BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028862
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
 pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
 pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Aspartic Acid
 pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Aspartic Acid
 pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Asparagine
 pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Asparagine
 pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Aspartic Acid And Adenosine
           Triphosphate
 pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Aspartic Acid And Adenosine
           Triphosphate
 pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With Adenosine Monophosphate
 pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With Adenosine Monophosphate
 pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Asparagine And Adenosine Monophosphate
 pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
           Complexed With L-Asparagine And Adenosine Monophosphate
          Length = 294

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 29/104 (27%)

Query: 74  IGCSVNASKKCKPPWWRNLIGQRPADFKEREDCEV--------------------REMEA 113
            G    AS + + P+W   I   P +F +RE+  V                    RE E 
Sbjct: 170 FGSDEKASMEMEEPFW---IVNIPREFYDREENGVWKNYDLILPYGYGEVSSGGEREWEY 226

Query: 114 CLIVAKDKCAGFAKDRLLRPFQDARIAGRVGPKE-----VEKLV 152
             IVAK + AG  +D   RP+ +   AG++ P       VE+LV
Sbjct: 227 EKIVAKIRAAGLKEDS-FRPYLEIARAGKLKPSAGAGIGVERLV 269


>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
          Length = 294

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 88  WWRNLIGQRPADFKEREDCEVREMEACLIVAKDKCAGFAKDRLLRPFQDARIAGRVGPKE 147
           +WRN     P  + E      RE E   IVAK + AG  +D   RP+ +   AG++ P  
Sbjct: 201 FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDS-FRPYLEIAKAGKLKPSA 259

Query: 148 -----VEKLV 152
                VE+LV
Sbjct: 260 GAGIGVERLV 269


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,422,033
Number of Sequences: 62578
Number of extensions: 248356
Number of successful extensions: 376
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 3
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)