Query 028863
Match_columns 202
No_of_seqs 59 out of 61
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 05:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qgp_A Protein (double strande 32.3 58 0.002 22.2 4.0 43 92-136 16-64 (77)
2 1qbj_A Protein (double-strande 31.0 63 0.0022 22.6 4.1 43 92-136 12-60 (81)
3 1b0n_B Protein (SINI protein); 24.1 34 0.0012 23.5 1.6 27 100-126 14-40 (57)
4 1oyi_A Double-stranded RNA-bin 21.5 65 0.0022 23.3 2.8 29 105-135 34-62 (82)
5 2htj_A P fimbrial regulatory p 21.2 90 0.0031 20.5 3.3 27 106-134 19-45 (81)
6 2jt1_A PEFI protein; solution 20.8 49 0.0017 23.1 2.0 29 106-136 29-57 (77)
7 2heo_A Z-DNA binding protein 1 19.9 52 0.0018 21.6 1.9 27 105-133 29-55 (67)
8 2lkp_A Transcriptional regulat 18.5 1.1E+02 0.0038 20.9 3.4 48 85-134 27-76 (119)
9 2igr_A Anticancer peptide CB1A 17.8 77 0.0026 20.1 2.2 21 84-104 2-23 (34)
10 3qyf_A Crispr-associated prote 15.5 58 0.002 29.0 1.6 22 105-126 229-250 (324)
No 1
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.27 E-value=58 Score=22.21 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=32.3
Q ss_pred HhhhhHHHHhhc----c--chHHHHcCCchhhhhhhcchhhhhhhcccccc
Q 028863 92 QLKLLSKAEKAG----L--LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAA 136 (202)
Q Consensus 92 k~~LLSkaEkaG----L--LS~aEklGlSLSkiEkLGLLS~AE~lglLSla 136 (202)
+.++|.-..+.| + -..|+++|+|-+.+.+ .|.+.|+.|++.-.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~--~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINR--VLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHH--HHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEEec
Confidence 355666656665 3 4578899999999999 79999999977443
No 2
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.97 E-value=63 Score=22.60 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=32.1
Q ss_pred HhhhhHHHHhhc----c--chHHHHcCCchhhhhhhcchhhhhhhcccccc
Q 028863 92 QLKLLSKAEKAG----L--LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAA 136 (202)
Q Consensus 92 k~~LLSkaEkaG----L--LS~aEklGlSLSkiEkLGLLS~AE~lglLSla 136 (202)
+.++|.-..+.| + -..|+++|+|-+.+++ .|.+.|+.|++.-.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~--~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINR--VLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHH--HHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEEec
Confidence 444665555666 3 4578899999999999 79999999977543
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.09 E-value=34 Score=23.48 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=19.1
Q ss_pred HhhccchHHHHcCCchhhhhhhcchhh
Q 028863 100 EKAGLLSAAEKFGLSLSSIEKLGLLSK 126 (202)
Q Consensus 100 EkaGLLS~aEklGlSLSkiEkLGLLS~ 126 (202)
|...|+..|.++|+|+..|++.=-+.+
T Consensus 14 ewl~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 14 EWVELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 455667778889999999999433333
No 4
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.54 E-value=65 Score=23.26 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=24.1
Q ss_pred chHHHHcCCchhhhhhhcchhhhhhhccccc
Q 028863 105 LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSA 135 (202)
Q Consensus 105 LS~aEklGlSLSkiEkLGLLS~AE~lglLSl 135 (202)
-..|+++|+|-+.+-+ .|.+.|+.|++.-
T Consensus 34 ~eLAk~LgiSk~aVr~--~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 34 AQLTRQLNMEKREVNK--ALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHSSSCHHHHHH--HHHHHHHHTSSEE
T ss_pred HHHHHHHCcCHHHHHH--HHHHHHHCCCEEe
Confidence 4568899999999988 8899999997743
No 5
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.17 E-value=90 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=22.2
Q ss_pred hHHHHcCCchhhhhhhcchhhhhhhcccc
Q 028863 106 SAAEKFGLSLSSIEKLGLLSKAEEFGVLS 134 (202)
Q Consensus 106 S~aEklGlSLSkiEkLGLLS~AE~lglLS 134 (202)
..++.+|+|-+.+-+ .|...++.|++.
T Consensus 19 eLa~~lgvs~~tv~r--~L~~L~~~GlI~ 45 (81)
T 2htj_A 19 EIAEALAVTDYQARY--YLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHTSCHHHHHH--HHHHHHHHTSEE
T ss_pred HHHHHHCcCHHHHHH--HHHHHHHCCCEE
Confidence 357889999998888 788888888775
No 6
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.81 E-value=49 Score=23.08 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=23.7
Q ss_pred hHHHHcCCchhhhhhhcchhhhhhhcccccc
Q 028863 106 SAAEKFGLSLSSIEKLGLLSKAEEFGVLSAA 136 (202)
Q Consensus 106 S~aEklGlSLSkiEkLGLLS~AE~lglLSla 136 (202)
..++.+|+|.+.+.+ -|...|+.|+|.-.
T Consensus 29 EIa~~lgvS~~TVrr--~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 29 DIADAAGLSIYQVRL--YLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHTCCHHHHHH--HHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHH--HHHHHHHCCcEEec
Confidence 467899999998888 88999999977543
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=19.87 E-value=52 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=23.2
Q ss_pred chHHHHcCCchhhhhhhcchhhhhhhccc
Q 028863 105 LSAAEKFGLSLSSIEKLGLLSKAEEFGVL 133 (202)
Q Consensus 105 LS~aEklGlSLSkiEkLGLLS~AE~lglL 133 (202)
=..|+++|+|-+.+.+ .+...++.|++
T Consensus 29 ~eLA~~lglsr~tv~~--~l~~L~~~G~I 55 (67)
T 2heo_A 29 FQLVKKCQVPKKTLNQ--VLYRLKKEDRV 55 (67)
T ss_dssp HHHHHHHCSCHHHHHH--HHHHHHHTTSE
T ss_pred HHHHHHHCcCHHHHHH--HHHHHHHCCcE
Confidence 4578899999999999 88999998875
No 8
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=18.49 E-value=1.1e+02 Score=20.93 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=31.8
Q ss_pred hhhhhHHHhhhhHHHHh--hccchHHHHcCCchhhhhhhcchhhhhhhcccc
Q 028863 85 KLLTRVEQLKLLSKAEK--AGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLS 134 (202)
Q Consensus 85 kvLskvEk~~LLSkaEk--aGLLS~aEklGlSLSkiEkLGLLS~AE~lglLS 134 (202)
+.+....+..+|....+ ..+=..++++|+|-+.+-+ .|...|+.|++.
T Consensus 27 ~~l~~~~~~~il~~L~~~~~s~~ela~~l~is~stvsr--~l~~Le~~Glv~ 76 (119)
T 2lkp_A 27 QALATPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSH--QLRVLRNLGLVV 76 (119)
T ss_dssp HHHCCHHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHH--HHHHHHHHCSEE
T ss_pred HHhCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEE
Confidence 34444456666666555 2224467889999888877 778888888664
No 9
>2igr_A Anticancer peptide CB1A; cecropin, antimicrobial peptide, ploycat peptide, cecropin fingerprint sequence, de novo protein; NMR {Hyalophora cecropia}
Probab=17.81 E-value=77 Score=20.12 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=13.9
Q ss_pred hhhhhhHHHh-hhhHHHHhhcc
Q 028863 84 VKLLTRVEQL-KLLSKAEKAGL 104 (202)
Q Consensus 84 ~kvLskvEk~-~LLSkaEkaGL 104 (202)
-++++++|+. ++..+.|++|-
T Consensus 2 wkvfkkiekkwkvfkkiekagp 23 (34)
T 2igr_A 2 WKVFKKIEKKWKVFKKIEKAGP 23 (34)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHHHHHHHHhCc
Confidence 3677777764 56666777664
No 10
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=15.50 E-value=58 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=17.7
Q ss_pred chHHHHcCCchhhhhhhcchhh
Q 028863 105 LSAAEKFGLSLSSIEKLGLLSK 126 (202)
Q Consensus 105 LS~aEklGlSLSkiEkLGLLS~ 126 (202)
-+.||++|++++.+|++|++.-
T Consensus 229 ~~la~~lgi~v~~L~~~gli~~ 250 (324)
T 3qyf_A 229 EKRAEELGIPVRLLEAKMLVER 250 (324)
T ss_dssp HHHHHHTTCCHHHHHHTTSEEE
T ss_pred HHHHHHhCCCHHHHHHCCCeEe
Confidence 3568899999999999998643
Done!