Query 028859
Match_columns 202
No_of_seqs 163 out of 1418
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 100.0 9.9E-34 3.4E-38 246.4 14.9 177 17-193 14-199 (340)
2 3cn5_A Aquaporin; membrane pro 100.0 6.5E-34 2.2E-38 245.4 12.0 174 16-192 25-208 (304)
3 2w2e_A AQY1, aquaporin, aquapo 100.0 9.9E-33 3.4E-37 235.8 12.9 146 47-194 41-195 (279)
4 3gd8_A Aquaporin-4; proton exc 100.0 2.2E-32 7.5E-37 226.9 13.4 145 49-193 2-151 (223)
5 3llq_A Aquaporin Z 2; aquapori 100.0 3.2E-32 1.1E-36 229.8 13.5 147 48-195 27-184 (256)
6 2zz9_A Aquaporin-4; water tran 100.0 2.2E-31 7.4E-36 229.3 17.8 149 45-193 7-160 (301)
7 2o9g_A Aquaporin Z; integral m 100.0 1.3E-31 4.5E-36 223.7 13.3 145 49-194 3-160 (234)
8 1j4n_A Aquaporin 1; membrane p 100.0 9.6E-32 3.3E-36 228.9 12.4 149 44-193 4-162 (271)
9 2f2b_A Aquaporin AQPM; protein 100.0 4E-31 1.4E-35 222.3 14.7 147 49-195 3-171 (246)
10 1ldf_A Glycerol uptake facilit 100.0 2.7E-31 9.3E-36 227.2 13.0 145 48-192 5-170 (281)
11 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 3.4E-31 1.2E-35 224.9 13.5 148 44-194 5-155 (266)
12 2b6o_A Aquaporin-0, lens fiber 100.0 1.1E-30 3.8E-35 221.5 16.1 148 44-194 3-153 (263)
13 3c02_A Aquaglyceroporin; membr 100.0 8E-31 2.7E-35 221.9 10.7 145 48-193 7-159 (258)
14 2f2b_A Aquaporin AQPM; protein 99.7 2.4E-17 8.4E-22 138.2 9.3 99 49-152 142-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.6 4.4E-15 1.5E-19 125.6 11.9 101 49-154 126-226 (263)
16 2o9g_A Aquaporin Z; integral m 99.6 3.2E-15 1.1E-19 124.5 7.6 100 48-153 132-232 (234)
17 3d9s_A Aquaporin-5, AQP-5; aqu 99.6 8E-15 2.8E-19 124.2 10.0 101 49-154 128-229 (266)
18 3iyz_A Aquaporin-4; water tran 99.6 1.1E-14 3.8E-19 126.7 10.5 100 49-153 172-271 (340)
19 3gd8_A Aquaporin-4; proton exc 99.6 1.2E-14 4.2E-19 120.2 10.1 99 49-152 124-222 (223)
20 2w2e_A AQY1, aquaporin, aquapo 99.6 8.3E-15 2.8E-19 124.9 9.3 99 49-152 167-265 (279)
21 2zz9_A Aquaporin-4; water tran 99.6 1.1E-14 3.6E-19 125.3 9.9 99 49-152 133-231 (301)
22 3llq_A Aquaporin Z 2; aquapori 99.6 4.3E-15 1.5E-19 125.2 6.8 98 48-151 155-253 (256)
23 3cn5_A Aquaporin; membrane pro 99.6 2.9E-15 1E-19 129.0 5.9 106 49-154 183-290 (304)
24 1j4n_A Aquaporin 1; membrane p 99.5 3E-14 1E-18 121.0 9.3 99 50-153 137-235 (271)
25 1ldf_A Glycerol uptake facilit 99.5 6.8E-14 2.3E-18 119.3 10.5 102 49-153 144-257 (281)
26 3c02_A Aquaglyceroporin; membr 99.4 5.5E-14 1.9E-18 118.6 5.1 100 50-152 134-243 (258)
27 3kcu_A Probable formate transp 84.4 15 0.00051 30.7 11.7 101 85-188 69-182 (285)
28 4fc4_A Nitrite transporter NIR 52.5 95 0.0032 25.4 9.6 102 85-188 59-171 (261)
29 3kly_A Putative formate transp 47.8 1.2E+02 0.004 25.0 11.8 100 85-188 68-181 (280)
30 3s2u_A UDP-N-acetylglucosamine 43.2 4.5 0.00015 34.2 -0.3 19 105-123 11-29 (365)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=9.9e-34 Score=246.42 Aligned_cols=177 Identities=25% Similarity=0.331 Sum_probs=144.0
Q ss_pred eechhhh-hcCCCCCCCCCCCCCCCC---CCcccchHHHHHHHHHHHHHHHHHHHhhhhheecc--cCCCccCchHHHHH
Q 028859 17 KDCEDAI-QNCPSSAAPPPPPSCGTK---DSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIVSLPGISIV 90 (202)
Q Consensus 17 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~--~~~~~~~~~~~al~ 90 (202)
.+|..++ -+.++..+|++.|++... .++....+++|++++||+|||+|+|++|++++... ......+++.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala 93 (340)
T 3iyz_A 14 ASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLC 93 (340)
T ss_pred hhcChhhhcCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHH
Confidence 3455444 477888888888876422 23445568999999999999999999999876432 22233567889999
Q ss_pred HHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccc---cCCCcCh
Q 028859 91 WGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSN 167 (202)
Q Consensus 91 ~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~---t~p~~s~ 167 (202)
||+++++.+++++++||||+|||||+++++.|+++|.+++.||++|++||++|+.+++.++++......+ +.|..+.
T Consensus 94 ~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~ 173 (340)
T 3iyz_A 94 FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTA 173 (340)
T ss_pred HHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCH
Confidence 9999999999999999999999999999999999999999999999999999999999998754332222 2345688
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 168 IQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 168 ~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
.++|+.|+++||+|+++|+.+.++++
T Consensus 174 ~~~f~~E~i~Tf~Lv~~Ila~~d~~~ 199 (340)
T 3iyz_A 174 GHGLLVELIITFQLVFTIFASCDDKR 199 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999864443
No 2
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=6.5e-34 Score=245.44 Aligned_cols=174 Identities=25% Similarity=0.377 Sum_probs=124.5
Q ss_pred eeechhhhh---cCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhhheecc---cCCCccCchHHHH
Q 028859 16 FKDCEDAIQ---NCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL---NNEKIVSLPGISI 89 (202)
Q Consensus 16 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~---~~~~~~~~~~~al 89 (202)
.|++|++++ +.+|.++||+.|..+. .+..+.+++|++++||+||++|+|++++++.... ......+++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~ial 102 (304)
T 3cn5_A 25 SKEVSEEAQAHQHGKDYVDPPPAPFFDL--GELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAW 102 (304)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHH
T ss_pred HHHhhccccccccCCCccCCCcccccCc--cccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehh
Confidence 344555432 3477777777766653 3556678999999999999999999998875422 1223456778999
Q ss_pred HHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccccccccc--c--cCCCc
Q 028859 90 VWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA--G--TLPAG 165 (202)
Q Consensus 90 ~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~--~--t~p~~ 165 (202)
+||+++++.+++++++||+|+|||||+++++.|+++|.+.+.|+++|++|+++|+.+++.++++...... . ..+..
T Consensus 103 a~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~ 182 (304)
T 3cn5_A 103 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGY 182 (304)
T ss_dssp HHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTC
T ss_pred hhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999875422211 1 12345
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhccCC
Q 028859 166 SNIQAFVMEFIITFYLMFVISGVATDN 192 (202)
Q Consensus 166 s~~~~f~~E~~~T~~L~~~il~~~~~~ 192 (202)
+..++|+.|+++||+|+++|+.+. |+
T Consensus 183 s~~~~f~~E~i~TfiLv~~Il~~~-d~ 208 (304)
T 3cn5_A 183 NKGTALGAEIIGTFVLVYTVFSAT-DP 208 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTE-EE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhee-cC
Confidence 889999999999999999999764 43
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=9.9e-33 Score=235.75 Aligned_cols=146 Identities=20% Similarity=0.248 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhee-cc------cCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHH
Q 028859 47 SVPFMQKLMAEILGTYFMIFAGCASVVV-NL------NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHA 119 (202)
Q Consensus 47 ~~~~~~~~~~EfigT~llv~~~~~~~~~-~~------~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~ 119 (202)
.++.+|++++||+||++|++++++++.. +. ..+...+++.++++||+++++.+++++++||+|+|||||++++
T Consensus 41 ~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 120 (279)
T 2w2e_A 41 VRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALV 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHH
Confidence 3568899999999999999999886421 11 1222245678999999999999999999999999999999999
Q ss_pred hccCCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccccCCC--cChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 120 TCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPA--GSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 120 l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~t~p~--~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
+.|+++|.+.+.|+++|++|+++|+.+++.++++.. ...+.|. .+..++|+.|+++||+|+++|+.+++++++
T Consensus 121 ~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~--~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 121 LARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI--AFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC--CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc--eeeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999997543 2345553 588999999999999999999998766654
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.98 E-value=2.2e-32 Score=226.94 Aligned_cols=145 Identities=28% Similarity=0.406 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecc--cCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPW 126 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~--~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~ 126 (202)
+++|++++||+||++|++++++++.... .+....+++.++++||+++++.+++++++||+|+|||||+++++.|+++|
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 81 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCH
Confidence 4899999999999999999999876432 22334567889999999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhcccccccccc---cCCCcChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNIQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~---t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
.+.+.|+++|++|+++|+.+++.+++++.....+ +.|+.+..++|+.|+++||+|+++++.+.+++|
T Consensus 82 ~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~ 151 (223)
T 3gd8_A 82 AKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR 151 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998754332222 345568899999999999999999999854443
No 5
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.98 E-value=3.2e-32 Score=229.82 Aligned_cols=147 Identities=33% Similarity=0.654 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheeccc-CCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLN-NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPW 126 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~-~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~ 126 (202)
++++|++++||+||++|++++|+++..... ++...+++.++++||+++++.+++++++||+|+|||||+++++.|+++|
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 106 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPA 106 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCCH
Confidence 568999999999999999999998653322 2334567889999999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhcccccc---------cccccCCC-cChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLFQEKQD---------QFAGTLPA-GSNIQAFVMEFIITFYLMFVISGVATDNRAV 195 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~---------~~~~t~p~-~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~ 195 (202)
.+.+.|+++|++|+++|+.+++.++++... ....+.|. .+..++|+.|+++||+|+++|+.+. |+|+.
T Consensus 107 ~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~-d~~~~ 184 (256)
T 3llq_A 107 SSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGST-HGRVP 184 (256)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHH-STTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 999999999999999999999998853221 12235664 4889999999999999999999874 55543
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.97 E-value=2.2e-31 Score=229.31 Aligned_cols=149 Identities=30% Similarity=0.425 Sum_probs=125.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhheeccc--CCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc
Q 028859 45 YFSVPFMQKLMAEILGTYFMIFAGCASVVVNLN--NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK 122 (202)
Q Consensus 45 ~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~--~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g 122 (202)
..+.+++|++++||+|||+|+++++++++.... .....+++.++++||+++++++++++++||+|+|||||+++++.|
T Consensus 7 ~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~g 86 (301)
T 2zz9_A 7 VWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTR 86 (301)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHhc
Confidence 345679999999999999999999998764332 122356778999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccc-c--CCCcChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 123 RFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-T--LPAGSNIQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 123 ~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~-t--~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
+++|.+.+.|+++|++|+++|+.+++.++++......+ + .+..+..++|+.|+++||+|+++|+.+.+++|
T Consensus 87 ~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~ 160 (301)
T 2zz9_A 87 KISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKR 160 (301)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999764332222 2 23458899999999999999999999854333
No 7
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.97 E-value=1.3e-31 Score=223.72 Aligned_cols=145 Identities=35% Similarity=0.636 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeccc-CCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLN-NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~-~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~ 127 (202)
+++|++++||+||++|++++|+++..... ++...+++.++++||+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAK 82 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCHH
Confidence 37899999999999999999998755442 22334677899999999999999999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHhhHHhhcccccc-----------cccccCCC-cChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQD-----------QFAGTLPA-GSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 128 ~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~-----------~~~~t~p~-~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
+.+.|+++|++|+++|+.+++.++++... ....+.|. .+..++|+.|+++||+|+++++.+. |+|+
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~-d~~~ 160 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT-DKFA 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHT-STTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 99999999999999999999999874321 12335665 4889999999999999999999985 5543
No 8
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.97 E-value=9.6e-32 Score=228.93 Aligned_cols=149 Identities=26% Similarity=0.357 Sum_probs=125.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhheecc-------cCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhH
Q 028859 44 VYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL-------NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTI 116 (202)
Q Consensus 44 ~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~-------~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTl 116 (202)
+.++++++|++++||+||++|+|++|+++.... ..+...+++.++++||+++++.+++++++||+|+|||||+
T Consensus 4 e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTl 83 (271)
T 1j4n_A 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTL 83 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHH
Confidence 344567899999999999999999999865321 1122235778999999999999999999999999999999
Q ss_pred HHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccccccccc---ccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 117 AHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA---GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 117 a~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~---~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
++++.|+++|.+.+.||++|++|+++|+.+++.++++...... .+.|..+..++|+.|+++||+|+++|+.+. |+|
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~-d~~ 162 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRR 162 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT-CSS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc-ccc
Confidence 9999999999999999999999999999999999865433322 245666778999999999999999999975 443
No 9
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.97 E-value=4e-31 Score=222.26 Aligned_cols=147 Identities=33% Similarity=0.567 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecc--cC----------C-----CccCchHHHHHHHHHHHHHHHHhcCCCccccC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNL--NN----------E-----KIVSLPGISIVWGLVVMVLVYSLGHISGAHFN 111 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~--~~----------~-----~~~~~~~~al~~g~~v~~~i~~~~~iSGahlN 111 (202)
+++|++++||+||++|+|++++++.... .+ + ...+++.++++||+++++.+++++++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 3789999999999999999998765422 10 1 11234558999999999999999999999999
Q ss_pred hhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccccc---ccccccCC--CcChHHHHHHHHHHHHHHHHHHH
Q 028859 112 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQ---DQFAGTLP--AGSNIQAFVMEFIITFYLMFVIS 186 (202)
Q Consensus 112 PAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~---~~~~~t~p--~~s~~~~f~~E~~~T~~L~~~il 186 (202)
||||+++++.|+++|.+.+.|+++|++|+++|+.+++.+++++. .....+.| ..+..++++.|+++||+|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999997632 23445666 45889999999999999999999
Q ss_pred hhccCCCCc
Q 028859 187 GVATDNRAV 195 (202)
Q Consensus 187 ~~~~~~r~~ 195 (202)
.+++|+|+.
T Consensus 163 ~~~~~~~~~ 171 (246)
T 2f2b_A 163 GIAVDERAP 171 (246)
T ss_dssp HHTTSTTSC
T ss_pred EEecCCCCC
Confidence 987666543
No 10
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.97 E-value=2.7e-31 Score=227.22 Aligned_cols=145 Identities=32% Similarity=0.400 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~ 127 (202)
++++|++++||+|||+|++++++++......+...+.+.++++||+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 84 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKR 84 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHH
Confidence 35899999999999999999998765332222223445689999999999999999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHhhHHhhccccc-------------------ccccccCCC--cChHHHHHHHHHHHHHHHHHHH
Q 028859 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQ-------------------DQFAGTLPA--GSNIQAFVMEFIITFYLMFVIS 186 (202)
Q Consensus 128 ~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~-------------------~~~~~t~p~--~s~~~~f~~E~~~T~~L~~~il 186 (202)
+.+.|+++|++|+++|+.+++.++++.. ...+.|.|. .+..++|+.|+++||+|+++|+
T Consensus 85 ~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~il 164 (281)
T 1ldf_A 85 KVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLIL 164 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986431 112446665 4889999999999999999999
Q ss_pred hhccCC
Q 028859 187 GVATDN 192 (202)
Q Consensus 187 ~~~~~~ 192 (202)
.+.+++
T Consensus 165 ~~~d~~ 170 (281)
T 1ldf_A 165 ALTDDG 170 (281)
T ss_dssp HHHCTT
T ss_pred HHhccC
Confidence 986433
No 11
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.4e-31 Score=224.91 Aligned_cols=148 Identities=27% Similarity=0.399 Sum_probs=125.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccC
Q 028859 44 VYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKR 123 (202)
Q Consensus 44 ~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~ 123 (202)
+.++.+++|++++||+||++|+|++++++.... . ...+++.++++||+++++.+++++++||+|+|||||+++++.|+
T Consensus 5 e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~-~-~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 82 (266)
T 3d9s_A 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP-S-ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQ 82 (266)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-S-SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSS
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C-CCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhcC
Confidence 344567899999999999999999999875322 2 23467789999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccc-cC--CCcChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 124 FPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-TL--PAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 124 ~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~-t~--p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
++|.+.+.|+++|++|+++|+.+++.+++++.....+ +. +..+..++|+.|+++||+|+++|+.+. |+|+
T Consensus 83 ~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~-d~~~ 155 (266)
T 3d9s_A 83 ISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAST-DSRR 155 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH-CTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHh-cccC
Confidence 9999999999999999999999999999754332222 23 345889999999999999999999985 5443
No 12
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.97 E-value=1.1e-30 Score=221.50 Aligned_cols=148 Identities=26% Similarity=0.379 Sum_probs=125.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccC
Q 028859 44 VYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKR 123 (202)
Q Consensus 44 ~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~ 123 (202)
+.++.+++|.+++||+|||+|+++++++.... .+...+++.++++||+++++.+++++++||+|+|||||+++++.|+
T Consensus 3 e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~--~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~ 80 (263)
T 2b6o_A 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQ 80 (263)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcC
Confidence 34556799999999999999999999987543 2223456778999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccc---cCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 028859 124 FPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (202)
Q Consensus 124 ~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~---t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~ 194 (202)
++|.++++|+++|++|+++|+.+++.+++++.....+ +.|+.+..++|+.|+++||+|+++++.+. |+|+
T Consensus 81 ~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~-d~~~ 153 (263)
T 2b6o_A 81 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY-DERR 153 (263)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS-CTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh-cccC
Confidence 9999999999999999999999999999764433332 34566889999999999999999999984 5443
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.97 E-value=8e-31 Score=221.86 Aligned_cols=145 Identities=26% Similarity=0.426 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~ 127 (202)
++++|++++||+||++|++++|+++......+...+++.++++||+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 86 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLK 86 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHH
Confidence 45899999999999999999998765432222235677899999999999999999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHhhHHhhcccccccc--------cccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQDQF--------AGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNR 193 (202)
Q Consensus 128 ~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~--------~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r 193 (202)
+.+.|+++|++|+++|+.+++.+++++.... .+.....+..++|+.|+++||+|+++++.+. |+|
T Consensus 87 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~-d~~ 159 (258)
T 3c02_A 87 KIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVV-DEN 159 (258)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence 9999999999999999999999987532211 0111223456799999999999999999985 544
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.71 E-value=2.4e-17 Score=138.22 Aligned_cols=99 Identities=26% Similarity=0.417 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHh-----ccC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHAT-----CKR 123 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l-----~g~ 123 (202)
+.++.++.|+++|++|++++++....++.. ....++.+|+.+...+++.+++||+|+|||||+++++ .++
T Consensus 142 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~ 216 (246)
T 2f2b_A 142 SYWQAMLAEVVGTFLLMITIMGIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGT 216 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHHheeeEEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCC
Confidence 478999999999999999988764322211 1236888999999999999999999999999999998 335
Q ss_pred CCCCCchhhhhhHHHHHHHHHhhHHhhcc
Q 028859 124 FPWKQVPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 124 ~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
..|.+.|+||++|++|+++|+++++.++.
T Consensus 217 ~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 217 DLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp CCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 67888999999999999999999888764
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.61 E-value=4.4e-15 Score=125.64 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++||+|++++++....+.... .. ..++.+|+.+.+...+.++.||+.+||||+|++.+... .|.+
T Consensus 126 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~--~~--~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~ 200 (263)
T 2b6o_A 126 SVGQATIVEIFLTLQFVLCIFATYDERRNGR--LG--SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-NFTN 200 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCTTSCSS--CC--CHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-CCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--cc--cHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-Cccc
Confidence 4789999999999999999887632111111 11 25788899999999999999999999999999999766 7999
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcccc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQEK 154 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~~~ 154 (202)
+|+||++|++|+++|+++++.++.++
T Consensus 201 ~Wvy~vgP~~Ga~la~~~y~~l~~~~ 226 (263)
T 2b6o_A 201 HWVYWVGPVIGAGLGSLLYDFLLFPR 226 (263)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999887543
No 16
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.57 E-value=3.2e-15 Score=124.51 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccC-CCC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKR-FPW 126 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~-~~~ 126 (202)
.+..+.++.|+++|++|+++.+..... + .. ....++.+|+.+....++.++.||+.+||||+|++.+..+ ..|
T Consensus 132 ~~~~~~~~~E~i~T~~Lv~~i~~~~d~-~-~~----~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~ 205 (234)
T 2o9g_A 132 YSMLSALVVELVLSAGFLLVIHGATDK-F-AP----AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWAL 205 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTST-T-SC----TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCC-C-Cc----cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCC
Confidence 358899999999999999998876431 1 11 1136888899999999999999999999999999999743 456
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhccc
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLFQE 153 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~~~ 153 (202)
.++|+||++|++|+++|+++++.++.+
T Consensus 206 ~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 206 EQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 699999999999999999999988753
No 17
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=124.20 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++||+|++++++....++... .. ..++.+|+.+.+.....++.||+.+||||+|++.+... .|.+
T Consensus 128 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~--~~--~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~ 202 (266)
T 3d9s_A 128 TQGQAMVVELILTFQLALCIFASTDSRRTSP--VG--SPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-RFSP 202 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCTTCCSC--CC--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-CCCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCCCc--cc--hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-Cccc
Confidence 4789999999999999999887643222111 11 25788899999988999999999999999999999765 7888
Q ss_pred -chhhhhhHHHHHHHHHhhHHhhcccc
Q 028859 129 -VPPYILCQVLGSTLAAGTLRLLFQEK 154 (202)
Q Consensus 129 -~~~Yi~aQ~lGa~~a~~~~~~~~~~~ 154 (202)
+|+||++|++|+++|+++++.++.++
T Consensus 203 ~~Wvy~vgP~~Ga~la~~~y~~l~~~~ 229 (266)
T 3d9s_A 203 AHWVFWVGPIVGAVLAAILYFYLLFPN 229 (266)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CEeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999887543
No 18
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.56 E-value=1.1e-14 Score=126.67 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++||+|+++++.....+.... .. ..++.+|+.+.+.....++.||+.+||||+|++.+... .|.+
T Consensus 172 s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~--~~--~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~w~~ 246 (340)
T 3iyz_A 172 TAGHGLLVELIITFQLVFTIFASCDDKRTDV--TG--SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 246 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCccCCc--cc--chhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-CCCc
Confidence 5788999999999999999887643222111 11 24778888888777778899999999999999999765 6999
Q ss_pred chhhhhhHHHHHHHHHhhHHhhccc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQE 153 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~~ 153 (202)
+|+||++|++|+++|+++++.++.+
T Consensus 247 ~WVywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 247 HWIYWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred EeehhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988753
No 19
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=120.16 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++||+|++..+.....++... .. ..++.+|+.+.+.....++.||+.+||||+|++.+... .|.+
T Consensus 124 s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~--~~--~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~w~~ 198 (223)
T 3gd8_A 124 TAGHGLLVELIITFQLVFTIFASCDSKRTDV--TG--SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 198 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC--CS--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-CCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccccCCc--cC--CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-CCCc
Confidence 4788999999999999998887643222111 11 24778888887777777789999999999999999865 7999
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.++.
T Consensus 199 ~Wvy~vgP~~Ga~la~~~y~~~~~ 222 (223)
T 3gd8_A 199 HWIYWVGPIIGAVLAGGLYEYVFC 222 (223)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988763
No 20
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.56 E-value=8.3e-15 Score=124.87 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++||+|++++++....+.. . ....++.+|+.+.+..++.++.||+.+||||+|++.+....-+.+
T Consensus 167 s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~-~----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~ 241 (279)
T 2w2e_A 167 SRTRGLFLEAFGTAILCLTVLMLAVEKHR-A----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNY 241 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCST-T----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCC-C----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhh
Confidence 47899999999999999998876432221 1 123688889999999999999999999999999999987655568
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.+..
T Consensus 242 ~WVy~vgPiiGa~la~~ly~~l~~ 265 (279)
T 2w2e_A 242 HWIYWLGPILGAFLAYSIWQMWKW 265 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988764
No 21
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.56 E-value=1.1e-14 Score=125.33 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~ 128 (202)
+..+.++.|+++||+|++++++....++... .+ ..++.+|+.+.+.....++.||+.+||||+|++.+... .|.+
T Consensus 133 s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~--~~--~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~w~~ 207 (301)
T 2zz9_A 133 TAGHGLLVELIITFQLVFTIFASCDDKRTDV--TG--SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 207 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCSSSSCC--SS--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--cc--hHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-CCcc
Confidence 5789999999999999999887643222111 11 25788899988888888899999999999999999865 7999
Q ss_pred chhhhhhHHHHHHHHHhhHHhhcc
Q 028859 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 129 ~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
+|+||++|++|+++|+++++.++.
T Consensus 208 ~WVy~vgPiiGailaa~ly~~l~~ 231 (301)
T 2zz9_A 208 HWIYWVGPIIGAVLAGALYEYVFC 231 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeeeeeHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998874
No 22
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.55 E-value=4.3e-15 Score=125.16 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc-CCCC
Q 028859 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK-RFPW 126 (202)
Q Consensus 48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g-~~~~ 126 (202)
.+..+.++.|+++||+|+++.++....+. .. ...++.+|+.+.+..++.++.||+.+||||+|++.+.. ...|
T Consensus 155 ~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~--~~----~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~ 228 (256)
T 3llq_A 155 YSLVSALLIEIILTAFFLIVILGSTHGRV--PA----GFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWAL 228 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSTTS--CT----TCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCC--Cc----cchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcc
Confidence 35889999999999999998887543221 11 13588889999999999999999999999999999864 3446
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhc
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLF 151 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~ 151 (202)
.+.|+||++|++|+++|+++++.+.
T Consensus 229 ~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 229 QQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeeeeeHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999998875
No 23
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.55 E-value=2.9e-15 Score=129.00 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhc--cCCCC
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATC--KRFPW 126 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~--g~~~~ 126 (202)
+..+.++.|+++||+|+++++.....++...........++.+|+.+++..++.++.||+.+||||+|++++. +...|
T Consensus 183 s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w 262 (304)
T 3cn5_A 183 NKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVW 262 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCc
Confidence 4789999999999999999885533222111110011357888999999999999999999999999999997 22368
Q ss_pred CCchhhhhhHHHHHHHHHhhHHhhcccc
Q 028859 127 KQVPPYILCQVLGSTLAAGTLRLLFQEK 154 (202)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~ 154 (202)
.++|+||++|++|+++|+++++.++.++
T Consensus 263 ~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 263 DDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999887643
No 24
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.52 E-value=3e-14 Score=120.99 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCc
Q 028859 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQV 129 (202)
Q Consensus 50 ~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~ 129 (202)
..+.++.|+++||+|++++++....++... ....++.+|+.+.+.....++.||+.+||||+|++.+... .|.++
T Consensus 137 ~~~~~~~E~i~T~~Lv~~i~~~~d~~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~~~ 211 (271)
T 1j4n_A 137 SGQGLGIEIIGTLQLVLCVLATTDRRRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQDH 211 (271)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHTCSSCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCcce
Confidence 456789999999999998887643222111 1125788899998777777789999999999999998765 78999
Q ss_pred hhhhhhHHHHHHHHHhhHHhhccc
Q 028859 130 PPYILCQVLGSTLAAGTLRLLFQE 153 (202)
Q Consensus 130 ~~Yi~aQ~lGa~~a~~~~~~~~~~ 153 (202)
|+||++|++|+++|+++++.++.+
T Consensus 212 wv~~vgP~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 212 WIFWVGPFIGAALAVLIYDFILAP 235 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTSC
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999988754
No 25
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.51 E-value=6.8e-14 Score=119.34 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhcc------
Q 028859 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCK------ 122 (202)
Q Consensus 49 ~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g------ 122 (202)
+..+.++.|+++||+|++++++....+... ......++.+|+.+....++.++.||+.+||||+|++.+..
T Consensus 144 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~---~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g 220 (281)
T 1ldf_A 144 NFVQAFAVEMVITAILMGLILALTDDGNGV---PRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWG 220 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCTTSSS---CCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCCC---cccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccc
Confidence 588999999999999999988764322111 11123688899999999999999999999999999999863
Q ss_pred CCC------CCCchhhhhhHHHHHHHHHhhHHhhccc
Q 028859 123 RFP------WKQVPPYILCQVLGSTLAAGTLRLLFQE 153 (202)
Q Consensus 123 ~~~------~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~ 153 (202)
... +.++|+||++|++|+++|+++++.++.+
T Consensus 221 ~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~ 257 (281)
T 1ldf_A 221 NVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257 (281)
T ss_dssp THHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred cccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCc
Confidence 111 2279999999999999999999988753
No 26
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.44 E-value=5.5e-14 Score=118.56 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHH-HHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccC-----
Q 028859 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGI-SIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKR----- 123 (202)
Q Consensus 50 ~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~-al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~----- 123 (202)
..+.++.|+++||+|+++++.....++... ..... ++.+|+.+....++.++.||+.+||||+|++++...
T Consensus 134 ~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~---~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~ 210 (258)
T 3c02_A 134 LTGAFFNELILTGILLLVILVVVDENICGK---FHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGK 210 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHCS---CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccCCc---ccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccc
Confidence 456999999999999999887653221101 11134 888999999999999999999999999999998642
Q ss_pred CCC----CCchhhhhhHHHHHHHHHhhHHhhcc
Q 028859 124 FPW----KQVPPYILCQVLGSTLAAGTLRLLFQ 152 (202)
Q Consensus 124 ~~~----~~~~~Yi~aQ~lGa~~a~~~~~~~~~ 152 (202)
..| .++|+||++|++|+++|+++++.++.
T Consensus 211 ~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~ 243 (258)
T 3c02_A 211 DTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVIC 243 (258)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cccccCCceeehHHHHHHHHHHHHHHHHHHHhc
Confidence 234 45999999999999999999988775
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=84.39 E-value=15 Score=30.68 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhc--ccc----cccc
Q 028859 85 PGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF--QEK----QDQF 158 (202)
Q Consensus 85 ~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~--~~~----~~~~ 158 (202)
+..++.+.+++..++...+..--+ |--.++ ..+.++++|.+.+--|.-=++|=++|++++-+++ ... +...
T Consensus 69 ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~~-a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~ 145 (285)
T 3kcu_A 69 LVGGICFSLGLILCVVCGADLFTS--TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQW 145 (285)
T ss_dssp HHHHHHHTHHHHHHHHHTCCCTTT--THHHHH-HHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchHH
Confidence 445677777777777776554333 322333 3457888887665555544455555544443331 110 1001
Q ss_pred cc-------cCCCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 159 AG-------TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 159 ~~-------t~p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
.. .--+.+..+.|+-=+++.++.++.+...
T Consensus 146 ~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~ 182 (285)
T 3kcu_A 146 GLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1123477889999999999999988764
No 28
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=52.50 E-value=95 Score=25.36 Aligned_cols=102 Identities=8% Similarity=0.077 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhccc-----ccc--c
Q 028859 85 PGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE-----KQD--Q 157 (202)
Q Consensus 85 ~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~-----~~~--~ 157 (202)
+..++.+++++..++...+..--+ |-.......+.++++|.+.+--|.-=++|=++|++++-+++.. .+. .
T Consensus 59 ll~g~~F~vGl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~~ 136 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIAGSELFTG--HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTS 136 (261)
T ss_dssp HHHHHHTTHHHHHHHHTCCCCHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTTS
T ss_pred HHHHHHHHHHHHHHHHcCCccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 444565666665555543322111 4333333455688888877666655455555554444333211 000 0
Q ss_pred cc-ccC---CCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 158 FA-GTL---PAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 158 ~~-~t~---p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
.. ... -+.+..+.|+-=+++.++.++.+...
T Consensus 137 ~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~ 171 (261)
T 4fc4_A 137 IVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMA 171 (261)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 01256788888888898888877654
No 29
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=47.77 E-value=1.2e+02 Score=25.05 Aligned_cols=100 Identities=11% Similarity=0.203 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhcc--cc----ccc
Q 028859 85 PGISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ--EK----QDQ 157 (202)
Q Consensus 85 ~~~al~~g~~v~~~i~~~~~i-SGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~--~~----~~~ 157 (202)
+..++.+.+++..++...+.. +|-.+ .++ ..+.++++|.+.+--|.-=++|=++|++++-+++. .. +..
T Consensus 68 ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~~-~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 143 (280)
T 3kly_A 68 LLGGLAFSLGLILVVITGGELFTSSVL---ILV-AKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQ 143 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTTCC---CCS-SSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHccccccccchH---HHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchH
Confidence 445677777777777776654 33222 232 24568889988877766666666666655544421 10 100
Q ss_pred ccc-------cCCCcChHHHHHHHHHHHHHHHHHHHhh
Q 028859 158 FAG-------TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (202)
Q Consensus 158 ~~~-------t~p~~s~~~~f~~E~~~T~~L~~~il~~ 188 (202)
... .--+.+..+.|+-=+++.++.++.+...
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~ 181 (280)
T 3kly_A 144 LGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMT 181 (280)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 1123477889999999999999988764
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=43.23 E-value=4.5 Score=34.23 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCccccChhhhHHHHhccC
Q 028859 105 ISGAHFNPSVTIAHATCKR 123 (202)
Q Consensus 105 iSGahlNPAvTla~~l~g~ 123 (202)
=||||++||++++-.+..+
T Consensus 11 GTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 11 GTGGHVFPALACAREFQAR 29 (365)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 3789999999999888643
Done!