Query 028867
Match_columns 202
No_of_seqs 190 out of 1335
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 7E-52 1.5E-56 341.3 21.9 193 2-199 1-193 (224)
2 PF12481 DUF3700: Aluminium in 100.0 8.7E-48 1.9E-52 312.5 18.0 198 2-201 1-199 (228)
3 PLN02549 asparagine synthase ( 100.0 1.8E-33 3.9E-38 261.6 18.9 158 32-198 22-183 (578)
4 PTZ00077 asparagine synthetase 100.0 3.2E-33 6.9E-38 260.4 19.5 157 32-198 22-191 (586)
5 PRK09431 asnB asparagine synth 100.0 2.8E-33 6.1E-38 259.4 18.4 158 32-199 22-185 (554)
6 COG0367 AsnB Asparagine syntha 100.0 6.4E-32 1.4E-36 249.8 15.5 159 30-198 19-188 (542)
7 cd00712 AsnB Glutamine amidotr 100.0 3.6E-30 7.9E-35 213.2 19.6 158 31-198 19-209 (220)
8 TIGR01536 asn_synth_AEB aspara 100.0 8.2E-30 1.8E-34 232.1 18.5 157 32-198 19-210 (467)
9 PF13537 GATase_7: Glutamine a 100.0 3E-30 6.5E-35 196.5 10.4 117 58-179 3-124 (125)
10 TIGR03104 trio_amidotrans aspa 100.0 2E-29 4.4E-34 235.5 18.1 158 32-198 21-212 (589)
11 PRK07631 amidophosphoribosyltr 100.0 2.1E-29 4.5E-34 229.1 17.5 141 55-198 80-228 (475)
12 KOG0571 Asparagine synthase (g 100.0 3.6E-30 7.8E-35 226.3 11.3 157 33-200 22-185 (543)
13 cd01909 betaLS_CarA_N Glutamin 100.0 5.8E-29 1.3E-33 203.4 15.3 112 76-197 49-181 (199)
14 PRK08525 amidophosphoribosyltr 100.0 7.9E-29 1.7E-33 224.5 17.6 142 55-198 70-219 (445)
15 PRK07272 amidophosphoribosyltr 100.0 9.8E-29 2.1E-33 225.2 17.9 142 55-198 81-230 (484)
16 PRK07349 amidophosphoribosyltr 100.0 2.8E-28 6.1E-33 222.8 18.9 142 55-198 103-257 (500)
17 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 6.5E-29 1.4E-33 200.7 13.1 151 32-194 22-180 (181)
18 PRK06388 amidophosphoribosyltr 100.0 2.7E-28 5.9E-33 221.9 18.0 141 55-198 87-236 (474)
19 TIGR03108 eps_aminotran_1 exos 100.0 2.4E-28 5.2E-33 229.7 17.9 158 32-198 22-212 (628)
20 PRK06781 amidophosphoribosyltr 100.0 6.5E-28 1.4E-32 219.4 18.5 141 55-198 80-228 (471)
21 PRK08341 amidophosphoribosyltr 100.0 1.2E-27 2.5E-32 216.3 19.8 158 31-198 49-217 (442)
22 cd00714 GFAT Glutamine amidotr 100.0 1.9E-27 4.1E-32 196.8 19.2 137 55-196 69-214 (215)
23 PLN02440 amidophosphoribosyltr 100.0 8E-28 1.7E-32 219.6 18.0 142 55-198 70-219 (479)
24 PRK09123 amidophosphoribosyltr 100.0 1.5E-27 3.2E-32 217.6 17.7 141 55-198 91-239 (479)
25 PRK07847 amidophosphoribosyltr 100.0 1.5E-27 3.2E-32 218.5 17.8 141 55-198 93-248 (510)
26 PRK05793 amidophosphoribosyltr 100.0 1.6E-27 3.4E-32 217.2 16.7 141 55-198 85-233 (469)
27 PRK09246 amidophosphoribosyltr 100.0 1.8E-27 3.9E-32 218.4 16.8 143 55-198 70-232 (501)
28 cd01907 GlxB Glutamine amidotr 99.9 1.6E-26 3.5E-31 195.2 17.2 137 55-196 82-248 (249)
29 TIGR01134 purF amidophosphorib 99.9 3.7E-26 8E-31 207.0 18.9 142 55-199 70-220 (442)
30 cd00352 Gn_AT_II Glutamine ami 99.9 5.9E-26 1.3E-30 185.9 17.7 141 55-195 73-220 (220)
31 cd00715 GPATase_N Glutamine am 99.9 1.6E-25 3.5E-30 189.2 18.8 142 55-198 69-219 (252)
32 PRK00331 glucosamine--fructose 99.9 1.4E-25 2.9E-30 210.2 19.7 139 55-198 70-217 (604)
33 COG0034 PurF Glutamine phospho 99.9 4.9E-26 1.1E-30 202.3 15.0 166 28-196 50-224 (470)
34 TIGR01135 glmS glucosamine--fr 99.9 2.2E-25 4.7E-30 208.9 18.1 139 55-198 69-216 (607)
35 PF13522 GATase_6: Glutamine a 99.9 2.3E-24 5E-29 166.0 14.0 112 55-174 17-133 (133)
36 PTZ00295 glucosamine-fructose- 99.9 2.7E-24 5.9E-29 202.8 17.2 139 55-198 100-247 (640)
37 KOG0572 Glutamine phosphoribos 99.9 3.1E-24 6.6E-29 186.6 14.1 166 29-198 49-233 (474)
38 PTZ00394 glucosamine-fructose- 99.9 2.7E-22 5.9E-27 189.8 16.2 142 55-200 102-274 (670)
39 PLN02981 glucosamine:fructose- 99.9 5.8E-22 1.3E-26 188.0 16.3 141 55-199 91-270 (680)
40 cd00713 GltS Glutamine amidotr 99.8 1.6E-18 3.5E-23 154.9 16.6 160 28-198 181-393 (413)
41 COG0449 GlmS Glucosamine 6-pho 99.8 6.3E-19 1.4E-23 162.7 12.9 138 55-199 71-215 (597)
42 cd01908 YafJ Glutamine amidotr 99.7 5.2E-17 1.1E-21 137.7 13.3 137 55-200 85-257 (257)
43 TIGR03442 conserved hypothetic 99.7 1.9E-16 4.2E-21 134.0 14.0 134 55-200 87-244 (251)
44 PF00310 GATase_2: Glutamine a 99.7 9.9E-16 2.2E-20 135.6 14.5 138 28-175 175-361 (361)
45 KOG0573 Asparagine synthase [A 99.5 6.3E-13 1.4E-17 118.4 12.6 144 31-192 20-171 (520)
46 PRK11750 gltB glutamate syntha 99.4 2E-12 4.3E-17 129.0 14.5 158 29-198 193-403 (1485)
47 KOG1268 Glucosamine 6-phosphat 99.3 2.1E-11 4.4E-16 110.6 10.2 106 55-163 84-202 (670)
48 PF13230 GATase_4: Glutamine a 98.6 3.8E-07 8.3E-12 78.2 10.8 135 55-200 76-251 (271)
49 COG0067 GltB Glutamate synthas 98.3 1.9E-06 4.2E-11 76.4 8.0 155 28-198 182-359 (371)
50 PF09147 DUF1933: Domain of un 97.9 0.00014 3E-09 58.3 10.2 92 77-178 47-142 (201)
51 COG0121 Predicted glutamine am 96.3 0.049 1.1E-06 46.4 10.2 43 67-110 88-133 (252)
52 KOG0399 Glutamate synthase [Am 94.1 0.53 1.1E-05 48.0 10.6 70 127-198 406-477 (2142)
53 COG0067 GltB Glutamate synthas 82.2 2.7 5.8E-05 37.8 5.1 49 126-176 322-370 (371)
54 PF04566 RNA_pol_Rpb2_4: RNA p 79.2 5.1 0.00011 26.7 4.5 46 105-161 13-60 (63)
55 PF08973 TM1506: Domain of unk 48.7 7.4 0.00016 30.0 0.6 26 132-160 10-35 (134)
56 COG4256 HemP Hemin uptake prot 34.5 20 0.00044 23.7 0.9 23 68-90 29-51 (63)
57 TIGR03823 FliZ flagellar regul 33.0 31 0.00068 27.3 1.9 19 77-95 33-51 (168)
58 PRK11582 flagella biosynthesis 32.6 33 0.00071 27.3 1.9 18 77-94 33-50 (169)
59 KOG0876 Manganese superoxide d 30.4 3E+02 0.0066 23.2 7.4 82 80-163 92-182 (234)
60 PF12594 DUF3764: Protein of u 26.6 31 0.00066 24.6 0.8 19 149-167 28-46 (86)
61 COG4315 Uncharacterized protei 23.1 89 0.0019 23.8 2.7 32 128-164 86-117 (138)
62 PF06339 Ectoine_synth: Ectoin 20.6 1.1E+02 0.0023 23.4 2.8 14 185-198 75-88 (126)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=7e-52 Score=341.31 Aligned_cols=193 Identities=58% Similarity=0.922 Sum_probs=177.7
Q ss_pred ceeccccccCCCccccCCCCCcCCCCCCCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCCCCCCceeecCCcEEE
Q 028867 2 LAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYC 81 (202)
Q Consensus 2 l~~f~~~~a~~p~~l~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~QP~~~~~~~~~l 81 (202)
||||+|+||+|||||++|.+.+. ++.+++|++.|.+..| +.+++.+|+.+.|||++..++ ...|.+++.+++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~---~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~ 75 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP---AKTAEELLKRFLSANP-SAVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC 75 (224)
T ss_pred CcccccccCCCChHHcCCCcccc---CCCHHHHHHHHHhcCC-CcEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence 89999999999999999986543 6678899999999999 899999999999999988765 568888888899999
Q ss_pred EEEeEEccHHHHHHHcCCCCCCCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEE
Q 028867 82 LFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYW 161 (202)
Q Consensus 82 v~nG~I~N~~eL~~~lg~~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyy 161 (202)
++||+|||+.+|+++|+..++.+|+|+|+++|++|+++|++++.+++++|+|+|||||||..++++++|||++|++||||
T Consensus 76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYy 155 (224)
T cd01910 76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYW 155 (224)
T ss_pred EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEE
Confidence 99999999999999998878899999999999998778977777899999999999999999999999999999999999
Q ss_pred EEECCceEEEEechhhHhhhcccceEEeCCCcEEEccc
Q 028867 162 GIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSH 199 (202)
Q Consensus 162 g~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~~ 199 (202)
+.+.+|.++||||+++|...|++.+++|||||||+++.
T Consensus 156 g~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~g 193 (224)
T cd01910 156 GIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEG 193 (224)
T ss_pred EEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCC
Confidence 98878899999999999999977899999999999843
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=8.7e-48 Score=312.51 Aligned_cols=198 Identities=68% Similarity=1.109 Sum_probs=188.3
Q ss_pred ceeccccccCCCccccCCCCC-cCCCCCCCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCCCCCCceeecCCcEE
Q 028867 2 LAIFHKAFANPPEELHSPASQ-KCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIY 80 (202)
Q Consensus 2 l~~f~~~~a~~p~~l~~~~~~-~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~QP~~~~~~~~~ 80 (202)
||||+|+||+|||||++|.+. .+++++++++++++.|.+..| +++++++|+++.|||++..++ ...|.++..-++|.
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p-~a~s~~~g~~~~lAys~~~~~-~l~pR~F~~~DdIf 78 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANP-NAFSMNFGDSAALAYSHSNQS-SLHPRLFAGVDDIF 78 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCC-CeEEEEcCCCEEEEEecCCCC-ccccccccccCCEE
Confidence 899999999999999999965 455679999999999999999 999999999999999999876 56778888778999
Q ss_pred EEEEeEEccHHHHHHHcCCCCCCCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEE
Q 028867 81 CLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLY 160 (202)
Q Consensus 81 lv~nG~I~N~~eL~~~lg~~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLy 160 (202)
|+|-|.|.|...|+++||+.++.+++.+++++|++++++||+++.++++.|+|.|||||||..++++|+|||+.|..|||
T Consensus 79 CiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLy 158 (228)
T PF12481_consen 79 CIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLY 158 (228)
T ss_pred EEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCceEEEEechhhHhhhcccceEEeCCCcEEEccccC
Q 028867 161 WGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYW 201 (202)
Q Consensus 161 yg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~~~~ 201 (202)
||.+.||.++||++...|...|++.+.+||+||+|+++.++
T Consensus 159 WGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl 199 (228)
T PF12481_consen 159 WGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGL 199 (228)
T ss_pred EEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCce
Confidence 99999999999999999999999999999999999998764
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.8e-33 Score=261.55 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=135.3
Q ss_pred chHHHHhccCCCCCcccccccceeEEEEeCCC--CCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC--CCCCCCHHH
Q 028867 32 EDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPH--SPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG--LSKGTDEAM 107 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~--~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg--~~~~~~D~e 107 (202)
..|.+.+.||+| |...++..+...+++.+.. ....+.||+++.+++++++|||||||+.+|+++|. .+.+.||+|
T Consensus 22 ~~m~~~l~hRGP-D~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~E 100 (578)
T PLN02549 22 LELSRRLRHRGP-DWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCE 100 (578)
T ss_pred HHHHHHhcCcCC-CccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHH
Confidence 367788999999 7766655444455555432 11257999998888999999999999999999995 389999999
Q ss_pred HHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceE
Q 028867 108 FVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFA 187 (202)
Q Consensus 108 ~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~ 187 (202)
+|+++|++ +| .+++++|+|+|||||||..+++++++|||+|+|||||+...++.++||||+++|...|. .+.
T Consensus 101 vil~ly~~---~G----~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~~-~I~ 172 (578)
T PLN02549 101 VIAHLYEE---HG----EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCE-RFE 172 (578)
T ss_pred HHHHHHHH---HH----HHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHhC-CEE
Confidence 99999996 46 68999999999999999999999999999999999999876778999999999998886 699
Q ss_pred EeCCCcEEEcc
Q 028867 188 PFPQGKLNFFS 198 (202)
Q Consensus 188 ~~ppG~~~~~~ 198 (202)
+|||||++..+
T Consensus 173 ~lpPGh~l~~~ 183 (578)
T PLN02549 173 EFPPGHYYSSK 183 (578)
T ss_pred EeCCCeEEEEc
Confidence 99999999874
No 4
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=260.37 Aligned_cols=157 Identities=23% Similarity=0.312 Sum_probs=134.1
Q ss_pred chHHHHhccCCCCCccccccc-----ceeEEEEeCCC---CCCCCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-
Q 028867 32 EDTLSDFLSRHSDNTFSMNFG-----HAAVLAYVPPH---SPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL- 99 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~~g-----~~~~l~~~~~~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~- 99 (202)
..|.+.+.||+| |...++.. +...+++.+.. .. .+.||+.+.+++++++|||||||+.+|+++| |.
T Consensus 22 ~~m~~~l~HRGP-D~~g~~~~~~~~~~~~~lgh~RLsIvd~~-~g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~ 99 (586)
T PTZ00077 22 LELSKRLRHRGP-DWSGIIVLENSPGTYNILAHERLAIVDLS-DGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYK 99 (586)
T ss_pred HHHHHHHhCCCC-CcCCEEEeccCCCCcEEEEeccceecCCC-CCCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCc
Confidence 346788999999 77666542 23455555442 22 5799999888899999999999999999998 34
Q ss_pred CCCCCHHHHHHHHHHHhHhcCCchHH-HHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhH
Q 028867 100 SKGTDEAMFVIEAYRTLRDRGPYPAD-QVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVI 178 (202)
Q Consensus 100 ~~~~~D~e~i~~~y~~~~~~G~~~~~-~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL 178 (202)
|.+.||+|+|+++|++ +| . +++++|+|+|||+|||..+++++++|||+|+|||||+...+|.++||||+++|
T Consensus 100 f~t~sD~Evil~ly~~---~G----~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL 172 (586)
T PTZ00077 100 FSSNSDCEIIGHLYKE---YG----PKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKAL 172 (586)
T ss_pred CCCCCHHHHHHHHHHH---hC----HHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHH
Confidence 8999999999999996 57 5 89999999999999999999999999999999999998656789999999999
Q ss_pred hhhcccceEEeCCCcEEEcc
Q 028867 179 KEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 179 ~~~~~~~~~~~ppG~~~~~~ 198 (202)
...|. .+..|||||++..+
T Consensus 173 ~~~~~-~I~~lpPGh~l~~~ 191 (586)
T PTZ00077 173 HDQCV-EVKQFPPGHYYDQT 191 (586)
T ss_pred HHhcC-CEEEeCCCcEEEec
Confidence 98886 69999999999765
No 5
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=2.8e-33 Score=259.44 Aligned_cols=158 Identities=19% Similarity=0.316 Sum_probs=136.1
Q ss_pred chHHHHhccCCCCCcccccccceeEEEEeCCC---CCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---CCCCCCH
Q 028867 32 EDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPH---SPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---LSKGTDE 105 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~~~~~~D 105 (202)
..|.+.+.||+| |...++..+...+++.+.. .. .+.||+++.++.+++++||||||+.+|+++|. .+.+.||
T Consensus 22 ~~m~~~l~hRGP-D~~g~~~~~~~~lgh~RLsIid~~-~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD 99 (554)
T PRK09431 22 LEMSRLMRHRGP-DWSGIYASDNAILGHERLSIVDVN-GGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSD 99 (554)
T ss_pred HHHHHHhhCCCC-CcCCEEEeCCeEEEEEEeeecCCC-CCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCH
Confidence 468889999999 7777665444455555442 22 57999988889999999999999999999984 2789999
Q ss_pred HHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccc
Q 028867 106 AMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKS 185 (202)
Q Consensus 106 ~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~ 185 (202)
+|+|+++|++ +| .+++++|+|+|||||||..++++++||||+|+|||||+...++.++||||+++|...|. .
T Consensus 100 ~Evil~ly~~---~G----~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~~-~ 171 (554)
T PRK09431 100 CEVILALYQE---KG----PDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCK-T 171 (554)
T ss_pred HHHHHHHHHH---HH----HHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhcC-C
Confidence 9999999996 46 68999999999999999999999999999999999999985578999999999998886 6
Q ss_pred eEEeCCCcEEEccc
Q 028867 186 FAPFPQGKLNFFSH 199 (202)
Q Consensus 186 ~~~~ppG~~~~~~~ 199 (202)
+..|||||++..++
T Consensus 172 I~~lpPGh~l~~~~ 185 (554)
T PRK09431 172 IKEFPPGHYYWSKD 185 (554)
T ss_pred EEEECCCeEEEECC
Confidence 99999999997554
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.98 E-value=6.4e-32 Score=249.76 Aligned_cols=159 Identities=16% Similarity=0.257 Sum_probs=135.7
Q ss_pred CcchHHHHhccCCCCCcccccccceeEEEEeCCCCC--CCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---C-CCCC
Q 028867 30 LPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSP--LTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---L-SKGT 103 (202)
Q Consensus 30 ~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~--~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~-~~~~ 103 (202)
....|.+.+.||+| +...++......+++.+.... ..+.||+...+++++++|||||||+.+||+.|. . |.+.
T Consensus 19 ~~~~m~~~l~hRGP-D~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~ 97 (542)
T COG0367 19 IIEEMTKLLRHRGP-DDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTY 97 (542)
T ss_pred HHHHHHHHhhccCC-CccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceeccc
Confidence 45678999999999 877776644444555444211 146899988667799999999999999999994 3 8999
Q ss_pred CHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhh--
Q 028867 104 DEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEG-- 181 (202)
Q Consensus 104 ~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~-- 181 (202)
+|+|+|+++|++ +| .+++++|+|+|||++||..+++||++|||+|+|||||+... +.++||||.|+|...
T Consensus 98 sDtEvil~~y~~---~g----~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~~-~~l~faSE~Kal~~~~~ 169 (542)
T COG0367 98 SDTEVILTLYEE---WG----EDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSKN-ENLAFASEIKALLAHPV 169 (542)
T ss_pred cchHHHHHHHHH---HH----HHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEecC-CceEEEechhhhhhCCc
Confidence 999999999996 45 68999999999999999999999999999999999999984 469999999999988
Q ss_pred ---cccceEEeCCCcEEEcc
Q 028867 182 ---CAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 182 ---~~~~~~~~ppG~~~~~~ 198 (202)
+. .+.++||||++..+
T Consensus 170 ~~~~~-~i~~l~pg~~l~~~ 188 (542)
T COG0367 170 VRFLR-DIKELPPGHLLEFT 188 (542)
T ss_pred ccccC-CeEEcCCCcEEEEc
Confidence 76 59999999999876
No 7
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.97 E-value=3.6e-30 Score=213.23 Aligned_cols=158 Identities=16% Similarity=0.263 Sum_probs=131.6
Q ss_pred cchHHHHhccCCCCCccccccccee---EEEEeCCCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---C-CCCC
Q 028867 31 PEDTLSDFLSRHSDNTFSMNFGHAA---VLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---L-SKGT 103 (202)
Q Consensus 31 ~~~l~~~f~~~~~~~~~~~~~g~~~---~l~~~~~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~-~~~~ 103 (202)
-..|+..+.+|+| +...++..+.. +.+++..+.. .+.||+...+++++++|||+|||+.+|++.|+ . +.+.
T Consensus 19 ~~~~~~~l~hRGp-d~~~~~~~~~~~lgh~rl~~~~~~-~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~ 96 (220)
T cd00712 19 LERMLDALAHRGP-DGSGIWIDEGVALGHRRLSIIDLS-GGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTH 96 (220)
T ss_pred HHHHHHHHhccCC-CCCCEEEECCEEEEEEeeeecCcc-cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCC
Confidence 3568888899999 77666554333 3334433333 57999988888999999999999999999984 2 6899
Q ss_pred CHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcc
Q 028867 104 DEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCA 183 (202)
Q Consensus 104 ~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~ 183 (202)
+|+|+|+++|++ +| .+++++|+|+|||++||..+++++++||++|.|||||+.. ++.++||||.++|...+.
T Consensus 97 sD~e~l~~~~~~---~g----~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~~~ 168 (220)
T cd00712 97 SDTEVILHLYEE---WG----EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLALPG 168 (220)
T ss_pred ChHHHHHHHHHH---Hh----HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhcCC
Confidence 999999999996 56 6999999999999999999999999999999999999998 467999999999976443
Q ss_pred --------------------------cceEEeCCCcEEEcc
Q 028867 184 --------------------------KSFAPFPQGKLNFFS 198 (202)
Q Consensus 184 --------------------------~~~~~~ppG~~~~~~ 198 (202)
+.|..|||||++..+
T Consensus 169 ~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~ 209 (220)
T cd00712 169 VPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVD 209 (220)
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEE
Confidence 359999999998765
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.97 E-value=8.2e-30 Score=232.12 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=129.4
Q ss_pred chHHHHhccCCCCCccccc-ccceeEEEEeCC---CCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCC
Q 028867 32 EDTLSDFLSRHSDNTFSMN-FGHAAVLAYVPP---HSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGT 103 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~-~g~~~~l~~~~~---~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~ 103 (202)
..|.+.+.||+| +...++ ..+...+++.+. +.. .+.||+.+.+++++++|||+|||+.+|+++| |. +.+.
T Consensus 19 ~~m~~~l~hRGP-D~~g~~~~~~~~~lgh~rl~i~d~~-~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~ 96 (467)
T TIGR01536 19 LRMSDTIAHRGP-DASGIEYKDGNAILGHRRLAIIDLS-GGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTD 96 (467)
T ss_pred HHHHHHhhCcCC-CcCCcEEccCCEEEEEEEeEEeCCC-CCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCC
Confidence 457888899999 776665 433333443332 222 4589999888899999999999999999998 33 7899
Q ss_pred CHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhc-
Q 028867 104 DEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGC- 182 (202)
Q Consensus 104 ~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~- 182 (202)
+|+|+|+++|++| | .+++++|+|+|||+|||..+++++++||++|+|||||+.. ++.++||||+++|...+
T Consensus 97 ~D~e~il~~y~~~---g----~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~ 168 (467)
T TIGR01536 97 SDTEVILHLYEEW---G----EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPR 168 (467)
T ss_pred CHHHHHHHHHHHH---H----HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccc
Confidence 9999999999964 6 6899999999999999999999999999999999999988 66899999999986543
Q ss_pred --------------------------ccceEEeCCCcEEEcc
Q 028867 183 --------------------------AKSFAPFPQGKLNFFS 198 (202)
Q Consensus 183 --------------------------~~~~~~~ppG~~~~~~ 198 (202)
.+.|..+||||+...+
T Consensus 169 ~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~ 210 (467)
T TIGR01536 169 NIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLE 210 (467)
T ss_pred cCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEe
Confidence 1347889999998654
No 9
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.97 E-value=3e-30 Score=196.51 Aligned_cols=117 Identities=21% Similarity=0.386 Sum_probs=73.7
Q ss_pred EEeCCCCCCCCCCcee-ecCCcEEEEEEeEEccHHHHHHHcC----CCCCCCHHHHHHHHHHHhHhcCCchHHHHhhhcc
Q 028867 58 AYVPPHSPLTKDRRLF-CGFEDIYCLFMGSLNNLCSLIRQYG----LSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLD 132 (202)
Q Consensus 58 ~~~~~~~~~~~~QP~~-~~~~~~~lv~nG~I~N~~eL~~~lg----~~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~ 132 (202)
++++.... .+.||+. +.+++++++|||+|||+++|+++|. .+.+.+|+|+++++|+++.++| .+++++|+
T Consensus 3 rl~~~~~~-~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~ 77 (125)
T PF13537_consen 3 RLSTDDSD-EGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLD 77 (125)
T ss_dssp -----------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--
T ss_pred cccccccc-ccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 44443333 6799998 5778899999999999999999994 2688999999999998643456 79999999
Q ss_pred CcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHh
Q 028867 133 GSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIK 179 (202)
Q Consensus 133 G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~ 179 (202)
|.||||+||+.+++++++|||+|+|||||+..+++.++||||+++|.
T Consensus 78 G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~ 124 (125)
T PF13537_consen 78 GPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALL 124 (125)
T ss_dssp EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHH
T ss_pred ceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhc
Confidence 99999999999999999999999999999998535899999999986
No 10
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.97 E-value=2e-29 Score=235.48 Aligned_cols=158 Identities=16% Similarity=0.237 Sum_probs=129.1
Q ss_pred chHHHHhccCCCCCcccccccceeEEEEeCC---CCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCC
Q 028867 32 EDTLSDFLSRHSDNTFSMNFGHAAVLAYVPP---HSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTD 104 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~---~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~ 104 (202)
..|.+.+.||+| +...++..+...+++.+. +....+.||+.+.+++++++|||+|||+.+|+++| |. +.+.+
T Consensus 21 ~~m~~~l~hRGP-D~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~s 99 (589)
T TIGR03104 21 VRMLAVLAPRGP-DAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDG 99 (589)
T ss_pred HHHHHhhcCCCC-CcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCC
Confidence 467888899999 766665544344444332 22115799998888889999999999999999998 44 88999
Q ss_pred HHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhc--
Q 028867 105 EAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGC-- 182 (202)
Q Consensus 105 D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~-- 182 (202)
|+|+|+++|++ +| .+++++|+|+|||+|||..+++++++|||+|+|||||... ++.++||||+++|....
T Consensus 100 D~Evil~~y~~---~G----~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~ 171 (589)
T TIGR03104 100 DTEVILKAYHA---WG----RDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAAGGV 171 (589)
T ss_pred HHHHHHHHHHH---HH----HHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhCCCC
Confidence 99999999996 46 6999999999999999999999999999999999999987 56899999999986321
Q ss_pred -------------------------ccceEEeCCCcEEEcc
Q 028867 183 -------------------------AKSFAPFPQGKLNFFS 198 (202)
Q Consensus 183 -------------------------~~~~~~~ppG~~~~~~ 198 (202)
.+.|..+||||++..+
T Consensus 172 ~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~ 212 (589)
T TIGR03104 172 DTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVE 212 (589)
T ss_pred CCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEE
Confidence 1247789999998653
No 11
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=2.1e-29 Score=229.13 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=119.1
Q ss_pred eEEEEeCCCCCC-CCCCceee--cCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCC-chHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC--GFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGP-YPADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~-~~~~~ 126 (202)
||.+|++.+.+. .++||++. .+++++++|||+|+|+++||++| |. |.+.+|+|+|+++|.++..... +.+.+
T Consensus 80 GH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~ 159 (475)
T PRK07631 80 GHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKN 159 (475)
T ss_pred EEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 678888877543 68999963 45789999999999999999998 44 8999999999999987531111 12368
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||+++|. ++++++|||+|+||||||.. ++.++||||.+||...+.+.+++|+|||++..+
T Consensus 160 ~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~ 228 (475)
T PRK07631 160 ALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIIN 228 (475)
T ss_pred HHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEE
Confidence 9999999999999986 68999999999999999998 457999999999988887789999999999765
No 12
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.96 E-value=3.6e-30 Score=226.29 Aligned_cols=157 Identities=22% Similarity=0.339 Sum_probs=132.8
Q ss_pred hHHHHhccCCCCCcccccccce-----eEEEEeCCCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC-C-CCCCCH
Q 028867 33 DTLSDFLSRHSDNTFSMNFGHA-----AVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG-L-SKGTDE 105 (202)
Q Consensus 33 ~l~~~f~~~~~~~~~~~~~g~~-----~~l~~~~~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg-~-~~~~~D 105 (202)
++...+++++| +.....+-.. -++|.... .+++||+++.++.+++.+||||||+.+||+.+. . +++.+|
T Consensus 22 ~ls~~~~hRgp-d~sg~~~~~~~~l~heRLAIvdp---~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sD 97 (543)
T KOG0571|consen 22 ELSRRIRHRGP-DWSGLAQRNDNILGHERLAIVDP---TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSD 97 (543)
T ss_pred hHHHhhcCCCC-CcchhheeccccccccceeEecC---CcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCC
Confidence 35667788888 4333222111 34555444 257999999999999999999999999999985 4 889999
Q ss_pred HHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccc
Q 028867 106 AMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKS 185 (202)
Q Consensus 106 ~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~ 185 (202)
+|+|+++|.+ .|. .++.+.|+|.|||+++|...++++++|||+|++|||||.+.+|.++||||.+.|...|. .
T Consensus 98 cEvIi~lY~k---hg~---~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~-~ 170 (543)
T KOG0571|consen 98 CEVIIHLYEK---HGG---EQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCE-K 170 (543)
T ss_pred ceeeeehHhh---cCc---hhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhh-c
Confidence 9999999996 443 79999999999999999999999999999999999999998999999999999999997 5
Q ss_pred eEEeCCCcEEEcccc
Q 028867 186 FAPFPQGKLNFFSHY 200 (202)
Q Consensus 186 ~~~~ppG~~~~~~~~ 200 (202)
++.|||||+|+++.+
T Consensus 171 i~~fpPgh~y~~~~~ 185 (543)
T KOG0571|consen 171 IESFPPGHYYTSKTG 185 (543)
T ss_pred eeecCCcceeecccc
Confidence 999999999998765
No 13
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.96 E-value=5.8e-29 Score=203.36 Aligned_cols=112 Identities=22% Similarity=0.298 Sum_probs=98.5
Q ss_pred CCcEEEEEEeEEccHHHHHHHcC---C-CCCCCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEE
Q 028867 76 FEDIYCLFMGSLNNLCSLIRQYG---L-SKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTAL 151 (202)
Q Consensus 76 ~~~~~lv~nG~I~N~~eL~~~lg---~-~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aR 151 (202)
.+++++++||||||+.+|+++|+ . +.+.+|+|+|+++|++ +| .+++++|+|+|||+|||++ ++|+++|
T Consensus 49 ~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~---~G----~~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 49 SETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LG----LHAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH---Hh----HHHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 35799999999999999999983 3 7899999999999996 57 6999999999999999999 9999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHhhhc-----------------ccceEEeCCCcEEEc
Q 028867 152 GSDGGVKLYWGIAADGSVVISDDLEVIKEGC-----------------AKSFAPFPQGKLNFF 197 (202)
Q Consensus 152 D~~G~rPLyyg~~~dg~~~faSe~~aL~~~~-----------------~~~~~~~ppG~~~~~ 197 (202)
||+|+|||||... +.++||||+++|.... .+.+..+||||+...
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~ 181 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVL 181 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEE
Confidence 9999999999876 5799999999995321 134899999999853
No 14
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=7.9e-29 Score=224.50 Aligned_cols=142 Identities=14% Similarity=0.188 Sum_probs=117.9
Q ss_pred eEEEEeCCCCCC-CCCCceee--cCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc-hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC--GFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY-PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~-~~~~ 126 (202)
||.+|++.+.+. .++||+.+ .+++++++|||+|||+.+||++| |. |.+.+|+|+|+++|..+.+.... .+.+
T Consensus 70 GH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~ 149 (445)
T PRK08525 70 GHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIE 149 (445)
T ss_pred eecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 566676665433 67999987 56889999999999999999998 44 89999999999999864311111 1368
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||+++|. ++|+++||++|+|||||+..+++.++||||.++|...+.+.+++++||+++..+
T Consensus 150 ~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~ 219 (445)
T PRK08525 150 ALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFE 219 (445)
T ss_pred HHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEE
Confidence 9999999999999985 789999999999999999865567999999999977766678999999999865
No 15
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=9.8e-29 Score=225.21 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=120.3
Q ss_pred eEEEEeCCCCCC-CCCCceee--cCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCC-chHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC--GFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGP-YPADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~-~~~~~ 126 (202)
||.+|++.+.+. .++||+.. .+++++++|||+|+|+.+||++| |. |.+.||+|+|+++|.++..... +.+.+
T Consensus 81 GH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~ 160 (484)
T PRK07272 81 GHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKE 160 (484)
T ss_pred EEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 778888887543 68999976 45789999999999999999999 53 8999999999999986421110 12378
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++++. ++|+++|||+|+||||||...++.++||||.+||..++.+.+++++|||++..+
T Consensus 161 ~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~ 230 (484)
T PRK07272 161 ALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIID 230 (484)
T ss_pred HHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEE
Confidence 9999999999999986 789999999999999999875667999999999988877789999999999765
No 16
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.8e-28 Score=222.82 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=118.7
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc---hH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY---PA 124 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~---~~ 124 (202)
||.+|++.+.+. .++||+... .++++++|||+|+|+.+||++| |. |.+.||+|+|+++|.+..+.|.. .+
T Consensus 103 GHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai 182 (500)
T PRK07349 103 GHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAA 182 (500)
T ss_pred EEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHH
Confidence 678888876543 689999764 4789999999999999999998 43 89999999999999764333322 13
Q ss_pred HHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEEC---CceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 125 DQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAA---DGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 125 ~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~---dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
.+++++|+|+|||++++. ++|+++|||+|+||||||... ++.++||||.++|...+.+.+++++|||++..+
T Consensus 183 ~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~ 257 (500)
T PRK07349 183 ISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWIT 257 (500)
T ss_pred HHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEE
Confidence 689999999999999875 789999999999999999862 347999999999987776789999999999864
No 17
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.96 E-value=6.5e-29 Score=200.67 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=116.5
Q ss_pred chHHHHhccCCCCCcccccccc----eeEEEEeCCC---CCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcCCCCCCC
Q 028867 32 EDTLSDFLSRHSDNTFSMNFGH----AAVLAYVPPH---SPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTD 104 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~~g~----~~~l~~~~~~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg~~~~~~ 104 (202)
.+|++.+++|+| |....+..+ ...++.++.. .. .+.||+...+++++++|||+|||+.+|++ +.+
T Consensus 22 ~~m~~~l~hRGP-D~~~~~~~~~~~~~~~l~~~rL~i~~~~-~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~s 93 (181)
T cd03766 22 EELLPNLRNRGP-DYLSTRQLSVTNWTLLFTSSVLSLRGDH-VTRQPLVDQSTGNVLQWNGELYNIDGVED------EEN 93 (181)
T ss_pred HHHHHHHHhcCC-CccCCEEeeccccEEEEEeeEEEecCCC-CCCCCCEeCCCCEEEEECCEEECcccccC------CCC
Confidence 578899999999 765544321 1233333221 12 56999988777899999999999999874 789
Q ss_pred HHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEEC-CceEEEEechhhHhhhcc
Q 028867 105 EAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAA-DGSVVISDDLEVIKEGCA 183 (202)
Q Consensus 105 D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~-dg~~~faSe~~aL~~~~~ 183 (202)
|+|+|+++|+++... ...+.+++++|+|+||||+||..+++++++|||+|+|||||+..+ ++.++|||+..... ..
T Consensus 94 DtEvi~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~--~~ 170 (181)
T cd03766 94 DTEVIFELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS--GS 170 (181)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC--CC
Confidence 999999999865310 012358999999999999999999999999999999999999875 67899999986442 22
Q ss_pred cceEEeCCCcE
Q 028867 184 KSFAPFPQGKL 194 (202)
Q Consensus 184 ~~~~~~ppG~~ 194 (202)
.+.++||+-+
T Consensus 171 -~~~e~~~~g~ 180 (181)
T cd03766 171 -GFQEVLAGGI 180 (181)
T ss_pred -ceEECCCCcc
Confidence 5889999644
No 18
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.7e-28 Score=221.93 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=118.0
Q ss_pred eEEEEeCCCCCC-CCCCceee--cCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhH-hcCCc-hHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC--GFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLR-DRGPY-PAD 125 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~-~~G~~-~~~ 125 (202)
||.+|++.+.+. .++||+.. ..+.++++|||+|+|+.+||++| |. |.+.||+|+|+++|.+.. +++.. .+.
T Consensus 87 GH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~ 166 (474)
T PRK06388 87 GHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFE 166 (474)
T ss_pred eeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 678888876442 68999873 25789999999999999999999 44 899999999999996432 23321 236
Q ss_pred HHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 126 QVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 126 ~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
+++++|+|+|||++++. ++|+++|||+|+||||||.. ++.++||||.++|...+.+.+++++|||++..+
T Consensus 167 ~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~ 236 (474)
T PRK06388 167 RSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVF 236 (474)
T ss_pred HHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEE
Confidence 89999999999999965 79999999999999999997 456999999999998877679999999997654
No 19
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.96 E-value=2.4e-28 Score=229.74 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=129.6
Q ss_pred chHHHHhccCCCCCcccccccceeEEEEeC---CCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCC
Q 028867 32 EDTLSDFLSRHSDNTFSMNFGHAAVLAYVP---PHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTD 104 (202)
Q Consensus 32 ~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~---~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~ 104 (202)
..|.+.+.+|+| +...++..+...+++.+ .+.. .+.||+.+.+++++++|||+|||+.||+++| |. +.+.+
T Consensus 22 ~~m~~~l~hRGp-D~~g~~~~~~~~lgh~rl~i~d~~-~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~s 99 (628)
T TIGR03108 22 RRMNDAQAHRGP-DGGGVHVEPGIGLGHRRLSIIDLS-GGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRS 99 (628)
T ss_pred HHHHHHhcCCCC-CccCeEeeCCEEEEEEeeeecCCC-CCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCC
Confidence 457788999999 77666554433343333 3322 5799999888899999999999999999988 44 78999
Q ss_pred HHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhc--
Q 028867 105 EAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGC-- 182 (202)
Q Consensus 105 D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~-- 182 (202)
|+|+|+++|++ +| .+++++|+|+|||++||..+++++++||++|+|||||+...++.++||||+++|....
T Consensus 100 D~Evi~~~~~~---~g----~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~~~ 172 (628)
T TIGR03108 100 DTEVIVHAWEE---WG----EACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSL 172 (628)
T ss_pred hHHHHHHHHHH---HH----HHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCCCC
Confidence 99999999996 46 6899999999999999999999999999999999999976567899999999985321
Q ss_pred ------------------------ccceEEeCCCcEEEcc
Q 028867 183 ------------------------AKSFAPFPQGKLNFFS 198 (202)
Q Consensus 183 ------------------------~~~~~~~ppG~~~~~~ 198 (202)
.+.|..+||||+...+
T Consensus 173 ~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~ 212 (628)
T TIGR03108 173 PRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLR 212 (628)
T ss_pred CCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEE
Confidence 1358999999988643
No 20
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=6.5e-28 Score=219.42 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=118.9
Q ss_pred eEEEEeCCCCCC-CCCCceee--cCCcEEEEEEeEEccHHHHHHHc---C-CCCCCCHHHHHHHHHHHhHhcCC-chHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC--GFEDIYCLFMGSLNNLCSLIRQY---G-LSKGTDEAMFVIEAYRTLRDRGP-YPADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g-~~~~~~D~e~i~~~y~~~~~~G~-~~~~~ 126 (202)
||++|++.+.+. .++||+.. .+++++++|||+|+|+++||++| | .|.+.||+|+|+++|.++..... +.+.+
T Consensus 80 GHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~ 159 (471)
T PRK06781 80 GHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKE 159 (471)
T ss_pred EEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 678888877543 67999964 35789999999999999999998 4 38999999999999986531111 12378
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||+++|. ++++++|||+|+||||||.. ++.++||||.++|...+.+.+++++|||++..+
T Consensus 160 ~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~ 228 (471)
T PRK06781 160 ALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIIN 228 (471)
T ss_pred HHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEE
Confidence 8999999999999985 78999999999999999998 457999999999988777789999999999764
No 21
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=216.32 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=125.1
Q ss_pred cchHHHHhccCCCCCccc--ccccceeEEEEeCCCCCCCCCCceeec--CCcEEEEEEeEEccHHHHHHHc---CC-CCC
Q 028867 31 PEDTLSDFLSRHSDNTFS--MNFGHAAVLAYVPPHSPLTKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQY---GL-SKG 102 (202)
Q Consensus 31 ~~~l~~~f~~~~~~~~~~--~~~g~~~~l~~~~~~~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~-~~~ 102 (202)
.+-+.++|+.... +.+. +.+ ||.+|++.+.. .+.||+... ++.++++|||+|+|+.+||++| |. |.+
T Consensus 49 ~Glv~~vf~~~~~-~~l~g~~~I---GH~R~sT~G~~-~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s 123 (442)
T PRK08341 49 HGLVSEVFKGGSL-SRLKSNLAI---GHVRYSTSGSL-SEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRS 123 (442)
T ss_pred CCchhhhhccccc-ccCCCCEEE---EEeeccccCCC-cCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCC
Confidence 3456666655433 2222 233 77888888755 789999764 4789999999999999999998 43 899
Q ss_pred CCHHHHHHHHHHHhH-hcCCc--hHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHh
Q 028867 103 TDEAMFVIEAYRTLR-DRGPY--PADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIK 179 (202)
Q Consensus 103 ~~D~e~i~~~y~~~~-~~G~~--~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~ 179 (202)
.||+|+|++++.... ++|.. .+.+++++|+|+|||++++. ++|+++|||+|+||||||.. + .++||||.++|.
T Consensus 124 ~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~ 199 (442)
T PRK08341 124 SVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALR 199 (442)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHH
Confidence 999999998875432 22421 23678999999999999975 78999999999999999984 5 489999999999
Q ss_pred hhcccceEEeCCCcEEEcc
Q 028867 180 EGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 180 ~~~~~~~~~~ppG~~~~~~ 198 (202)
..+. .+++++|||++..+
T Consensus 200 ~~~~-~v~~l~PGeiv~i~ 217 (442)
T PRK08341 200 MFVN-EIRDVFPGEVFVVS 217 (442)
T ss_pred hhCC-eEEEeCCCEEEEEE
Confidence 8886 79999999999765
No 22
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.96 E-value=1.9e-27 Score=196.79 Aligned_cols=137 Identities=17% Similarity=0.245 Sum_probs=114.0
Q ss_pred eEEEEeCCCCC-CCCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCch---HHH
Q 028867 55 AVLAYVPPHSP-LTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPYP---ADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~-~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~~---~~~ 126 (202)
+|.++++.+.. ..+.||+...+++++++|||+|||+++|+++| |. +.+.||+|+|+++|.++.+.+... +.+
T Consensus 69 gH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~ 148 (215)
T cd00714 69 GHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKK 148 (215)
T ss_pred EEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45666555532 25799998777789999999999999999998 44 789999999999998765433221 368
Q ss_pred HhhhccCcEEEEEEECCCC-EEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEE
Q 028867 127 VVKDLDGSFAFVVYDSKAG-TVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNF 196 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~-~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~ 196 (202)
++++|+|+|||++||...+ +|+++|| .|||||+.. ++.++||||.++|...|. .+..+.+|++..
T Consensus 149 ~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~~~~~~~~~ 214 (215)
T cd00714 149 ALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTR-RVIYLEDGDIAV 214 (215)
T ss_pred HHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCCEEe
Confidence 9999999999999998764 9999999 499999987 567999999999999997 599999999874
No 23
>PLN02440 amidophosphoribosyltransferase
Probab=99.96 E-value=8e-28 Score=219.60 Aligned_cols=142 Identities=14% Similarity=0.193 Sum_probs=118.6
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHHHHc---C-CCCCCCHHHHHHHHHHHhHhcCCc-hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQY---G-LSKGTDEAMFVIEAYRTLRDRGPY-PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g-~~~~~~D~e~i~~~y~~~~~~G~~-~~~~ 126 (202)
+|++|++.+... .++||+... .++++++|||+|+|+.+||++| | .+.+.+|+|+|+++|.++.+.... ...+
T Consensus 70 GHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~ 149 (479)
T PLN02440 70 GHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVD 149 (479)
T ss_pred EEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHH
Confidence 678888876432 789999753 4679999999999999999998 4 388999999999999764211110 1278
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++||. ++|+++|||+|+|||||+..+++.++||||.++|...+.+.+++++|||++..+
T Consensus 150 ~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~ 219 (479)
T PLN02440 150 ACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVD 219 (479)
T ss_pred HHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEE
Confidence 9999999999999986 679999999999999999875667999999999988777789999999998765
No 24
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.5e-27 Score=217.59 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=117.9
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHHHHc---C-CCCCCCHHHHHHHHHHHhHhcCC-chHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQY---G-LSKGTDEAMFVIEAYRTLRDRGP-YPADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g-~~~~~~D~e~i~~~y~~~~~~G~-~~~~~ 126 (202)
||.+|++.+.+. .++||+... +++++++|||+|+|+.+||++| | .|.+.||+|+|+++|.++.+... +.+.+
T Consensus 91 GH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~ 170 (479)
T PRK09123 91 GHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFID 170 (479)
T ss_pred EEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 678887776433 789999763 5789999999999999999998 4 38999999999999986431110 01368
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++|+. ++|+++|||+|+|||||+.. ++.++||||.++|...+.+.+++++|||++..+
T Consensus 171 ~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~ 239 (479)
T PRK09123 171 ALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVID 239 (479)
T ss_pred HHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEe
Confidence 9999999999999986 69999999999999999997 557999999999987666679999999998765
No 25
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.5e-27 Score=218.52 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=117.7
Q ss_pred eEEEEeCCCCCC-CCCCceeec---CCcEEEEEEeEEccHHHHHHHc---CC------CCCCCHHHHHHHHHHHhHhcCC
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG---FEDIYCLFMGSLNNLCSLIRQY---GL------SKGTDEAMFVIEAYRTLRDRGP 121 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~---~~~~~lv~nG~I~N~~eL~~~l---g~------~~~~~D~e~i~~~y~~~~~~G~ 121 (202)
||.+|++.+.+. .++||+... .++++++|||+|+|+.+|+++| |. +.+.||+|+|++++..+.+.+.
T Consensus 93 GHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~ 172 (510)
T PRK07847 93 GHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADST 172 (510)
T ss_pred EeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCC
Confidence 677787766442 679998753 5789999999999999999998 43 7899999999999986532221
Q ss_pred c--hHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 122 Y--PADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 122 ~--~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
. .+.+++++|+|+|||+++|. ++|+++|||+|+|||||+.. ++.++||||.++|...+.+.+++++|||++..+
T Consensus 173 ~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~ 248 (510)
T PRK07847 173 LEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAID 248 (510)
T ss_pred HHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEE
Confidence 1 23679999999999999996 78999999999999999998 456999999999987755679999999999865
No 26
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.6e-27 Score=217.18 Aligned_cols=141 Identities=13% Similarity=0.172 Sum_probs=119.1
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc-hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY-PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~-~~~~ 126 (202)
||++|++.+.+. .++||+... +++++++|||+|+|+++||++| |. |.+.+|+|+|++++.++.+.+.. .+.+
T Consensus 85 GHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~ 164 (469)
T PRK05793 85 GHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVD 164 (469)
T ss_pred EEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 678888776432 689999764 5789999999999999999998 43 89999999999999865322211 2368
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++++. ++++++||+.|+|||||+.. ++.++||||.++|...+.+.+++++|||++..+
T Consensus 165 ~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~ 233 (469)
T PRK05793 165 AIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIID 233 (469)
T ss_pred HHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEE
Confidence 9999999999999985 78999999999999999998 457999999999988777789999999999765
No 27
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.8e-27 Score=218.39 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=117.7
Q ss_pred eEEEEeCCCCCC-CCCCceee-cCCcEEEEEEeEEccHHHHHHHc----C-CCCCCCHHHHHHHHHHHhHhc--C----C
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC-GFEDIYCLFMGSLNNLCSLIRQY----G-LSKGTDEAMFVIEAYRTLRDR--G----P 121 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l----g-~~~~~~D~e~i~~~y~~~~~~--G----~ 121 (202)
||++|++.+.+. .++||+.. ..++++++|||+|+|+++||++| + .+.+.||+|+|+++|.++... | .
T Consensus 70 GHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~ 149 (501)
T PRK09246 70 GHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTP 149 (501)
T ss_pred EEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCc
Confidence 678888877543 78999974 44569999999999999999988 2 378999999999999865321 2 1
Q ss_pred c----hHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEEC---CceEEEEechhhHhhhcccceEEeCCCcE
Q 028867 122 Y----PADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAA---DGSVVISDDLEVIKEGCAKSFAPFPQGKL 194 (202)
Q Consensus 122 ~----~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~---dg~~~faSe~~aL~~~~~~~~~~~ppG~~ 194 (202)
. .+.+++++|+|+|||+++.. .++|+++|||+|+||||||..+ ++.++||||.+||...+.+.+++++|||+
T Consensus 150 ~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGei 228 (501)
T PRK09246 150 EDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEA 228 (501)
T ss_pred cCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeE
Confidence 1 13578999999999998843 4679999999999999999873 34799999999999887778999999999
Q ss_pred EEcc
Q 028867 195 NFFS 198 (202)
Q Consensus 195 ~~~~ 198 (202)
+..+
T Consensus 229 v~i~ 232 (501)
T PRK09246 229 IYIT 232 (501)
T ss_pred EEEE
Confidence 8765
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.95 E-value=1.6e-26 Score=195.21 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=112.0
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCch------
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPYP------ 123 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~~------ 123 (202)
+|.++++.+... .++||+.. ++++++|||+|+|+.+||+.| |. +.+.||+|+++++|+...+.+..+
T Consensus 82 gH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~ 159 (249)
T cd01907 82 AHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKH 159 (249)
T ss_pred EEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 667777655322 68999865 489999999999999999988 43 899999999999997543222121
Q ss_pred ----------------HHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhc---cc
Q 028867 124 ----------------ADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGC---AK 184 (202)
Q Consensus 124 ----------------~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~---~~ 184 (202)
...++++|+|+|||++++. ++++++|||+|.|||||+.. ++.++||||.++|...+ .+
T Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~ 236 (249)
T cd01907 160 IIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNA 236 (249)
T ss_pred HhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchh
Confidence 1357899999999999986 67999999999999999998 56799999999998774 45
Q ss_pred ceEEeCCCcEEE
Q 028867 185 SFAPFPQGKLNF 196 (202)
Q Consensus 185 ~~~~~ppG~~~~ 196 (202)
.+.+++||+++.
T Consensus 237 ~~~~l~pGe~v~ 248 (249)
T cd01907 237 KVWEPRPGEYVI 248 (249)
T ss_pred eEecCCCCceEe
Confidence 799999999986
No 29
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.94 E-value=3.7e-26 Score=207.01 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=116.9
Q ss_pred eEEEEeCCCCCC-CCCCceee-cCCcEEEEEEeEEccHHHHHHHc---C-CCCCCCHHHHHHHHHHHhHhcCCc---hHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC-GFEDIYCLFMGSLNNLCSLIRQY---G-LSKGTDEAMFVIEAYRTLRDRGPY---PAD 125 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l---g-~~~~~~D~e~i~~~y~~~~~~G~~---~~~ 125 (202)
+|.+|++.+... .++|||.. ..++++++|||+|+|+++|++.| | .+.+.+|+|+|+++|.++...+.. .+.
T Consensus 70 gHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~ 149 (442)
T TIGR01134 70 GHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIA 149 (442)
T ss_pred EEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHH
Confidence 678887776432 68999974 34569999999999999999988 3 378999999999999875311111 136
Q ss_pred HHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEccc
Q 028867 126 QVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSH 199 (202)
Q Consensus 126 ~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~~ 199 (202)
+++++|+|.|||+++|. ++++++|||+|+|||||+.. ++.++||||.++|...+.+.+++++|||++..++
T Consensus 150 ~~~~~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~ 220 (442)
T TIGR01134 150 RVLKRVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDD 220 (442)
T ss_pred HHHHHhCccceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEEC
Confidence 89999999999999975 79999999999999999988 4579999999999865556799999999997653
No 30
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.94 E-value=5.9e-26 Score=185.91 Aligned_cols=141 Identities=22% Similarity=0.339 Sum_probs=117.0
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHcC----CCCCCCHHHHHHHHHHHhHhcCC--chHHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG----LSKGTDEAMFVIEAYRTLRDRGP--YPADQV 127 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg----~~~~~~D~e~i~~~y~~~~~~G~--~~~~~~ 127 (202)
+|.++.+.+... .++||+....++++++|||+|+|+.+|++.+. .+...+|+|+++++|.++.+.+. ..+.++
T Consensus 73 ~H~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~ 152 (220)
T cd00352 73 GHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDA 152 (220)
T ss_pred EEeEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 556666654322 68999877667899999999999999999883 37889999999999997643221 113689
Q ss_pred hhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEE
Q 028867 128 VKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLN 195 (202)
Q Consensus 128 l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~ 195 (202)
+++++|.|+|+++|..+++++++||+.|.|||||+...++.++||||..++...+...+.++|||+++
T Consensus 153 ~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 153 LKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred HHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 99999999999999988999999999999999999984567999999999987764569999999974
No 31
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.94 E-value=1.6e-25 Score=189.21 Aligned_cols=142 Identities=11% Similarity=0.157 Sum_probs=115.1
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHHHHcC---C-CCCCCHHHHHHHHHHHhHhcCC-c-hHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQYG---L-SKGTDEAMFVIEAYRTLRDRGP-Y-PAD 125 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~lg---~-~~~~~D~e~i~~~y~~~~~~G~-~-~~~ 125 (202)
+|.++++.+... .++||+... +++++++|||+|+|+++|+++|. . +.+.||+|+|+++|.++.+.+. . .+.
T Consensus 69 gH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~ 148 (252)
T cd00715 69 GHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAII 148 (252)
T ss_pred EEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHH
Confidence 455555554332 689999753 47899999999999999999883 3 6789999999999987542211 0 136
Q ss_pred HHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 126 QVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 126 ~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++.|+|.|||+++|. ++|+++||++|+|||||+...++.++||||.++|.....+.+++||||++++.+
T Consensus 149 ~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~ 219 (252)
T cd00715 149 DALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVID 219 (252)
T ss_pred HHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEE
Confidence 89999999999999997 899999999999999999985468999999999987544469999999999865
No 32
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.94 E-value=1.4e-25 Score=210.24 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=117.2
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc---hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY---PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~---~~~~ 126 (202)
+|.++++.+.+. .++||+...+++++++|||+|||+++||++| |. +.+.+|+|+|+++|.++.++|.. .+.+
T Consensus 70 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~ 149 (604)
T PRK00331 70 GHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRK 149 (604)
T ss_pred EEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 556666665432 5799998777899999999999999999998 44 78999999999999876444532 2378
Q ss_pred HhhhccCcEEEEEEECCC-CEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKA-GTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~-~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|...+. .+.+|+||+++..+
T Consensus 150 ~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~i~ 217 (604)
T PRK00331 150 ALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIAVLT 217 (604)
T ss_pred HHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEEEEE
Confidence 999999999999999886 899999996 99999987 557999999999998886 68999999998754
No 33
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.94 E-value=4.9e-26 Score=202.27 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=133.6
Q ss_pred CCCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCC-CCCCceeecC--CcEEEEEEeEEccHHHHHHHc---CC-C
Q 028867 28 PKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPL-TKDRRLFCGF--EDIYCLFMGSLNNLCSLIRQY---GL-S 100 (202)
Q Consensus 28 ~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~QP~~~~~--~~~~lv~nG~I~N~~eL~~~l---g~-~ 100 (202)
-|+-+-+.++|+.....+.+.- .-.-||++|++.+++. .++||++... +.++++|||+|.|..+||++| |. |
T Consensus 50 ~K~~GLV~dvF~~~~~~~~l~G-~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f 128 (470)
T COG0034 50 HKGMGLVSDVFNERDLLRKLQG-NVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIF 128 (470)
T ss_pred EecCccchhhcCchhhhhhccC-cceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCcee
Confidence 3455668888887655111211 1122889999998654 7899997654 469999999999999999999 43 8
Q ss_pred CCCCHHHHHHHHHHHhHh-cCCc-hHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhH
Q 028867 101 KGTDEAMFVIEAYRTLRD-RGPY-PADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVI 178 (202)
Q Consensus 101 ~~~~D~e~i~~~y~~~~~-~G~~-~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL 178 (202)
++++|+|+|++++.+... .+.. ...++++.++|.||+++... ++|+++|||.|+|||.+|..+||.++||||.+||
T Consensus 129 ~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Al 206 (470)
T COG0034 129 NTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCAL 206 (470)
T ss_pred cCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhh
Confidence 999999999999986321 1111 13678899999999999976 5999999999999999999877779999999999
Q ss_pred hhhcccceEEeCCCcEEE
Q 028867 179 KEGCAKSFAPFPQGKLNF 196 (202)
Q Consensus 179 ~~~~~~~~~~~ppG~~~~ 196 (202)
..++++.+++++|||++.
T Consensus 207 d~iGa~~vRdv~pGE~v~ 224 (470)
T COG0034 207 DILGAEFVRDVEPGEAVI 224 (470)
T ss_pred hcccceEEEecCCceEEE
Confidence 999999999999999998
No 34
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.93 E-value=2.2e-25 Score=208.95 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=115.4
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc---hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY---PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~---~~~~ 126 (202)
+|.|+++.+.+. .++||+...++.++++|||+|||+.+||++| |. +.+.+|+|+|+++|.++.+.|.. .+.+
T Consensus 69 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~ 148 (607)
T TIGR01135 69 GHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQK 148 (607)
T ss_pred EEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 556666555332 5799998777889999999999999999998 44 88999999999999876543322 1368
Q ss_pred HhhhccCcEEEEEEECCC-CEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKA-GTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~-~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++||+.. ++++++||+ |||||+.. ++.++||||.++|...+. .+.+++|||++..+
T Consensus 149 ~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~~~ 216 (607)
T TIGR01135 149 ALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIAILT 216 (607)
T ss_pred HHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEEEEE
Confidence 999999999999999865 569999995 99999986 567999999999998886 58899999998754
No 35
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.92 E-value=2.3e-24 Score=165.97 Aligned_cols=112 Identities=22% Similarity=0.349 Sum_probs=97.7
Q ss_pred eEEEEeCCCCC-CCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---C-CCCCCHHHHHHHHHHHhHhcCCchHHHHhh
Q 028867 55 AVLAYVPPHSP-LTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---L-SKGTDEAMFVIEAYRTLRDRGPYPADQVVK 129 (202)
Q Consensus 55 ~~l~~~~~~~~-~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~-~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~ 129 (202)
+|.|+.+.+.+ ..+.|||...+++++++|||+|+|+.+|+++++ . +.+.+|+|+|++++++ +| +++++
T Consensus 17 gH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~---~g----~~~l~ 89 (133)
T PF13522_consen 17 GHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHR---WG----EEALE 89 (133)
T ss_pred EEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHH---HH----HHHHH
Confidence 56777777655 245699966678899999999999999999994 3 7889999999999975 45 68999
Q ss_pred hccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEec
Q 028867 130 DLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDD 174 (202)
Q Consensus 130 ~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe 174 (202)
.|+|.|+|+++|...++++++||+.|.|||||+.. ++.++||||
T Consensus 90 ~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 90 RLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99999999999998899999999999999999998 568999998
No 36
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.92 E-value=2.7e-24 Score=202.79 Aligned_cols=139 Identities=13% Similarity=0.225 Sum_probs=116.7
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc---hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY---PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~---~~~~ 126 (202)
||.|+++.+.+. .++||+...+++++++|||+|+|+.+||++| |. |.+.+|+|+|+++|....++|.. .+.+
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~ 179 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKS 179 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 667777776432 6899998767899999999999999999998 44 89999999999999754344432 2368
Q ss_pred HhhhccCcEEEEEEECC-CCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSK-AGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~-~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++||.. .++|+++||+ ||||||.. ++.++||||.++|...+. .+..++||+++..+
T Consensus 180 ~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pGei~~i~ 247 (640)
T PTZ00295 180 AISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTN-EYISLKDGEIAELS 247 (640)
T ss_pred HHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCc-EEEEeCCCeEEEEE
Confidence 99999999999999976 5899999997 99999987 457999999999998887 47789999998754
No 37
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.1e-24 Score=186.63 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=134.3
Q ss_pred CCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCC-CCCCceeecC--CcEEEEEEeEEccHHHHHHHc---CC-CC
Q 028867 29 KLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPL-TKDRRLFCGF--EDIYCLFMGSLNNLCSLIRQY---GL-SK 101 (202)
Q Consensus 29 ~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~QP~~~~~--~~~~lv~nG~I~N~~eL~~~l---g~-~~ 101 (202)
|+-+=+.++|++.+. +.+.-.+|= ||++|++.+.+. .+.|||+... +.++++|||++-|+++||+.+ |. +.
T Consensus 49 kG~Gmv~dVFte~~l-~~L~g~~gI-GH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~ 126 (474)
T KOG0572|consen 49 KGMGLVSDVFTEDKL-SQLPGSIGI-GHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLN 126 (474)
T ss_pred eccchhhhhhcHHHH-hhCccceee-eeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccc
Confidence 344457888988776 555533322 789999988654 7899998754 679999999999999999998 43 88
Q ss_pred CCCHHHHHHHHHHHh-----HhcCCc---hHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCc----eE
Q 028867 102 GTDEAMFVIEAYRTL-----RDRGPY---PADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADG----SV 169 (202)
Q Consensus 102 ~~~D~e~i~~~y~~~-----~~~G~~---~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg----~~ 169 (202)
|.||+|+|++++... +..+++ .+..+++.++|.||+|+.-. ++||+.|||+|.|||+.|...+. .+
T Consensus 127 T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~ 204 (474)
T KOG0572|consen 127 TSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAW 204 (474)
T ss_pred cCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceE
Confidence 999999999998642 112322 14789999999999999965 77999999999999999987543 79
Q ss_pred EEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 170 VISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 170 ~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++|||.++|..++++..+++.|||++..+
T Consensus 205 v~aSESc~f~~i~a~y~Rev~PGEiV~i~ 233 (474)
T KOG0572|consen 205 VVASESCAFLSIGARYEREVRPGEIVEIS 233 (474)
T ss_pred EEEecceeeeecccEEEEeecCceEEEEe
Confidence 99999999999988899999999998654
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.89 E-value=2.7e-22 Score=189.82 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=117.5
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhH-hcCC-c---hH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLR-DRGP-Y---PA 124 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~-~~G~-~---~~ 124 (202)
||.+|++.+.+. .++||+...+++++++|||+|||+.+||++| |. |.+.||+|+|+|+++..+ ++|. . .+
T Consensus 102 gH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~~~a~ 181 (670)
T PTZ00394 102 AHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFADLA 181 (670)
T ss_pred EEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 667777776542 6799998877899999999999999999998 44 899999999998875433 2353 1 23
Q ss_pred HHHhhhccCcEEEEEEEC-CCCEEEEEEcCCCCceEEEEEECC--------------------ceEEEEechhhHhhhcc
Q 028867 125 DQVVKDLDGSFAFVVYDS-KAGTVFTALGSDGGVKLYWGIAAD--------------------GSVVISDDLEVIKEGCA 183 (202)
Q Consensus 125 ~~~l~~L~G~Fafvi~D~-~~~~l~~aRD~~G~rPLyyg~~~d--------------------g~~~faSe~~aL~~~~~ 183 (202)
.+++++|+|+|||++... ..++|+++||+ +||++|..++ +.++|||+..+|...|.
T Consensus 182 ~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~ 258 (670)
T PTZ00394 182 LEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTR 258 (670)
T ss_pred HHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHHhhc
Confidence 689999999999999864 34899999998 9999999742 47999999999999986
Q ss_pred cceEEeCCCcEEEcccc
Q 028867 184 KSFAPFPQGKLNFFSHY 200 (202)
Q Consensus 184 ~~~~~~ppG~~~~~~~~ 200 (202)
.+..|++|+++..+++
T Consensus 259 -~~~~l~dg~~~~~~~~ 274 (670)
T PTZ00394 259 -EVVFLEDGDIAHYCDG 274 (670)
T ss_pred -eEEEecCCeEEEEECC
Confidence 6999999999987643
No 39
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.88 E-value=5.8e-22 Score=187.98 Aligned_cols=141 Identities=11% Similarity=0.196 Sum_probs=114.4
Q ss_pred eEEEEeCCCCCC-CCCCceeecC-CcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhH-hcCC-----c
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGF-EDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLR-DRGP-----Y 122 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~-~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~-~~G~-----~ 122 (202)
||.||++.+.+. .++||+.... +.++++|||+|+|+.+||++| |. |.+.+|+|+|+|+++... .+|. .
T Consensus 91 GH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~ 170 (680)
T PLN02981 91 AHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVT 170 (680)
T ss_pred EEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCC
Confidence 678888776542 6799997643 679999999999999999998 44 899999999999954422 2221 1
Q ss_pred ---hHHHHhhhccCcEEEEEEECC-CCEEEEEEcCCCCceEEEEEEC--C---------------------ceEEEEech
Q 028867 123 ---PADQVVKDLDGSFAFVVYDSK-AGTVFTALGSDGGVKLYWGIAA--D---------------------GSVVISDDL 175 (202)
Q Consensus 123 ---~~~~~l~~L~G~Fafvi~D~~-~~~l~~aRD~~G~rPLyyg~~~--d---------------------g~~~faSe~ 175 (202)
.+.+++++|+|+|||++++.. .++++++||+ |||++|..+ + +.++||||.
T Consensus 171 ~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~ 247 (680)
T PLN02981 171 FSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDA 247 (680)
T ss_pred HHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCH
Confidence 236799999999999999965 3899999995 999999873 1 369999999
Q ss_pred hhHhhhcccceEEeCCCcEEEccc
Q 028867 176 EVIKEGCAKSFAPFPQGKLNFFSH 199 (202)
Q Consensus 176 ~aL~~~~~~~~~~~ppG~~~~~~~ 199 (202)
++|...+. .++.++||+++..+.
T Consensus 248 ~al~~~~~-~~~~l~~gei~~i~~ 270 (680)
T PLN02981 248 SAVVEHTK-RVLVIEDNEVVHLKD 270 (680)
T ss_pred HHHHHhcC-EEEEECCCeEEEEEC
Confidence 99998864 799999999998763
No 40
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.80 E-value=1.6e-18 Score=154.89 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=119.7
Q ss_pred CCCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---------
Q 028867 28 PKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY--------- 97 (202)
Q Consensus 28 ~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l--------- 97 (202)
-..|++|.+.|..... .++.-.+.= +|-+|+|...+. ..+||+. +++|||||+|+..+++.+
T Consensus 181 m~~~~~v~~~Y~DL~~-~~~~s~~al-~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s 252 (413)
T cd00713 181 MLLPEQLGQFYPDLQD-PRFESAFAL-VHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKS 252 (413)
T ss_pred cccHHHHHHhccccCc-ccceEEEEE-EEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcC
Confidence 3567888888876544 444422211 678888876554 7899973 489999999987776544
Q ss_pred ----------C-C-CCCCCHHHHHHHHHHHhHhcCCchH----------------------------HHHhhhccCcEEE
Q 028867 98 ----------G-L-SKGTDEAMFVIEAYRTLRDRGPYPA----------------------------DQVVKDLDGSFAF 137 (202)
Q Consensus 98 ----------g-~-~~~~~D~e~i~~~y~~~~~~G~~~~----------------------------~~~l~~L~G~Faf 137 (202)
+ + ..+.||++++.++++.+...|.... ..+++.++|+||+
T Consensus 253 ~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~ai 332 (413)
T cd00713 253 PLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAI 332 (413)
T ss_pred ccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 1 1 3468999999999975543343110 1456889999999
Q ss_pred EEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceE---EeCCCcEEEcc
Q 028867 138 VVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFA---PFPQGKLNFFS 198 (202)
Q Consensus 138 vi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~---~~ppG~~~~~~ 198 (202)
++.|. +.++++|||+|.|||+|+.++|+.+++|||.++|.. ....++ .+.||+++..+
T Consensus 333 v~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v~id 393 (413)
T cd00713 333 AFTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLVD 393 (413)
T ss_pred EEEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEEEEE
Confidence 99986 789999999999999999987778999999999965 334565 89999999764
No 41
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=6.3e-19 Score=162.71 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=117.8
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCch-HHHHh
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPYP-ADQVV 128 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~~-~~~~l 128 (202)
+|.|+.+.+.|. .++||+.+ ++++|||||.|.|+.+||++| |+ |.+++|||+|.|++.+..+.+... ...++
T Consensus 71 gHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l 148 (597)
T COG0449 71 AHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVL 148 (597)
T ss_pred eeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 667777777665 78999855 889999999999999999999 55 999999999999998765444222 37899
Q ss_pred hhccCcEEEEEEECCC-CEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEccc
Q 028867 129 KDLDGSFAFVVYDSKA-GTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSH 199 (202)
Q Consensus 129 ~~L~G~Fafvi~D~~~-~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~~ 199 (202)
++|+|+||+++.|... ++|++||. | .||..|.. +|..++||+..++...+. .+..+.+|++...+.
T Consensus 149 ~~l~Gsyal~~~~~~~p~~i~~ar~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t~-~~~~l~dgd~~~~~~ 215 (597)
T COG0449 149 KRLEGSYALLCTHSDFPDELVAARK--G-SPLVIGVG-EGENFLASDVSALLNFTR-RFVYLEEGDIAKLTT 215 (597)
T ss_pred HHhcceeEEEEEecCCCCeEEEEcC--C-CCeEEEec-CCcceEecChhhhhhhhc-eEEEeCCCCEEEEEC
Confidence 9999999999999876 79999998 3 99999997 667899999999999887 599999999987654
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.73 E-value=5.2e-17 Score=137.68 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=109.1
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHcC-----CCCCCCHHHHHHHHHHHhHhc-CC------
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG-----LSKGTDEAMFVIEAYRTLRDR-GP------ 121 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg-----~~~~~~D~e~i~~~y~~~~~~-G~------ 121 (202)
+|+++.+.+... .+.|||.. ++++++|||.|.|+.+|++.+. .+.+.+|+|++++++.+..+. +.
T Consensus 85 ~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~ 162 (257)
T cd01908 85 AHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAEL 162 (257)
T ss_pred EEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 677777766332 68999866 4899999999999999998872 278999999999998654322 21
Q ss_pred -chHHHHhhhcc-----CcEEEEEEECCCCEEEEEEcCCCCceEEEEEEC-----------------CceEEEEechhhH
Q 028867 122 -YPADQVVKDLD-----GSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAA-----------------DGSVVISDDLEVI 178 (202)
Q Consensus 122 -~~~~~~l~~L~-----G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~-----------------dg~~~faSe~~aL 178 (202)
..+.++++.|+ |.|+|++.|. ++|+++||+. .+||||+... ++.++||||..+.
T Consensus 163 ~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~ 239 (257)
T cd01908 163 LDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTD 239 (257)
T ss_pred HHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCC
Confidence 12377888898 7899988876 7899999988 8999999864 3579999999877
Q ss_pred hhhcccceEEeCCCcEEEcccc
Q 028867 179 KEGCAKSFAPFPQGKLNFFSHY 200 (202)
Q Consensus 179 ~~~~~~~~~~~ppG~~~~~~~~ 200 (202)
.. .++++|||+++..+++
T Consensus 240 ~~----~w~~v~~ge~~~i~~~ 257 (257)
T cd01908 240 DE----GWTEVPPGELVVVSEG 257 (257)
T ss_pred CC----CceEeCCCEEEEEeCC
Confidence 54 4999999999987753
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.71 E-value=1.9e-16 Score=133.99 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=103.5
Q ss_pred eEEEEeCCCCC-C-CCCCceeecCCcEEEEEEeEEccHH-----HHHHHcC-----CCCCCCHHHHHHHHHHHhHhc-CC
Q 028867 55 AVLAYVPPHSP-L-TKDRRLFCGFEDIYCLFMGSLNNLC-----SLIRQYG-----LSKGTDEAMFVIEAYRTLRDR-GP 121 (202)
Q Consensus 55 ~~l~~~~~~~~-~-~~~QP~~~~~~~~~lv~nG~I~N~~-----eL~~~lg-----~~~~~~D~e~i~~~y~~~~~~-G~ 121 (202)
+|+++.+.+.+ . .++|||.. ++++++|||.|.|++ +|+++|. .+.+.||+|++.+++....+. .+
T Consensus 87 ~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~ 164 (251)
T TIGR03442 87 AAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDP 164 (251)
T ss_pred EEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 67888887642 2 68999873 789999999999987 5666662 378999999999988654222 11
Q ss_pred ch----HHHHhhhccCc-------EEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeC
Q 028867 122 YP----ADQVVKDLDGS-------FAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFP 190 (202)
Q Consensus 122 ~~----~~~~l~~L~G~-------Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~p 190 (202)
.. +.++++.|.|. |+|++.|. ++|++.||+. ||||+..+ +.++||||. |.. . ..++++|
T Consensus 165 ~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~~-~~~vvASEp--l~~-~-~~W~~v~ 234 (251)
T TIGR03442 165 RALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKDP-EGVIVASEP--YDD-D-PGWQDVP 234 (251)
T ss_pred chHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEcC-CEEEEEeCC--cCC-C-CCceEeC
Confidence 12 35778888888 99999985 8999999985 99999874 469999999 322 1 2799999
Q ss_pred CCcEEEcccc
Q 028867 191 QGKLNFFSHY 200 (202)
Q Consensus 191 pG~~~~~~~~ 200 (202)
||+++..+++
T Consensus 235 pge~v~i~~~ 244 (251)
T TIGR03442 235 DRHLLSVSED 244 (251)
T ss_pred CCeEEEEECC
Confidence 9999987653
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.67 E-value=9.9e-16 Score=135.65 Aligned_cols=138 Identities=19% Similarity=0.230 Sum_probs=96.8
Q ss_pred CCCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---C-CCCC
Q 028867 28 PKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---G-LSKG 102 (202)
Q Consensus 28 ~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g-~~~~ 102 (202)
-..+++|.+.|..... ..+.-.++= +|.||+|...+. ..+|||. +++|||||.|...+++.+ + ...+
T Consensus 175 ~~~~~~l~~~y~Dl~~-~~~~s~~~i-~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~ 246 (361)
T PF00310_consen 175 MGTPEQLAEFYPDLQD-EDFKSHFAI-GHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNS 246 (361)
T ss_dssp CC-GGGHHHHCCGGGC-TTEEBSEEE-EEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSS
T ss_pred ccCHHHHHHHHHhhcc-ccccceEEE-EEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccC
Confidence 5567888888865443 343322211 789999987665 7899985 899999999999988876 2 2343
Q ss_pred ----------------CCHHHHHHHHHHHhHhcCC--------------------c-h-------HHHHhhhccCcEEEE
Q 028867 103 ----------------TDEAMFVIEAYRTLRDRGP--------------------Y-P-------ADQVVKDLDGSFAFV 138 (202)
Q Consensus 103 ----------------~~D~e~i~~~y~~~~~~G~--------------------~-~-------~~~~l~~L~G~Fafv 138 (202)
.||+|++.++++.+...|. . . ...++..++|.|+++
T Consensus 247 ~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~ 326 (361)
T PF00310_consen 247 PLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAII 326 (361)
T ss_dssp TTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEE
T ss_pred ccccchhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEE
Confidence 8999999999876544451 0 0 145678899999999
Q ss_pred EEECCCCEEEEEEcCCCCceEEEEEECCceEEEEech
Q 028867 139 VYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDL 175 (202)
Q Consensus 139 i~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~ 175 (202)
+.|. +.++++|||.|.||+.|+.++|+.+++|||.
T Consensus 327 ~~~g--~~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 327 FTDG--NGVGAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp EECS--SEEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred EEeC--CEEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 9976 5799999999999999999988889999984
No 45
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.47 E-value=6.3e-13 Score=118.41 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=98.8
Q ss_pred cchHHHHhccCCCCCcccccccce--------eEEEEeCCCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcCCCCC
Q 028867 31 PEDTLSDFLSRHSDNTFSMNFGHA--------AVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKG 102 (202)
Q Consensus 31 ~~~l~~~f~~~~~~~~~~~~~g~~--------~~l~~~~~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg~~~~ 102 (202)
..+|...+..++|...-++..... ..+-+.. +...||+.. +++.++.|||+|||-. ...+
T Consensus 20 ~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG----~~t~Qpvv~-d~~~vfl~NGeIyn~~-------~s~~ 87 (520)
T KOG0573|consen 20 SEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG----YLTKQPVVE-DDRYVFLFNGEIYNGE-------KSDT 87 (520)
T ss_pred hhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee----eeccCceec-ccceEEEecceeccCC-------Cccc
Confidence 345667777777733333322211 1222222 145899644 5668999999999964 2456
Q ss_pred CCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhc
Q 028867 103 TDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGC 182 (202)
Q Consensus 103 ~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~ 182 (202)
..|+.+|++......+. ..+.+.++.++|.|||++||.+.++||.+||++|+|+|.|..++.+...+.|.... .
T Consensus 88 ~~d~~~l~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~----~ 161 (520)
T KOG0573|consen 88 LFDTDILAEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGT----S 161 (520)
T ss_pred cchHHHHHHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeecccc----C
Confidence 67999999988764322 23678889999999999999999999999999999999999987664443333211 1
Q ss_pred ccceEEeCCC
Q 028867 183 AKSFAPFPQG 192 (202)
Q Consensus 183 ~~~~~~~ppG 192 (202)
.+.+.+|||+
T Consensus 162 ~~~i~e~~~~ 171 (520)
T KOG0573|consen 162 GKLIYEVPPV 171 (520)
T ss_pred CccccccCch
Confidence 2236688887
No 46
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.43 E-value=2e-12 Score=129.04 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=112.3
Q ss_pred CCcchHHHHhccCCCCCccc--ccccceeEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEc----cHHHHHHH---c-
Q 028867 29 KLPEDTLSDFLSRHSDNTFS--MNFGHAAVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLN----NLCSLIRQ---Y- 97 (202)
Q Consensus 29 ~~~~~l~~~f~~~~~~~~~~--~~~g~~~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~----N~~eL~~~---l- 97 (202)
..|++|.+-|..... +++. +++ .|-+|+|..-|+ ..+|||- .++|||||. |...++.+ +
T Consensus 193 l~~~ql~~fY~DL~d-~~~~s~~al---~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~ 262 (1485)
T PRK11750 193 MMPADLPRFYLDLAD-LRLESAICV---FHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQ 262 (1485)
T ss_pred ccHHHHHHhhhhhCC-cceeEEEEE---EECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhcc
Confidence 566777777775433 3333 334 567787776554 7899962 469999995 44333321 1
Q ss_pred -----------CC-CCCCCHHHHHHHHHHHhHhcCCc--------------------h-HHH-------HhhhccCcEEE
Q 028867 98 -----------GL-SKGTDEAMFVIEAYRTLRDRGPY--------------------P-ADQ-------VVKDLDGSFAF 137 (202)
Q Consensus 98 -----------g~-~~~~~D~e~i~~~y~~~~~~G~~--------------------~-~~~-------~l~~L~G~Faf 137 (202)
.+ ....||++.+-.+++-+-..|.. + .++ ++.-++|+||+
T Consensus 263 s~~~~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaai 342 (1485)
T PRK11750 263 TPLIPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGI 342 (1485)
T ss_pred CCCcchHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEE
Confidence 11 35678999988777644333321 0 112 34557999999
Q ss_pred EEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceE--EeCCCcEEEcc
Q 028867 138 VVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFA--PFPQGKLNFFS 198 (202)
Q Consensus 138 vi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~--~~ppG~~~~~~ 198 (202)
++.|. +.+++.|||+|.|||.|+.++|+.+++|||.+++....++.++ ++.||+++..+
T Consensus 343 v~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 343 VMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred EEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 99986 8999999999999999999878889999999999866666677 89999999764
No 47
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.28 E-value=2.1e-11 Score=110.57 Aligned_cols=106 Identities=20% Similarity=0.326 Sum_probs=81.8
Q ss_pred eEEEEeCCCCCC-CCCCceeec-CCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc--h---
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG-FEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY--P--- 123 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~-~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~--~--- 123 (202)
.|.++.+-+.++ .+.+|+.+. .+.++++|||.|.|+++|+..| |. |.+++|+|+++.+++...+.-+. +
T Consensus 84 AHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~ 163 (670)
T KOG1268|consen 84 AHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHV 163 (670)
T ss_pred eeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHH
Confidence 466666666665 789998653 4779999999999999999988 55 89999999999999865443331 1
Q ss_pred -HHHHhhhccCcEEEEEEECC-CCEEEEEEcCCCCceEEEEE
Q 028867 124 -ADQVVKDLDGSFAFVVYDSK-AGTVFTALGSDGGVKLYWGI 163 (202)
Q Consensus 124 -~~~~l~~L~G~Fafvi~D~~-~~~l~~aRD~~G~rPLyyg~ 163 (202)
.+.++++|+|+|++++-... .+++.+.|+ | .||..|.
T Consensus 164 lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGv 202 (670)
T KOG1268|consen 164 LVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGV 202 (670)
T ss_pred HHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeee
Confidence 37789999999999976443 378999998 4 6676654
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.62 E-value=3.8e-07 Score=78.17 Aligned_cols=135 Identities=20% Similarity=0.319 Sum_probs=66.7
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHH-HHcCCCCCCCHHHHHHHHHHH-hHhcCC---ch---
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLI-RQYGLSKGTDEAMFVIEAYRT-LRDRGP---YP--- 123 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~-~~lg~~~~~~D~e~i~~~y~~-~~~~G~---~~--- 123 (202)
.|++..+.+... .+.|||... .++.+++|||.|.++..++ ..|. ....||+|.+..++-. +.+.++ ..
T Consensus 76 aHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~ 154 (271)
T PF13230_consen 76 AHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEE 154 (271)
T ss_dssp EEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHH
T ss_pred EEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHH
Confidence 455555544222 689998753 2578999999999876554 2333 5688999999888743 222221 11
Q ss_pred ----HHHHhhhcc--CcEEEEEEECCCCEEEEEEcCCCCceEEEE------------------------EECCceEEEEe
Q 028867 124 ----ADQVVKDLD--GSFAFVVYDSKAGTVFTALGSDGGVKLYWG------------------------IAADGSVVISD 173 (202)
Q Consensus 124 ----~~~~l~~L~--G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg------------------------~~~dg~~~faS 173 (202)
+.++++.+. |.++|++.|. +.|++.|+ +.|||. ...+..++|||
T Consensus 155 ~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~----~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaS 228 (271)
T PF13230_consen 155 LFEALRELAKEINEYGSLNFLLSDG--ERLFAHRY----TSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVAS 228 (271)
T ss_dssp HHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEE----ESSS----------------------EEEEETTTTEEEEES
T ss_pred HHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEc----CCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEe
Confidence 134455554 6788999886 79999998 223332 01234678888
Q ss_pred chhhHhhhcccceEEeCCCcEEEcccc
Q 028867 174 DLEVIKEGCAKSFAPFPQGKLNFFSHY 200 (202)
Q Consensus 174 e~~aL~~~~~~~~~~~ppG~~~~~~~~ 200 (202)
|.=. . ...++++|+|+++..++|
T Consensus 229 ePLt--~--~e~W~~vp~g~~l~~~~G 251 (271)
T PF13230_consen 229 EPLT--D--DEDWEPVPPGSLLVFRDG 251 (271)
T ss_dssp S--------SS--EE--SSEEEE----
T ss_pred ccCC--C--CCCeEEcCCCcEEEEecc
Confidence 7532 2 235999999999987765
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.33 E-value=1.9e-06 Score=76.42 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=101.2
Q ss_pred CCCcchHHHHhccCCCCCccc--ccccceeEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---C-CC
Q 028867 28 PKLPEDTLSDFLSRHSDNTFS--MNFGHAAVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---G-LS 100 (202)
Q Consensus 28 ~~~~~~l~~~f~~~~~~~~~~--~~~g~~~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g-~~ 100 (202)
-..|++|.+-+....- .+.. +++ +|-+++|..-++ ..+|||- .++|||||.++.--++.+ + .+
T Consensus 182 ~~~p~~V~~~y~dl~~-~~~~s~~~l---~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~ 251 (371)
T COG0067 182 VGLPEDVAEFYLDLDD-ERYKSAIAL---VHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKF 251 (371)
T ss_pred ccCHHHHHHHHhhccc-hhhceeEEE---EEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhccc
Confidence 5567778875433332 2333 344 667888876554 7899962 349999998765444444 2 48
Q ss_pred CCCCHHHHHHHHHHHhHhcCCch-----H----------HHHhhhccCcEEEEEEEC-CCCEEEEEEcCCCCceEEEEEE
Q 028867 101 KGTDEAMFVIEAYRTLRDRGPYP-----A----------DQVVKDLDGSFAFVVYDS-KAGTVFTALGSDGGVKLYWGIA 164 (202)
Q Consensus 101 ~~~~D~e~i~~~y~~~~~~G~~~-----~----------~~~l~~L~G~Fafvi~D~-~~~~l~~aRD~~G~rPLyyg~~ 164 (202)
.+.+|+|.+.+++-...+.|.+. . ..-...|.|+||++.-.. ..+...+.+|+.+.+|.+-|-.
T Consensus 252 ~s~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa 331 (371)
T COG0067 252 ESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA 331 (371)
T ss_pred ccCccHHHHHHHHHHhcccCCcchhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc
Confidence 88999999988885332222211 0 233457889999887532 2456788899999999988876
Q ss_pred CCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 165 ADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 165 ~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
+..+.++|+..|++..++ +.|+.++..+
T Consensus 332 -~~~f~dgse~gA~ldrng-----Lrp~Ry~~t~ 359 (371)
T COG0067 332 -DIVFTDGSEEGAILDRNG-----LRPARYWITK 359 (371)
T ss_pred -ceeEEeeeeeeeeeccCC-----CCcceEEEec
Confidence 557888999988876654 4444444443
No 50
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.92 E-value=0.00014 Score=58.31 Aligned_cols=92 Identities=21% Similarity=0.307 Sum_probs=63.9
Q ss_pred CcEEEEEEeEEccHHHHHHHcCC----CCCCCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEc
Q 028867 77 EDIYCLFMGSLNNLCSLIRQYGL----SKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALG 152 (202)
Q Consensus 77 ~~~~lv~nG~I~N~~eL~~~lg~----~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD 152 (202)
.+-..-.-|.|||+.-|+.-.|. ...-+|+|+++.++.++ | ..++.--+|+|+|.|=|+ +++|.+..|
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~l---G----~~aLsLAEGdfcffiE~k-ng~L~l~Td 118 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRL---G----NSALSLAEGDFCFFIEDK-NGELTLITD 118 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEET-TSEEEEEE-
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHh---h----hhhhhhhcCceEEEEecC-CCcEEEEec
Confidence 34455567999999888876664 34579999999999865 5 688999999999999875 699999999
Q ss_pred CCCCceEEEEEECCceEEEEechhhH
Q 028867 153 SDGGVKLYWGIAADGSVVISDDLEVI 178 (202)
Q Consensus 153 ~~G~rPLyyg~~~dg~~~faSe~~aL 178 (202)
+.|..|.|.-++. ..|+...+|..
T Consensus 119 s~G~~pv~lV~~~--~~WiTn~LK~V 142 (201)
T PF09147_consen 119 SRGFNPVYLVQSK--FIWITNSLKLV 142 (201)
T ss_dssp SSSSS-EEEEESS--SEEEES-HHHH
T ss_pred CCCCceEEEEecC--ceEEecceEEE
Confidence 9999999987753 56777766554
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.29 E-value=0.049 Score=46.36 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=27.4
Q ss_pred CCCCceeecC--CcEEEEEEeEEccHHHH-HHHcCCCCCCCHHHHHH
Q 028867 67 TKDRRLFCGF--EDIYCLFMGSLNNLCSL-IRQYGLSKGTDEAMFVI 110 (202)
Q Consensus 67 ~~~QP~~~~~--~~~~lv~nG~I~N~~eL-~~~lg~~~~~~D~e~i~ 110 (202)
.+.|||+... ...+++|||.|.+++.+ ...+. ....+|.+...
T Consensus 88 ~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~~ 133 (252)
T COG0121 88 SNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAAF 133 (252)
T ss_pred cCCCCccccCCccceEEEecCcccCcccccccccC-CCCcchHHHHH
Confidence 7899987643 45689999999998763 32221 23345555443
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.11 E-value=0.53 Score=48.02 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=49.0
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcc--cceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCA--KSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~--~~~~~~ppG~~~~~~ 198 (202)
.+.-.+|.=-+.+-|. +.+-+.-|+.|.||-=|+.+.|+.++.|||.-.+.---. ..--.+.||.++..+
T Consensus 406 ~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred cCCCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 3566888876666665 567788899999999888988999999999765421000 012347788877543
No 53
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=82.18 E-value=2.7 Score=37.79 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechh
Q 028867 126 QVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLE 176 (202)
Q Consensus 126 ~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~ 176 (202)
.+..-.+|.=+.++.|. .++-+.||+.|.||-=|..++|+.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 35567889889999987 68899999999999999999899999999864
No 54
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=79.24 E-value=5.1 Score=26.69 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCC--ceEEE
Q 028867 105 EAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGG--VKLYW 161 (202)
Q Consensus 105 D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~--rPLyy 161 (202)
|.+-++..++.+++.| . +.-.-+ +.+|...+++++..|. |+ |||+.
T Consensus 13 ~p~~l~~~lr~~RR~g-----~----i~~~vs-i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 13 DPEELVKTLRNLRRSG-----K----ISKEVS-IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp SHHHHHHHHHHHHHTT-----S----S-TTSE-EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred CHHHHHHHHHHHhhcc-----C----CcceeE-EEEeccCCEEEEEccC-CcccceeEE
Confidence 4445556666554445 1 222234 4588889999999997 76 88875
No 55
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=48.69 E-value=7.4 Score=29.98 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=18.5
Q ss_pred cCcEEEEEEECCCCEEEEEEcCCCCceEE
Q 028867 132 DGSFAFVVYDSKAGTVFTALGSDGGVKLY 160 (202)
Q Consensus 132 ~G~Fafvi~D~~~~~l~~aRD~~G~rPLy 160 (202)
+|.|++|++.. ++++-..++ |++|||
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~r-Gv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDGR-GVKPLY 35 (134)
T ss_dssp HTT-SEEEESS--SEEEEE--S-TTHHHH
T ss_pred hCCceEEEEeC--CEEEEeCCC-ChHHHH
Confidence 47899999955 667776665 999998
No 56
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=34.46 E-value=20 Score=23.67 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=18.0
Q ss_pred CCCceeecCCcEEEEEEeEEccH
Q 028867 68 KDRRLFCGFEDIYCLFMGSLNNL 90 (202)
Q Consensus 68 ~~QP~~~~~~~~~lv~nG~I~N~ 90 (202)
..|-++..++.+.+-|||.+|-.
T Consensus 29 ~S~~Lfgg~~~i~I~H~Ga~Y~l 51 (63)
T COG4256 29 SSQTLFGGDGKIIIDHDGAEYLL 51 (63)
T ss_pred chhhcccCCCeEEEecCCceEEE
Confidence 35556777788999999999863
No 57
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=32.96 E-value=31 Score=27.31 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.2
Q ss_pred CcEEEEEEeEEccHHHHHH
Q 028867 77 EDIYCLFMGSLNNLCSLIR 95 (202)
Q Consensus 77 ~~~~lv~nG~I~N~~eL~~ 95 (202)
+++.+|+||+|-|...+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 6799999999999887653
No 58
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=32.59 E-value=33 Score=27.25 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.8
Q ss_pred CcEEEEEEeEEccHHHHH
Q 028867 77 EDIYCLFMGSLNNLCSLI 94 (202)
Q Consensus 77 ~~~~lv~nG~I~N~~eL~ 94 (202)
+++.+|+||+|-|...+.
T Consensus 33 DRisLV~~gqiinK~~Ia 50 (169)
T PRK11582 33 DRITLVFRGQIINKIAIS 50 (169)
T ss_pred hheeeeecceeecHHHHH
Confidence 679999999999987765
No 59
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=30.38 E-value=3e+02 Score=23.23 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=52.0
Q ss_pred EEEEEe--EEccHHHHHHHcCC-CCCCCHHHHHHHHHHHhHhcCCch-----HHHHhhhccC-cEEEEEEECCCCEEEEE
Q 028867 80 YCLFMG--SLNNLCSLIRQYGL-SKGTDEAMFVIEAYRTLRDRGPYP-----ADQVVKDLDG-SFAFVVYDSKAGTVFTA 150 (202)
Q Consensus 80 ~lv~nG--~I~N~~eL~~~lg~-~~~~~D~e~i~~~y~~~~~~G~~~-----~~~~l~~L~G-~Fafvi~D~~~~~l~~a 150 (202)
+..||| .|||+.-..+.+-- -.+....+.++.++++ +.|... .......+.| .|.+.++++..++|++.
T Consensus 92 a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~ 169 (234)
T KOG0876|consen 92 APKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFIL 169 (234)
T ss_pred hhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEE
Confidence 445564 78888755555521 1123333467777765 455432 1122233556 79999999888899999
Q ss_pred EcCCCCceEEEEE
Q 028867 151 LGSDGGVKLYWGI 163 (202)
Q Consensus 151 RD~~G~rPLyyg~ 163 (202)
+-..-.-||++..
T Consensus 170 ~T~Na~~P~~~~t 182 (234)
T KOG0876|consen 170 TTYNAGDPLVWTT 182 (234)
T ss_pred ecCCCCCCeeccC
Confidence 9988889999863
No 60
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=26.61 E-value=31 Score=24.57 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.0
Q ss_pred EEEcCCCCceEEEEEECCc
Q 028867 149 TALGSDGGVKLYWGIAADG 167 (202)
Q Consensus 149 ~aRD~~G~rPLyyg~~~dg 167 (202)
..++.+|++|||-|...|+
T Consensus 28 ~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 28 AMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHhcCCeEEEEecccCC
Confidence 4467889999999987653
No 61
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.05 E-value=89 Score=23.79 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=22.6
Q ss_pred hhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEE
Q 028867 128 VKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIA 164 (202)
Q Consensus 128 l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~ 164 (202)
-.+-+|.|++|.-+. ++.--+.| | +|||+...
T Consensus 86 ~dka~Gdysii~RkD--Gt~QWa~d--G-kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARKD--GTKQWAYD--G-KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEecC--chhhhhcC--C-ceeEEEee
Confidence 356789999998754 44445555 5 99998764
No 62
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=20.63 E-value=1.1e+02 Score=23.39 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=10.9
Q ss_pred ceEEeCCCcEEEcc
Q 028867 185 SFAPFPQGKLNFFS 198 (202)
Q Consensus 185 ~~~~~ppG~~~~~~ 198 (202)
.+.++.||.+|.-+
T Consensus 75 ~~~~i~pGt~YaLd 88 (126)
T PF06339_consen 75 EVHPIKPGTMYALD 88 (126)
T ss_pred cEEEcCCCeEEecC
Confidence 57889999998643
Done!