Query 028863
Match_columns 202
No_of_seqs 59 out of 61
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 05:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 34.4 8.1 0.00059 25.9 1.7 26 99-126 3-28 (94)
2 d1z05a1 a.4.5.63 (A:10-80) Tra 34.0 13 0.00097 23.0 2.6 41 92-134 8-51 (71)
3 d3bz7a1 b.34.3.1 (A:34-79) Myo 22.0 25 0.0018 22.0 2.2 34 25-58 2-39 (46)
4 d2hoea1 a.4.5.63 (A:10-71) N-a 19.1 32 0.0023 21.2 2.3 42 86-136 4-45 (62)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 16.7 25 0.0018 22.9 1.4 53 73-131 3-60 (66)
6 d1ofux_ c.37.1.22 (X:) Hypothe 15.4 24 0.0018 24.7 1.1 18 13-30 20-42 (119)
7 d1rp3a1 a.4.13.1 (A:87-163) Si 12.8 28 0.002 21.8 0.7 23 106-130 31-53 (77)
8 d1b9ma1 a.4.5.8 (A:-1-126) N-t 11.5 76 0.0056 20.9 2.8 41 88-130 18-59 (127)
9 d1umqa_ a.4.1.12 (A:) Photosyn 11.2 1.1E+02 0.0083 18.5 3.4 34 86-119 16-51 (60)
10 d2cfxa1 a.4.5.32 (A:1-63) Tran 11.2 1.1E+02 0.0083 18.4 3.4 29 104-134 22-50 (63)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=34.43 E-value=8.1 Score=25.89 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=19.4
Q ss_pred HHhhccchHHHHcCCchhhhhhhcchhh
Q 028863 99 AEKAGLLSAAEKFGLSLSSIEKLGLLSK 126 (202)
Q Consensus 99 aEkaGLLS~aEklGlSLSkiEkLGLLS~ 126 (202)
.++.-++..+.++|+||+.|-+ ||..
T Consensus 3 l~RL~fI~~ar~lGFsL~EI~~--ll~l 28 (94)
T d1q08a_ 3 LQRLKFIRHARQLGFSLESIRE--LLSI 28 (94)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHH--HHHh
Confidence 4556667788888999999988 5544
No 2
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=33.95 E-value=13 Score=23.02 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=28.1
Q ss_pred HhhhhHHHHhhccch---HHHHcCCchhhhhhhcchhhhhhhcccc
Q 028863 92 QLKLLSKAEKAGLLS---AAEKFGLSLSSIEKLGLLSKAEEFGVLS 134 (202)
Q Consensus 92 k~~LLSkaEkaGLLS---~aEklGlSLSkiEkLGLLS~AE~lglLS 134 (202)
+.++|.-..+.|=+| .|+..|+|.+.+-+ .+...++.|++.
T Consensus 8 ~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~--~l~~L~~~Glv~ 51 (71)
T d1z05a1 8 AGRVYKLIDQKGPISRIDLSKESELAPASITK--ITRELIDAHLIH 51 (71)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHH--HHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHH--HHHHHHHCCCEE
Confidence 334444444444433 46789999999988 888888888764
No 3
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=21.96 E-value=25 Score=21.99 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=16.8
Q ss_pred cccCCCCCccccccCc-ccceeece---eeecCCeeEE
Q 028863 25 FWFNPWPPRNLCHQLP-KLSALERS---VTVDSSTIHV 58 (202)
Q Consensus 25 ~~~~p~ppr~~~~~~~-k~~a~~~~---~tv~~~t~~~ 58 (202)
.|+||-|...-.-..- -.+.+..+ +||||..-.+
T Consensus 2 iwynpdpkerdsyecgeivsetsdsftfktvdgqdrqv 39 (46)
T d3bz7a1 2 IWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQV 39 (46)
T ss_dssp EEECSSTTCTTCCEEEEEEEECSSEEEEECCC-CEEEE
T ss_pred cccCCCccccccchhcceeecccCceEEEeccCcccee
Confidence 6999988643222111 12333333 7888865333
No 4
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=19.10 E-value=32 Score=21.23 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=27.8
Q ss_pred hhhhHHHhhhhHHHHhhccchHHHHcCCchhhhhhhcchhhhhhhcccccc
Q 028863 86 LLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAA 136 (202)
Q Consensus 86 vLskvEk~~LLSkaEkaGLLS~aEklGlSLSkiEkLGLLS~AE~lglLSla 136 (202)
+|+.+.+-. +|++| .++..|+|.+.+-+ ++...++.|++--.
T Consensus 4 Il~~i~~~p-isr~e------La~~~gls~~TVs~--~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 4 ILKRIMKSP-VSRVE------LAEELGLTKTTVGE--IAKIFLEKGIVVEE 45 (62)
T ss_dssp SHHHHHHSC-BCHHH------HHHHHTCCHHHHHH--HHHHHHHHTSEEEE
T ss_pred HHHHHHHCC-cCHHH------HHHHHCcCHHHHHH--HHHHHHHCCCEEEC
Confidence 444444322 45554 56788999988888 77888888876433
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.70 E-value=25 Score=22.95 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=26.1
Q ss_pred CCCCCCCCCCchhhhhhHHHhhhhHHHHhhccchHHHHcCCchhhhhh-----hcchhhhhhhc
Q 028863 73 PRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEK-----LGLLSKAEEFG 131 (202)
Q Consensus 73 p~~~~~~~~~~~kvLskvEk~~LLSkaEkaGLLS~aEklGlSLSkiEk-----LGLLS~AE~lg 131 (202)
|+.+.+|-.++++++.++|+-.=+++ -..|.++|+.-|.+-. --+|...|+.|
T Consensus 3 ~kRk~LT~~eK~~ii~~~e~g~k~sq------~eIA~~fGv~~STvs~IlKnK~kil~~~~~~g 60 (66)
T d1hlva1 3 PKRRQLTFREKSRIIQEVEENPDLRK------GEIARRFNIPPSTLSTILKNKRAILASERKYG 60 (66)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH------HHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHG
T ss_pred cccccCCHHHHHHHHHHHHcCCcchH------HHHHHHhCCChhHHHHHHHHHHHHHHHHHHcC
Confidence 33344555555555555554333222 2356777776665533 12444555554
No 6
>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.44 E-value=24 Score=24.68 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=13.8
Q ss_pred hhhchHHhhhc-----ccccCCC
Q 028863 13 LLPLLKETLSH-----LFWFNPW 30 (202)
Q Consensus 13 ~~~~~~~~~~~-----~~~~~p~ 30 (202)
|+|+|++...+ +.|+|||
T Consensus 20 L~P~L~~l~~~~~~rwi~wI~Pp 42 (119)
T d1ofux_ 20 LAPILRELSEEQDARWLTLIAPP 42 (119)
T ss_dssp HHHHHHHHTTCSSSSEEEEESCC
T ss_pred HHHHHHHHHhcCCCcEEEEEcCC
Confidence 57888876643 7999986
No 7
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=12.82 E-value=28 Score=21.82 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=16.7
Q ss_pred hHHHHcCCchhhhhhhcchhhhhhh
Q 028863 106 SAAEKFGLSLSSIEKLGLLSKAEEF 130 (202)
Q Consensus 106 S~aEklGlSLSkiEkLGLLS~AE~l 130 (202)
-.|+.+|+|.+++++ ++..+...
T Consensus 31 EiA~~lg~s~~e~~~--~l~~~~~~ 53 (77)
T d1rp3a1 31 EVAKELGISTEELFK--TLDKINFS 53 (77)
T ss_dssp HHHHHHTSCHHHHHH--HHHHHHHH
T ss_pred HHHHHHCcCHHHHHH--HHHHHhcC
Confidence 468899999999998 55544443
No 8
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=11.49 E-value=76 Score=20.88 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=29.0
Q ss_pred hhHHHhhhhHHHHhhcc-chHHHHcCCchhhhhhhcchhhhhhh
Q 028863 88 TRVEQLKLLSKAEKAGL-LSAAEKFGLSLSSIEKLGLLSKAEEF 130 (202)
Q Consensus 88 skvEk~~LLSkaEkaGL-LS~aEklGlSLSkiEkLGLLS~AE~l 130 (202)
-+.++..++..+.+.|= -.+|+++|+|-+.+-+ .+...|+.
T Consensus 18 ~~~~~l~~~~ai~~~gs~~~AA~~l~~sq~avs~--~i~~lE~~ 59 (127)
T d1b9ma1 18 ADPRRISLLKHIALSGSISQGAKDAGISYKSAWD--AINEMNQL 59 (127)
T ss_dssp ECHHHHHHHHHHHHHSSHHHHHHHHTCCHHHHHH--HHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCChHHHHHHhcCChhHHHH--HHHHHHHH
Confidence 34556667777666666 4457889999998887 66777763
No 9
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.23 E-value=1.1e+02 Score=18.46 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=27.3
Q ss_pred hhhhHHHhhhhHHHHhhcc--chHHHHcCCchhhhh
Q 028863 86 LLTRVEQLKLLSKAEKAGL--LSAAEKFGLSLSSIE 119 (202)
Q Consensus 86 vLskvEk~~LLSkaEkaGL--LS~aEklGlSLSkiE 119 (202)
-|..+|+.-+....++.|- --+|+.+|+|-+.+-
T Consensus 16 ~l~~~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~ 51 (60)
T d1umqa_ 16 SADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQ 51 (60)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHHHHCCCHHHHH
Confidence 4678999988888888886 567888999887654
No 10
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=11.21 E-value=1.1e+02 Score=18.40 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=22.3
Q ss_pred cchHHHHcCCchhhhhhhcchhhhhhhcccc
Q 028863 104 LLSAAEKFGLSLSSIEKLGLLSKAEEFGVLS 134 (202)
Q Consensus 104 LLS~aEklGlSLSkiEkLGLLS~AE~lglLS 134 (202)
.-..|++.|+|-+.+.+ =+.+.|+.|++.
T Consensus 22 ~~~iA~~lgis~~tv~~--Ri~~L~~~giI~ 50 (63)
T d2cfxa1 22 MRELGRKIKLSPPSVTE--RVRQLESFGIIK 50 (63)
T ss_dssp HHHHHHHHTCCHHHHHH--HHHHHHHTTSEE
T ss_pred HHHHHHHHCcCHHHHHH--HHHHHHHCCCee
Confidence 34568899999988887 677888888663
Done!