Query 028860
Match_columns 202
No_of_seqs 117 out of 673
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 3.3E-42 7E-47 273.4 18.4 181 14-196 2-187 (187)
2 COG4894 Uncharacterized conser 100.0 1.7E-35 3.7E-40 218.5 8.6 153 25-201 5-157 (159)
3 PF03803 Scramblase: Scramblas 99.7 2.9E-15 6.2E-20 121.6 19.8 164 25-200 21-217 (221)
4 COG4894 Uncharacterized conser 98.4 3.8E-07 8.3E-12 68.2 4.9 72 20-93 24-95 (159)
5 PF04525 Tub_2: Tubby C 2; In 98.2 1.3E-05 2.9E-10 63.4 9.1 98 22-124 35-143 (187)
6 KOG0621 Phospholipid scramblas 98.0 0.00028 6.1E-09 59.5 14.0 151 38-200 97-277 (292)
7 PF03803 Scramblase: Scramblas 97.1 0.0043 9.4E-08 50.1 9.2 66 41-112 77-149 (221)
8 KOG0621 Phospholipid scramblas 77.8 23 0.0005 30.1 9.0 51 61-114 96-153 (292)
9 PF04790 Sarcoglycan_1: Sarcog 62.8 26 0.00057 29.3 6.2 49 26-74 103-154 (264)
10 PF13860 FlgD_ig: FlgD Ig-like 61.4 16 0.00036 24.4 3.9 16 65-80 28-43 (81)
11 KOG3950 Gamma/delta sarcoglyca 59.4 10 0.00022 31.3 3.0 33 41-73 140-173 (292)
12 COG4998 Predicted endonuclease 58.5 27 0.00059 27.2 5.0 38 144-187 21-59 (209)
13 PF01167 Tub: Tub family; Int 57.2 58 0.0013 26.9 7.2 75 75-154 8-88 (246)
14 PF02974 Inh: Protease inhibit 56.4 58 0.0013 22.8 6.2 32 63-97 61-92 (99)
15 PF01947 DUF98: Protein of unk 54.3 17 0.00036 27.6 3.3 27 139-166 116-142 (149)
16 COG1021 EntE Peptide arylation 49.2 11 0.00023 33.9 1.7 49 32-80 334-384 (542)
17 PF06903 VirK: VirK protein; 48.8 80 0.0017 22.4 5.8 17 8-24 15-31 (100)
18 PF07680 DoxA: TQO small subun 46.7 51 0.0011 24.7 4.8 43 41-89 32-74 (133)
19 PRK15393 NUDIX hydrolase YfcD; 46.3 68 0.0015 24.8 5.8 55 41-96 11-73 (180)
20 PF09008 Head_binding: Head bi 45.4 1E+02 0.0023 22.2 5.9 43 33-81 63-105 (114)
21 PF12396 DUF3659: Protein of u 45.1 82 0.0018 20.4 5.0 39 43-81 14-58 (64)
22 PF10830 DUF2553: Protein of u 44.8 54 0.0012 22.0 4.1 23 138-160 9-31 (76)
23 PF09629 YorP: YorP protein; 41.4 95 0.0021 19.9 5.1 52 5-57 4-59 (71)
24 PRK12813 flgD flagellar basal 41.2 33 0.00071 28.0 3.3 15 65-79 127-141 (223)
25 PF09000 Cytotoxic: Cytotoxic; 39.9 88 0.0019 21.5 4.7 35 43-81 34-68 (85)
26 PRK12816 flgG flagellar basal 39.5 38 0.00083 28.2 3.6 39 39-78 100-138 (264)
27 PRK12691 flgG flagellar basal 37.9 54 0.0012 27.2 4.2 39 39-78 100-138 (262)
28 PRK12640 flgF flagellar basal 36.7 38 0.00082 28.0 3.1 39 39-78 85-123 (246)
29 PF15529 Toxin_49: Putative to 35.2 45 0.00097 23.2 2.7 18 41-58 31-48 (89)
30 PRK12633 flgD flagellar basal 34.8 48 0.001 27.1 3.3 18 63-80 130-147 (230)
31 PRK12817 flgG flagellar basal 34.6 52 0.0011 27.3 3.6 39 39-78 96-134 (260)
32 TIGR02150 IPP_isom_1 isopenten 34.1 91 0.002 23.5 4.7 53 42-94 1-61 (158)
33 PRK12818 flgG flagellar basal 33.4 55 0.0012 27.1 3.5 39 39-78 100-138 (256)
34 PRK12694 flgG flagellar basal 33.0 51 0.0011 27.4 3.3 39 39-78 100-138 (260)
35 TIGR02488 flgG_G_neg flagellar 32.5 49 0.0011 27.4 3.1 39 39-78 98-136 (259)
36 PRK06655 flgD flagellar basal 31.3 78 0.0017 25.8 4.0 18 63-80 127-144 (225)
37 PF12690 BsuPI: Intracellular 30.9 39 0.00085 22.9 1.9 16 41-56 27-42 (82)
38 PF11141 DUF2914: Protein of u 29.5 78 0.0017 20.4 3.1 18 63-80 45-62 (66)
39 cd03676 Nudix_hydrolase_3 Memb 29.4 2.2E+02 0.0047 21.7 6.2 61 37-97 2-73 (180)
40 PRK12693 flgG flagellar basal 29.0 74 0.0016 26.3 3.6 39 39-78 100-138 (261)
41 PF08829 AlphaC_N: Alpha C pro 28.6 25 0.00053 27.5 0.6 32 41-72 92-123 (194)
42 smart00634 BID_1 Bacterial Ig- 28.1 1.9E+02 0.0042 19.5 5.1 11 42-52 24-34 (92)
43 PF13511 DUF4124: Domain of un 28.0 50 0.0011 20.4 1.9 16 41-56 15-30 (60)
44 PF11906 DUF3426: Protein of u 27.7 96 0.0021 23.0 3.8 35 47-81 64-106 (149)
45 PF01167 Tub: Tub family; Int 27.5 1.6E+02 0.0034 24.3 5.3 39 146-193 199-242 (246)
46 PF11191 DUF2782: Protein of u 27.1 88 0.0019 22.1 3.3 31 63-93 70-103 (105)
47 PRK10893 lipopolysaccharide ex 27.0 2.8E+02 0.006 21.9 6.4 53 23-82 38-100 (192)
48 PRK12634 flgD flagellar basal 26.8 98 0.0021 25.2 3.9 17 64-80 124-140 (221)
49 PF05171 HemS: Haemin-degradin 25.5 2.4E+02 0.0052 20.5 5.5 67 11-82 36-114 (129)
50 cd00028 B_lectin Bulb-type man 25.3 2.5E+02 0.0053 19.8 5.6 7 67-73 68-74 (116)
51 PF08269 Cache_2: Cache domain 25.3 15 0.00032 25.2 -1.0 37 41-77 58-94 (95)
52 COG4786 FlgG Flagellar basal b 25.1 98 0.0021 26.0 3.6 39 39-78 100-138 (265)
53 COG5436 Predicted integral mem 24.3 3.4E+02 0.0074 21.0 6.9 16 43-58 94-109 (182)
54 PF11589 DUF3244: Domain of un 23.9 1.8E+02 0.0038 20.4 4.4 42 41-82 51-94 (106)
55 smart00108 B_lectin Bulb-type 23.4 2.7E+02 0.0058 19.5 5.7 8 42-49 66-73 (114)
56 PLN02552 isopentenyl-diphospha 23.1 2.9E+02 0.0063 22.9 6.0 57 40-96 23-92 (247)
57 PRK12692 flgG flagellar basal 22.8 86 0.0019 26.1 2.9 38 39-77 100-137 (262)
58 PF05593 RHS_repeat: RHS Repea 22.8 1.5E+02 0.0033 16.5 4.4 29 45-76 1-29 (38)
59 TIGR03784 marine_sortase sorta 22.7 1.5E+02 0.0032 23.1 4.0 35 61-95 110-145 (174)
60 PF12142 PPO1_DWL: Polyphenol 21.9 74 0.0016 19.9 1.8 12 41-52 11-22 (54)
61 PF02974 Inh: Protease inhibit 21.9 2.8E+02 0.0061 19.2 5.9 56 17-77 41-96 (99)
62 PRK12819 flgG flagellar basal 21.7 1.6E+02 0.0034 24.4 4.2 36 41-77 100-135 (257)
63 TIGR00156 conserved hypothetic 21.4 1.8E+02 0.0039 21.6 4.0 22 63-84 72-93 (126)
64 PRK12641 flgF flagellar basal 21.2 1E+02 0.0023 25.4 3.1 37 39-77 83-119 (252)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=3.3e-42 Score=273.39 Aligned_cols=181 Identities=32% Similarity=0.628 Sum_probs=109.4
Q ss_pred eEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEec-cCCCcCCeEEEECCCCCeEEEEEecccccCCeEEE
Q 028860 14 NIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG-SLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTV 92 (202)
Q Consensus 14 ~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g-~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i 92 (202)
+||+++||++.|++|+|++|.++++.++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|+++.++++++|++
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i 81 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI 81 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence 57799999999999999999888876799999999999999999 89999999999999999999999999999999999
Q ss_pred EeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCc---CCCCCCeEEEEeeecCceeEEE-ECCeEEEEEEeeeeccc
Q 028860 93 HPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNI---IGKRAPDFYVTGSFTSLSFKVY-RGKTVLCQVANHNYTWG 168 (202)
Q Consensus 93 ~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~---~~~~~~~~~v~G~~~~~~~~I~-~~~~~va~v~~~~~~~~ 168 (202)
|.+++.++ ++++|+||+.+....+.++.+|+..... .+...++|+|+|||++++|+|+ .+|++||+|++++ ..+
T Consensus 82 ~~~~~~~~-~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~-~~k 159 (187)
T PF04525_consen 82 YRGGGSEG-KKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKY-SSK 159 (187)
T ss_dssp EETT---G-GGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE------
T ss_pred EECCCCcc-CceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEeccc-cee
Confidence 99998755 6789999998777778888898863211 0123369999999999999999 5699999995444 477
Q ss_pred eeeeceeeEEEEEcCCCCHHHHHHHHhh
Q 028860 169 SICKGKENFKVRVHPEVDYSFITALLVI 196 (202)
Q Consensus 169 ~~~~~~d~Y~v~V~pg~D~~li~al~v~ 196 (202)
+++.++|+|.|+|+||+|++|++|||+|
T Consensus 160 ~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 160 KWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp -----B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred eEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 8999999999999999999999999986
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=218.50 Aligned_cols=153 Identities=18% Similarity=0.374 Sum_probs=136.0
Q ss_pred cEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEecccccCCeEEEEeCCCCCCCCce
Q 028860 25 TMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDI 104 (202)
Q Consensus 25 ~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~~~~~~~~ 104 (202)
+.+|.++||+.++++ +|.|+|++|+.+|+|+|+.+++++.++|.|++|.+|.+|+++.++++|+|+|.++++.
T Consensus 5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~------ 77 (159)
T COG4894 5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT------ 77 (159)
T ss_pred hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC------
Confidence 467899999999988 9999999999999999999999999999999999999999999999999999999864
Q ss_pred EEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEeeecCceeEEEECCeEEEEEEeeeeccceeeeceeeEEEEEcCC
Q 028860 105 LFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPE 184 (202)
Q Consensus 105 l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~va~v~~~~~~~~~~~~~~d~Y~v~V~pg 184 (202)
++.++|+ ++|+...... +..+|+++||+|+.+|++.+|++++|+|+|+ |++++|+|.|+|+|+
T Consensus 78 ~~~vrKK--------~tf~Rdk~e~---d~~~~eihGNi~d~efkl~dg~~~~aeVsKk------wf~~rdTY~l~vapd 140 (159)
T COG4894 78 VCEVRKK--------VTFSRDKFEI---DGLNWEIHGNIWDDEFKLTDGENVRAEVSKK------WFSWRDTYHLQVAPD 140 (159)
T ss_pred EEEEEEE--------EEEEeeeEEE---cCCCeEEecceeceEEEEecCCceehhheee------eEeccceEEEEEcCc
Confidence 7777653 3444333322 2247999999999999999999999999777 688999999999999
Q ss_pred CCHHHHHHHHhhhhccc
Q 028860 185 VDYSFITALLVILEENE 201 (202)
Q Consensus 185 ~D~~li~al~v~lD~~~ 201 (202)
.|..+|+++|+++|+++
T Consensus 141 e~a~lii~i~VaLD~v~ 157 (159)
T COG4894 141 EDALLIIAIAVALDMVL 157 (159)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999985
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.71 E-value=2.9e-15 Score=121.63 Aligned_cols=164 Identities=16% Similarity=0.260 Sum_probs=129.3
Q ss_pred cEEEEEEEEeeeE-------eCCCEEEEcCCCCEEEEEeccCC---------CcCCeEEEECCCCCeEEEEEeccccc--
Q 028860 25 TMEMLVKKRIQGM-------SNAHYDVFDISGNLLLQVDGSLW---------KFQKKRVMRDPAGIPLLTMRQKSFKW-- 86 (202)
Q Consensus 25 ~~~l~ik~k~~~~-------~~~~f~V~D~~G~~v~~V~g~~~---------s~~~~~~l~D~~G~~L~~i~~k~~s~-- 86 (202)
.-.++|+|+.-.+ ..+.|.|+|.+|+.+|.+.+..- .-+-++.++|.+|+++++++|..-..
T Consensus 21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C 100 (221)
T PF03803_consen 21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC 100 (221)
T ss_pred CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence 4677888875532 35699999999999999876421 12556899999999999999975322
Q ss_pred ----CCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEee------ecCceeEEEEC-Ce
Q 028860 87 ----RKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS------FTSLSFKVYRG-KT 155 (202)
Q Consensus 87 ----~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~------~~~~~~~I~~~-~~ 155 (202)
..+.+|+.+. .++|++|+++. ...+.+++|+.+++. .-+.|+|. +.+++|.|++. |+
T Consensus 101 ~~~~~~~~~V~~p~-----g~~iG~I~q~~-~~~~~~f~I~d~~~~------~~~~I~gp~~~~~~~~~~~F~I~~~~~~ 168 (221)
T PF03803_consen 101 CPCCLQEMEVESPP-----GNLIGSIRQPF-SCCRPNFDIFDANGN------PIFTIKGPCCCCSCCCDWEFEIKDPNGQ 168 (221)
T ss_pred ccccceeEEEecCC-----CcEEEEEEEcC-cccceEEEEEECCCc------eEEEEeCCcceeccccceeeeeecccCc
Confidence 3677776666 46899999763 335788999987753 36778886 46789999994 99
Q ss_pred EEEEEEeeeeccc-eeeeceeeEEEEEcCCCC---HHHHHHHHhhhhcc
Q 028860 156 VLCQVANHNYTWG-SICKGKENFKVRVHPEVD---YSFITALLVILEEN 200 (202)
Q Consensus 156 ~va~v~~~~~~~~-~~~~~~d~Y~v~V~pg~D---~~li~al~v~lD~~ 200 (202)
.||+|+|+|.++. +.++..|+|.|+..+..| .++++|+++.||.+
T Consensus 169 ~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~ 217 (221)
T PF03803_consen 169 EVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYM 217 (221)
T ss_pred EEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999998876 678899999999999886 59999999999975
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3.8e-07 Score=68.22 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=65.1
Q ss_pred ccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEecccccCCeEEEE
Q 028860 20 FCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVH 93 (202)
Q Consensus 20 ~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~ 93 (202)
|=...+..+.|+-+.+++.+ .|+|+|+.|.+++.++.+.+++.+++.|-|.+|+ .+.+++|...++++|++-
T Consensus 24 ~d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d 95 (159)
T COG4894 24 YDRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEID 95 (159)
T ss_pred ECCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEc
Confidence 33578899999999999988 8999999999999999999999999999999999 888888876669999883
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=98.17 E-value=1.3e-05 Score=63.38 Aligned_cols=98 Identities=13% Similarity=0.234 Sum_probs=51.2
Q ss_pred CCccEEEEEEE-EeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCe----EEEEEec-ccccCCeEEEEeC
Q 028860 22 VPYTMEMLVKK-RIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIP----LLTMRQK-SFKWRKEWTVHPG 95 (202)
Q Consensus 22 ~~~~~~l~ik~-k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~----L~~i~~k-~~s~~~~~~i~~~ 95 (202)
.+....|.++. +.++++. ...++|.+|+++++++.+.+++..++.++++++.. +++++++ .+..++...+|.+
T Consensus 35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~ 113 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLP 113 (187)
T ss_dssp TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEET
T ss_pred CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEe
Confidence 35778999999 7888888 99999999999999999999999999999999984 9999998 3445666666665
Q ss_pred CCC-----CCCCceEEEEEcCCCCCCCceEEEEe
Q 028860 96 ESS-----EDNNDILFRVEQPSPLHIKTKLEVFL 124 (202)
Q Consensus 96 ~~~-----~~~~~~l~tik~~~~~~~k~~~~v~~ 124 (202)
... .. ..+-++|+-. ++ ..+++|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~i~G~-~~--~~~~~I~~ 143 (187)
T PF04525_consen 114 PKSNISIDDS-EGPDFEIKGN-FW--DRSFTIYD 143 (187)
T ss_dssp --T-----------SEEEES--TT--TT--EEEE
T ss_pred cccceeecCC-CCceEEEEEE-ec--CcEEEEEE
Confidence 210 01 3345677532 22 34666664
No 6
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=98.00 E-value=0.00028 Score=59.51 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=102.3
Q ss_pred eCCCEEEEcCCCCEEEEEeccC---------CCcCCeEEEECCCCCeEEEEEecccccC--------CeEEEEeCCCCCC
Q 028860 38 SNAHYDVFDISGNLLLQVDGSL---------WKFQKKRVMRDPAGIPLLTMRQKSFKWR--------KEWTVHPGESSED 100 (202)
Q Consensus 38 ~~~~f~V~D~~G~~v~~V~g~~---------~s~~~~~~l~D~~G~~L~~i~~k~~s~~--------~~~~i~~~~~~~~ 100 (202)
+.|.|.|.|.+|+.+|.+-+.- -.-+-...++|.-|+++++++|...... ...++-.+.
T Consensus 97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~---- 172 (292)
T KOG0621|consen 97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPP---- 172 (292)
T ss_pred cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCC----
Confidence 4669999999999999775431 1236778999999999999999864332 233333333
Q ss_pred CCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEee-------ecCce-eEEEEC-CeEEEEEEeeeeccc-ee
Q 028860 101 NNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS-------FTSLS-FKVYRG-KTVLCQVANHNYTWG-SI 170 (202)
Q Consensus 101 ~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~-------~~~~~-~~I~~~-~~~va~v~~~~~~~~-~~ 170 (202)
.-++++|.+... ....++.+...... ..+.|+|- .-+.. |.+..+ ++.|++|+|+|.+.. +.
T Consensus 173 -~~~lG~v~q~~~-~~~~~f~i~~~~~~------~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~ 244 (292)
T KOG0621|consen 173 -MGLLGKVLQTWG-CVNPNFHLWDRDGN------LVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREA 244 (292)
T ss_pred -CceEEEEEEeec-cccceEEEEcccce------eEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhh
Confidence 234666654421 12345555542221 13444443 22233 444444 999999999999887 88
Q ss_pred eeceeeEEEEEcCCCC---HHHHHHHHhhhhcc
Q 028860 171 CKGKENFKVRVHPEVD---YSFITALLVILEEN 200 (202)
Q Consensus 171 ~~~~d~Y~v~V~pg~D---~~li~al~v~lD~~ 200 (202)
+++.|+|.|.-.-+.| .++++|.+..||.+
T Consensus 245 fTDad~f~v~FPldLdvk~kavllga~flID~~ 277 (292)
T KOG0621|consen 245 FTDADTFVVHFPLDLDVKLKALLLGSTFLIDYM 277 (292)
T ss_pred eeccceeeEecCCcCCHHHHhhhhhheeeEEEE
Confidence 9999999999988877 48999999999865
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=97.11 E-value=0.0043 Score=50.14 Aligned_cols=66 Identities=17% Similarity=0.366 Sum_probs=54.5
Q ss_pred CEEEEcCCCCEEEEEeccCCCc-------CCeEEEECCCCCeEEEEEecccccCCeEEEEeCCCCCCCCceEEEEEcCC
Q 028860 41 HYDVFDISGNLLLQVDGSLWKF-------QKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPS 112 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~-------~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~~~~~~~~l~tik~~~ 112 (202)
...|+|..|+.|++++-. +.. ..+..+.++.|+++++|+++.-.+.++|+|+++++ +++++|+.+.
T Consensus 77 ~~~i~D~~g~~vl~i~Rp-~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~-----~~~~~I~gp~ 149 (221)
T PF03803_consen 77 KMHIYDNYGREVLTIERP-FKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANG-----NPIFTIKGPC 149 (221)
T ss_pred EEEEEecCCCEEEEEEcC-CcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCC-----ceEEEEeCCc
Confidence 347889999999999864 332 46788899999999999998766899999999984 5699998764
No 8
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=77.77 E-value=23 Score=30.14 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=29.6
Q ss_pred CcCCeEEEECCCCCeEEEEEecc-------cccCCeEEEEeCCCCCCCCceEEEEEcCCCC
Q 028860 61 KFQKKRVMRDPAGIPLLTMRQKS-------FKWRKEWTVHPGESSEDNNDILFRVEQPSPL 114 (202)
Q Consensus 61 s~~~~~~l~D~~G~~L~~i~~k~-------~s~~~~~~i~~~~~~~~~~~~l~tik~~~~~ 114 (202)
.-..++.+.|++|++++++.... +.-+.-+....-+.. .+.+++++|+..+
T Consensus 96 et~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~---g~eVl~~~R~~~c 153 (292)
T KOG0621|consen 96 ETANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNF---GQEVLTCKRPFPC 153 (292)
T ss_pred ccCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeeccc---CcEEEEEeccccc
Confidence 44778888888888887554322 223444444433222 3568888876433
No 9
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=62.84 E-value=26 Score=29.30 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=27.7
Q ss_pred EEEEEEEEe-eeEeCCCEEEEcC-CCCEEEEEeccCCCc-CCeEEEECCCCC
Q 028860 26 MEMLVKKRI-QGMSNAHYDVFDI-SGNLLLQVDGSLWKF-QKKRVMRDPAGI 74 (202)
Q Consensus 26 ~~l~ik~k~-~~~~~~~f~V~D~-~G~~v~~V~g~~~s~-~~~~~l~D~~G~ 74 (202)
.+|.+-++. .....+.|.|+|. +|+.+|.++..-..+ .+++.+..+.|-
T Consensus 103 ~~l~v~~~~~v~~~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~G~ 154 (264)
T PF04790_consen 103 SRLVVGPDGTVEAQSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPEGA 154 (264)
T ss_pred ceEEECCCccEEEecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCccE
Confidence 355554444 3334447777777 777777777643222 445555555664
No 10
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=61.36 E-value=16 Score=24.41 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=7.8
Q ss_pred eEEEECCCCCeEEEEE
Q 028860 65 KRVMRDPAGIPLLTMR 80 (202)
Q Consensus 65 ~~~l~D~~G~~L~~i~ 80 (202)
++.|+|++|+.+.++.
T Consensus 28 ~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTIS 43 (81)
T ss_dssp EEEEEETTS-EEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4555555555554443
No 11
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=59.39 E-value=10 Score=31.34 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=19.9
Q ss_pred CEEEEcCCCCEEEEEeccCCCc-CCeEEEECCCC
Q 028860 41 HYDVFDISGNLLLQVDGSLWKF-QKKRVMRDPAG 73 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~-~~~~~l~D~~G 73 (202)
.|.|.|.+|+++|.++.+-..+ .+++.+..+.|
T Consensus 140 ~Fev~~~dgk~LFsad~dEv~vgae~LRv~g~~G 173 (292)
T KOG3950|consen 140 RFEVNDVDGKLLFSADEDEVVVGAEKLRVLGAEG 173 (292)
T ss_pred eeEEecCCCcEEEEeccceeEeeeeeeEeccCCc
Confidence 6777777777777777644333 34455555444
No 12
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=58.48 E-value=27 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.4
Q ss_pred cCceeEEEECCeEEEEEEeeeeccceeeeceeeEEEEEcCCC-CH
Q 028860 144 TSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEV-DY 187 (202)
Q Consensus 144 ~~~~~~I~~~~~~va~v~~~~~~~~~~~~~~d~Y~v~V~pg~-D~ 187 (202)
..++|.|.++|..|++| .-. .-.++.+|.|+|..|+ |.
T Consensus 21 vArn~~ve~egveVgEi-DIV-----Aek~GerYavEVKAG~vdi 59 (209)
T COG4998 21 VARNMPVEDEGVEVGEI-DIV-----AEKGGERYAVEVKAGMVDI 59 (209)
T ss_pred EeecceeecCCeEEEEE-EEE-----EecCCcEEEEEEeccccch
Confidence 46789999999999999 543 2457999999998884 53
No 13
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=57.20 E-value=58 Score=26.90 Aligned_cols=75 Identities=8% Similarity=0.109 Sum_probs=39.6
Q ss_pred eEEEEEecc--c--ccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcC--CCCCCeEEEEeeecCcee
Q 028860 75 PLLTMRQKS--F--KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNII--GKRAPDFYVTGSFTSLSF 148 (202)
Q Consensus 75 ~L~~i~~k~--~--s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~--~~~~~~~~v~G~~~~~~~ 148 (202)
.-+.|+|.. + .+.+.|..+..+.. ++.|...||.. ..-.+.+-+........ .+.. -=+|+.|+++.+|
T Consensus 8 vqC~I~R~k~g~~~~lyp~y~l~l~~~~---~kfLLaArK~~-~s~~s~YiIS~~~~dlsr~s~~y-vGKLrsNf~GT~F 82 (246)
T PF01167_consen 8 VQCFIRRDKSGLTRGLYPGYYLYLEGEN---GKFLLAARKRK-RSKTSNYIISLDPDDLSRSSNNY-VGKLRSNFLGTEF 82 (246)
T ss_dssp EEEEEEEESTTCCCT---EEEEEEESTT---SEEEEEEEEEC-SSSSEEEEEESSHHHHCTT---E-SEEEEE-TTSSEE
T ss_pred EEEEEEEECCCCCcccCcEeEeccccCC---CcEEEeeeecc-cCCCcceEEecCCCccccCCCce-eeeeccccceeEE
Confidence 347786632 2 36788888875332 56777776542 11134555554322110 1122 3457889999999
Q ss_pred EEEECC
Q 028860 149 KVYRGK 154 (202)
Q Consensus 149 ~I~~~~ 154 (202)
.||+.|
T Consensus 83 ~iyD~g 88 (246)
T PF01167_consen 83 TIYDNG 88 (246)
T ss_dssp EEEESS
T ss_pred EEECCC
Confidence 999973
No 14
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=56.43 E-value=58 Score=22.79 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=23.2
Q ss_pred CCeEEEECCCCCeEEEEEecccccCCeEEEEeCCC
Q 028860 63 QKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGES 97 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~ 97 (202)
++.+.|+|++|+.|+.+.+.. -..|+...+++
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~g 92 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG---DGRFEGQTPDG 92 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC---TTEEEEEECCC
T ss_pred CCEEEEECCCCCEEEEEEccC---CeeEEeEcCCC
Confidence 788999999999999998862 34677777664
No 15
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=54.35 E-value=17 Score=27.64 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=22.3
Q ss_pred EEeeecCceeEEEECCeEEEEEEeeeec
Q 028860 139 VTGSFTSLSFKVYRGKTVLCQVANHNYT 166 (202)
Q Consensus 139 v~G~~~~~~~~I~~~~~~va~v~~~~~~ 166 (202)
..|.++.|+|.|+.+|+++..| ...+.
T Consensus 116 ~~~~~~~R~Y~i~~~~~pl~~I-~E~F~ 142 (149)
T PF01947_consen 116 CEGPFWSRTYRIIHNGKPLMVI-TEVFP 142 (149)
T ss_dssp SS-EEEEEEEEEEETTEEEEEE-EEEEE
T ss_pred CCCCcCccEEEEEECCEEEEEE-EEECC
Confidence 4678899999999999999999 77544
No 16
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.22 E-value=11 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=39.9
Q ss_pred EEeeeEeCC--CEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEE
Q 028860 32 KRIQGMSNA--HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMR 80 (202)
Q Consensus 32 ~k~~~~~~~--~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~ 80 (202)
|+++.+..| .|+=.|+.-+.|..-+|+.++.-+++.+.|++|+|+..=.
T Consensus 334 QQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE 384 (542)
T COG1021 334 QQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGE 384 (542)
T ss_pred HHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCC
Confidence 345555443 6777789999999999999999999999999999986433
No 17
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=48.76 E-value=80 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=12.8
Q ss_pred CCCCeeeEecccccCCc
Q 028860 8 YGVPIINIVGENFCVPY 24 (202)
Q Consensus 8 ~~~~~~~vv~~~~~~~~ 24 (202)
=|.+..++|.-..|.++
T Consensus 15 ~Gk~V~v~iDls~Ct~~ 31 (100)
T PF06903_consen 15 AGKNVTVVIDLSQCTPE 31 (100)
T ss_pred cCCeEEEEEEHHHCccC
Confidence 35566677888899887
No 18
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=46.69 E-value=51 Score=24.70 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=29.8
Q ss_pred CEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEecccccCCe
Q 028860 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKE 89 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~ 89 (202)
.|.|++.+|-.+| .++=-...|.|.+|+.++.-.++.++-.|.
T Consensus 32 ~f~vyr~~G~D~Y------gsfl~~i~l~d~~g~vv~~~~~~~L~~lP~ 74 (133)
T PF07680_consen 32 SFHVYRVEGPDVY------GSFLIGIQLKDSTGHVVLNWDQEKLSSLPK 74 (133)
T ss_pred EEEEEEcCCCccC------CceeeEEEEECCCCCEEEEeCHHHhhhCCh
Confidence 4555555555543 355667899999999999998876653333
No 19
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=46.26 E-value=68 Score=24.84 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=35.7
Q ss_pred CEEEEcCCCCEEEEEec------cCCCcCCeEEEECCCCCeEEEEEeccc--ccCCeEEEEeCC
Q 028860 41 HYDVFDISGNLLLQVDG------SLWKFQKKRVMRDPAGIPLLTMRQKSF--KWRKEWTVHPGE 96 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g------~~~s~~~~~~l~D~~G~~L~~i~~k~~--s~~~~~~i~~~~ 96 (202)
-++|+|++|+++-.+.- +........-++|.+|+.|+. +|... .+...|...-+|
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~-~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQ-RRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEE-EeCCCCCCCCCcccccCCC
Confidence 68999999999998721 233445567788988887763 44322 134556666554
No 20
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=45.44 E-value=1e+02 Score=22.21 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=24.4
Q ss_pred EeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEe
Q 028860 33 RIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQ 81 (202)
Q Consensus 33 k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~ 81 (202)
+-+.+..+.|.+++.+ ....|... ++...++|++|..++.+-.
T Consensus 63 QPi~iN~gg~~~y~gq--~a~~vt~~----~hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 63 QPIIINKGGFPVYNGQ--IAKFVTVP----GHSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp SSEEE-TTS-EEETTE--E--EEESS----SEEEEEE-TTS-EEEEESE
T ss_pred CCEEEccCCceEEccc--eeEEEEcc----CceEEEEeCCCcEEEeecc
Confidence 3455655578887543 55555543 5667899999999988743
No 21
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=45.07 E-value=82 Score=20.40 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=27.8
Q ss_pred EEEcCCCCEEEEEe-ccC-----CCcCCeEEEECCCCCeEEEEEe
Q 028860 43 DVFDISGNLLLQVD-GSL-----WKFQKKRVMRDPAGIPLLTMRQ 81 (202)
Q Consensus 43 ~V~D~~G~~v~~V~-g~~-----~s~~~~~~l~D~~G~~L~~i~~ 81 (202)
.|.|++|+++-+|. |.. .....+=.|.|.+|+.+.+...
T Consensus 14 ~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae~ 58 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAEP 58 (64)
T ss_pred eEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEEe
Confidence 68899999999954 432 1234555788888888887654
No 22
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=44.84 E-value=54 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEeeecCceeEEEECCeEEEEE
Q 028860 138 YVTGSFTSLSFKVYRGKTVLCQV 160 (202)
Q Consensus 138 ~v~G~~~~~~~~I~~~~~~va~v 160 (202)
.|.|.|-+....+|.+++.|+++
T Consensus 9 ~V~gkf~ng~l~LY~~~e~IG~~ 31 (76)
T PF10830_consen 9 KVTGKFKNGGLELYHDNEMIGEI 31 (76)
T ss_pred ceEEEecCCcEEEEeccceeeeE
Confidence 36788888888899998889887
No 23
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=41.41 E-value=95 Score=19.94 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCCCCCCeeeEeccc--c-cCC-ccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEec
Q 028860 5 GWDYGVPIINIVGEN--F-CVP-YTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG 57 (202)
Q Consensus 5 ~~~~~~~~~~vv~~~--~-~~~-~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g 57 (202)
-|+|+...-+.|... | |-+ --..=.|-+++-|+.= +|.|.|++|.+-|.=+.
T Consensus 4 yWsY~~~~~VeIN~NAkyg~P~~VG~kG~IIe~l~S~~Y-DY~V~~~~GdI~~fKE~ 59 (71)
T PF09629_consen 4 YWSYPLGLEVEINSNAKYGCPHHVGRKGKIIEKLHSATY-DYAVSDETGDITRFKEH 59 (71)
T ss_dssp S--S-TT-EEEE-TT-TTTSTT--SSEEEEEEE---SS--SEEEEETTS-EEEE-GG
T ss_pred ccccCCCCEEEEcCcccccCccccccccchhhhhhhhee-eeeeecccCceeeeeec
Confidence 488888876665543 1 111 1122234455667766 89999999998876443
No 24
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=41.21 E-value=33 Score=28.00 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=8.2
Q ss_pred eEEEECCCCCeEEEE
Q 028860 65 KRVMRDPAGIPLLTM 79 (202)
Q Consensus 65 ~~~l~D~~G~~L~~i 79 (202)
.+.|+|++|+.+-++
T Consensus 127 ~v~I~D~~G~vV~t~ 141 (223)
T PRK12813 127 ELVVRDAAGAEVARE 141 (223)
T ss_pred EEEEEcCCCCEEEEE
Confidence 455555555555444
No 25
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=39.87 E-value=88 Score=21.52 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=22.3
Q ss_pred EEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEe
Q 028860 43 DVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQ 81 (202)
Q Consensus 43 ~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~ 81 (202)
.=+|..|+-+|.-+.+ ..+++++|..|+.|.++--
T Consensus 34 rw~~~kG~kiYewDsq----HG~lEvy~~~GkHLGe~Dp 68 (85)
T PF09000_consen 34 RWKDKKGRKIYEWDSQ----HGELEVYNKRGKHLGEFDP 68 (85)
T ss_dssp EEEETTTTEEEEEETT----TTEEEEEETT-BEEEEE-T
T ss_pred ceEcCCCCEEEEEcCC----CCeEEEEcCCCcCcccccC
Confidence 3456777777777754 4577777777777776643
No 26
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=39.51 E-value=38 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+.+|..+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 100 ~GFF~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 100 EGFFKILMPDGTYAYTRDGS-FKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred CcEEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEecc
Confidence 34678888899888887776 5677777899999999884
No 27
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=37.85 E-value=54 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+.+|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 100 ~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 100 RGYFQIQLPDGETAYTRAGA-FNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred CcEEEEEcCCCCEEEeeCCC-eeECCCCCEECCCCCEeEe
Confidence 33567777889888887776 5677777899999999985
No 28
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=36.68 E-value=38 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+++|+..|+=+|. |.+...-.|.+.+|.+|+-
T Consensus 85 ~GFF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 85 DGWLAVQAPDGSEAYTRNGS-LQVDANGQLRTANGLPVLG 123 (246)
T ss_pred CcEEEEEcCCCCEEEEeCCC-eeECCCCCEEcCCCCCccC
Confidence 34678888889888887776 5677777788888988773
No 29
>PF15529 Toxin_49: Putative toxin 49
Probab=35.16 E-value=45 Score=23.18 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.8
Q ss_pred CEEEEcCCCCEEEEEecc
Q 028860 41 HYDVFDISGNLLLQVDGS 58 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~ 58 (202)
+|+++|++|.++-++++.
T Consensus 31 ~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 31 SYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred ceeEEcCCCcEeEEeecc
Confidence 899999999977666653
No 30
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=34.84 E-value=48 Score=27.11 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=12.2
Q ss_pred CCeEEEECCCCCeEEEEE
Q 028860 63 QKKRVMRDPAGIPLLTMR 80 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~ 80 (202)
.-++.|+|++|+.+-++.
T Consensus 130 ~v~v~I~D~~G~vV~t~~ 147 (230)
T PRK12633 130 KVTVKVLDPSGAVVRTME 147 (230)
T ss_pred EEEEEEEeCCCCEEEEEe
Confidence 455777777777776664
No 31
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=34.62 E-value=52 Score=27.32 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+++|..+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 96 ~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 134 (260)
T PRK12817 96 EGFFRVIMADGTYAYTRAGN-FNIDSNGMLVDDNGNRLEI 134 (260)
T ss_pred CcEEEEEcCCCCeEEEeCCc-eeECCCCCEEcCCCCEEEe
Confidence 44677888899888887776 5666666799999998884
No 32
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=34.15 E-value=91 Score=23.46 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=35.2
Q ss_pred EEEEcCCCCEEEEEeccCCC-------cCCeEEEECCCCCeEEEEEecc-cccCCeEEEEe
Q 028860 42 YDVFDISGNLLLQVDGSLWK-------FQKKRVMRDPAGIPLLTMRQKS-FKWRKEWTVHP 94 (202)
Q Consensus 42 f~V~D~~G~~v~~V~g~~~s-------~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~i~~ 94 (202)
+.|+|++|+.+-++..+... ..-...|+|.+|+.|+.-|... ..+...|.+.-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~ 61 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSC 61 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccc
Confidence 36899999999987653222 2334778898898887544332 34667888653
No 33
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=33.36 E-value=55 Score=27.13 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+++|...|+=+|. |.+...-.|.+++|.+|+-
T Consensus 100 ~GFF~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vlg 138 (256)
T PRK12818 100 RGFFTVERNAGNNYYTRDGH-FHVDTQGYLVNDSGYYVLG 138 (256)
T ss_pred CceEEEEcCCCCeEEeeCCC-eeECCCCCEEcCCCCEEec
Confidence 34678888889878887776 4566666788889988773
No 34
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=33.00 E-value=51 Score=27.37 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+++|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 100 ~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 100 QGFFQVLMPDGTTAYTRDGS-FQTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred CcEEEEEcCCCCeEEeeCCC-ceECCCCCEECCCCCEecc
Confidence 33567888889888887776 5677777899999999875
No 35
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=32.47 E-value=49 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+++|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 98 ~GfF~V~~~~g~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 98 EGFFQVLMPDGTTAYTRDGA-FKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred CcEEEEEcCCCCeEEeeCCc-eEECCCCCEECCCCCEecC
Confidence 33567878889888887776 5677777899999999884
No 36
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=31.34 E-value=78 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=10.9
Q ss_pred CCeEEEECCCCCeEEEEE
Q 028860 63 QKKRVMRDPAGIPLLTMR 80 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~ 80 (202)
.-.++|+|++|+.+-++.
T Consensus 127 ~vti~I~D~~G~~Vrt~~ 144 (225)
T PRK06655 127 NVTVTITDSAGQVVRTID 144 (225)
T ss_pred EEEEEEEcCCCCEEEEEe
Confidence 345666676676665553
No 37
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=30.94 E-value=39 Score=22.86 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=10.7
Q ss_pred CEEEEcCCCCEEEEEe
Q 028860 41 HYDVFDISGNLLLQVD 56 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~ 56 (202)
+|.|+|++|+.|++-.
T Consensus 27 D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEEE-TT--EEEETT
T ss_pred EEEEECCCCCEEEEec
Confidence 7889999999998844
No 38
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=29.46 E-value=78 Score=20.44 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.4
Q ss_pred CCeEEEECCCCCeEEEEE
Q 028860 63 QKKRVMRDPAGIPLLTMR 80 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~ 80 (202)
..+.++.|.+|+.|..++
T Consensus 45 ~WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 45 DWRVEVVDEDGQVLGSLR 62 (66)
T ss_pred CEEEEEEcCCCCEEEEEE
Confidence 567999999999998875
No 39
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=29.36 E-value=2.2e+02 Score=21.74 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=34.1
Q ss_pred EeCCCEEEEcCCCCEEEEEeccC---CC-cCCeEE----EECCC--CCeEEEEEecc-cccCCeEEEEeCCC
Q 028860 37 MSNAHYDVFDISGNLLLQVDGSL---WK-FQKKRV----MRDPA--GIPLLTMRQKS-FKWRKEWTVHPGES 97 (202)
Q Consensus 37 ~~~~~f~V~D~~G~~v~~V~g~~---~s-~~~~~~----l~D~~--G~~L~~i~~k~-~s~~~~~~i~~~~~ 97 (202)
|.++-|+|+|++|+++..+.-.. .. ...... +.|.+ |..++.-|... .++-..|+..-+|.
T Consensus 2 ~~~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~ 73 (180)
T cd03676 2 WRNELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGG 73 (180)
T ss_pred CcCcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccC
Confidence 45568999999999998765321 11 122233 34655 33333333322 23567887765544
No 40
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=28.97 E-value=74 Score=26.32 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|.+++|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 100 ~GfF~v~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 100 QGFFQVQLPDGTIAYTRDGS-FKLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred CcEEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEEee
Confidence 33567778889888887776 5676777899999999885
No 41
>PF08829 AlphaC_N: Alpha C protein N terminal; InterPro: IPR014933 The alpha C protein (ACP) is found in Streptococcus and acts as an invasin which plays a role in the internalisation and translocation of the organism across human epithelial surfaces. Group B Streptococcus is the leading cause of diseases including bacterial pneumonia, sepsis and meningitis. The N-terminal of ACP is associated with virulence and forms a beta sandwich and a three helix bundle [, , ]. ; PDB: 1YWM_A 2O0I_1.
Probab=28.62 E-value=25 Score=27.49 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=22.3
Q ss_pred CEEEEcCCCCEEEEEeccCCCcCCeEEEECCC
Q 028860 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPA 72 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~ 72 (202)
.|.|.|++|++++.-+|+.-..+=.++++|++
T Consensus 92 tY~ild~~G~P~~k~DGQvdIvsvnlt~Ydst 123 (194)
T PF08829_consen 92 TYNILDEDGNPHVKSDGQVDIVSVNLTFYDST 123 (194)
T ss_dssp EEEEEETTSSB-B-TTSSB-EEEEEEEEE--H
T ss_pred EEEeecCCCCcccCCCCcEEEEEEEEEEeCcH
Confidence 68888999999999999876667778888864
No 42
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=28.15 E-value=1.9e+02 Score=19.46 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.1
Q ss_pred EEEEcCCCCEE
Q 028860 42 YDVFDISGNLL 52 (202)
Q Consensus 42 f~V~D~~G~~v 52 (202)
..|.|++|+++
T Consensus 24 v~v~D~~Gnpv 34 (92)
T smart00634 24 ATVTDANGNPV 34 (92)
T ss_pred EEEECCCCCCc
Confidence 35556666644
No 43
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=27.96 E-value=50 Score=20.43 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=12.0
Q ss_pred CEEEEcCCCCEEEEEe
Q 028860 41 HYDVFDISGNLLLQVD 56 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~ 56 (202)
-|.-.|++|+++|.=.
T Consensus 15 vYk~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 15 VYKWVDENGVVHYSDT 30 (60)
T ss_pred EEEEECCCCCEEECcc
Confidence 5666789999988744
No 44
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=27.72 E-value=96 Score=22.98 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=25.4
Q ss_pred CCCCEEEEEeccCCC--------cCCeEEEECCCCCeEEEEEe
Q 028860 47 ISGNLLLQVDGSLWK--------FQKKRVMRDPAGIPLLTMRQ 81 (202)
Q Consensus 47 ~~G~~v~~V~g~~~s--------~~~~~~l~D~~G~~L~~i~~ 81 (202)
++|..++.++|.... ..=+.+++|.+|+++++-.-
T Consensus 64 ~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 64 PDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 468888888885421 24469999999999965443
No 45
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=27.54 E-value=1.6e+02 Score=24.29 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=25.0
Q ss_pred ceeEEEEC---CeEEEEEEeeeeccceeeeceeeEEEEEcCCCCH--HHHHHH
Q 028860 146 LSFKVYRG---KTVLCQVANHNYTWGSICKGKENFKVRVHPEVDY--SFITAL 193 (202)
Q Consensus 146 ~~~~I~~~---~~~va~v~~~~~~~~~~~~~~d~Y~v~V~pg~D~--~li~al 193 (202)
.+|+++.. +++|.+. .|. ++|.|++++.--.-+ ||.+||
T Consensus 199 KNFql~~~~~~~~~~lqf-Gk~--------~~~~f~~d~~~Pls~~qAF~i~l 242 (246)
T PF01167_consen 199 KNFQLVHPSDPDRIVLQF-GKV--------GKDVFTMDFRYPLSPLQAFAIAL 242 (246)
T ss_dssp TEEEEEBTTBTTSESEEE-EEE--------ETTEEEEEEETT-BHHHHHHHHH
T ss_pred ceeEEEccCCCCeEEEEE-EEe--------cCCEEEEEecCCCCHHHHHHHHH
Confidence 36778765 6677777 552 689999999744443 444443
No 46
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=27.09 E-value=88 Score=22.08 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=17.7
Q ss_pred CCeEEEECCCCCeEEEEEec---ccccCCeEEEE
Q 028860 63 QKKRVMRDPAGIPLLTMRQK---SFKWRKEWTVH 93 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k---~~s~~~~~~i~ 93 (202)
+..+.++|.+|.--+.=+.. .-...+.|.|+
T Consensus 70 G~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~ 103 (105)
T PF11191_consen 70 GPPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIF 103 (105)
T ss_pred CCCEEEECCCCCCcccccccccCCCCCCcEEEEe
Confidence 57888998888633333322 11135667665
No 47
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=27.00 E-value=2.8e+02 Score=21.91 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=36.8
Q ss_pred CccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCC----------cCCeEEEECCCCCeEEEEEec
Q 028860 23 PYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWK----------FQKKRVMRDPAGIPLLTMRQK 82 (202)
Q Consensus 23 ~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s----------~~~~~~l~D~~G~~L~~i~~k 82 (202)
.+...|+++. + ....+|++|++-|++.+..+. -...+.+++++|.+..+++.+
T Consensus 38 ~~~Pdy~~~~----~---~~~~yd~~G~l~y~l~a~~~~Hy~~~~~t~f~~P~l~~y~~~~~~~W~v~A~ 100 (192)
T PRK10893 38 NNDPTYQSQH----T---DTVVYNPEGALSYKLVAQHVEYYSDQAVSWFTQPVLTTFDKNKVPTWSVRAD 100 (192)
T ss_pred CCCCCEEEec----c---EEEEECCCCCEEEEEEecceEEcCCCCCEEEeCCeEEEECCCCcceEEEEeC
Confidence 4445555543 2 458899999999999985421 255688888888877777654
No 48
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=26.80 E-value=98 Score=25.16 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=12.0
Q ss_pred CeEEEECCCCCeEEEEE
Q 028860 64 KKRVMRDPAGIPLLTMR 80 (202)
Q Consensus 64 ~~~~l~D~~G~~L~~i~ 80 (202)
-.+.|+|++|+.+.++.
T Consensus 124 v~i~I~d~~G~~V~t~~ 140 (221)
T PRK12634 124 VNFEITDANGAFVKQIS 140 (221)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 35777787787776664
No 49
>PF05171 HemS: Haemin-degrading HemS.ChuX domain; InterPro: IPR007845 The Yersinia enterocolitica O:8 periplasmic binding protein-dependent transport system consisted of four proteins: the periplasmic haemin-binding protein HemT, the haemin permease protein HemU, the ATP-binding hydrophilic protein HemV and the haemin-degrading protein HemS. The structure for HemS has been solved and consists of a tandem repeat of the domain represented in this entry[].; GO: 0006826 iron ion transport; PDB: 2HQ2_A 2J0R_A 2J0P_A 1U9T_A.
Probab=25.47 E-value=2.4e+02 Score=20.52 Aligned_cols=67 Identities=13% Similarity=0.029 Sum_probs=35.0
Q ss_pred CeeeEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEecc------------CCCcCCeEEEECCCCCeEEE
Q 028860 11 PIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGS------------LWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 11 ~~~~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~------------~~s~~~~~~l~D~~G~~L~~ 78 (202)
|.+++|+.+.|.+..+--+=+ +...+.-+.|.|++ .-+++.-. .-.....++++|++|+.+..
T Consensus 36 ~vm~~vrN~g~vq~~~G~~~~---~~~~g~~~~vl~~~--~~L~l~~~~~~~~w~v~~~~~~g~~~Slq~fD~~G~~i~k 110 (129)
T PF05171_consen 36 PVMAFVRNPGAVQEHTGPYEN---LRRMGPWLNVLDPG--FDLRLFFSHWASAWAVREPTRDGVRTSLQFFDAQGEAIHK 110 (129)
T ss_dssp SEEEEEEESSEEEEEEE---S---EEECTTEEEEE-TT--EEEEEEGGGEEEEEEEEEEETTSEEEEEEEEETTS-EEEE
T ss_pred cEEEEECCCceeEEEeccccC---eeccCCEEEEECCC--ceEEEehhheeEEEEEEecCCCCcEEEEEEECCCCCEEEE
Confidence 788888888887653322211 12223244444443 32233221 11245678888888888888
Q ss_pred EEec
Q 028860 79 MRQK 82 (202)
Q Consensus 79 i~~k 82 (202)
|-.+
T Consensus 111 i~~~ 114 (129)
T PF05171_consen 111 IFGT 114 (129)
T ss_dssp EEES
T ss_pred EECC
Confidence 7543
No 50
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=25.30 E-value=2.5e+02 Score=19.75 Aligned_cols=7 Identities=43% Similarity=0.710 Sum_probs=2.7
Q ss_pred EEECCCC
Q 028860 67 VMRDPAG 73 (202)
Q Consensus 67 ~l~D~~G 73 (202)
.|+|.+|
T Consensus 68 vl~~~~g 74 (116)
T cd00028 68 VIYDGSG 74 (116)
T ss_pred EEEcCCC
Confidence 3333333
No 51
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=25.27 E-value=15 Score=25.16 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=16.2
Q ss_pred CEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEE
Q 028860 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (202)
=|-|+|.+|..++.-...-+--.+-..+.|++|.+++
T Consensus 58 Y~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 58 YFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred eEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 4777888888776633211223444567788887653
No 52
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=25.14 E-value=98 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=30.4
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (202)
++-|.|...+|+..|+=+|. |.+..+-.|++.+|-+|+.
T Consensus 100 ~gfF~I~~~dG~~~YTR~G~-F~~d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 100 DGFFQIQTPDGTIAYTRDGS-FTVDEEGQLVTSNGYPVLD 138 (265)
T ss_pred CceEEEEcCCCCEEEeeCCc-eeECCCCCEEeCCCCCccC
Confidence 44688888999999999987 5677777777777777765
No 53
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=24.31 E-value=3.4e+02 Score=21.04 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=9.3
Q ss_pred EEEcCCCCEEEEEecc
Q 028860 43 DVFDISGNLLLQVDGS 58 (202)
Q Consensus 43 ~V~D~~G~~v~~V~g~ 58 (202)
.|||++|+-+|.+.-+
T Consensus 94 siyds~~nn~fS~ND~ 109 (182)
T COG5436 94 SIYDSNGNNFFSINDR 109 (182)
T ss_pred EEEcCCCCceEEeccc
Confidence 5566666666665543
No 54
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=23.94 E-value=1.8e+02 Score=20.38 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=20.1
Q ss_pred CEEEEcCCCCEEEEEeccC-CCcCCeEEEEC-CCCCeEEEEEec
Q 028860 41 HYDVFDISGNLLLQVDGSL-WKFQKKRVMRD-PAGIPLLTMRQK 82 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~-~s~~~~~~l~D-~~G~~L~~i~~k 82 (202)
..+|+|++|++||.=.-.. ....-.+.|-+ +.|+-++.|.-.
T Consensus 51 tI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~ 94 (106)
T PF11589_consen 51 TITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNG 94 (106)
T ss_dssp EEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeC
Confidence 6777888888888854321 11122333432 245555555544
No 55
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=23.42 E-value=2.7e+02 Score=19.47 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=2.9
Q ss_pred EEEEcCCC
Q 028860 42 YDVFDISG 49 (202)
Q Consensus 42 f~V~D~~G 49 (202)
+.++|.+|
T Consensus 66 Lvl~~~~g 73 (114)
T smart00108 66 LVLYDGDG 73 (114)
T ss_pred EEEEeCCC
Confidence 33333333
No 56
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=23.12 E-value=2.9e+02 Score=22.85 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=40.2
Q ss_pred CCEEEEcCCCCEEEEEecc------------CCCcCCeEEEECCCCCeEEEEEecc-cccCCeEEEEeCC
Q 028860 40 AHYDVFDISGNLLLQVDGS------------LWKFQKKRVMRDPAGIPLLTMRQKS-FKWRKEWTVHPGE 96 (202)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~------------~~s~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~i~~~~ 96 (202)
....|+|++++++-...-+ .+...-...|+|.+|+.|+.-|... ..+-..|++.-++
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~G 92 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCS 92 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCC
Confidence 3889999999999887542 1222445788999998888877643 3456788777544
No 57
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.76 E-value=86 Score=26.09 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (202)
++-|.|.+.+|...|+=+|. |.+...-.|.+++|.+|.
T Consensus 100 ~GFF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl 137 (262)
T PRK12692 100 RGYFQVTSPNGEIQYTRAGS-FNKNAAGQLVTMEGYAVD 137 (262)
T ss_pred CceEEEECCCCCeEEEeCCC-ceECCCCCEEcCCCCCcc
Confidence 44677878889878887776 567667789999999886
No 58
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=22.75 E-value=1.5e+02 Score=16.47 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=13.5
Q ss_pred EcCCCCEEEEEeccCCCcCCeEEEECCCCCeE
Q 028860 45 FDISGNLLLQVDGSLWKFQKKRVMRDPAGIPL 76 (202)
Q Consensus 45 ~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L 76 (202)
+|+.|+++=.++..- .....-+|+.|+++
T Consensus 1 YD~~G~l~~~~d~~G---~~~~y~YD~~g~l~ 29 (38)
T PF05593_consen 1 YDANGRLTSVTDPDG---RTTRYTYDAAGRLT 29 (38)
T ss_pred CCCCCCEEEEEcCCC---CEEEEEECCCCCEE
Confidence 355666665554321 11234555555544
No 59
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=22.67 E-value=1.5e+02 Score=23.12 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=21.6
Q ss_pred CcCCeEEEECCCCCe-EEEEEecccccCCeEEEEeC
Q 028860 61 KFQKKRVMRDPAGIP-LLTMRQKSFKWRKEWTVHPG 95 (202)
Q Consensus 61 s~~~~~~l~D~~G~~-L~~i~~k~~s~~~~~~i~~~ 95 (202)
..++++.|.+.+|+. .+++.....--.....+..+
T Consensus 110 ~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d~~v~~~ 145 (174)
T TIGR03784 110 RPGDVIRLQTPDGQWQSYQVTATRVVDESETGLDLP 145 (174)
T ss_pred CCCCEEEEEECCCeEEEEEEeEEEEECCccceeccC
Confidence 458888888888876 47777654322233444443
No 60
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=21.92 E-value=74 Score=19.93 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=8.3
Q ss_pred CEEEEcCCCCEE
Q 028860 41 HYDVFDISGNLL 52 (202)
Q Consensus 41 ~f~V~D~~G~~v 52 (202)
.|.++|++|+.|
T Consensus 11 ~F~FYDen~~lV 22 (54)
T PF12142_consen 11 SFLFYDENGQLV 22 (54)
T ss_dssp EEEEE-TTS-EE
T ss_pred eeEEECCCCCEE
Confidence 688899988877
No 61
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=21.90 E-value=2.8e+02 Score=19.22 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=32.5
Q ss_pred cccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEE
Q 028860 17 GENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (202)
Q Consensus 17 ~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (202)
.+.-|.... |.-....|...++...++|.+|+.|.+.... -...+.-+-++|.++.
T Consensus 41 ~~~~C~~~~--l~~~~~~W~~~gd~l~L~d~~G~~v~~f~~~---~~g~~~g~~~~g~~~~ 96 (99)
T PF02974_consen 41 GDRGCAGKL--LAEVPAGWRPTGDGLVLTDADGSVVAFFYRS---GDGRFEGQTPDGQPLS 96 (99)
T ss_dssp ESHHHHCCC--SSS--SEEEEETTEEEEE-TTS-EEEEEEEE---CTTEEEEEECCCEEEE
T ss_pred CCCCcchhH--HhhCccceeEcCCEEEEECCCCCEEEEEEcc---CCeeEEeEcCCCCEEE
Confidence 444565542 2222223667777999999999999887753 2345566666775543
No 62
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.65 E-value=1.6e+02 Score=24.42 Aligned_cols=36 Identities=22% Similarity=0.441 Sum_probs=25.7
Q ss_pred CEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEE
Q 028860 41 HYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (202)
.|-+.+.+|...|+=+|. |.+...-.|.+++|.+|+
T Consensus 100 gFf~v~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl 135 (257)
T PRK12819 100 SFFVTSKNGETFLTRDGS-FTLNSDRYLQTASGAFVM 135 (257)
T ss_pred EEEEEcCCCCeeEeeCCC-eeECCCCCEEcCCCCEEe
Confidence 444556788877886666 566666678888888776
No 63
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=21.38 E-value=1.8e+02 Score=21.55 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.2
Q ss_pred CCeEEEECCCCCeEEEEEeccc
Q 028860 63 QKKRVMRDPAGIPLLTMRQKSF 84 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k~~ 84 (202)
.+++.++|..|+...+|-++.|
T Consensus 72 ~d~Y~F~D~TG~I~VeId~~~w 93 (126)
T TIGR00156 72 DDRYVFRDKSGEINVVIPAAVW 93 (126)
T ss_pred CceEEEECCCCCEEEEECHHHc
Confidence 4668999999998899988765
No 64
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.24 E-value=1e+02 Score=25.43 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLL 77 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~ 77 (202)
++-|.|.+++|...|+=+|. |.+...-.|. ++|.+|+
T Consensus 83 ~GFF~V~~~~G~~~YTR~G~-F~~d~~G~L~-~~G~~Vl 119 (252)
T PRK12641 83 NGWLTIKDTNGQEAYTKNGH-LKINSKRKLT-VQNNEVI 119 (252)
T ss_pred CcEEEEEcCCCCeEEeeCCC-eeECCCCCEE-eCCcEec
Confidence 34678888888888886676 4454444455 6777766
Done!