BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028860
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 111/186 (59%), Gaps = 4/186 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++  + ++   +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGST-DQRDLLYTVKRSSXLQLKTKLDVFLGHNK--DEKR 143

Query: 135 PDFYVTGSFTSLSFKVYRGKTVLCQVANH-NYTWGSICKGKENFKVRVHPEVDYSFITAL 193
            DF V GS+   S  VY G++       H  +T  S+  GK+NF V V+P VDY+FI +L
Sbjct: 144 CDFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASL 203

Query: 194 LVILEE 199
           +VIL++
Sbjct: 204 VVILDD 209


>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
 pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
 pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
           Complex With 2- Hydroxyquinoline
          Length = 355

 Score = 26.9 bits (58), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 93  HPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPD-FYVT 140
           HPG SS       F+ E+ S LH+KT     LP+ N I    P+ FY T
Sbjct: 134 HPGSSSTVEV-FKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYAT 181


>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
           Kinase From Aquifex Aeolicus, A Chemolithotrophic
           Thermophile
 pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
           Kinase From Aquifex Aeolicus, A Chemolithotrophic
           Thermophile
          Length = 546

 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 67  VMRDPAGIPLLTMR-QKSFKWRKEW 90
           V+RDP  +PL  MR ++ +KW  E+
Sbjct: 78  VLRDPKNVPLAIMRVEEVYKWNLEY 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,519,596
Number of Sequences: 62578
Number of extensions: 262399
Number of successful extensions: 613
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 6
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)