Query 028859
Match_columns 202
No_of_seqs 163 out of 1418
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00184 aquaporin NIP1; Provi 100.0 2.2E-33 4.8E-38 242.3 17.3 150 46-195 49-205 (296)
2 PLN00182 putative aquaporin NI 100.0 8.1E-33 1.7E-37 237.5 17.2 185 1-195 1-186 (283)
3 PLN00026 aquaporin NIP; Provi 100.0 9.8E-31 2.1E-35 225.7 15.8 148 47-195 67-214 (298)
4 KOG0223 Aquaporin (major intri 100.0 4.8E-31 1E-35 220.9 12.8 152 44-195 4-159 (238)
5 PTZ00016 aquaglyceroporin; Pro 100.0 2.7E-30 5.8E-35 223.3 15.9 146 48-194 47-209 (294)
6 KOG0224 Aquaporin (major intri 100.0 8.1E-31 1.8E-35 222.6 9.9 148 47-195 28-194 (316)
7 COG0580 GlpF Glycerol uptake f 100.0 2.1E-30 4.6E-35 216.8 12.1 146 49-194 3-162 (241)
8 PF00230 MIP: Major intrinsic 100.0 3.2E-29 6.9E-34 208.8 12.9 150 46-195 3-162 (227)
9 PLN00183 putative aquaporin NI 100.0 2.2E-28 4.8E-33 209.3 14.4 146 47-193 41-186 (274)
10 PLN00027 aquaporin TIP; Provis 100.0 9.7E-28 2.1E-32 203.5 15.0 147 48-194 17-168 (252)
11 PRK05420 aquaporin Z; Provisio 100.0 1.1E-27 2.4E-32 200.8 14.8 143 51-194 2-157 (231)
12 PLN00167 aquaporin TIP5; Provi 100.0 2.1E-27 4.6E-32 201.7 16.5 146 47-192 18-168 (256)
13 PLN00166 aquaporin TIP2; Provi 100.0 1.4E-27 3E-32 202.3 15.0 147 48-194 15-166 (250)
14 cd00333 MIP Major intrinsic pr 99.9 8.2E-26 1.8E-30 189.0 12.7 142 52-193 1-155 (228)
15 TIGR00861 MIP MIP family chann 99.9 2.8E-24 6E-29 178.4 12.1 136 56-191 1-145 (216)
16 PLN00182 putative aquaporin NI 99.7 4.4E-17 9.5E-22 140.3 10.0 98 49-152 157-254 (283)
17 PLN00183 putative aquaporin NI 99.7 6.3E-17 1.4E-21 138.8 9.8 111 50-166 160-270 (274)
18 cd00333 MIP Major intrinsic pr 99.7 1.2E-16 2.5E-21 133.7 10.3 99 48-149 127-227 (228)
19 PLN00026 aquaporin NIP; Provi 99.7 8.5E-17 1.9E-21 139.2 9.6 98 49-152 185-282 (298)
20 TIGR00861 MIP MIP family chann 99.6 7.6E-16 1.6E-20 127.8 9.1 95 49-146 120-215 (216)
21 KOG0223 Aquaporin (major intri 99.6 3.5E-16 7.5E-21 131.4 6.8 99 49-154 130-228 (238)
22 PLN00184 aquaporin NIP1; Provi 99.6 5.7E-15 1.2E-19 127.9 10.2 98 49-152 176-273 (296)
23 PLN00166 aquaporin TIP2; Provi 99.5 3.2E-14 7E-19 120.7 10.7 100 49-152 138-237 (250)
24 PRK05420 aquaporin Z; Provisio 99.5 3.2E-14 7E-19 119.4 10.2 100 49-154 130-230 (231)
25 PLN00027 aquaporin TIP; Provis 99.5 6.5E-14 1.4E-18 119.0 10.4 100 49-152 140-239 (252)
26 PTZ00016 aquaglyceroporin; Pro 99.5 1.2E-13 2.6E-18 119.7 9.9 102 48-153 181-291 (294)
27 PLN00167 aquaporin TIP5; Provi 99.5 1.4E-13 3.1E-18 117.1 9.6 101 49-154 142-242 (256)
28 COG0580 GlpF Glycerol uptake f 99.4 6.3E-13 1.4E-17 111.7 10.1 100 48-152 133-240 (241)
29 PF00230 MIP: Major intrinsic 99.4 5.8E-13 1.3E-17 110.9 8.5 95 49-147 133-227 (227)
30 KOG0224 Aquaporin (major intri 98.6 1.1E-07 2.3E-12 81.9 6.0 104 45-152 162-275 (316)
31 PRK10805 formate transporter; 72.6 59 0.0013 28.2 10.5 98 86-187 70-181 (285)
32 COG2116 FocA Formate/nitrite f 70.8 69 0.0015 27.6 11.9 104 83-188 63-179 (265)
33 PF01226 Form_Nir_trans: Forma 59.7 1.1E+02 0.0023 25.9 11.3 102 84-188 57-171 (250)
34 PRK11562 nitrite transporter N 53.5 1.5E+02 0.0032 25.6 11.0 99 87-188 61-171 (268)
35 PRK09713 focB putative formate 42.7 2.3E+02 0.0049 24.6 10.8 100 86-188 69-181 (282)
36 PF03033 Glyco_transf_28: Glyc 40.5 8.2 0.00018 28.5 -0.3 19 105-123 7-25 (139)
37 PF09512 ThiW: Thiamine-precur 27.1 1.9E+02 0.0042 22.8 5.4 25 126-150 123-147 (150)
38 TIGR00790 fnt formate/nitrite 27.1 3.7E+02 0.0081 22.4 9.0 77 111-187 68-157 (239)
39 PRK12446 undecaprenyldiphospho 25.5 15 0.00033 32.4 -1.2 21 102-122 7-27 (352)
40 PRK15071 lipopolysaccharide AB 21.1 1.7E+02 0.0037 25.5 4.6 59 56-114 276-335 (356)
No 1
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=2.2e-33 Score=242.34 Aligned_cols=150 Identities=71% Similarity=1.233 Sum_probs=127.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCC
Q 028859 46 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP 125 (202)
Q Consensus 46 ~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~ 125 (202)
.+.++++.+++||+|||+|+|++|+++..+...+....++.++++||+++++.+++++++||+|+|||||+++++.++++
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~ 128 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP 128 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence 45578999999999999999999998754433222245777899999999999999999999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHhhHHhhcccccc-------cccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859 126 WKQVPPYILCQVLGSTLAAGTLRLLFQEKQD-------QFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV 195 (202)
Q Consensus 126 ~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~-------~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~ 195 (202)
|.++++||++|++|+++|+++++.+++.... ...++.|..+.+++|+.|+++||+|+++++.++.|+|+.
T Consensus 129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~ 205 (296)
T PLN00184 129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAI 205 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCC
Confidence 9999999999999999999999998853211 123356667889999999999999999999987776644
No 2
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=8.1e-33 Score=237.51 Aligned_cols=185 Identities=49% Similarity=0.786 Sum_probs=146.6
Q ss_pred CCCCCCCCCCCceeeeeechhhh-hcCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhhheecccCC
Q 028859 1 MADNSGTGSNGVCVTFKDCEDAI-QNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNE 79 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~ 79 (202)
|+|..++-+.++ +++.|.+. .|++++.+++-+...+ ..+++|++++||+|||+|+|++++++......+
T Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~ 70 (283)
T PLN00182 1 MTSHSDEIEEEQ---ISRIEKGNGKDSQGGIETAICTSPS-------IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG 70 (283)
T ss_pred CCCCCCCCCccc---ccccccCCCCCcccccccchhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 677666555333 55666655 4666666543322222 245889999999999999999999866433222
Q ss_pred CccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccccccccc
Q 028859 80 KIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA 159 (202)
Q Consensus 80 ~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~ 159 (202)
.......++++||+++++.+++++++||+|+|||||+++++.++++|.++++||++|++|+++|+++++.+++......+
T Consensus 71 ~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~ 150 (283)
T PLN00182 71 GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFF 150 (283)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccee
Confidence 22345678889999999999999999999999999999999999999999999999999999999999999865444556
Q ss_pred ccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859 160 GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV 195 (202)
Q Consensus 160 ~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~ 195 (202)
++.|+.+.+++++.|+++|++|+++++.++.++|+.
T Consensus 151 ~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~ 186 (283)
T PLN00182 151 GTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAV 186 (283)
T ss_pred eCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccC
Confidence 678888899999999999999999999876666543
No 3
>PLN00026 aquaporin NIP; Provisional
Probab=99.97 E-value=9.8e-31 Score=225.72 Aligned_cols=148 Identities=47% Similarity=0.707 Sum_probs=124.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCC
Q 028859 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPW 126 (202)
Q Consensus 47 ~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~ 126 (202)
..+++|++++||+|||+|+|+++++...+........++.+++++|+++++.+++++++||+|+|||||+++++.++++|
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~ 146 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPW 146 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcH
Confidence 44688999999999999999999765443222222356678899999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhcccccccccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV 195 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~ 195 (202)
.+.|+||++|++|+++|+++++.++++.... ..+.|+.+.+++++.|+++||+|+++++.++.|+|+.
T Consensus 147 ~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~-g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~ 214 (298)
T PLN00026 147 KHVPAYIAAQVSASICASFALKGVFHPFMSG-GVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAV 214 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccC-ceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCCc
Confidence 9999999999999999999999988642221 1266778899999999999999999999886676543
No 4
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.8e-31 Score=220.93 Aligned_cols=152 Identities=43% Similarity=0.688 Sum_probs=134.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccC
Q 028859 44 VYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKR 123 (202)
Q Consensus 44 ~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~ 123 (202)
+..+.+.+|++++||++|++++|++|++...+.......+.+.+++.+|+.+++.+++++++||||+|||||+++++.++
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC
Confidence 34456799999999999999999999998766644445667889999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHhhHHhhcccc---cc-cccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859 124 FPWKQVPPYILCQVLGSTLAAGTLRLLFQEK---QD-QFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV 195 (202)
Q Consensus 124 ~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~---~~-~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~ 195 (202)
+++.++..||++|++|+++|+.+.+.+.+++ .. ......|+.+.+|+++.|++.||+|+++++.+++|+|+.
T Consensus 84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~ 159 (238)
T KOG0223|consen 84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS 159 (238)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence 9999999999999999999999999999864 11 122245667999999999999999999999988998876
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.97 E-value=2.7e-30 Score=223.33 Aligned_cols=146 Identities=32% Similarity=0.514 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~ 127 (202)
++++|++++||+||++|+|+++++.......+...+...++++||+++++.+++++++||+|+|||||+++++.++++|.
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~ 126 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHH
Confidence 57889999999999999999999865433222223466789999999999999999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHhhHHhhcccccc-----------------cccccCCCcChHHHHHHHHHHHHHHHHHHHhhcc
Q 028859 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQD-----------------QFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 190 (202)
Q Consensus 128 ~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~-----------------~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~ 190 (202)
+.++|+++|++|+++|++++|.+|++... ..+.+.|+.+..++|+.|+++|++|+++++.+.
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~- 205 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAIT- 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999998864210 123456777889999999999999999999985
Q ss_pred CCCC
Q 028859 191 DNRA 194 (202)
Q Consensus 191 ~~r~ 194 (202)
|+|+
T Consensus 206 d~~~ 209 (294)
T PTZ00016 206 DPNN 209 (294)
T ss_pred cCcc
Confidence 5443
No 6
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=8.1e-31 Score=222.58 Aligned_cols=148 Identities=34% Similarity=0.569 Sum_probs=129.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhheecccC-CCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCC
Q 028859 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNN-EKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP 125 (202)
Q Consensus 47 ~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~-~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~ 125 (202)
.+++.|.+++||+||++|++++++++.....+ +....+..+.++||+++++.+++.+++||||+|||||+++++.|+++
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p 107 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLP 107 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCC
Confidence 45799999999999999999999998654433 44567778899999999999999999999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHhhHHhhccccc----------------ccccccCCC--cChHHHHHHHHHHHHHHHHHHHh
Q 028859 126 WKQVPPYILCQVLGSTLAAGTLRLLFQEKQ----------------DQFAGTLPA--GSNIQAFVMEFIITFYLMFVISG 187 (202)
Q Consensus 126 ~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~----------------~~~~~t~p~--~s~~~~f~~E~~~T~~L~~~il~ 187 (202)
|.+.++|+++|++||++|++.+|.+|.+.. ...++|+|. .+.+++|+.|+++|.+|++++++
T Consensus 108 ~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~a 187 (316)
T KOG0224|consen 108 WKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFA 187 (316)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeE
Confidence 999999999999999999999999886422 223446776 48899999999999999999999
Q ss_pred hccCCCCc
Q 028859 188 VATDNRAV 195 (202)
Q Consensus 188 ~~~~~r~~ 195 (202)
+ .|+|+.
T Consensus 188 I-~D~rN~ 194 (316)
T KOG0224|consen 188 I-TDKRNP 194 (316)
T ss_pred E-ecCCCC
Confidence 8 687763
No 7
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=216.76 Aligned_cols=146 Identities=45% Similarity=0.691 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecc---cCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNL---NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP 125 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~---~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~ 125 (202)
+..+++++||+||++|++++++++.... .++...++..++++||+++++.+|+.+++||+|+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 4678889999999999999999875433 2344567888999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHhhHHhhccccccc----------ccccCCCc-ChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 126 WKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQ----------FAGTLPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 126 ~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~----------~~~t~p~~-s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
|.+.+.||++|++|+++|+.+++.+|+++... .+.|.|.. +..++|+.|+++||+|+++|+.+++|+|.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999988653221 23367764 78899999999999999999998776654
No 8
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.96 E-value=3.2e-29 Score=208.82 Aligned_cols=150 Identities=39% Similarity=0.628 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhee-cccCCC-----ccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHH
Q 028859 46 FSVPFMQKLMAEILGTYFMIFAGCASVVV-NLNNEK-----IVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHA 119 (202)
Q Consensus 46 ~~~~~~~~~~~EfigT~llv~~~~~~~~~-~~~~~~-----~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~ 119 (202)
.+.+++|++++||+||++++|+++++... .....+ ..++..+++.+|+.+++.++.++++||+|+|||||++.+
T Consensus 3 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~ 82 (227)
T PF00230_consen 3 KSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFA 82 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhhee
Confidence 45679999999999999999999886542 222111 134667899999999999999999999999999999999
Q ss_pred hccCCCCCCchhhhhhHHHHHHHHHhhHHhhcccc--cccccc--cCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859 120 TCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK--QDQFAG--TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV 195 (202)
Q Consensus 120 l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~--~~~~~~--t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~ 195 (202)
+.|+++|.+.+.|+++|++|+++|+.+.+.++++. ...... ..|+.+..++|+.|+++|++|+++++.+.+++|+.
T Consensus 83 l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~ 162 (227)
T PF00230_consen 83 LTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKF 162 (227)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSS
T ss_pred eeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999763 222333 34556899999999999999999999997666544
No 9
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.96 E-value=2.2e-28 Score=209.31 Aligned_cols=146 Identities=37% Similarity=0.589 Sum_probs=124.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCC
Q 028859 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPW 126 (202)
Q Consensus 47 ~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~ 126 (202)
+.+.+|.+++||++||+|+|+++++...........+...+++.+|+.+++.+++++++||+|+|||||+++++.++++|
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~ 120 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPW 120 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCH
Confidence 35688999999999999999999886544332222345668899999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhcccccccccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
.++|+||++|++|+++|+.+++.+++.. .....+.|..+.+++++.|+++|++|++.++.+..++|
T Consensus 121 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~-~~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~ 186 (274)
T PLN00183 121 SKVPLYITAQTVGSVLATYVGVSVYGVK-ADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQ 186 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCcccHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 9999999999999999999999988643 23445667777889999999999999999998865543
No 10
>PLN00027 aquaporin TIP; Provisional
Probab=99.95 E-value=9.7e-28 Score=203.50 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheec---ccC--CCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVN---LNN--EKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK 122 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~---~~~--~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g 122 (202)
++.+|++++||++|++|+++++++.... ... .....++.+++++|+++++.+++++++||+|+|||||+++++.+
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g 96 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC
Confidence 4588999999999999999999885421 111 11234557899999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 123 RFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 123 ~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
+++|.+.|+|+++|++|+++|+.+++.++++.......+.|+.+.+++++.|+++||+|+++++.++.|+|+
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~ 168 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKK 168 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999988876543444556777889999999999999999999988767664
No 11
>PRK05420 aquaporin Z; Provisional
Probab=99.95 E-value=1.1e-27 Score=200.80 Aligned_cols=143 Identities=38% Similarity=0.705 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheecc-cCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCc
Q 028859 51 MQKLMAEILGTYFMIFAGCASVVVNL-NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQV 129 (202)
Q Consensus 51 ~~~~~~EfigT~llv~~~~~~~~~~~-~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~ 129 (202)
+|++++||+||++|+|++++++.... ..+...+...+++++|+++++.+++++++||+|+|||||+++++.++++|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 68999999999999999999764322 12222346678999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhHHhhccccccc------c-----cccCCC-cChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 130 PPYILCQVLGSTLAAGTLRLLFQEKQDQ------F-----AGTLPA-GSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 130 ~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~------~-----~~t~p~-~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
+.|+++|++|+++|+.+++.++++.... . ..+.|. .+..++++.|+++|++|+++++.+. |+|+
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~-~~~~ 157 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGAT-DKRA 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 9999999999999999999887543211 0 112343 3778999999999999999999975 4544
No 12
>PLN00167 aquaporin TIP5; Provisional
Probab=99.95 E-value=2.1e-27 Score=201.71 Aligned_cols=146 Identities=23% Similarity=0.291 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhheeccc--C---CCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhc
Q 028859 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLN--N---EKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATC 121 (202)
Q Consensus 47 ~~~~~~~~~~EfigT~llv~~~~~~~~~~~~--~---~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~ 121 (202)
.++++|++++||+|||+|+++++++...... . ....+++.+++.||+++++.+++++++||+|+|||||+++++.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 4568999999999999999999998764321 1 1123467899999999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCC
Q 028859 122 KRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDN 192 (202)
Q Consensus 122 g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~ 192 (202)
++++|.++++|+++|++|+++|+.+++.++++.........++.+.+++++.|+++|++|+++++.+++++
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~ 168 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPR 168 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988764322111122344778999999999999999999875433
No 13
>PLN00166 aquaporin TIP2; Provisional
Probab=99.95 E-value=1.4e-27 Score=202.27 Aligned_cols=147 Identities=24% Similarity=0.372 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheec-c-cCC---CccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVN-L-NNE---KIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK 122 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~-~-~~~---~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g 122 (202)
.+.+|++++|+++||+|+|+++++.... . ..+ ....++.+++.+|+.+++.+++++++||+|+|||||+++++.+
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 4678999999999999999999986531 1 111 1234667899999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 123 RFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 123 ~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
+++|.+.|+||++|++|+++|+.+++.++.+......+..++.+..++++.|+++||+|+++++.++.|+|+
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~ 166 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKK 166 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999886433222234456688999999999999999999998776653
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.93 E-value=8.2e-26 Score=188.97 Aligned_cols=142 Identities=43% Similarity=0.706 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhheecccCC-CccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCch
Q 028859 52 QKLMAEILGTYFMIFAGCASVVVNLNNE-KIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVP 130 (202)
Q Consensus 52 ~~~~~EfigT~llv~~~~~~~~~~~~~~-~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~ 130 (202)
|++++||+||++|+++++++.......+ ...++..+++.||+.+.+.+++++++||+|+|||+|+++++.++++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 4689999999999999999876544322 123456789999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhHHhhccccccc----------ccccCCC--cChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 131 PYILCQVLGSTLAAGTLRLLFQEKQDQ----------FAGTLPA--GSNIQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 131 ~Yi~aQ~lGa~~a~~~~~~~~~~~~~~----------~~~t~p~--~s~~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
+|+++|++|+++|+.+++.+++++... .+.+.|. .+.+++++.|+++|++|++.++.+..+++
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~ 155 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPN 155 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999999999999988653221 1123343 47899999999999999999999865443
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.91 E-value=2.8e-24 Score=178.39 Aligned_cols=136 Identities=38% Similarity=0.542 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhhhheecccC---CCc--cCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCch
Q 028859 56 AEILGTYFMIFAGCASVVVNLNN---EKI--VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVP 130 (202)
Q Consensus 56 ~EfigT~llv~~~~~~~~~~~~~---~~~--~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~ 130 (202)
+||+||++|+++++++....... ... .++..+++.||+.+...+++++++||+|+|||||+++++.++++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999999986642211 111 1466789999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhHHhhcccccccc--ccc--CCCcChHHHHHHHHHHHHHHHHHHHhhccC
Q 028859 131 PYILCQVLGSTLAAGTLRLLFQEKQDQF--AGT--LPAGSNIQAFVMEFIITFYLMFVISGVATD 191 (202)
Q Consensus 131 ~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~--~~t--~p~~s~~~~f~~E~~~T~~L~~~il~~~~~ 191 (202)
+|+++|++|+++|+.+++.++++..... ... .++.+.+++++.|+++|++|+++++....+
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~ 145 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDP 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecC
Confidence 9999999999999999999887542111 111 234588999999999999999999987543
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.71 E-value=4.4e-17 Score=140.25 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+.++.++.|+++|++|++++++....++.. .. ..++.+|+.+++.+++.+++||+|+||||||++++.++ .|.+
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~---~~--~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~~~~ 230 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSRAV---GE--LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-RYKG 230 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccccC---Cc--chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-cccc
Confidence 478999999999999999988764432211 11 25788999999999999999999999999999999765 5889
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.+..
T Consensus 231 ~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 231 IWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998863
No 17
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.70 E-value=6.3e-17 Score=138.77 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCc
Q 028859 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQV 129 (202)
Q Consensus 50 ~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~ 129 (202)
.++.++.|+++|+++++.+++....++... . ..++.+|+.+++.+++.+++||+|+|||||+++++.+ .+|.++
T Consensus 160 ~~~~~~~E~v~T~iLv~~i~~~~~~~~~~~----~-~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~~~~~~ 233 (274)
T PLN00183 160 CSSAFWVEFIATFIVMFLAASLTSQPQSLG----H-LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-WDFKDI 233 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeccccCCC----C-ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-CChhhe
Confidence 578999999999999999887654322111 1 2467889999999999999999999999999999987 579999
Q ss_pred hhhhhhHHHHHHHHHhhHHhhcccccccccccCCCcC
Q 028859 130 PPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGS 166 (202)
Q Consensus 130 ~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~~s 166 (202)
|+||++|++|+++|+.+++.++.+.........|+.|
T Consensus 234 wvy~vapilGailaa~l~~~l~~~~~~~~~~~~~~~~ 270 (274)
T PLN00183 234 WIYITAPTIGAVAGALMFHLLRLRTQPCSPNSSPNTS 270 (274)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCchh
Confidence 9999999999999999999998655444444555554
No 18
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.69 E-value=1.2e-16 Score=133.73 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCC--C
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRF--P 125 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~--~ 125 (202)
.+.++.++.|+++|++|++.++......+.. ......++.+|+.+...++..+++||+|+|||||+++++.++. +
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~---~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~ 203 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNGP---PPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARH 203 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccccccC---CCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccc
Confidence 3588999999999999999998875432211 1223468899999999999999999999999999999999987 7
Q ss_pred CCCchhhhhhHHHHHHHHHhhHHh
Q 028859 126 WKQVPPYILCQVLGSTLAAGTLRL 149 (202)
Q Consensus 126 ~~~~~~Yi~aQ~lGa~~a~~~~~~ 149 (202)
|.+.|+||++|++|+++|+++++.
T Consensus 204 ~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 204 WHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred cceeehhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 19
>PLN00026 aquaporin NIP; Provisional
Probab=99.69 E-value=8.5e-17 Score=139.19 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+.++.++.||++|++|+++++.....++..+ . ..++.+|+.+++.+++.+++||+|+||||||++++.++ +|.+
T Consensus 185 s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~---~--~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~~~~ 258 (298)
T PLN00026 185 STGQAFALEFIITFNLLFVVTAVATDTRAVG---E--LAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-NYRA 258 (298)
T ss_pred cHHHHHHHHHHHHHHHHHhheeeecCCCCcC---C--ccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-Cchh
Confidence 5789999999999999999886532222111 1 24688999999999999999999999999999999876 7999
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.+..
T Consensus 259 ~wVy~vaPilGAilga~ly~~~~~ 282 (298)
T PLN00026 259 IWIYLVAPTLGALAGAGTYTAVKL 282 (298)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888753
No 20
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.64 E-value=7.6e-16 Score=127.82 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc-CCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK-RFPWK 127 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g-~~~~~ 127 (202)
+.++.++.|+++|++|+++++.....+.... .....++.+|+.+...++..+++||+|+||||++++++.+ ..+|.
T Consensus 120 ~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~---~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~ 196 (216)
T TIGR00861 120 SSGQAFFVEFIGTAILVLVIFATTDPRNRVP---RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWG 196 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHheeecCCCCCC---CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcccccc
Confidence 5899999999999999999887654321111 1114688999999999999999999999999999999976 57899
Q ss_pred CchhhhhhHHHHHHHHHhh
Q 028859 128 QVPPYILCQVLGSTLAAGT 146 (202)
Q Consensus 128 ~~~~Yi~aQ~lGa~~a~~~ 146 (202)
++|+||++|++|+++|+.+
T Consensus 197 ~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 197 NHWVYWVGPIIGAILGALV 215 (216)
T ss_pred ceeHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 21
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3.5e-16 Score=131.37 Aligned_cols=99 Identities=25% Similarity=0.340 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|++.||.++++.++.....+.. ...++.+|+.+.+.+++.+++||++||||++|++++..+. |..
T Consensus 130 ~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~-w~~ 202 (238)
T KOG0223|consen 130 STGQGLVIEIILTFILVFTVFATATDPRRS------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS-WDD 202 (238)
T ss_pred CcchhHHHHHHHHHHHhheeEEEeecCCCc------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-CCc
Confidence 478999999999999999988744433332 3368889999999999999999999999999999998874 999
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcccc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQEK 154 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~~~ 154 (202)
+|+||++|++|+++++++++.++.++
T Consensus 203 hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 203 HWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred EEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999988654
No 22
>PLN00184 aquaporin NIP1; Provisional
Probab=99.59 E-value=5.7e-15 Score=127.92 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+.++.++.|+++|++|++++++....++... ...++.+|+.+.+.+++.+++||+++||||+|++++... .|..
T Consensus 176 s~~~af~~E~i~TfvLv~~il~~~~~~~~~~-----~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~-~~~~ 249 (296)
T PLN00184 176 SDLQAFVMEFIVTFYLMFIISGVATDNRAIG-----ELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG-CYKG 249 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHheeccCcCCC-----cchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh-cccc
Confidence 5789999999999999999887644222111 135788999999999999999999999999999999765 5789
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.+..
T Consensus 250 ~WVy~vgPilGa~laal~y~~l~~ 273 (296)
T PLN00184 250 IWIYIVAPTLGAIAGAWVYNTVRY 273 (296)
T ss_pred cchHHhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888764
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.55 E-value=3.2e-14 Score=120.68 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++|++|++..+.....++... .....++.+|+.++..+...++.||+.+||||+|++++..+ .|.+
T Consensus 138 ~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~---~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~-~~~~ 213 (250)
T PLN00166 138 GAIEGVVMEIVVTFALVYTVYATAADPKKGS---LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFSQ 213 (250)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccccc---cccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC-CCcc
Confidence 5789999999999999998887643222111 11135788899999999999999999999999999999865 5889
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.++.
T Consensus 214 ~wvywvgPi~Ga~~aa~~y~~l~~ 237 (250)
T PLN00166 214 IWIYWVGPLVGGALAGLIYGDVFI 237 (250)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887764
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.54 E-value=3.2e-14 Score=119.39 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccC-CCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKR-FPWK 127 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~-~~~~ 127 (202)
+..+.++.|+++|++|+++.+.....+. . .. ..++.+|+.+.......++.||+.+||||++++++..+ ..+.
T Consensus 130 ~~~~~~~~E~v~T~iLv~~i~~~~~~~~--~--~~--~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~ 203 (231)
T PRK05420 130 SLLAALVCEVVLTAFFLLVILGATDKRA--P--AG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALE 203 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCC--C--Cc--chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCcc
Confidence 5789999999999999998887644221 1 11 35788899999999999999999999999999999743 3456
Q ss_pred CchhhhhhHHHHHHHHHhhHHhhcccc
Q 028859 128 QVPPYILCQVLGSTLAAGTLRLLFQEK 154 (202)
Q Consensus 128 ~~~~Yi~aQ~lGa~~a~~~~~~~~~~~ 154 (202)
.+|+||++|++|+++++++++.++.++
T Consensus 204 ~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 204 QLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred ceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999988887543
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.52 E-value=6.5e-14 Score=118.99 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+.++.++.|+++||+|++..+......+.. . .....++.+|+.+...+++.++.||+.+||||++++++... .|..
T Consensus 140 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~-~--~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~-~~~~ 215 (252)
T PLN00027 140 GVWNAFVFEIVMTFGLVYTVYATAVDPKKG-D--LGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWTN 215 (252)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccccC-C--ccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh-cchh
Confidence 578999999999999999887654322211 1 11235788899999999999999999999999999999875 5889
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+.+++.++.
T Consensus 216 ~wvy~vgP~~Ga~laa~~y~~l~~ 239 (252)
T PLN00027 216 HWVYWAGPLIGGGIAGLVYELIFI 239 (252)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998874
No 26
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.49 E-value=1.2e-13 Score=119.71 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc-----
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK----- 122 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g----- 122 (202)
.+..+.++.|+++|++|+++.+.....+.... .+ ..++.+|+.+.+...+.++.||+.+||||+|++++..
T Consensus 181 ~s~~~a~~~E~i~T~iLv~~ila~~d~~~~~~--~~--~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g 256 (294)
T PTZ00016 181 EGNFYAIFSELILTAILLLVILAITDPNNCPA--FN--YLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWG 256 (294)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCccCCC--cC--cccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhcc
Confidence 35789999999999999998887643322111 11 2477789999999999999999999999999999863
Q ss_pred CCCCC----CchhhhhhHHHHHHHHHhhHHhhccc
Q 028859 123 RFPWK----QVPPYILCQVLGSTLAAGTLRLLFQE 153 (202)
Q Consensus 123 ~~~~~----~~~~Yi~aQ~lGa~~a~~~~~~~~~~ 153 (202)
+..|. ++|+||++|++|+++|+++++.+..+
T Consensus 257 ~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~ 291 (294)
T PTZ00016 257 SEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPP 291 (294)
T ss_pred ccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCC
Confidence 22443 58999999999999999998888753
No 27
>PLN00167 aquaporin TIP5; Provisional
Probab=99.49 E-value=1.4e-13 Score=117.10 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+.++.++.|+++|++|++..+.....+... .....++.+|+.+....+..+++||+.+||||++++.+..+ .|..
T Consensus 142 s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~----~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~-~~~~ 216 (256)
T PLN00167 142 TGFGASVLEGVLTFGLVYTVYAAGDPRRGL----LGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG-SFKN 216 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccccccC----CCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc-CccC
Confidence 457889999999999999887654322211 11135788899999999999999999999999999999765 5889
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcccc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQEK 154 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~~~ 154 (202)
+|+||++|++|+++++++++.++.++
T Consensus 217 ~wvywvgP~~Ga~l~a~~y~~l~~~~ 242 (256)
T PLN00167 217 QAVYWVGPLLGGAVAGLLYDNVVFPT 242 (256)
T ss_pred cEEEeHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998887543
No 28
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.44 E-value=6.3e-13 Score=111.68 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhc----cC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATC----KR 123 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~----g~ 123 (202)
++..+.++.|+++||+|++.+.+....++. +. + ..++.+|+.++....+.++.||..+||||++++.+. +.
T Consensus 133 ~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~-~~--~--~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~ 207 (241)
T COG0580 133 YSLGQAFLIEFVGTFVLVLGILALTDDGNA-NA--G--FAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGW 207 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhccCcc-cc--c--chHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCc
Confidence 368999999999999999988875542222 11 1 368888999999999999999999999999999984 31
Q ss_pred CC----CCCchhhhhhHHHHHHHHHhhHHhhcc
Q 028859 124 FP----WKQVPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 124 ~~----~~~~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
.. ..+.|+||++|++|+++|+++++.++.
T Consensus 208 ~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 208 AANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred ccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 11 158999999999999999999987653
No 29
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.42 E-value=5.8e-13 Score=110.91 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++|++|+++.+.....++.... +. ..++.+|+.+.+..+..+..||+.+||||++++.+.... |.+
T Consensus 133 s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~~--~~-~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~-~~~ 208 (227)
T PF00230_consen 133 SLGQAFFSEFIGTFILVLVILAVADDKRKFPL--GP-LAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI-WDY 208 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSTTSSSTS--SG-GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-HTT
T ss_pred hhhhhhhhhhhhhhHHHhhhhhhccccccccc--cc-ccceeEEEEEeecccccccccccccCchhhcCceeeccc-CCe
Confidence 58999999999999999988776544332221 11 357888999999999999999999999999999998765 899
Q ss_pred chhhhhhHHHHHHHHHhhH
Q 028859 129 VPPYILCQVLGSTLAAGTL 147 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~ 147 (202)
.|+||++|++|+++|++++
T Consensus 209 ~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 209 FWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEehHHHHHHHHHhhC
Confidence 9999999999999999764
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.1e-07 Score=81.92 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=81.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhc---
Q 028859 45 YFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATC--- 121 (202)
Q Consensus 45 ~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~--- 121 (202)
+...++++.++-||+||.+|+.+.|.. .++.+. .+....|+.+|+.++++-.+.|--+|-.+||||.|++.+.
T Consensus 162 ~p~ls~~n~F~DqfigTa~L~~~l~aI--~D~rN~--~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~ 237 (316)
T KOG0224|consen 162 APHLSLWNGFFDQFIGTAMLVLCLFAI--TDKRNP--IPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSI 237 (316)
T ss_pred chHhhhhHHHHHHHHHHHHHHhheeEE--ecCCCC--CCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHH
Confidence 344578999999999999999876644 333332 2333468899999999999999999999999999999885
Q ss_pred ---cC--CCC--CCchhhhhhHHHHHHHHHhhHHhhcc
Q 028859 122 ---KR--FPW--KQVPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 122 ---g~--~~~--~~~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
|. +++ ...|+-|+++++|+++|+.++..+..
T Consensus 238 aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig 275 (316)
T KOG0224|consen 238 AGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIG 275 (316)
T ss_pred HhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeee
Confidence 11 111 45677899999999999998887664
No 31
>PRK10805 formate transporter; Provisional
Probab=72.59 E-value=59 Score=28.22 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CccccChhhhHHHHhccCCCCCCchhhh----hhHHHHHHHHHhhHHhhcc--cccccc
Q 028859 86 GISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYI----LCQVLGSTLAAGTLRLLFQ--EKQDQF 158 (202)
Q Consensus 86 ~~al~~g~~v~~~i~~~~~i-SGahlNPAvTla~~l~g~~~~~~~~~Yi----~aQ~lGa~~a~~~~~~~~~--~~~~~~ 158 (202)
..++.+.+++.+++...+.. +| |-..+++ .+.++.+|.+..-.| ++-++|+++-+.+++..-. ......
T Consensus 70 l~~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~ 145 (285)
T PRK10805 70 VGGICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQW 145 (285)
T ss_pred HHHHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHH
Confidence 34555666666666654443 33 5555544 567888888777444 4455555554444332100 000110
Q ss_pred ----cc---cCCCcChHHHHHHHHHHHHHHHHHHHh
Q 028859 159 ----AG---TLPAGSNIQAFVMEFIITFYLMFVISG 187 (202)
Q Consensus 159 ----~~---t~p~~s~~~~f~~E~~~T~~L~~~il~ 187 (202)
.. .--+.+.++.|+-=+++.++.++.++.
T Consensus 146 ~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~ 181 (285)
T PRK10805 146 GLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWM 181 (285)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 111246788898999999999998874
No 32
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=70.81 E-value=69 Score=27.64 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=61.9
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhcc--c---cccc
Q 028859 83 SLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ--E---KQDQ 157 (202)
Q Consensus 83 ~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~--~---~~~~ 157 (202)
..+..++.+++++..+++..+..--+ |--........++++|.+.+--|+-=.+|=++|++++.+++. . ....
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 44455777777777777765543211 323333345578899988777776666676666666655541 1 1111
Q ss_pred ccc-----cC---CCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 158 FAG-----TL---PAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 158 ~~~-----t~---p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
... .. -+.+..+.|..-+++.++.++.+...
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~ 179 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMS 179 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11 12356788888888999888877654
No 33
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=59.72 E-value=1.1e+02 Score=25.93 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHHHhcCC-CccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhcc----cc-ccc
Q 028859 84 LPGISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ----EK-QDQ 157 (202)
Q Consensus 84 ~~~~al~~g~~v~~~i~~~~~i-SGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~----~~-~~~ 157 (202)
.+..++.+++++...+...+.. +| |-.......+.++.+|.+.+--|.-=++|=++|++++-.++. .. ...
T Consensus 57 ~l~~g~~F~~Gl~lIv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~ 133 (250)
T PF01226_consen 57 KLVGGLVFPIGLVLIVFLGGELFTG---NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPA 133 (250)
T ss_dssp HHHHHHHHTHHHHHHHHHT---TTT---TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHhcchhccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 3445666666666666664432 23 656555667788889887766665555555555555544332 11 011
Q ss_pred ccc-------cCCCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 158 FAG-------TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 158 ~~~-------t~p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
... .--+.+.++.|+.=+++.++.++.++..
T Consensus 134 ~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~ 171 (250)
T PF01226_consen 134 MGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLA 171 (250)
T ss_dssp HHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 1123477889999999999999988865
No 34
>PRK11562 nitrite transporter NirC; Provisional
Probab=53.52 E-value=1.5e+02 Score=25.57 Aligned_cols=99 Identities=9% Similarity=0.154 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhcCC-CccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccc------c-cccc
Q 028859 87 ISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE------K-QDQF 158 (202)
Q Consensus 87 ~al~~g~~v~~~i~~~~~i-SGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~------~-~~~~ 158 (202)
.++.+++++.+.++..+.. +| |=.......+.++.+|.+.+--|.-=++|=++|++++..++.. . ....
T Consensus 61 ~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~ 137 (268)
T PRK11562 61 MGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSI 137 (268)
T ss_pred HHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHH
Confidence 3555666666666554332 22 4333334566788888777766665555555555555443311 0 0111
Q ss_pred cc----cCCCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 159 AG----TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 159 ~~----t~p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
.. .--+.+.++.|+-=+++.++.++.+...
T Consensus 138 ~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~ 171 (268)
T PRK11562 138 VHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMA 171 (268)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0012367788888899999998888654
No 35
>PRK09713 focB putative formate transporter; Provisional
Probab=42.72 E-value=2.3e+02 Score=24.61 Aligned_cols=100 Identities=5% Similarity=-0.020 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhh----hhhHHHHHHHHHhhHHhhcc--cccccc-
Q 028859 86 GISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPY----ILCQVLGSTLAAGTLRLLFQ--EKQDQF- 158 (202)
Q Consensus 86 ~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Y----i~aQ~lGa~~a~~~~~~~~~--~~~~~~- 158 (202)
..++.+.+++.+.++..+..--+ |=...++ ...++++|.+.+-. +++-++|+++.+.+++.--. .+....
T Consensus 69 l~g~~F~vGLilIv~~g~ELfTg--N~~~~~~-~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~~ 145 (282)
T PRK09713 69 VGGLCFTLGFILLAVCGTSLFTS--SVMTVMA-KSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWG 145 (282)
T ss_pred HHHHHHHHHHHHHHHhCccccHH--HHHHHHH-HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhHH
Confidence 34555666666666654443222 2222222 45788887776643 44555665555554432110 011110
Q ss_pred --cc----cCCCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 159 --AG----TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 159 --~~----t~p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
.. .--+.+.++.|+--+++.++.++.++..
T Consensus 146 ~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~ 181 (282)
T PRK09713 146 VAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMS 181 (282)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1113477889999999999999988754
No 36
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=40.46 E-value=8.2 Score=28.54 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.2
Q ss_pred CCccccChhhhHHHHhccC
Q 028859 105 ISGAHFNPSVTIAHATCKR 123 (202)
Q Consensus 105 iSGahlNPAvTla~~l~g~ 123 (202)
-|+||+||.+.++-.+..+
T Consensus 7 Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRR 25 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHhcc
Confidence 3789999999999998654
No 37
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=27.08 E-value=1.9e+02 Score=22.76 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=17.9
Q ss_pred CCCchhhhhhHHHHHHHHHhhHHhh
Q 028859 126 WKQVPPYILCQVLGSTLAAGTLRLL 150 (202)
Q Consensus 126 ~~~~~~Yi~aQ~lGa~~a~~~~~~~ 150 (202)
+.....|..+-+.|+++|..+.+.+
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L 147 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKAL 147 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888777664
No 38
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=27.06 E-value=3.7e+02 Score=22.42 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=45.0
Q ss_pred ChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccc-----ccc-cccc-------cCCCcChHHHHHHHHHH
Q 028859 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE-----KQD-QFAG-------TLPAGSNIQAFVMEFII 177 (202)
Q Consensus 111 NPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~-----~~~-~~~~-------t~p~~s~~~~f~~E~~~ 177 (202)
|-.......+.++.+|.+.+--|.-=++|=++|+++.-.++.. .+. .... .--+.+..+.|+.=+++
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 4444444566788888877766666666666665555443310 111 1111 11124677788888888
Q ss_pred HHHHHHHHHh
Q 028859 178 TFYLMFVISG 187 (202)
Q Consensus 178 T~~L~~~il~ 187 (202)
.+++.+.+..
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 39
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.47 E-value=15 Score=32.40 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.9
Q ss_pred hcCCCccccChhhhHHHHhcc
Q 028859 102 LGHISGAHFNPSVTIAHATCK 122 (202)
Q Consensus 102 ~~~iSGahlNPAvTla~~l~g 122 (202)
.+.-+|||+.||+.++-.+..
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHh
Confidence 344589999999999988753
No 40
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=21.06 E-value=1.7e+02 Score=25.52 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCC-ccccChhh
Q 028859 56 AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHIS-GAHFNPSV 114 (202)
Q Consensus 56 ~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iS-GahlNPAv 114 (202)
+-=+.++++++++...+......++.......++.+|+........+...+ .++++|.+
T Consensus 276 a~Pl~~~~~~lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~l 335 (356)
T PRK15071 276 FQPLSVAVMMLMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVYGIPPII 335 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 334555666666554443332222212222344445555444443433332 35666654
Done!