Query         028863
Match_columns 202
No_of_seqs    59 out of 61
Neff          2.3 
Searched_HMMs 46136
Date          Fri Mar 29 03:44:48 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028863hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF06549 DUF1118:  Protein of u 100.0 1.8E-46 3.9E-51  296.2  10.2  114   89-202     1-116 (116)
  2 PF06549 DUF1118:  Protein of u  99.6 9.2E-17   2E-21  127.7   1.3   79   80-159     1-80  (116)
  3 COG3413 Predicted DNA binding   63.9     4.1   9E-05   33.5   1.5   50   78-130   156-205 (215)
  4 PRK15418 transcriptional regul  47.2      68  0.0015   28.7   6.4   60  105-167    33-93  (318)
  5 PF01988 VIT1:  VIT family;  In  40.3      63  0.0014   26.9   4.9   91  102-200    83-186 (213)
  6 PF09776 Mitoc_L55:  Mitochondr  40.0      10 0.00022   30.8   0.2   12   49-60     50-61  (116)
  7 cd02433 Nodulin-21_like_2 Nodu  34.1      77  0.0017   27.5   4.6   94   99-200    98-205 (234)
  8 PF13412 HTH_24:  Winged helix-  30.0      65  0.0014   20.4   2.7   25  107-133    23-47  (48)
  9 COG2390 DeoR Transcriptional r  28.7 3.2E+02  0.0069   25.1   7.8   68   96-166    21-89  (321)
 10 PF11685 DUF3281:  Protein of u  28.1      53  0.0012   30.2   2.7   34   36-71    119-165 (268)
 11 smart00550 Zalpha Z-DNA-bindin  25.1      61  0.0013   22.6   2.1   29  104-134    25-53  (68)
 12 PF04156 IncA:  IncA protein;    23.8      75  0.0016   25.3   2.6   46  145-192    11-56  (191)
 13 PF09278 MerR-DNA-bind:  MerR,   22.5      60  0.0013   21.6   1.6   21  100-120     2-22  (65)
 14 PF10007 DUF2250:  Uncharacteri  20.5 1.4E+02   0.003   23.0   3.4   39   94-134    11-52  (92)

No 1  
>PF06549 DUF1118:  Protein of unknown function (DUF1118);  InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function.
Probab=100.00  E-value=1.8e-46  Score=296.23  Aligned_cols=114  Identities=75%  Similarity=1.032  Sum_probs=112.8

Q ss_pred             hHHHhhhhHHHHhhccchHHHHcCCchhhhhhhcchhhhhhhcccccccCCC--ChhhHHHHHHHHHhhccceEEEecCC
Q 028863           89 RVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA--TPGALLTLSLGLLLLGPSCVYLVPED  166 (202)
Q Consensus        89 kvEk~~LLSkaEkaGLLS~aEklGlSLSkiEkLGLLS~AE~lglLSla~~~~--sP~~L~~laL~llvagpaaVylVPDD  166 (202)
                      |+||+|+|||+||+||||+||++|+|||+|||+|||||||++|+||+++|+.  +|++|+++++++++++|++||+||||
T Consensus         1 ~~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgLlSkAE~LGlLs~a~~~~~~~P~~L~slaL~ll~ag~~~v~~vPdd   80 (116)
T PF06549_consen    1 RVEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGLLSKAEELGLLSLAEDPASSSPGALASLALPLLVAGPAAVYLVPDD   80 (116)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhccccchHHhhhhHhccccccCChHHHHHHHHHHHHhhhheEEEecCC
Confidence            6899999999999999999999999999999999999999999999999987  99999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHhhhhhhhhhHHHHhhhhccCC
Q 028863          167 YPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS  202 (202)
Q Consensus       167 s~~~ValQ~vvA~~~vvG~~a~f~gS~~ls~LQ~s~  202 (202)
                      |+|+|++|+|+|++|++|++++|+||+++++|||||
T Consensus        81 s~~~va~Q~vvA~~~~vg~~a~f~gS~~l~~LQ~s~  116 (116)
T PF06549_consen   81 STWLVALQAVVALVCVVGGSAAFAGSSLLSKLQESD  116 (116)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999999999999998


No 2  
>PF06549 DUF1118:  Protein of unknown function (DUF1118);  InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function.
Probab=99.62  E-value=9.2e-17  Score=127.72  Aligned_cols=79  Identities=44%  Similarity=0.499  Sum_probs=66.5

Q ss_pred             CCCchhhhhhHHHhhhhHHHHhhcc-chHHHHcCCchhhhhhhcchhhhhhhcccccccCCCChhhHHHHHHHHHhhccc
Q 028863           80 TSPPVKLLTRVEQLKLLSKAEKAGL-LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPS  158 (202)
Q Consensus        80 ~~~~~kvLskvEk~~LLSkaEkaGL-LS~aEklGlSLSkiEkLGLLS~AE~lglLSla~~~~sP~~L~~laL~llvagpa  158 (202)
                      +.|++|+|+|+||.||||+||++|+ ||++||+|+ |||+|++|+||++|+.+-.++..-.+.--+++.++.+.++..|.
T Consensus         1 ~~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgL-lSkAE~LGlLs~a~~~~~~~P~~L~slaL~ll~ag~~~v~~vPd   79 (116)
T PF06549_consen    1 RVEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGL-LSKAEELGLLSLAEDPASSSPGALASLALPLLVAGPAAVYLVPD   79 (116)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhcc-ccchHHhhhhHhccccccCChHHHHHHHHHHHHhhhheEEEecC
Confidence            3578999999999999999999999 999999999 99999999999999998444443333334678888888888886


Q ss_pred             e
Q 028863          159 C  159 (202)
Q Consensus       159 a  159 (202)
                      -
T Consensus        80 d   80 (116)
T PF06549_consen   80 D   80 (116)
T ss_pred             C
Confidence            4


No 3  
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=63.95  E-value=4.1  Score=33.55  Aligned_cols=50  Identities=20%  Similarity=0.325  Sum_probs=42.9

Q ss_pred             CCCCCchhhhhhHHHhhhhHHHHhhccchHHHHcCCchhhhhhhcchhhhhhh
Q 028863           78 LATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEF  130 (202)
Q Consensus        78 ~~~~~~~kvLskvEk~~LLSkaEkaGLLS~aEklGlSLSkiEkLGLLS~AE~l  130 (202)
                      +|+. ++++|+.+=+.|...--.+.++-..||++|+|-+.+++  -|.+||+-
T Consensus       156 LTdr-Q~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst~~e--hLRrAe~K  205 (215)
T COG3413         156 LTDR-QLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKSTLSE--HLRRAERK  205 (215)
T ss_pred             CCHH-HHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHHHHH--HHHHHHHH
Confidence            4443 47888888888888888888898999999999999999  88999874


No 4  
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=47.20  E-value=68  Score=28.66  Aligned_cols=60  Identities=18%  Similarity=0.281  Sum_probs=39.6

Q ss_pred             chHHHHcCCchhhhhhhcchhhhhhhcccccccCCCChh-hHHHHHHHHHhhccceEEEecCCC
Q 028863          105 LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPG-ALLTLSLGLLLLGPSCVYLVPEDY  167 (202)
Q Consensus       105 LS~aEklGlSLSkiEkLGLLS~AE~lglLSla~~~~sP~-~L~~laL~llvagpaaVylVPDDs  167 (202)
                      --.|+++|+|-+++=+  +|..|.+.|+..---+..... .-+---| -=-.+.--+++||++.
T Consensus        33 ~eIA~~lgiSR~~VsR--lL~~Ar~~GiV~I~I~~~~~~~~~Le~~L-~~~fgLk~~iVvp~~~   93 (318)
T PRK15418         33 SEIGERLGLTRLKVSR--LLEKGRQSGIIRVQINSRFEGCLELENAL-RQHFSLQHIRVLPALA   93 (318)
T ss_pred             HHHHHHhCCCHHHHHH--HHHHHHHcCcEEEEEeCCCccHHHHHHHH-HHHhCCCEEEEEeCCC
Confidence            5679999999999999  999999999876655432211 1111111 1123667778888754


No 5  
>PF01988 VIT1:  VIT family;  InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=40.27  E-value=63  Score=26.89  Aligned_cols=91  Identities=23%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             hccchHHHHcCCchhhhhhh-cchhh---------hhhhcccccccCCCChh---hHHHHHHHHHhhccceEEEecCCCh
Q 028863          102 AGLLSAAEKFGLSLSSIEKL-GLLSK---------AEEFGVLSAATDPATPG---ALLTLSLGLLLLGPSCVYLVPEDYP  168 (202)
Q Consensus       102 aGLLS~aEklGlSLSkiEkL-GLLS~---------AE~lglLSla~~~~sP~---~L~~laL~llvagpaaVylVPDDs~  168 (202)
                      .=+....++.|++-.++|+. ..+++         .|++|+..  ++...|.   ....++..+..+.|...|++.+ + 
T Consensus        83 ~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~~~~m~~ee~g~~~--~~~~~p~~~al~~~~sf~lg~liPllp~~~~~-~-  158 (213)
T PF01988_consen   83 EELVEIYRAKGLSEEDAEEIAEELSKDKDALDFMMREELGLSP--EEEESPWKAALATFLSFILGGLIPLLPYFFLP-S-  158 (213)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHhCchHHHHHHhhhccCCc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-
Confidence            33455666678877777762 12222         45566444  3344554   3344667777778888887665 2 


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhHHHHhhhhcc
Q 028863          169 WEVALQGVVALVSVVGGSAAFAASNLVSNLQK  200 (202)
Q Consensus       169 ~~ValQ~vvA~~~vvG~~a~f~gS~~ls~LQ~  200 (202)
                      ..    ..+...+++...++|.-+.+.+++.+
T Consensus       159 ~~----~a~~~s~~~~~~~L~~~G~~~a~~~~  186 (213)
T PF01988_consen  159 VS----EAFIASIAVTILALFILGYFKARISG  186 (213)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11    33334445555556666655555543


No 6  
>PF09776 Mitoc_L55:  Mitochondrial ribosomal protein L55;  InterPro: IPR018615  Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins. 
Probab=39.99  E-value=10  Score=30.77  Aligned_cols=12  Identities=42%  Similarity=0.570  Sum_probs=10.1

Q ss_pred             eeecCCeeEEee
Q 028863           49 VTVDSSTIHVQC   60 (202)
Q Consensus        49 ~tv~~~t~~~~~   60 (202)
                      |.-||||||||.
T Consensus        50 V~pDGSTI~Iry   61 (116)
T PF09776_consen   50 VRPDGSTINIRY   61 (116)
T ss_pred             EecCCCEEEEec
Confidence            566999999975


No 7  
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=34.14  E-value=77  Score=27.54  Aligned_cols=94  Identities=22%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             HHhhccchHHHHcCCchhhhhhh-cchh----------hhhhhcccccccCCCChh--hH-HHHHHHHHhhccceEEEec
Q 028863           99 AEKAGLLSAAEKFGLSLSSIEKL-GLLS----------KAEEFGVLSAATDPATPG--AL-LTLSLGLLLLGPSCVYLVP  164 (202)
Q Consensus        99 aEkaGLLS~aEklGlSLSkiEkL-GLLS----------~AE~lglLSla~~~~sP~--~L-~~laL~llvagpaaVylVP  164 (202)
                      -|+.-+...-++.|+|.+++++. -.++          ..|++|+..-  +...|-  ++ ..++..+..+.|...|++.
T Consensus        98 ~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~--~~~~P~~aAl~sflsF~ig~liPLLPf~~~  175 (234)
T cd02433          98 EEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPE--LLGNPWSAAVSSFLLFALGALIPVLPFLFG  175 (234)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCcc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56666777778889888887752 1111          1334553321  123444  22 3356666667776666654


Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhHHHHhhhhcc
Q 028863          165 EDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK  200 (202)
Q Consensus       165 DDs~~~ValQ~vvA~~~vvG~~a~f~gS~~ls~LQ~  200 (202)
                      .+...      .+...|++...++|.-+.+.+.+.+
T Consensus       176 ~~~~~------~~~~s~~~~~~~L~~lG~~~a~~s~  205 (234)
T cd02433         176 MSGLA------ALVLSVLLVGLALLATGAVTGLLSG  205 (234)
T ss_pred             cchhH------HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            33211      1122333444445544444444433


No 8  
>PF13412 HTH_24:  Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=29.96  E-value=65  Score=20.35  Aligned_cols=25  Identities=44%  Similarity=0.680  Sum_probs=18.6

Q ss_pred             HHHHcCCchhhhhhhcchhhhhhhccc
Q 028863          107 AAEKFGLSLSSIEKLGLLSKAEEFGVL  133 (202)
Q Consensus       107 ~aEklGlSLSkiEkLGLLS~AE~lglL  133 (202)
                      .+++.|+|.+.+-+  .+...++.|++
T Consensus        23 la~~~~is~~tv~~--~l~~L~~~g~I   47 (48)
T PF13412_consen   23 LAEKLGISRSTVNR--YLKKLEEKGLI   47 (48)
T ss_dssp             HHHHHTS-HHHHHH--HHHHHHHTTSE
T ss_pred             HHHHhCCCHHHHHH--HHHHHHHCcCc
Confidence            57788998888887  77777777754


No 9  
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=28.69  E-value=3.2e+02  Score=25.09  Aligned_cols=68  Identities=28%  Similarity=0.389  Sum_probs=42.8

Q ss_pred             hHHHHhhccchHHHHcCCchhhhhhhcchhhhhhhcccccccCCCChhhHHHHHHH-HHhhccceEEEecCC
Q 028863           96 LSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLG-LLLLGPSCVYLVPED  166 (202)
Q Consensus        96 LSkaEkaGLLS~aEklGlSLSkiEkLGLLS~AE~lglLSla~~~~sP~~L~~laL~-llvagpaaVylVPDD  166 (202)
                      |-..+..+-=..||++|+|-.++-+  +|.+|.+.|++.--.++....-+ -+.-- -=-.+.-=+++||+|
T Consensus        21 lYY~~gltQ~eIA~~LgiSR~~v~r--lL~~Ar~~GiV~I~i~~~~~~~~-~Le~~L~~~fgL~~a~VVp~~   89 (321)
T COG2390          21 LYYVEGLTQSEIAERLGISRATVSR--LLAKAREEGIVKISINSPVEGCL-ELEQQLKERFGLKEAIVVPSD   89 (321)
T ss_pred             HHHhcCCCHHHHHHHhCCCHHHHHH--HHHHHHHCCeEEEEeCCCCcchH-HHHHHHHHhcCCCeEEEEcCC
Confidence            3334444447889999999999999  99999999988766663222222 11111 112345556778854


No 10 
>PF11685 DUF3281:  Protein of unknown function (DUF3281);  InterPro: IPR021699  This family of bacterial proteins has no known function. 
Probab=28.08  E-value=53  Score=30.22  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=23.0

Q ss_pred             cccCcccceeece-eeecCCeeEE------------eeeceeEeeCCCC
Q 028863           36 CHQLPKLSALERS-VTVDSSTIHV------------QCLNSVVFPLGEP   71 (202)
Q Consensus        36 ~~~~~k~~a~~~~-~tv~~~t~~~------------~~~~~~vfp~ge~   71 (202)
                      -.|..+|+  ++| +||||.||..            ...++-|||-|+=
T Consensus       119 ~~Gsn~Is--VSG~vtv~gKtvDLa~~v~pv~idt~~v~~ShVF~tg~L  165 (268)
T PF11685_consen  119 PVGSNTIS--VSGTVTVNGKTVDLATDVPPVVIDTIAVSNSHVFQTGTL  165 (268)
T ss_pred             cCCceEEE--EEEEEEECCEEEEeeccCCceEEeeeeecceeeecCCCC
Confidence            34555665  666 7888887765            3467889997753


No 11 
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=25.08  E-value=61  Score=22.64  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=23.7

Q ss_pred             cchHHHHcCCchhhhhhhcchhhhhhhcccc
Q 028863          104 LLSAAEKFGLSLSSIEKLGLLSKAEEFGVLS  134 (202)
Q Consensus       104 LLS~aEklGlSLSkiEkLGLLS~AE~lglLS  134 (202)
                      .--.++++|++-+.+.+  .|...++.|++.
T Consensus        25 a~eLa~~lgl~~~~v~r--~L~~L~~~G~V~   53 (68)
T smart00550       25 ALQLAKNLGLPKKEVNR--VLYSLEKKGKVC   53 (68)
T ss_pred             HHHHHHHHCCCHHHHHH--HHHHHHHCCCEE
Confidence            35678899999988888  889999988653


No 12 
>PF04156 IncA:  IncA protein;  InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.81  E-value=75  Score=25.34  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             HHHHHHHHHhhccceEEEecCCChhHHHHHHHHHHHHhhhhhhhhhHH
Q 028863          145 LLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAAS  192 (202)
Q Consensus       145 L~~laL~llvagpaaVylVPDDs~~~ValQ~vvA~~~vvG~~a~f~gS  192 (202)
                      .+.+++.+++.|.++.++-+-+-...+.....++.  ++.|..+|+++
T Consensus        11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~--lAlg~vL~~~g   56 (191)
T PF04156_consen   11 LIILGILLIASGIAALVLFISGLGALISFILGIAL--LALGVVLLSLG   56 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            34456666666666644444333333333333332  23344444443


No 13 
>PF09278 MerR-DNA-bind:  MerR, DNA binding;  InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.49  E-value=60  Score=21.56  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=14.8

Q ss_pred             HhhccchHHHHcCCchhhhhh
Q 028863          100 EKAGLLSAAEKFGLSLSSIEK  120 (202)
Q Consensus       100 EkaGLLS~aEklGlSLSkiEk  120 (202)
                      ++.-++-.+..+|+||.+|-+
T Consensus         2 ~rL~~I~~~r~lGfsL~eI~~   22 (65)
T PF09278_consen    2 ERLQFIRRLRELGFSLEEIRE   22 (65)
T ss_dssp             HHHHHHHHHHHTT--HHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHH
Confidence            445567778889999999988


No 14 
>PF10007 DUF2250:  Uncharacterized protein conserved in archaea (DUF2250);  InterPro: IPR019254  Members of this family of hypothetical archaeal proteins have no known function. 
Probab=20.47  E-value=1.4e+02  Score=23.02  Aligned_cols=39  Identities=36%  Similarity=0.557  Sum_probs=28.3

Q ss_pred             hhhHHHHhhcc---chHHHHcCCchhhhhhhcchhhhhhhcccc
Q 028863           94 KLLSKAEKAGL---LSAAEKFGLSLSSIEKLGLLSKAEEFGVLS  134 (202)
Q Consensus        94 ~LLSkaEkaGL---LS~aEklGlSLSkiEkLGLLS~AE~lglLS  134 (202)
                      ++|--..++|-   -+.|...++++..+++  ++-+.|+.|++-
T Consensus        11 ~IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~--~l~~Le~~GLle   52 (92)
T PF10007_consen   11 KILQHLKKAGPDYAKSIARRLKIPLEEVRE--ALEKLEEMGLLE   52 (92)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHCCCHHHHHH--HHHHHHHCCCeE
Confidence            34444455555   5677788999998888  888888888763


Done!