 62578
Number of extensions: 195263
Number of successful extensions: 529
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 39
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)