Query 028860
Match_columns 202
No_of_seqs 117 out of 673
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 05:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028860.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028860hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q4ma1 d.23.1.2 (A:24-212) Hy 100.0 4.4E-47 3.2E-51 298.8 20.0 184 14-201 3-188 (189)
2 d2q4ma1 d.23.1.2 (A:24-212) Hy 98.2 9.7E-06 7.1E-10 61.3 12.5 98 48-153 12-113 (189)
3 d2fkba1 d.113.1.2 (A:8-168) Hy 48.2 17 0.0012 24.5 5.4 56 41-96 4-66 (161)
4 d1smpi_ b.61.2.1 (I:) Metallop 47.8 30 0.0022 22.0 6.7 39 62-110 61-99 (100)
5 d2o5fa1 d.113.1.2 (A:7-168) Hy 43.1 24 0.0018 23.6 5.6 53 41-93 2-61 (162)
6 d1c8za_ d.23.1.1 (A:) Transcri 41.5 54 0.0039 24.4 7.8 79 73-154 22-106 (265)
7 d2vzsa3 b.1.4.1 (A:675-777) Ex 36.2 46 0.0033 20.8 6.1 39 6-56 6-44 (103)
8 d1c8za_ d.23.1.1 (A:) Transcri 27.8 38 0.0028 25.2 4.8 40 146-194 212-256 (265)
9 d1e0na_ b.72.1.1 (A:) Hypothet 25.5 31 0.0023 16.1 2.4 17 41-57 2-18 (27)
10 d1jpca_ b.78.1.1 (A:) Lectin ( 25.4 72 0.0052 19.7 5.6 15 64-78 60-74 (108)
11 d2dg1a1 b.68.6.1 (A:6-324) Lac 23.2 63 0.0046 23.7 5.5 18 63-80 248-265 (319)
12 d1dlpa2 b.78.1.1 (A:116-235) F 20.5 99 0.0072 19.5 5.8 9 39-47 44-52 (120)
13 d2oq0a1 b.40.16.1 (A:115-202) 20.1 60 0.0043 19.9 3.7 30 41-70 32-65 (88)
No 1
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=4.4e-47 Score=298.75 Aligned_cols=184 Identities=36% Similarity=0.707 Sum_probs=145.1
Q ss_pred eEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEecccccCCeEEEE
Q 028860 14 NIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVH 93 (202)
Q Consensus 14 ~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~ 93 (202)
+||+||||++.|++|+||||.+++++++|+|+|++|+++|+|+|+.+++++++.|+|++|+||++||+|.++++++|++|
T Consensus 3 ~vv~~~~~~~~~~~L~V~~K~~~~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~~l~D~~G~~L~~i~~k~~s~~~~w~v~ 82 (189)
T d2q4ma1 3 VVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVF 82 (189)
T ss_dssp CSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSBTTBTTEEEEECTTSCEEEEEEC------CEEEEE
T ss_pred eEEChhHccCCceEEEEEEeeeeeeCCceEEEeCCCCEEEEEecccCCCCCeEEEECCCCCEEEEEEeeccccCceEEEE
Confidence 57899999999999999999999987799999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEeeecCceeEEEEC--CeEEEEEEeeeeccceee
Q 028860 94 PGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVANHNYTWGSIC 171 (202)
Q Consensus 94 ~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~--~~~va~v~~~~~~~~~~~ 171 (202)
++++.+. .++++++|+.+++..+.++++++++... ++. ++|+|+|+|++++|+|+++ |++||+|++++ ...+++
T Consensus 83 ~~~~~~~-~~~~~~~kk~~~~~~~~~~~v~~~~~~~-~~~-~~~~i~G~~~~~~~~i~~~~~~~~VAeV~rk~-~~~~~~ 158 (189)
T d2q4ma1 83 RGGSTDQ-RDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKR-CDFRVKGSWLERSCVVYAGESDAIVAQMHRKH-TVQSVF 158 (189)
T ss_dssp ETTCCCG-GGEEEEEEC-------CCEEEEETTCCC--CC-CSEEEESCTTTTCCEEEEGGGCCEEEEEEEC--------
T ss_pred ECCCCCc-cceEEEEEeeeeeeccccEEEEeccCCC-CCc-ceEEEEeeeccceEEEEECCCCcEEEEEEEee-eeeeEe
Confidence 9987655 6789999998877788999999877643 333 5999999999999999985 89999996654 456678
Q ss_pred eceeeEEEEEcCCCCHHHHHHHHhhhhccc
Q 028860 172 KGKENFKVRVHPEVDYSFITALLVILEENE 201 (202)
Q Consensus 172 ~~~d~Y~v~V~pg~D~~li~al~v~lD~~~ 201 (202)
.++|+|.|+|+||+|.+|++||++|||+|+
T Consensus 159 ~g~d~y~l~V~pg~D~ali~alvv~lD~i~ 188 (189)
T d2q4ma1 159 LGKDNFSVTVYPNVDYAFIASLVVILDDVN 188 (189)
T ss_dssp -CBCSEEEEECTTSBHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999986
No 2
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.24 E-value=9.7e-06 Score=61.33 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=65.3
Q ss_pred CCCEEEEEeccCCCcC-CeEEEECCCCCeEEEEEecccccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecC
Q 028860 48 SGNLLLQVDGSLWKFQ-KKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPN 126 (202)
Q Consensus 48 ~G~~v~~V~g~~~s~~-~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~ 126 (202)
.....+.|..|.++++ +.++|+|++|+++++++.+.++++++..++++.+ ++|++|+++ .+.+.++|.++.++
T Consensus 12 ~~~~~L~V~~K~~~~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~~l~D~~G-----~~L~~i~~k-~~s~~~~w~v~~~~ 85 (189)
T d2q4ma1 12 PYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSG-----TPVVTLREK-MVSMHDRWQVFRGG 85 (189)
T ss_dssp SSCEEEEEECC-----CCCEEEEETTSCEEEEEECSBTTBTTEEEEECTTS-----CEEEEEEC-------CEEEEEETT
T ss_pred CCceEEEEEEeeeeeeCCceEEEeCCCCEEEEEecccCCCCCeEEEECCCC-----CEEEEEEee-ccccCceEEEEECC
Confidence 3455699999998885 7899999999999999999899999999999874 689999875 34567899999877
Q ss_pred CCcCCCCCCeEEEEee-e--cCceeEEEEC
Q 028860 127 NNIIGKRAPDFYVTGS-F--TSLSFKVYRG 153 (202)
Q Consensus 127 ~~~~~~~~~~~~v~G~-~--~~~~~~I~~~ 153 (202)
... + ..+.+.++-. + ...++.|+.+
T Consensus 86 ~~~-~-~~~~~~~kk~~~~~~~~~~~v~~~ 113 (189)
T d2q4ma1 86 STD-Q-RDLLYTVKRSSMLQLKTKLDVFLG 113 (189)
T ss_dssp CCC-G-GGEEEEEEC-------CCEEEEET
T ss_pred CCC-c-cceEEEEEeeeeeeccccEEEEec
Confidence 542 2 2235665542 1 3456676654
No 3
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}
Probab=48.22 E-value=17 Score=24.54 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=36.8
Q ss_pred CEEEEcCCCCEEEEEeccC------CCcCCeEEEECCCCCeEEEEEeccc-ccCCeEEEEeCC
Q 028860 41 HYDVFDISGNLLLQVDGSL------WKFQKKRVMRDPAGIPLLTMRQKSF-KWRKEWTVHPGE 96 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~------~s~~~~~~l~D~~G~~L~~i~~k~~-s~~~~~~i~~~~ 96 (202)
-++|+|++|+++-.+.-.. ....-...++|.+|+.|+.-|.... .+.+.|...-+|
T Consensus 4 ~~~i~d~~~~~ig~~~R~~~~~~~~~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG 66 (161)
T d2fkba1 4 WVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGG 66 (161)
T ss_dssp EEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCC
T ss_pred EEEEECCCCCEEeEEEHHHhhcCCCcEeEEEEEEEeCCCCEEEEEecCccccccccccccccc
Confidence 6899999999998876321 1223446678999987765554332 245678775444
No 4
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=47.80 E-value=30 Score=21.96 Aligned_cols=39 Identities=8% Similarity=0.141 Sum_probs=30.5
Q ss_pred cCCeEEEECCCCCeEEEEEecccccCCeEEEEeCCCCCCCCceEEEEEc
Q 028860 62 FQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQ 110 (202)
Q Consensus 62 ~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~~~~~~~~l~tik~ 110 (202)
-++-+.|+|++|.-|..+.|. ...|+...+++. .-+++|
T Consensus 61 tPDGiaLt~~~Gs~i~ffsR~----~egY~~~l~~g~------~l~L~R 99 (100)
T d1smpi_ 61 TPDGLTLTQADGSAVAFFSRN----RDRYEHKLVDGS------VRTLKK 99 (100)
T ss_dssp CSSEEEEECTTSCEEEEEEEE----TTEEEEECTTCC------EEEEEE
T ss_pred CCCeEEEecCCCCeEEeeeec----CcceeEEcCCCC------EEEEec
Confidence 388899999999999999876 345888888764 566654
No 5
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}
Probab=43.10 E-value=24 Score=23.63 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=32.5
Q ss_pred CEEEEcCCCCEEEEEeccCCC------cCCeEEEECCCCCeEEEEEecc-cccCCeEEEE
Q 028860 41 HYDVFDISGNLLLQVDGSLWK------FQKKRVMRDPAGIPLLTMRQKS-FKWRKEWTVH 93 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s------~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~i~ 93 (202)
.+++.|++|+++.++.-.... ..-...|+|.+|+.|+.-|... -.+.+.|...
T Consensus 2 ~~d~vd~~~~~~g~~~r~~~~~~~~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~ 61 (162)
T d2o5fa1 2 RLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVS 61 (162)
T ss_dssp EEEEECTTSCEEEEEETTCTTCCGGGSEEEEEEEECTTSCEEEEEC-------CCSBCCS
T ss_pred cEEEECCCCCEEEEEEHHHHhhCCCeEEEEEEEEEcCCCCEEEEEeccCccccccccccc
Confidence 589999999999987653221 1334578899999776544322 2245677654
No 6
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.46 E-value=54 Score=24.35 Aligned_cols=79 Identities=8% Similarity=0.036 Sum_probs=43.5
Q ss_pred CCeEEEEEecc----cccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcC--CCCCCeEEEEeeecCc
Q 028860 73 GIPLLTMRQKS----FKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNII--GKRAPDFYVTGSFTSL 146 (202)
Q Consensus 73 G~~L~~i~~k~----~s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~--~~~~~~~~v~G~~~~~ 146 (202)
|-.-+.|+|.. .++.++|..|...+... .+.+...||.. .....++-+........ .+.. -=+++.||++.
T Consensus 22 ~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~gk-~kfLLaArK~r-~~~~~~yiIS~~~~d~sr~s~~y-vGKlrSNflGT 98 (265)
T d1c8za_ 22 ITIKCRITRDKKGMDRGMFPTYFLHLDREDGK-KVFLLAGRKRK-KSKTSNYLISVDPTDLSRGGDSY-IGKLRSNLMGT 98 (265)
T ss_dssp CCEEEEEEECSSCSSSSCCCEEEEEEECTTSC-EEEEEEEEEEE-SSSSEEEEEESCHHHHTTTCCCC-SEEEEECTTSS
T ss_pred CcEEEEEEEccCCCcCccceeEEEEEccCCCc-eeEEEEEeeec-CCCcceEEEEccHHHhcccccce-eEEeeccccCC
Confidence 44457887632 24678999988654321 33555555432 11123444443321110 1122 34578899999
Q ss_pred eeEEEECC
Q 028860 147 SFKVYRGK 154 (202)
Q Consensus 147 ~~~I~~~~ 154 (202)
.|.|||.|
T Consensus 99 kF~iYD~G 106 (265)
T d1c8za_ 99 KFTVYDNG 106 (265)
T ss_dssp EEEEECSS
T ss_pred EEEEecCC
Confidence 99999864
No 7
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=36.17 E-value=46 Score=20.82 Aligned_cols=39 Identities=3% Similarity=0.085 Sum_probs=22.6
Q ss_pred CCCCCCeeeEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEe
Q 028860 6 WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVD 56 (202)
Q Consensus 6 ~~~~~~~~~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~ 56 (202)
++|....|.||...+..... +. . .-+|+|-+|+.+|.=.
T Consensus 6 ~n~~~~~V~VVN~t~~~~~~--~~-------v---~a~v~Dl~Gk~~~~~~ 44 (103)
T d2vzsa3 6 YSHDNRSVVVINQTSNAVSG--LT-------A---TTKLYNLDGTEKYSNT 44 (103)
T ss_dssp ECTTTCEEEEEECSSSCEEE--EE-------E---EEEEEETTSCEEEEEE
T ss_pred EcCCCCEEEEEECCCcccCC--eE-------E---EEEEEeCCCCEEEEEE
Confidence 46666777776665432211 11 1 3477788888887544
No 8
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.82 E-value=38 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=26.8
Q ss_pred ceeEEEEC---CeEEEEEEeeeeccceeeeceeeEEEEEcCCCCH--HHHHHHH
Q 028860 146 LSFKVYRG---KTVLCQVANHNYTWGSICKGKENFKVRVHPEVDY--SFITALL 194 (202)
Q Consensus 146 ~~~~I~~~---~~~va~v~~~~~~~~~~~~~~d~Y~v~V~pg~D~--~li~al~ 194 (202)
.+|.+++. ++.|.++ .|. +++.|++++..-.-. ||.+||+
T Consensus 212 KNFql~~~~~~~~~~lqf-gKv--------~~~~f~~d~~~Pls~~qaF~i~ls 256 (265)
T d1c8za_ 212 KNFQIIHGNDPDYIVMQF-GRV--------AEDVFTMDYNYPLCALQAFAIALS 256 (265)
T ss_dssp TEEEEECTTCTTSCSEEE-EEE--------ETTEEEEEECTTCCHHHHHHHHHH
T ss_pred ceEEEEeCCCCCEEEEEE-EEc--------cCCeEEEEecCCCCHHHHHHHHHH
Confidence 46777743 5677777 553 679999999866654 4555544
No 9
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.50 E-value=31 Score=16.11 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=12.3
Q ss_pred CEEEEcCCCCEEEEEec
Q 028860 41 HYDVFDISGNLLLQVDG 57 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g 57 (202)
.+.|.-++|+++|.=..
T Consensus 2 gweiihengrpmyynaq 18 (27)
T d1e0na_ 2 GWEIIHENGRPLYYNAE 18 (27)
T ss_dssp CEEEEESSSSEEEEETT
T ss_pred CceeeecCCceeeeehh
Confidence 46777788888887543
No 10
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]}
Probab=25.36 E-value=72 Score=19.67 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.9
Q ss_pred CeEEEECCCCCeEEE
Q 028860 64 KKRVMRDPAGIPLLT 78 (202)
Q Consensus 64 ~~~~l~D~~G~~L~~ 78 (202)
..+.|+|.+|.++..
T Consensus 60 Gnlvl~~~~g~~vWs 74 (108)
T d1jpca_ 60 GNLVVYNPSNKPIWA 74 (108)
T ss_dssp SCEEEECTTCCEEEE
T ss_pred ceEEEECCCccceEE
Confidence 345555555555543
No 11
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}
Probab=23.15 E-value=63 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.7
Q ss_pred CCeEEEECCCCCeEEEEE
Q 028860 63 QKKRVMRDPAGIPLLTMR 80 (202)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~ 80 (202)
..++..+|++|+.|.+|.
T Consensus 248 ~g~V~~~~p~G~~l~~i~ 265 (319)
T d2dg1a1 248 QGRVLVFNKRGYPIGQIL 265 (319)
T ss_dssp TTEEEEECTTSCEEEEEE
T ss_pred CCEEEEECCCCcEEEEEe
Confidence 345555555555555554
No 12
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Probab=20.52 E-value=99 Score=19.48 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.4
Q ss_pred CCCEEEEcC
Q 028860 39 NAHYDVFDI 47 (202)
Q Consensus 39 ~~~f~V~D~ 47 (202)
++...++|.
T Consensus 44 DGNLvL~~~ 52 (120)
T d1dlpa2 44 DCNLVLFDR 52 (120)
T ss_dssp TTEEEEEBT
T ss_pred CCcEEEecC
Confidence 445555543
No 13
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.06 E-value=60 Score=19.90 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=22.3
Q ss_pred CEEEEcCCCCEEEEEeccCCCc----CCeEEEEC
Q 028860 41 HYDVFDISGNLLLQVDGSLWKF----QKKRVMRD 70 (202)
Q Consensus 41 ~f~V~D~~G~~v~~V~g~~~s~----~~~~~l~D 70 (202)
-|.|.|..|+.-.-|.|++-.+ ++++.|+=
T Consensus 32 ~YeI~D~TG~MeVvv~G~~~ni~CeeGDKLrL~c 65 (88)
T d2oq0a1 32 IYEIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFC 65 (88)
T ss_dssp EEEEEETTEEEEEEEEGGGSSCCCCTTCEEEEEE
T ss_pred EEEEecCCCcEEEEEeccEeecccCCCCeEEEEE
Confidence 4666788999998899987655 66666653
Done!