BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028862
         (202 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P38523|GRPE_YEAST GrpE protein homolog, mitochondrial OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=MGE1 PE=1 SV=1
          Length = 228

 Score = 31.6 bits (70), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 104 EDCEVREMEACLIVAKDKCAGFAKDRLLRPFQDARIAGRVGPKEVEKLVCWA 155
           E  E++++E+ L  AK K A   KDRLLR   D R   +V  K+++K   +A
Sbjct: 63  EQSEIKKLESQL-SAKTKEASELKDRLLRSVADFRNLQQVTKKDIQKAKDFA 113


>sp|P30929|L_MUMPM RNA-directed RNA polymerase L OS=Mumps virus (strain Miyahara
            vaccine) GN=L PE=3 SV=1
          Length = 2261

 Score = 30.8 bits (68), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 76   CSVNASKKCKPPWWRNLIGQRPADFKEREDCEVREMEACLIVAKDKC 122
            CS++ ++  +   W  L+  RP +  E  D  +  +  CLI+  D+C
Sbjct: 1142 CSIDIARSLRKLSWATLLNGRPIEGLETPD-PIELVHGCLIIGSDEC 1187


>sp|Q60997|DMBT1_MOUSE Deleted in malignant brain tumors 1 protein OS=Mus musculus
           GN=Dmbt1 PE=1 SV=2
          Length = 2085

 Score = 30.4 bits (67), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 30  RGPVPHDDPSSGSY--LLAFRSHQSWASAYESCESKVLSQCEHGARIG--CSVNASKKCK 85
           +GP+  DD + G Y   L   SHQ W S            C H    G  CS + S    
Sbjct: 245 QGPIVLDDVACGGYENYLWSCSHQGWLS----------HNCGHQEDAGVICSASQSSSPT 294

Query: 86  PPWW 89
           P WW
Sbjct: 295 PGWW 298


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,614,592
Number of Sequences: 539616
Number of extensions: 3177728
Number of successful extensions: 5572
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5571
Number of HSP's gapped (non-prelim): 4
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)