Query 028860
Match_columns 202
No_of_seqs 117 out of 673
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 1.5E-42 5.2E-47 280.0 20.5 193 5-201 17-211 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.2 5.6E-06 1.9E-10 65.9 9.1 100 22-126 59-163 (217)
3 2fim_A Tubby related protein 1 63.6 57 0.002 26.3 13.1 104 72-181 36-159 (276)
4 3c5n_A Tubby-related protein 1 61.0 60 0.002 25.7 13.2 101 75-181 15-135 (246)
5 2v2f_A Penicillin binding prot 54.0 7.2 0.00025 19.4 1.7 14 66-79 7-20 (26)
6 4h3o_A Lectin; cadmium, plant 50.4 29 0.00098 23.4 4.9 8 39-46 28-35 (105)
7 2heq_A YORP protein; SH3-like, 44.0 60 0.002 20.6 6.0 52 5-57 9-64 (84)
8 3c12_A FLGD, flagellar protein 36.9 20 0.00068 25.6 2.4 16 65-80 42-57 (138)
9 4he6_A Peptidase family U32; u 34.0 50 0.0017 21.4 3.9 31 48-79 19-50 (89)
10 2dho_A Isopentenyl-diphosphate 32.2 1.2E+02 0.004 23.4 6.4 54 40-93 27-92 (235)
11 1hzt_A Isopentenyl diphosphate 32.0 55 0.0019 23.9 4.3 52 41-92 5-64 (190)
12 3osv_A Flagellar basal-BODY RO 30.3 28 0.00097 24.7 2.3 15 42-56 41-55 (138)
13 2ovi_A Hypothetical protein CH 28.9 87 0.003 23.0 4.8 65 11-79 59-135 (164)
14 3fm2_A Uncharacterized protein 24.5 1.8E+02 0.0062 20.6 5.7 71 10-80 17-100 (135)
15 3c5n_A Tubby-related protein 1 24.3 1E+02 0.0036 24.3 4.8 39 146-193 199-242 (246)
16 2pny_A Isopentenyl-diphosphate 23.2 1.4E+02 0.0048 23.2 5.4 53 40-92 38-102 (246)
17 2h1z_A Hybrid atracotoxin; bet 22.6 65 0.0022 17.7 2.3 12 46-57 28-39 (39)
18 3u88_M Histone-lysine N-methyl 22.4 54 0.0018 20.4 2.1 18 179-196 28-45 (75)
19 3mez_B Mannose-specific lectin 22.2 1.8E+02 0.0062 19.4 5.3 17 38-54 32-49 (113)
20 3my2_A Lipopolysaccharide expo 21.6 94 0.0032 22.8 3.9 41 42-82 33-83 (175)
21 2fkb_A Putative nudix hydrolas 21.2 2E+02 0.007 20.2 5.7 54 39-92 9-69 (180)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=1.5e-42 Score=280.04 Aligned_cols=193 Identities=35% Similarity=0.648 Sum_probs=146.1
Q ss_pred CCCCCCCeeeEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEeccc
Q 028860 5 GWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSF 84 (202)
Q Consensus 5 ~~~~~~~~~~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~ 84 (202)
.+.=+++|++||+++||++.+++|+||||.+++++++|+|+|++|+++|+|+|+.+++++++.|+|++|++|++|+++.+
T Consensus 17 ~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~ 96 (217)
T 1zxu_A 17 GAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV 96 (217)
T ss_dssp -------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC---
T ss_pred CCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc
Confidence 34445678999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEeeecCceeEEEEC--CeEEEEEEe
Q 028860 85 KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVAN 162 (202)
Q Consensus 85 s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~--~~~va~v~~ 162 (202)
+++++|++|++++.+. .+++|+|++++.+.++.+++|+..++.. ++. ++|+|+|+|++++|+|+++ |++||+|++
T Consensus 97 ~~~~~~~v~~~~~~~~-~~~i~~vrk~~~~~~~~~~~V~~~~~~~-~~~-~~~~I~G~~~~~~f~I~~~~~~~~Va~I~k 173 (217)
T 1zxu_A 97 SMHDRWQVFRGGSTDQ-RDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKR-CDFRVKGSWLERSCVVYAGESDAIVAQMHR 173 (217)
T ss_dssp ---CEEEEEETTCCCG-GGEEEEEEC-------CCEEEEETTCCC--CC-CSEEEESCTTTTCCEEEETTTCCEEEEEEE
T ss_pred ccCcEEEEEcCCCCCC-CcEEEEEEEeccccCCCeEEEEECCCCC-CCc-eEEEEEEeEeCCEEEEEECCCCEEEEEEEe
Confidence 9999999999886532 3689999988655578899999876532 223 5899999999999999999 899999966
Q ss_pred eeeccceeeeceeeEEEEEcCCCCHHHHHHHHhhhhccc
Q 028860 163 HNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENE 201 (202)
Q Consensus 163 ~~~~~~~~~~~~d~Y~v~V~pg~D~~li~al~v~lD~~~ 201 (202)
+ .++++++.++|+|.|+|.||+|.+|++|+|++||+++
T Consensus 174 k-~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~ 211 (217)
T 1zxu_A 174 K-HTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVN 211 (217)
T ss_dssp C---------CBCSEEEEECTTSBHHHHHHHHHHHHHHH
T ss_pred e-eeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 5 5677889999999999999999999999999999975
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.22 E-value=5.6e-06 Score=65.88 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCC----eEEEEEecc-cccCCeEEEEeCC
Q 028860 22 VPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI----PLLTMRQKS-FKWRKEWTVHPGE 96 (202)
Q Consensus 22 ~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~----~L~~i~~k~-~s~~~~~~i~~~~ 96 (202)
......|+++.+.++++. .+.|+|.+|+++++++.+.+++..++.++++++. ++++||++. ++++++|+|+.++
T Consensus 59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECC
Confidence 457789999998777777 9999999999999999998899999999998875 799999973 5689999999875
Q ss_pred CCCCCCceEEEEEcCCCCCCCceEEEEecC
Q 028860 97 SSEDNNDILFRVEQPSPLHIKTKLEVFLPN 126 (202)
Q Consensus 97 ~~~~~~~~l~tik~~~~~~~k~~~~v~~~~ 126 (202)
.... +.+.++|+-. ++ ...++|...+
T Consensus 138 ~~~~-~~~~~~I~G~-~~--~~~f~I~~~~ 163 (217)
T 1zxu_A 138 NKDE-KRCDFRVKGS-WL--ERSCVVYAGE 163 (217)
T ss_dssp CCC--CCCSEEEESC-TT--TTCCEEEETT
T ss_pred CCCC-CceEEEEEEe-Ee--CCEEEEEECC
Confidence 3211 2357888643 22 4567777653
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=63.58 E-value=57 Score=26.31 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=52.0
Q ss_pred CCCeEEEEEec--cc--ccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcC-CCCCCeEEEEeeecCc
Q 028860 72 AGIPLLTMRQK--SF--KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNII-GKRAPDFYVTGSFTSL 146 (202)
Q Consensus 72 ~G~~L~~i~~k--~~--s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~-~~~~~~~~v~G~~~~~ 146 (202)
+|...+.|+|. .+ ++.++|.+|..++. ++.|...||.. .....++-+........ +...--=+++.|+++.
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~---~~fLLaarK~k-~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGt 111 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDTEK---KVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGN 111 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECSSS---CEEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSS
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeCCC---CEEEEEEEecc-CCCCceEEEEecchhcccCCceEEEEEEEccCCC
Confidence 45556788653 22 35689999986432 34455555432 11124555554432210 1111133467899999
Q ss_pred eeEEEECC---------------eEEEEEEeeeeccceeeeceeeEEEEE
Q 028860 147 SFKVYRGK---------------TVLCQVANHNYTWGSICKGKENFKVRV 181 (202)
Q Consensus 147 ~~~I~~~~---------------~~va~v~~~~~~~~~~~~~~d~Y~v~V 181 (202)
.|.||+.| +.+|.|+ -..+.. -..+.....+.|
T Consensus 112 kF~iyD~G~~p~~~~s~~~~~~r~el~~V~-Ye~nvl-g~~gPR~m~v~i 159 (276)
T 2fim_A 112 RFTVFDNGQNPQRGYSTNVASLRQELAAVI-YETNVL-GFRGPRRMTVII 159 (276)
T ss_dssp EEEEECSSBCGGGCTTSCGGGBCCEEEEEE-EC----------CCEEEEE
T ss_pred EEEEECCCCCcccccCcccccccEEEEEEE-EEeccc-CCCCCeEEEEEe
Confidence 99999875 7788883 322221 123455666666
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=61.04 E-value=60 Score=25.69 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=51.5
Q ss_pred eEEEEEec--cc--ccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcC-CCCCCeEEEEeeecCceeE
Q 028860 75 PLLTMRQK--SF--KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNII-GKRAPDFYVTGSFTSLSFK 149 (202)
Q Consensus 75 ~L~~i~~k--~~--s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~-~~~~~~~~v~G~~~~~~~~ 149 (202)
.-+.|+|. .+ ++.++|.+|..++. +..|...||.. ..-..++-+........ +...--=+++.|+++..|.
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~~~~~---~~fLlaark~~-~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~ 90 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHLDTEK---KVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFT 90 (246)
T ss_dssp EEEEEEECC------CCCEEEEEESSSS---CCEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCCC---cEEEEeeeecc-CCCCceEEEEeCccccccCCceEEEEEEEccCCCEEE
Confidence 34777662 22 35688888876532 33455555432 11124455554332210 1111123467799999999
Q ss_pred EEECC---------------eEEEEEEeeeeccceeeeceeeEEEEE
Q 028860 150 VYRGK---------------TVLCQVANHNYTWGSICKGKENFKVRV 181 (202)
Q Consensus 150 I~~~~---------------~~va~v~~~~~~~~~~~~~~d~Y~v~V 181 (202)
||+.| +.+|.| .-..+.. -..+.....+.+
T Consensus 91 iyD~g~~p~~~~s~~~~~~r~el~~v-~Ye~n~l-~~~gPR~m~v~i 135 (246)
T 3c5n_A 91 VFDNGQNPQRGYSTNVASLRQELAAV-IYETNVL-GFRGPRRMTVII 135 (246)
T ss_dssp EECSCBCGGGCTTSCGGGBCCEEEEE-EECCCCC-C---CCCEEEEE
T ss_pred EECCCCCcccccCcccccccEEEEEE-EEEeccc-CCCCCeEEEEEe
Confidence 99875 778888 3332221 123456666666
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=53.99 E-value=7.2 Score=19.43 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=10.0
Q ss_pred EEEECCCCCeEEEE
Q 028860 66 RVMRDPAGIPLLTM 79 (202)
Q Consensus 66 ~~l~D~~G~~L~~i 79 (202)
-.|+|.+|+++.++
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 46777777777766
No 6
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=50.38 E-value=29 Score=23.37 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=4.5
Q ss_pred CCCEEEEc
Q 028860 39 NAHYDVFD 46 (202)
Q Consensus 39 ~~~f~V~D 46 (202)
++.+.+++
T Consensus 28 DgNLvly~ 35 (105)
T 4h3o_A 28 DCNLVLYD 35 (105)
T ss_dssp TSCEEEEE
T ss_pred CCeEEEEE
Confidence 44566665
No 7
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=43.99 E-value=60 Score=20.61 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCCCCCCeeeEeccc--c-cCC-ccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEec
Q 028860 5 GWDYGVPIINIVGEN--F-CVP-YTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG 57 (202)
Q Consensus 5 ~~~~~~~~~~vv~~~--~-~~~-~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g 57 (202)
-|+|+...-+.|... | |-+ --..=.|-+++-|+.= +|.|.|++|.+-|.=+.
T Consensus 9 yWsYp~gl~VeIN~NAkygcPhhVGrkGkIie~~hSa~Y-DYaVsdetGdIt~fKEh 64 (84)
T 2heq_A 9 YWSYPVGLAVEINNNARYGCPHHVGRKGKIIEHLHSATY-DYAVSDETGDITYFKEH 64 (84)
T ss_dssp SCCSCTTCEEEECTTCTTTSTTCCSSEEEEEEECCCSSC-SEEEEETTSCEEEECGG
T ss_pred ccccCCCCEEEEcCCcccCCccccccccchhhhhhhhee-eeeeecccCceeeeecc
Confidence 489998877776544 1 111 1122344466777766 89999999999876443
No 8
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=36.93 E-value=20 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=8.1
Q ss_pred eEEEECCCCCeEEEEE
Q 028860 65 KRVMRDPAGIPLLTMR 80 (202)
Q Consensus 65 ~~~l~D~~G~~L~~i~ 80 (202)
.+.|+|++|+.+-++.
T Consensus 42 ~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 42 NFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEECSSCCEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 3455555555554443
No 9
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=34.05 E-value=50 Score=21.40 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=22.1
Q ss_pred CCCEEEEEeccCCCcCCeEEEECCCC-CeEEEE
Q 028860 48 SGNLLLQVDGSLWKFQKKRVMRDPAG-IPLLTM 79 (202)
Q Consensus 48 ~G~~v~~V~g~~~s~~~~~~l~D~~G-~~L~~i 79 (202)
+|.....++.+ |+.++.++++.++| +.-+++
T Consensus 19 ~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 19 TGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp TTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred CCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 36666666666 67899999999998 433444
No 10
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=32.23 E-value=1.2e+02 Score=23.45 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=33.4
Q ss_pred CCEEEEcCCCCEEEEEeccC-----------CCcCCeEEEECCCCCeEEEEEecc-cccCCeEEEE
Q 028860 40 AHYDVFDISGNLLLQVDGSL-----------WKFQKKRVMRDPAGIPLLTMRQKS-FKWRKEWTVH 93 (202)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~~-----------~s~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~i~ 93 (202)
+.+.|+|++|+++..+.-+. ....-...++|.+|+.|+.-|... ..+.+.|.+-
T Consensus 27 E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p 92 (235)
T 2dho_A 27 EMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNT 92 (235)
T ss_dssp CEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESS
T ss_pred cEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEec
Confidence 37899999999999985321 111223457788887776544322 2345678753
No 11
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=31.98 E-value=55 Score=23.87 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=18.0
Q ss_pred CEEEEcCCCCEEEEEeccCCC-------cCCeEEEECCCCCeEEEEEecc-cccCCeEEE
Q 028860 41 HYDVFDISGNLLLQVDGSLWK-------FQKKRVMRDPAGIPLLTMRQKS-FKWRKEWTV 92 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s-------~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~i 92 (202)
-++|+|++|+++..+...... ..-...+++.+|+.|+.-|... ..+...|.+
T Consensus 5 ~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 5 HVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp --------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred EEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 688999999988876543322 1234567787887666544332 234678887
No 12
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=30.28 E-value=28 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=7.5
Q ss_pred EEEEcCCCCEEEEEe
Q 028860 42 YDVFDISGNLLLQVD 56 (202)
Q Consensus 42 f~V~D~~G~~v~~V~ 56 (202)
..|+|++|++|.++.
T Consensus 41 v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 41 VNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEE
Confidence 445555555555543
No 13
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=28.88 E-value=87 Score=23.04 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=35.4
Q ss_pred CeeeEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCE-----------EEEEeccC-CCcCCeEEEECCCCCeEEE
Q 028860 11 PIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNL-----------LLQVDGSL-WKFQKKRVMRDPAGIPLLT 78 (202)
Q Consensus 11 ~~~~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~-----------v~~V~g~~-~s~~~~~~l~D~~G~~L~~ 78 (202)
|.+++|+...|-.+-+--+=+- ....+=+.|.|..| . +|-|+... ......+.++|++|+.++.
T Consensus 59 ~vm~iv~N~g~V~E~~G~~~~~---~~~~~w~Nv~~~~g-~~~hL~~~~~~~~~~V~kp~~~g~~~SlqfFd~~G~~i~k 134 (164)
T 2ovi_A 59 NVTTLVHTADVILEFSGELPSG---FHRHGYFNLRGKHG-MSGHIKAENCTHIALIERKFMGMDTASILFFNKEGSAMLK 134 (164)
T ss_dssp EEEEEEECSSEEEEEEEECCCE---EEETTEEEECCBTT-EEEEECGGGCCEEEEEEEEETTEEEEEEEEECTTSSEEEE
T ss_pred cEEEEEcCCCEEEEEEcccCCc---ccCCceEeccCCcc-cccccchhhCcEEEEEEeecCCCcEEEEEEECCCCCEEEE
Confidence 8899999998876543333111 11122345555555 3 22222211 1235667788888877766
Q ss_pred E
Q 028860 79 M 79 (202)
Q Consensus 79 i 79 (202)
|
T Consensus 135 i 135 (164)
T 2ovi_A 135 I 135 (164)
T ss_dssp E
T ss_pred E
Confidence 5
No 14
>3fm2_A Uncharacterized protein, distantly related to A H binding/degrading HEMS (PF05171)...; structural genomics; HET: MSE; 1.80A {Anabaena variabilis atcc 29413}
Probab=24.50 E-value=1.8e+02 Score=20.62 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=38.3
Q ss_pred CCeeeEecccccCCccEEEE--------EEEEeeeE-eC-CCEEEEcCCCCEEEEEeccC-CC--cCCeEEEECCCCCeE
Q 028860 10 VPIINIVGENFCVPYTMEML--------VKKRIQGM-SN-AHYDVFDISGNLLLQVDGSL-WK--FQKKRVMRDPAGIPL 76 (202)
Q Consensus 10 ~~~~~vv~~~~~~~~~~~l~--------ik~k~~~~-~~-~~f~V~D~~G~~v~~V~g~~-~s--~~~~~~l~D~~G~~L 76 (202)
++.++||...+|..+.+--+ -+.+...+ ++ =+..++=++=.-+|-|.... .. .+..+.++|.+|+.+
T Consensus 17 G~V~~Itrn~~aVhE~~G~y~~~~~~~~p~g~~~~~~~~~idlrlf~~~w~~~~~v~~~~~~G~~~~~SiqFFD~~G~av 96 (135)
T 3fm2_A 17 GTLRLIVTSSAAVLEARGKIEKLFYAELAKGKYANMHTEGFEFHLNMEKITQVKFETGEAKRGNFTTYAIRFLDEKQESA 96 (135)
T ss_dssp CEEEEEEECSSEEEEEEEESCSCEEEEETTEEEEEEECSSEEEEEEGGGCCEEEEEEEECTTTCCEEEEEEEECTTSCEE
T ss_pred CceEEEEeCCCEEEEEEccccceecccCCCCeEEEecCCCeeEEEEhhHeeEEEEEEecccCCCcceEEEEEECCCCCEE
Confidence 56778888888766554443 11121111 11 13344434444555565432 11 356788889998887
Q ss_pred EEEE
Q 028860 77 LTMR 80 (202)
Q Consensus 77 ~~i~ 80 (202)
+.|-
T Consensus 97 ~Kvy 100 (135)
T 3fm2_A 97 LSLF 100 (135)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 15
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=24.28 E-value=1e+02 Score=24.25 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=26.6
Q ss_pred ceeEEEEC---CeEEEEEEeeeeccceeeeceeeEEEEEcCCCCH--HHHHHH
Q 028860 146 LSFKVYRG---KTVLCQVANHNYTWGSICKGKENFKVRVHPEVDY--SFITAL 193 (202)
Q Consensus 146 ~~~~I~~~---~~~va~v~~~~~~~~~~~~~~d~Y~v~V~pg~D~--~li~al 193 (202)
.+|+++.. +.+|.+. .|. ++|.|+++..--.-. ||.+||
T Consensus 199 KNFqLv~~~~~~~ivlqF-GKv--------~~d~FtmD~~yPlS~~QAFaI~L 242 (246)
T 3c5n_A 199 KNFQIVHADDPDYIVLQF-GRV--------AEDAFTLDYRYPLCALQAFAIAL 242 (246)
T ss_dssp TCEEEEBTTBTTSCSEEE-EEE--------ETTEEEEEEETTCCHHHHHHHHH
T ss_pred ceEEEEecCCCCEEEEEE-EEe--------cCCeEEEEecCCCCHHHHHHHHH
Confidence 36888875 4567777 553 689999999865543 444444
No 16
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=23.20 E-value=1.4e+02 Score=23.20 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=32.5
Q ss_pred CCEEEEcCCCCEEEEEeccC-----------CCcCCeEEEECCCCCeEEEEEecc-cccCCeEEE
Q 028860 40 AHYDVFDISGNLLLQVDGSL-----------WKFQKKRVMRDPAGIPLLTMRQKS-FKWRKEWTV 92 (202)
Q Consensus 40 ~~f~V~D~~G~~v~~V~g~~-----------~s~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~i 92 (202)
+.+.|+|++|+++..+.-+. ....-...++|.+|+.|+.-|... ..+.+.|.+
T Consensus 38 E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~ 102 (246)
T 2pny_A 38 EMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246)
T ss_dssp CEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC
T ss_pred ceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEe
Confidence 37899999999999975421 111223457888887766544322 234556764
No 17
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=22.57 E-value=65 Score=17.69 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=9.7
Q ss_pred cCCCCEEEEEec
Q 028860 46 DISGNLLLQVDG 57 (202)
Q Consensus 46 D~~G~~v~~V~g 57 (202)
+++|+.|++.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 689999998763
No 18
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=22.40 E-value=54 Score=20.37 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.7
Q ss_pred EEEcCCCCHHHHHHHHhh
Q 028860 179 VRVHPEVDYSFITALLVI 196 (202)
Q Consensus 179 v~V~pg~D~~li~al~v~ 196 (202)
|-+.||.|.+|-++.+|-
T Consensus 28 lgvgpGFDAALqvSa~Ig 45 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIG 45 (75)
T ss_dssp CEECCCCCHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHH
Confidence 468899999999887763
No 19
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.16 E-value=1.8e+02 Score=19.39 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=10.1
Q ss_pred eCCCEEEEcCC-CCEEEE
Q 028860 38 SNAHYDVFDIS-GNLLLQ 54 (202)
Q Consensus 38 ~~~~f~V~D~~-G~~v~~ 54 (202)
.++...++|.. ++++..
T Consensus 32 ~dGNLvL~~~~~~~~vWs 49 (113)
T 3mez_B 32 DDCNLVLTKGSKTNIVWE 49 (113)
T ss_dssp TTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCEEEEE
Confidence 35578888764 444433
No 20
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=21.55 E-value=94 Score=22.82 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=20.2
Q ss_pred EEEEcCCCCEEEEEeccCCC----------cCCeEEEECCCCCeEEEEEec
Q 028860 42 YDVFDISGNLLLQVDGSLWK----------FQKKRVMRDPAGIPLLTMRQK 82 (202)
Q Consensus 42 f~V~D~~G~~v~~V~g~~~s----------~~~~~~l~D~~G~~L~~i~~k 82 (202)
...+|++|++.|++.+..+. -.-.+.+++..|.+..+|+.+
T Consensus 33 ~~~~d~~G~l~~~l~A~~~~hy~~~~~t~~~~P~~~~y~~~~~~~w~i~A~ 83 (175)
T 3my2_A 33 TLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD 83 (175)
T ss_dssp ----------CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECS
T ss_pred EEEECCCCCEEEEEEeeeEEEecCCCCEEEeccEEEEECCCCceeEEEEeC
Confidence 35789999999999985421 144566777776677777653
No 21
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=21.19 E-value=2e+02 Score=20.24 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=33.5
Q ss_pred CCCEEEEcCCCCEEEEEeccC------CCcCCeEEEECCCCCeEEEEEecccc-cCCeEEE
Q 028860 39 NAHYDVFDISGNLLLQVDGSL------WKFQKKRVMRDPAGIPLLTMRQKSFK-WRKEWTV 92 (202)
Q Consensus 39 ~~~f~V~D~~G~~v~~V~g~~------~s~~~~~~l~D~~G~~L~~i~~k~~s-~~~~~~i 92 (202)
+.-++|+|.+|+.+.....+. ....-...++|.+|+.|+.-|...-. +.+.|.+
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 436899999999998876321 11233456678888877743333222 3566876
Done!