Query 028862
Match_columns 202
No_of_seqs 17 out of 19
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 05:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k1f_A Breakpoint cluster regi 26.6 47 0.0016 24.3 2.8 29 38-66 16-44 (72)
2 1bhp_A Beta-purothionin; plant 17.7 48 0.0016 21.9 1.2 34 54-88 10-43 (45)
3 2kqs_B Death domain-associated 9.9 87 0.003 19.1 0.7 12 75-86 1-12 (26)
4 3fnb_A Acylaminoacyl peptidase 9.0 1.5E+02 0.005 24.1 1.9 33 50-82 58-90 (405)
5 2e1m_B L-glutamate oxidase; L- 7.1 1.1E+02 0.0038 23.1 0.4 10 19-28 22-31 (130)
6 1nbl_A Hellethionin D; gamma t 6.7 2.2E+02 0.0075 18.8 1.6 35 54-88 10-44 (46)
7 2msb_A Mannose-binding protein 6.4 2.3E+02 0.0077 18.8 1.6 21 42-62 4-24 (115)
8 1rdl_1 SUB-MBP-C, mannose-bind 6.3 2.6E+02 0.0088 18.5 1.9 19 44-62 4-22 (113)
9 1qdd_A Lithostathine; pancreat 6.0 3.2E+02 0.011 18.5 2.3 20 44-63 26-45 (144)
10 2kyj_A LITX; scorpion toxin, i 5.9 1.3E+02 0.0045 19.3 0.2 7 81-87 14-20 (36)
No 1
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=26.56 E-value=47 Score=24.32 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCCceeeecChhhHHHHHHHHhHhHHH
Q 028862 38 PSSGSYLLAFRSHQSWASAYESCESKVLS 66 (202)
Q Consensus 38 pS~gp~vLAFrd~~SW~~a~~~cE~~i~s 66 (202)
|.++||..+|++...=.+..+.|..+|-.
T Consensus 16 p~~epp~m~l~~vgdiEqeLe~Ck~sIrr 44 (72)
T 1k1f_A 16 PDSEPPRMELRSVGDIEQELERAKASIRR 44 (72)
T ss_dssp TTSCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHhHHhhhhHHHHHHHHHHHHHHH
Confidence 45668889999999999999999998853
No 2
>1bhp_A Beta-purothionin; plant toxin, thionins; 1.70A {Triticum aestivum} SCOP: g.13.1.1 PDB: 2plh_A 1wuw_A*
Probab=17.69 E-value=48 Score=21.91 Aligned_cols=34 Identities=12% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHHHHHHhHhHHHHhhhcccccccccccccCCChh
Q 028862 54 ASAYESCESKVLSQCEHGARIGCSVNASKKCKPPW 88 (202)
Q Consensus 54 ~~a~~~cE~~i~sQCEaGAr~GCSIsASrkCkpPW 88 (202)
|.-|..|-..-.++ .=+.-.||=|....+|.|+|
T Consensus 10 Rn~Yn~Cr~~g~s~-~Ca~~sgCki~sg~~Cp~~y 43 (45)
T 1bhp_A 10 RNCYNLCRARGAQK-LCANVCRCKLTSGLSCPKDF 43 (45)
T ss_dssp HHHHHHHTTTSCHH-HHHHHTTEEECSSSSCCTTS
T ss_pred hhhhhhhccCCCcH-HHHhhcCcEeCCCCcCcCCC
Confidence 55677787777677 77889999999999999987
No 3
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=9.91 E-value=87 Score=19.06 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=9.5
Q ss_pred cccccccccCCC
Q 028862 75 GCSVNASKKCKP 86 (202)
Q Consensus 75 GCSIsASrkCkp 86 (202)
||-++++++|.|
T Consensus 1 ~~kv~~~tqcdP 12 (26)
T 2kqs_B 1 GSKTSVATQCDP 12 (26)
T ss_pred CCcccccccCCc
Confidence 566888888887
No 4
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=8.98 E-value=1.5e+02 Score=24.10 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhHhHHHHhhhcccccccccccc
Q 028862 50 HQSWASAYESCESKVLSQCEHGARIGCSVNASK 82 (202)
Q Consensus 50 ~~SW~~a~~~cE~~i~sQCEaGAr~GCSIsASr 82 (202)
.++|..+|..-=.++..+-++..+.|=-++|+.
T Consensus 58 ~~~w~~~w~~~a~~~~~~a~~~~~~g~~~~a~~ 90 (405)
T 3fnb_A 58 PTDWCKRFNEHADYLEDEVERVKKVGYRDLISH 90 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998888888888888888888865
No 5
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=7.12 E-value=1.1e+02 Score=23.15 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=7.5
Q ss_pred eeeccCCCcc
Q 028862 19 VIKFDKPIPL 28 (202)
Q Consensus 19 ~i~FD~plPL 28 (202)
.|.|+||||-
T Consensus 22 ~I~F~P~LP~ 31 (130)
T 2e1m_B 22 FVKVTPPFSY 31 (130)
T ss_dssp TSEEESCCCH
T ss_pred cCcCCCCCCH
Confidence 3789988873
No 6
>1nbl_A Hellethionin D; gamma thionins helleborus, toxin; NMR {Helleborus purpurascens} SCOP: g.13.1.1
Probab=6.66 E-value=2.2e+02 Score=18.76 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHHHHHHhHhHHHHhhhcccccccccccccCCChh
Q 028862 54 ASAYESCESKVLSQCEHGARIGCSVNASKKCKPPW 88 (202)
Q Consensus 54 ~~a~~~cE~~i~sQCEaGAr~GCSIsASrkCkpPW 88 (202)
|.-|..|-..-.++=.=+.-.||=|....+|.|.|
T Consensus 10 Rn~Yn~Cr~~g~s~~~Ca~~sgCki~sg~~Cp~~y 44 (46)
T 1nbl_A 10 RNCYNACRFTGGSQPTCGILCDCIHVTTTTCPSSH 44 (46)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTCBCCCCSSSSCSSC
T ss_pred hhhHHhhcCCCCCHhHHhhccCcEeCCCCcCcCCC
Confidence 44566666654333333667899999999999876
No 7
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Probab=6.36 E-value=2.3e+02 Score=18.79 Aligned_cols=21 Identities=5% Similarity=0.317 Sum_probs=16.8
Q ss_pred CceeeecChhhHHHHHHHHhH
Q 028862 42 SYLLAFRSHQSWASAYESCES 62 (202)
Q Consensus 42 p~vLAFrd~~SW~~a~~~cE~ 62 (202)
-....|....+|..|-+.|+.
T Consensus 4 ~Cy~~~~~~~~w~~A~~~C~~ 24 (115)
T 2msb_A 4 KFFVTNHERMPFSKVKALCSE 24 (115)
T ss_dssp CEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHh
Confidence 345567888999999999986
No 8
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin, calcium-binding protein; HET: MMA; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1* 1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1* 1kze_1*
Probab=6.34 E-value=2.6e+02 Score=18.51 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.9
Q ss_pred eeeecChhhHHHHHHHHhH
Q 028862 44 LLAFRSHQSWASAYESCES 62 (202)
Q Consensus 44 vLAFrd~~SW~~a~~~cE~ 62 (202)
...|....+|..|-+.|+.
T Consensus 4 Y~~~~~~~~w~~A~~~C~~ 22 (113)
T 1rdl_1 4 FMSSVRRMPLNRAKALCSE 22 (113)
T ss_dssp EEECSSCBCHHHHHHHHHH
T ss_pred EEEeCCccCHHHHHHHHHh
Confidence 4567788999999999986
No 9
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein; HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1lit_A
Probab=6.02 E-value=3.2e+02 Score=18.50 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.6
Q ss_pred eeeecChhhHHHHHHHHhHh
Q 028862 44 LLAFRSHQSWASAYESCESK 63 (202)
Q Consensus 44 vLAFrd~~SW~~a~~~cE~~ 63 (202)
...|....+|..|-+.|+..
T Consensus 26 Y~~~~~~~~w~~A~~~C~~~ 45 (144)
T 1qdd_A 26 YYFNEDRETWVDADLYCQNM 45 (144)
T ss_dssp EEEEEEEECHHHHHHHHHHT
T ss_pred EEEeCCCcCHHHHHHHhhcc
Confidence 55677899999999999874
No 10
>2kyj_A LITX; scorpion toxin, insect toxin, disulfide-directed hairpin, to; NMR {Liocheles australasiae} PDB: 2lds_A
Probab=5.89 E-value=1.3e+02 Score=19.33 Aligned_cols=7 Identities=71% Similarity=1.720 Sum_probs=5.2
Q ss_pred cccCCCh
Q 028862 81 SKKCKPP 87 (202)
Q Consensus 81 SrkCkpP 87 (202)
-+|||||
T Consensus 14 p~kckp~ 20 (36)
T 2kyj_A 14 PRKCKPP 20 (36)
T ss_dssp TCEECTT
T ss_pred ccccCCC
Confidence 4788876
Done!