Query 028861
Match_columns 202
No_of_seqs 17 out of 19
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 05:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028861.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028861hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 29.0 19 0.0014 24.4 2.8 28 38-65 16-43 (67)
2 d1h8ua_ d.169.1.1 (A:) Eosinop 11.1 44 0.0032 21.4 1.3 18 45-62 3-20 (115)
3 d1hupa1 d.169.1.1 (A:112-228) 11.0 48 0.0035 21.1 1.5 22 42-63 6-27 (117)
4 d1xfia_ e.50.1.1 (A:) Hypothet 9.9 66 0.0048 26.7 2.3 10 25-34 4-13 (360)
5 d1dv8a_ d.169.1.1 (A:) H1 subu 8.4 84 0.0061 19.6 1.9 19 44-62 13-31 (128)
6 d3bdwa1 d.169.1.1 (A:59-179) C 8.2 86 0.0063 19.6 1.9 20 43-62 14-33 (121)
7 d2fcia1 d.93.1.1 (A:1-105) Pho 7.6 71 0.0052 21.0 1.3 11 29-39 95-105 (105)
8 d1wiha_ d.67.3.1 (A:) Ribosome 7.2 62 0.0045 21.6 0.8 14 28-41 69-84 (84)
9 d2vnud1 b.40.4.5 (D:400-494) E 6.9 79 0.0058 20.8 1.3 23 12-34 18-40 (95)
10 d1vk2a_ c.18.1.2 (A:) Thermoph 6.9 1.8E+02 0.013 20.4 3.4 30 72-107 77-106 (191)
No 1
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.99 E-value=19 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCCCCceeeecChhhHHHHHHHHhHhHH
Q 028861 38 PSSGSYLLAFRSHQSWASAYESCESKVL 65 (202)
Q Consensus 38 pS~gp~vLAFrd~~SW~~a~~~cE~~i~ 65 (202)
|.++||+..|++-..=.+..+.|..+|-
T Consensus 16 P~sepP~m~l~sV~diE~eLerCk~~ir 43 (67)
T d1k1fa_ 16 PDSEPPRMELRSVGDIEQELERAKASIR 43 (67)
T ss_dssp TTSCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhccHhHHHHHHHHHHHHHH
Confidence 5788899999999999999999999885
No 2
>d1h8ua_ d.169.1.1 (A:) Eosinophil major basic protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.05 E-value=44 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=14.8
Q ss_pred eeecChhhHHHHHHHHhH
Q 028861 45 LAFRSHQSWASAYESCES 62 (202)
Q Consensus 45 LAFrd~~SW~~a~~~cE~ 62 (202)
+.++...+|..|...|++
T Consensus 3 ~~~~~~~tw~~A~~~C~~ 20 (115)
T d1h8ua_ 3 LLVRSLQTFSQAWFTCRR 20 (115)
T ss_dssp EEEEEEECHHHHHHHHHH
T ss_pred EEECCccCHHHHHHHhhc
Confidence 347888999999999964
No 3
>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01 E-value=48 Score=21.08 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=18.0
Q ss_pred CceeeecChhhHHHHHHHHhHh
Q 028861 42 SYLLAFRSHQSWASAYESCESK 63 (202)
Q Consensus 42 p~vLAFrd~~SW~~a~~~cE~~ 63 (202)
-+.+.++...+|..|.+.|++.
T Consensus 6 ~~y~~~~~~~tw~~A~~~C~~~ 27 (117)
T d1hupa1 6 KFFLTNGEIMTFEKVKALCVKF 27 (117)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHT
T ss_pred EEEEEcCEEECHHHHHHHHHHC
Confidence 3567788888999999999763
No 4
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.89 E-value=66 Score=26.70 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=9.0
Q ss_pred CCcccccCCC
Q 028861 25 PIPLLRGPVP 34 (202)
Q Consensus 25 plPLlR~PvP 34 (202)
|+|||+-||+
T Consensus 4 ~~pll~~~~~ 13 (360)
T d1xfia_ 4 PFPQLPMPIE 13 (360)
T ss_dssp CCTTSCSCCT
T ss_pred cccccCCccc
Confidence 7899999987
No 5
>d1dv8a_ d.169.1.1 (A:) H1 subunit of the asialoglycoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.36 E-value=84 Score=19.64 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.6
Q ss_pred eeeecChhhHHHHHHHHhH
Q 028861 44 LLAFRSHQSWASAYESCES 62 (202)
Q Consensus 44 vLAFrd~~SW~~a~~~cE~ 62 (202)
...|....+|..|...|+.
T Consensus 13 Y~~~~~~~~w~~A~~~C~~ 31 (128)
T d1dv8a_ 13 YWFSRSGKAWADADNYCRL 31 (128)
T ss_dssp EEECSSCBCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHhh
Confidence 5668899999999999986
No 6
>d3bdwa1 d.169.1.1 (A:59-179) CD94 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.16 E-value=86 Score=19.59 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.2
Q ss_pred ceeeecChhhHHHHHHHHhH
Q 028861 43 YLLAFRSHQSWASAYESCES 62 (202)
Q Consensus 43 ~vLAFrd~~SW~~a~~~cE~ 62 (202)
-...|.+..+|..|-+.|+.
T Consensus 14 CY~~~~~~~~w~~A~~~C~~ 33 (121)
T d3bdwa1 14 CYFISSEQKTWNESRHLCAS 33 (121)
T ss_dssp EEEECSSCBCHHHHHHHHHH
T ss_pred EEEEEccccCHHHHHHHHhh
Confidence 46778889999999999986
No 7
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.65 E-value=71 Score=21.04 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.6
Q ss_pred cccCCCCCCCC
Q 028861 29 LRGPVPHDDPS 39 (202)
Q Consensus 29 lR~PvP~ddpS 39 (202)
||-|||..+||
T Consensus 95 L~~P~~~~~ps 105 (105)
T d2fcia1 95 LRYPINEENSS 105 (105)
T ss_dssp SCCCCCCTTTC
T ss_pred CCCCCCCCCCC
Confidence 78999988886
No 8
>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=7.24 E-value=62 Score=21.59 Aligned_cols=14 Identities=57% Similarity=1.080 Sum_probs=9.9
Q ss_pred ccccCCC--CCCCCCC
Q 028861 28 LLRGPVP--HDDPSSG 41 (202)
Q Consensus 28 LlR~PvP--~ddpS~g 41 (202)
++|+|+| ...|++|
T Consensus 69 ~Iri~iP~lT~~~~~~ 84 (84)
T d1wiha_ 69 LIRVPIPKVTSGPSSG 84 (84)
T ss_dssp EEEEECCCSSCSSCCC
T ss_pred EEEEECCCCCCCcCCC
Confidence 6888998 5566654
No 9
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=6.94 E-value=79 Score=20.79 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.9
Q ss_pred ccCccceeeeccCCCcccccCCC
Q 028861 12 EYSAASTVIKFDKPIPLLRGPVP 34 (202)
Q Consensus 12 dyS~sat~i~FD~plPLlR~PvP 34 (202)
.-+..+.++..|+-||.+++|.-
T Consensus 18 ~~~~~~~v~P~d~rip~i~I~~~ 40 (95)
T d2vnud1 18 SSTQNVFVILMDKCLPKVRIRTR 40 (95)
T ss_dssp CSCEEEEEEESSTTSCCEEEEET
T ss_pred CCcceEEEEECCCCCCceecccc
Confidence 33566899999999998887643
No 10
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=6.88 E-value=1.8e+02 Score=20.39 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=23.1
Q ss_pred ccccccccccccCCChhhhhhcCCCCCChhHHHHHH
Q 028861 72 ARIGCSVNASKKCKPPWWRNLIGQRPADFKEREDCE 107 (202)
Q Consensus 72 Ar~GCSIsASrkCkpPWWk~l~g~~~~d~~eRE~CE 107 (202)
.|..+.|+..-+|.|| +....+-+|...|.
T Consensus 77 ~~~~~~it~~~kc~pp------~~~~p~~~ei~~C~ 106 (191)
T d1vk2a_ 77 RREDVYICNVVKCRPP------NNRTPTPEEQAACG 106 (191)
T ss_dssp CGGGSEEEESCSSCCG------GGCCCCHHHHHHHH
T ss_pred cccCeEEEeeecccCc------cccccchHHHHHHH
Confidence 4678999999999987 45556667777776
Done!