BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028863
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
           Complexed With Substrate
          Length = 493

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 30  WPPRNLCHQLPKLSALERSVTVDSSTIHVQC----LNSVVFPLGEPGPRNAPLATSPPVK 85
           W       +L +   + R+  ++++  HVQ     +N+V+ PL E   R + LA+ P   
Sbjct: 7   WQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASGPFAG 66

Query: 86  LLTRVEQLKLLSKAE 100
           +   ++ L ++S+ +
Sbjct: 67  VPYLLKDLTVVSQGD 81


>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
          Length = 493

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 30  WPPRNLCHQLPKLSALERSVTVDSSTIHVQC----LNSVVFPLGEPGPRNAPLATSPPVK 85
           W       +L +   + R+  ++++  HVQ     +N+V+ PL E   R + LA+ P   
Sbjct: 7   WQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASGPFAG 66

Query: 86  LLTRVEQLKLLSKAE 100
           +   ++ L ++S+ +
Sbjct: 67  VPYLLKDLTVVSQGD 81


>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
           Angstroms
 pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
           Angstroms
 pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
          Length = 343

 Score = 26.9 bits (58), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 63  SVVFPLGEPGPRNAPLATSPPVKLLTRVEQ 92
           S V PL +P P N P +  PP K  + +EQ
Sbjct: 286 SDVIPLSKPIPGNGPFSFFPPGKSHSDIEQ 315


>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
           Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
           Phosphatase) In Complex With Phosphotyrosine
          Length = 305

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 25  FWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNAPLATSPPV 84
           +WF  WP +    + P L  L R V   +      C   +V      G     +ATS   
Sbjct: 196 YWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICC 255

Query: 85  KLLTRVEQLKLLS-----KAEKAGLLSAAEKF 111
           + L +   + +L      + ++ G++   E++
Sbjct: 256 QQLRQEGVVDILKTTCQLRQDRGGMIQTCEQY 287


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,168,971
Number of Sequences: 62578
Number of extensions: 132865
Number of successful extensions: 286
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 6
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)