Query 028867
Match_columns 202
No_of_seqs 190 out of 1335
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 1.1E-30 3.6E-35 241.2 16.9 157 33-199 22-184 (553)
2 1xff_A D-fructose-6-, glucosam 100.0 1.1E-28 3.7E-33 205.8 17.9 138 55-199 70-216 (240)
3 1ao0_A Glutamine phosphoribosy 100.0 5E-29 1.7E-33 225.4 16.7 141 55-198 69-218 (459)
4 1ecf_A Glutamine phosphoribosy 100.0 4.5E-27 1.6E-31 214.8 19.3 143 55-198 70-233 (504)
5 1jgt_A Beta-lactam synthetase; 99.9 7.5E-28 2.5E-32 220.5 13.0 121 68-198 56-196 (513)
6 2bpl_A Glucosamine--fructose-6 99.9 6.6E-26 2.3E-30 211.1 17.6 137 55-198 70-215 (608)
7 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 8.7E-26 3E-30 206.3 8.8 133 49-198 28-189 (503)
8 3mdn_A Glutamine aminotransfer 99.9 1E-23 3.4E-28 179.3 11.4 138 55-199 86-249 (274)
9 1te5_A Conserved hypothetical 99.8 1.9E-20 6.3E-25 157.7 6.0 139 55-200 76-249 (257)
10 1ea0_A Glutamate synthase [NAD 99.8 3.3E-18 1.1E-22 169.7 14.2 159 28-198 182-394 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.7 1.2E-17 4E-22 166.1 13.3 159 28-198 178-393 (1520)
12 1vk9_A Conserved hypothetical 50.9 3 0.0001 31.7 -0.1 26 132-160 27-52 (151)
13 3qqz_A Putative uncharacterize 30.9 1.7E+02 0.0059 23.3 7.5 39 127-168 21-59 (255)
14 2riv_B Thyroxine-binding globu 29.7 79 0.0027 17.9 3.8 21 131-151 12-33 (40)
15 2xn6_B Thyroxine-binding globu 28.1 79 0.0027 17.3 3.8 15 132-146 8-22 (35)
16 3ndd_B Alpha-1-antitrypsin; se 27.6 83 0.0028 17.3 3.9 21 131-151 8-29 (36)
17 4afx_B Protein Z dependent pro 27.4 83 0.0029 17.3 3.6 21 131-151 8-29 (36)
18 1hle_B Horse leukocyte elastas 25.7 81 0.0028 16.6 3.9 15 132-146 7-21 (31)
19 2h4p_B MENT, heterochromatin-a 24.9 90 0.0031 16.8 3.9 15 132-146 8-22 (34)
20 1vcc_A DNA topoisomerase I; DN 21.2 78 0.0027 20.8 2.9 20 144-163 55-74 (77)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=99.97 E-value=1.1e-30 Score=241.21 Aligned_cols=157 Identities=19% Similarity=0.334 Sum_probs=133.2
Q ss_pred hHHHHhccCCCCCcccccccceeEEEEeC---CCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---CCCCCCHH
Q 028867 33 DTLSDFLSRHSDNTFSMNFGHAAVLAYVP---PHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---LSKGTDEA 106 (202)
Q Consensus 33 ~l~~~f~~~~~~~~~~~~~g~~~~l~~~~---~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~~~~~~D~ 106 (202)
+|++.+.+|+| +...++..+...+++++ .+.. .++||+.+.+++++++|||+|||+.+|+++|. .+.+.||+
T Consensus 22 ~m~~~l~hRGp-D~~G~~~~~~~~lgh~Rlsi~~~~-~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDt 99 (553)
T 1ct9_A 22 ELSRLMRHRGP-DWSGIYASDNAILAHERLSIVDVN-AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDC 99 (553)
T ss_dssp HHHHTTGGGCB-TEEEEEECSSEEEEEEECCCSCTT-TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTT
T ss_pred HHHHHHhccCC-CcccEEEECCEEEEEEeeeeeCCC-CCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcH
Confidence 45688899999 87776655444444444 3333 68999988888899999999999999999984 38899999
Q ss_pred HHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccce
Q 028867 107 MFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSF 186 (202)
Q Consensus 107 e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~ 186 (202)
|+|+++|++ +| .+++++|+|+|||++||..+++|+++||++|+|||||+...++.++||||.++|...+. .+
T Consensus 100 Evil~l~~~---~g----~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~-~i 171 (553)
T 1ct9_A 100 EVILALYQE---KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCR-TI 171 (553)
T ss_dssp HHHHHHHHH---HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCS-EE
T ss_pred HHHHHHHHH---HH----HHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcC-CE
Confidence 999999996 46 58999999999999999988999999999999999999854678999999999987775 69
Q ss_pred EEeCCCcEEEccc
Q 028867 187 APFPQGKLNFFSH 199 (202)
Q Consensus 187 ~~~ppG~~~~~~~ 199 (202)
.+|||||++..++
T Consensus 172 ~~l~pG~~~~~~~ 184 (553)
T 1ct9_A 172 KEFPAGSYLWSQD 184 (553)
T ss_dssp EECCTTEEEETTT
T ss_pred EEECCCeEEEEcC
Confidence 9999999998643
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.96 E-value=1.1e-28 Score=205.80 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=115.2
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCch---HHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPYP---ADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~~---~~~ 126 (202)
+|.++++.+.+. .++||+.. ++++++|||+|||+.+|+++| |. +.+.||+|+|+++|+.+...|... +.+
T Consensus 70 gH~R~at~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~ 147 (240)
T 1xff_A 70 AHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLR 147 (240)
T ss_dssp EEEECCSSSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEEeccCCCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 456666655432 68999876 789999999999999999988 44 899999999999998764334321 258
Q ss_pred HhhhccCcEEEEEEECC-CCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEccc
Q 028867 127 VVKDLDGSFAFVVYDSK-AGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSH 199 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~-~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~~ 199 (202)
++++|+|+|||++||.. .++|+++||+ |||||+.. ++.++||||.++|...+. .+.++|||+++..+.
T Consensus 148 ~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pG~~~~i~~ 216 (240)
T 1xff_A 148 AIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIAEITR 216 (240)
T ss_dssp HGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCS-EEEECCTTCEEEECS
T ss_pred HHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCC-eEEEECCCEEEEEEC
Confidence 99999999999999985 6899999997 99999987 567999999999988776 599999999998764
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.96 E-value=5e-29 Score=225.43 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=114.9
Q ss_pred eEEEEeCCCCCC-CCCCceee---cCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc-hHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFC---GFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY-PAD 125 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~---~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~-~~~ 125 (202)
+|.++++.+.+. .++||+.. .+++++++|||+|+|+.+||++| |. +.+.||+|+|+++|.++.+.... .+.
T Consensus 69 gH~R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~ 148 (459)
T 1ao0_A 69 GHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIK 148 (459)
T ss_dssp EEEECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHH
T ss_pred EEEecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHH
Confidence 567777766432 58999986 45789999999999999999998 43 89999999999999864210000 136
Q ss_pred HHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 126 QVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 126 ~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
+++++|+|+|||++||. ++|+++||++|+|||||+.. ++.++||||.++|.....+.++++||||++..+
T Consensus 149 ~~~~~l~G~fa~~i~d~--~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~ 218 (459)
T 1ao0_A 149 NSLSMLKGAYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIIN 218 (459)
T ss_dssp HHHTTCCEEEEEEEECS--SEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEE
T ss_pred HHHHhhccceEEEEEeC--CEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEE
Confidence 89999999999999984 89999999999999999998 567999999999987655579999999999764
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.95 E-value=4.5e-27 Score=214.84 Aligned_cols=143 Identities=11% Similarity=0.128 Sum_probs=117.8
Q ss_pred eEEEEeCCCCCC-CCCCceeecC-CcEEEEEEeEEccHHHHHHHc----C-CCCCCCHHHHHHHHHHHhHh-cCC-----
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGF-EDIYCLFMGSLNNLCSLIRQY----G-LSKGTDEAMFVIEAYRTLRD-RGP----- 121 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~-~~~~lv~nG~I~N~~eL~~~l----g-~~~~~~D~e~i~~~y~~~~~-~G~----- 121 (202)
+|.+|++.+.+. .++|||.... ++++++|||+|+|+.+||++| + .+.+.||+|+|+++|..+.+ +|.
T Consensus 70 gH~R~sT~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~ 149 (504)
T 1ecf_A 70 GHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEA 149 (504)
T ss_dssp EEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCH
T ss_pred EEEccCcCCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhcccccccc
Confidence 678888776542 6899997643 569999999999999999988 2 48999999999999987532 232
Q ss_pred c----hHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEEC--C--ceEEEEechhhHhhhcccceEEeCCCc
Q 028867 122 Y----PADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAA--D--GSVVISDDLEVIKEGCAKSFAPFPQGK 193 (202)
Q Consensus 122 ~----~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~--d--g~~~faSe~~aL~~~~~~~~~~~ppG~ 193 (202)
. .+.+++++|+|+|||++|+. .++|+++|||+|+|||||+..+ + +.++||||.++|...+.+.+++++|||
T Consensus 150 ~~~~~a~~~~~~~l~G~fa~v~~~~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe 228 (504)
T 1ecf_A 150 DNIFAAIAATNRLIRGAYACVAMII-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGE 228 (504)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEEET-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTE
T ss_pred ccHHHHHHHhhhhcCccceEEEEEc-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCe
Confidence 1 12578999999999999975 3589999999999999999972 3 379999999999887766799999999
Q ss_pred EEEcc
Q 028867 194 LNFFS 198 (202)
Q Consensus 194 ~~~~~ 198 (202)
++..+
T Consensus 229 ~v~i~ 233 (504)
T 1ecf_A 229 AIYIT 233 (504)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98664
No 5
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.95 E-value=7.5e-28 Score=220.46 Aligned_cols=121 Identities=18% Similarity=0.195 Sum_probs=107.0
Q ss_pred CCCceeecC----CcEEEEEEeEEccHHHHHHHcCC-CCCCCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEEC
Q 028867 68 KDRRLFCGF----EDIYCLFMGSLNNLCSLIRQYGL-SKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDS 142 (202)
Q Consensus 68 ~~QP~~~~~----~~~~lv~nG~I~N~~eL~~~lg~-~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~ 142 (202)
.+||+++.. ++++++|||+|||+.+|+++|+. +.+.||+|+|+++|++ +| .+++++|+|+|||++||.
T Consensus 56 ~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~---~g----~~~~~~l~G~fA~~i~d~ 128 (513)
T 1jgt_A 56 VAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER---YD----LHAFRLVNGRFATVVRTG 128 (513)
T ss_dssp SCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH---HG----GGGGGTCCEEEEEEEEET
T ss_pred cCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH---Hh----HHhHhhcCeeEEEEEEEC
Confidence 479997654 78999999999999999999963 8899999999999996 46 589999999999999998
Q ss_pred CCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhc---------------ccceEEeCCCcEEEcc
Q 028867 143 KAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGC---------------AKSFAPFPQGKLNFFS 198 (202)
Q Consensus 143 ~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~---------------~~~~~~~ppG~~~~~~ 198 (202)
. +|+++||++|+|||||+.. ++.++||||+++|...+ .+.+..+||||++..+
T Consensus 129 ~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~ 196 (513)
T 1jgt_A 129 D--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDID 196 (513)
T ss_dssp T--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEE
T ss_pred C--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEE
Confidence 4 4999999999999999987 67899999999998766 2579999999998764
No 6
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.94 E-value=6.6e-26 Score=211.13 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=116.3
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---CC-CCCCCHHHHHHHHHHHhHhcCCc---hHHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---GL-SKGTDEAMFVIEAYRTLRDRGPY---PADQ 126 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~-~~~~~D~e~i~~~y~~~~~~G~~---~~~~ 126 (202)
+|.++++.+.+. .++||+.+ ++++++|||+|+|+.+||++| |. |.+.||+|+|+++|..+.++|.. .+.+
T Consensus 70 gH~R~at~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~ 147 (608)
T 2bpl_A 70 AHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLR 147 (608)
T ss_dssp EEEECCCSSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EEEccCCCCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 456666655433 67999977 789999999999999999998 54 89999999999999976444643 2368
Q ss_pred HhhhccCcEEEEEEECCC-CEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceEEeCCCcEEEcc
Q 028867 127 VVKDLDGSFAFVVYDSKA-GTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~-~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~ 198 (202)
++++|+|+|||++||... ++|+++||+ |||||+.. ++.++||||.++|...+. .+.+++||+++..+
T Consensus 148 ~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~-~~~~l~~G~i~~i~ 215 (608)
T 2bpl_A 148 AIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIAEIT 215 (608)
T ss_dssp HGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCC-EEEECCTTCEEEEC
T ss_pred HHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCC-eEEEECCCeEEEEE
Confidence 999999999999999987 899999997 99999997 567999999999988775 69999999999765
No 7
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.92 E-value=8.7e-26 Score=206.31 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=111.5
Q ss_pred ccccceeEEEEeCCCCCCCCCCceeecCCcEEEEEEeEEccHH---HHHHHcC-CCCCCCHHHHHHHHHHHhHhcCCchH
Q 028867 49 MNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLC---SLIRQYG-LSKGTDEAMFVIEAYRTLRDRGPYPA 124 (202)
Q Consensus 49 ~~~g~~~~l~~~~~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~---eL~~~lg-~~~~~~D~e~i~~~y~~~~~~G~~~~ 124 (202)
+.+|| .+|++.. . .++||+.+.++.++++ |+|||+. +|+++|. .+.+.||+|+|+++|++ +|
T Consensus 28 ~~igh---~R~~t~~-~-~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~---~g---- 93 (503)
T 1q15_A 28 EALSN---GYLFIEQ-N-GHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR---LG---- 93 (503)
T ss_dssp EEETT---EEEEEET-T-CCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH---HC----
T ss_pred eeEee---eeEEEcC-C-CCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH---HH----
Confidence 44544 4454442 2 6799998877777777 9999999 9999883 57889999999999996 46
Q ss_pred HHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCce-----------------EEEEechhhHhhh------
Q 028867 125 DQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGS-----------------VVISDDLEVIKEG------ 181 (202)
Q Consensus 125 ~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~-----------------~~faSe~~aL~~~------ 181 (202)
.+++++|+|+|||++||..++ |+++|||+|+|||||+.. ++. ++||||.++|...
T Consensus 94 ~~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~ 171 (503)
T 1q15_A 94 ANALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTY 171 (503)
T ss_dssp GGGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTC
T ss_pred HHHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCC
Confidence 589999999999999999888 999999999999999986 556 8999999999765
Q ss_pred --cccceEEeCCCcEEEcc
Q 028867 182 --CAKSFAPFPQGKLNFFS 198 (202)
Q Consensus 182 --~~~~~~~~ppG~~~~~~ 198 (202)
. +.++.+||||++..+
T Consensus 172 T~~-~~v~~l~pG~~~~i~ 189 (503)
T 1q15_A 172 TPV-KNAQRLKPGAVHVLT 189 (503)
T ss_dssp CSB-TTEEECCSSEEEEEE
T ss_pred ccc-CCeEEECCCeEEEEe
Confidence 4 469999999998653
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.90 E-value=1e-23 Score=179.28 Aligned_cols=138 Identities=9% Similarity=0.054 Sum_probs=100.1
Q ss_pred eEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc---C---CC---CCCCHHHHHHHHHHHhHhcCC--c
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY---G---LS---KGTDEAMFVIEAYRTLRDRGP--Y 122 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g---~~---~~~~D~e~i~~~y~~~~~~G~--~ 122 (202)
+|+++++.+... .++|||.. ++++++|||+|+|+.+||++| | .| .+.||+|+|+++|..+...+. .
T Consensus 86 gHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~~~~~ 163 (274)
T 3mdn_A 86 SHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHG 163 (274)
T ss_dssp EEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTTCHHH
T ss_pred EEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcCCHHH
Confidence 556666654332 68999876 789999999999999999887 3 13 689999999999964321111 0
Q ss_pred hHHHHhhhccCc-----------EEEEEEECCCCEEEEEEcC-CCCceEEEEEECC--ceEEEEechhhHhhhcccceEE
Q 028867 123 PADQVVKDLDGS-----------FAFVVYDSKAGTVFTALGS-DGGVKLYWGIAAD--GSVVISDDLEVIKEGCAKSFAP 188 (202)
Q Consensus 123 ~~~~~l~~L~G~-----------Fafvi~D~~~~~l~~aRD~-~G~rPLyyg~~~d--g~~~faSe~~aL~~~~~~~~~~ 188 (202)
.+.+++++|+|. |+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |...+. .+++
T Consensus 164 al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~-~~~~ 238 (274)
T 3mdn_A 164 ALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEG-DWTE 238 (274)
T ss_dssp HHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCS-CCEE
T ss_pred HHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCc-eEEE
Confidence 136899999998 99999975 789999998 9999987777643 689999999 544444 5999
Q ss_pred eCCCcEEEccc
Q 028867 189 FPQGKLNFFSH 199 (202)
Q Consensus 189 ~ppG~~~~~~~ 199 (202)
||||+++..+.
T Consensus 239 v~pGeiv~i~~ 249 (274)
T 3mdn_A 239 LRPGRMLTIGA 249 (274)
T ss_dssp CCSSEEEEEET
T ss_pred ECcCEEEEEeC
Confidence 99999997653
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.81 E-value=1.9e-20 Score=157.70 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=106.4
Q ss_pred eEEEEeCCCCCC-CCCCceeec--CCcEEEEEEeEEccHHHHHHHcCCCCCCCHHHHHHHHHHHhHhc--C--C--chHH
Q 028867 55 AVLAYVPPHSPL-TKDRRLFCG--FEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDR--G--P--YPAD 125 (202)
Q Consensus 55 ~~l~~~~~~~~~-~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~lg~~~~~~D~e~i~~~y~~~~~~--G--~--~~~~ 125 (202)
+|++|++.+.+. .++|||... .++++++|||+|.|+++ |++++.+.++||+|+|++++....+. + + ..+.
T Consensus 76 gHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~a~~ 154 (257)
T 1te5_A 76 GHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLL 154 (257)
T ss_dssp EEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred EEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 789999887554 789999764 46799999999999998 76655589999999999999754321 1 1 1234
Q ss_pred HHhhhcc------CcEEEEEEECCCCEEEEEEc----------CCCCceEEE-------EE---ECCceEEEEechhhHh
Q 028867 126 QVVKDLD------GSFAFVVYDSKAGTVFTALG----------SDGGVKLYW-------GI---AADGSVVISDDLEVIK 179 (202)
Q Consensus 126 ~~l~~L~------G~Fafvi~D~~~~~l~~aRD----------~~G~rPLyy-------g~---~~dg~~~faSe~~aL~ 179 (202)
+++++|. |.|+|++.|. ++|+++|| |+|+|||+. +. ..+..++||||. |.
T Consensus 155 ~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~--l~ 230 (257)
T 1te5_A 155 PVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LT 230 (257)
T ss_dssp HHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SS
T ss_pred HHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc--cC
Confidence 5555554 9999999975 78999999 999999975 31 113468999995 54
Q ss_pred hhcccceEEeCCCcEEEcccc
Q 028867 180 EGCAKSFAPFPQGKLNFFSHY 200 (202)
Q Consensus 180 ~~~~~~~~~~ppG~~~~~~~~ 200 (202)
. ++.++++||||++..+++
T Consensus 231 ~--~~~wr~v~pGe~v~i~~~ 249 (257)
T 1te5_A 231 D--NENWTLQQSGEWVLWWGG 249 (257)
T ss_dssp S--SSSCEEECTTCEEEEETT
T ss_pred C--CCCeeEeCCCEEEEEECC
Confidence 2 457999999999987653
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.76 E-value=3.3e-18 Score=169.74 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=119.5
Q ss_pred CCCcchHHHHhccCCCCCccc--ccccceeEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHHHHc-------
Q 028867 28 PKLPEDTLSDFLSRHSDNTFS--MNFGHAAVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLIRQY------- 97 (202)
Q Consensus 28 ~~~~~~l~~~f~~~~~~~~~~--~~~g~~~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l------- 97 (202)
-..+.++.+.|..... +++. +.+ +|.+|+|...+. .++|||. +++|||||.|+..+|+.+
T Consensus 182 mgl~~~v~~~y~dL~d-~~~~g~~ai---gH~RySTnt~p~w~~AQPf~------~laHNGeInn~~~nr~~m~are~~~ 251 (1479)
T 1ea0_A 182 MFLAEQLTTFYPDLLD-ERFESDFAI---YHQRYSTNTFPTWPLAQPFR------MLAHNGEINTVKGNVNWMKAHETRM 251 (1479)
T ss_dssp SSCGGGHHHHCGGGGS-TTCCBSEEE---EEECCCSCSCCCSTTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGC
T ss_pred CcCHHHhhhhhhhhcc-cccceeEEE---eeecccCCCCCCcccCCccE------EEEECChhhCHHHHHHHHHHhHhhh
Confidence 4556666666544321 2222 344 789999987654 7899973 289999999998888542
Q ss_pred ------------C-C-CCCCCHHHHHHHHHHHhHhcCCchH----------------------------HHHhhhccCcE
Q 028867 98 ------------G-L-SKGTDEAMFVIEAYRTLRDRGPYPA----------------------------DQVVKDLDGSF 135 (202)
Q Consensus 98 ------------g-~-~~~~~D~e~i~~~y~~~~~~G~~~~----------------------------~~~l~~L~G~F 135 (202)
+ + +.+.||+|++.++++.+...|.... ..+++.++|+|
T Consensus 252 ~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~ 331 (1479)
T 1ea0_A 252 EHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPA 331 (1479)
T ss_dssp CCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSE
T ss_pred cCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcE
Confidence 2 3 7899999999666654322332110 23468999999
Q ss_pred EEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceE--EeCCCcEEEcc
Q 028867 136 AFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFA--PFPQGKLNFFS 198 (202)
Q Consensus 136 afvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~--~~ppG~~~~~~ 198 (202)
|+++.|. +.++++|||+|.|||.|+.++|+.+++|||.++|.-.+++.++ .+.||+++..+
T Consensus 332 slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 332 ALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp EEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEEE
T ss_pred EEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 9999875 8999999999999999999988889999999999777776667 99999999765
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.74 E-value=1.2e-17 Score=166.09 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=117.8
Q ss_pred CCCcchHHHHhccCCCCCccc--ccccceeEEEEeCCCCCC-CCCCceeecCCcEEEEEEeEEccHHHHH------HH--
Q 028867 28 PKLPEDTLSDFLSRHSDNTFS--MNFGHAAVLAYVPPHSPL-TKDRRLFCGFEDIYCLFMGSLNNLCSLI------RQ-- 96 (202)
Q Consensus 28 ~~~~~~l~~~f~~~~~~~~~~--~~~g~~~~l~~~~~~~~~-~~~QP~~~~~~~~~lv~nG~I~N~~eL~------~~-- 96 (202)
-..+.++.+.|..... +++. +.+ +|.+|+|...+. .++|||. +++|||||.|...+| +.
T Consensus 178 mgl~~~v~~~y~dL~~-~~~~g~~ai---gH~RySTnt~p~w~~AQPf~------~LaHNGeInt~~~nrnwm~aR~~~~ 247 (1520)
T 1ofd_A 178 MVRSIILGEFYLDLKN-PGYTSNFAV---YHRRFSTNTMPKWPLAQPMR------LLGHNGEINTLLGNINWMAAREKEL 247 (1520)
T ss_dssp SSCHHHHHHHBHHHHC-TTCCBSEEE---EEECCCSSSCCCGGGSSCCS------SEEEEECCTTHHHHHHHHHHHGGGC
T ss_pred CccHHHHhhhhhhccc-cccceeEEE---EEccccCCCCCCcccCCchh------eeEecchhhcHHHHHHHHHHHHHHh
Confidence 3455556555543321 2222 344 788999987664 7899973 389999999887777 21
Q ss_pred ----c--------C--CCCCCCHHHHHHHHHHHhHhcCCchH------------------------------HHHhhhcc
Q 028867 97 ----Y--------G--LSKGTDEAMFVIEAYRTLRDRGPYPA------------------------------DQVVKDLD 132 (202)
Q Consensus 97 ----l--------g--~~~~~~D~e~i~~~y~~~~~~G~~~~------------------------------~~~l~~L~ 132 (202)
+ + ++.+.||+|++.++++.+...|.... ..+++.++
T Consensus 248 ~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~d 327 (1520)
T 1ofd_A 248 EVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWD 327 (1520)
T ss_dssp CCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCC
T ss_pred cCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCC
Confidence 1 3 37899999999877664322332110 12257899
Q ss_pred CcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccceE--EeCCCcEEEcc
Q 028867 133 GSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFA--PFPQGKLNFFS 198 (202)
Q Consensus 133 G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~~--~~ppG~~~~~~ 198 (202)
|+||+++.|. +.++++|||+|.|||.|+.++|+.+++|||.++|.-.+++.++ .+.||+++..+
T Consensus 328 Gpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 328 GPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp SSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEEEEE
T ss_pred CCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 9999999976 8999999999999999999977789999999999777776777 99999999765
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=50.88 E-value=3 Score=31.66 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=21.1
Q ss_pred cCcEEEEEEECCCCEEEEEEcCCCCceEE
Q 028867 132 DGSFAFVVYDSKAGTVFTALGSDGGVKLY 160 (202)
Q Consensus 132 ~G~Fafvi~D~~~~~l~~aRD~~G~rPLy 160 (202)
+|.||+|+.+ .+.++-..++ |++|||
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~ 52 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVV 52 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHH
Confidence 5789999953 4678888776 999998
No 13
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=30.89 E-value=1.7e+02 Score=23.33 Aligned_cols=39 Identities=8% Similarity=0.318 Sum_probs=27.0
Q ss_pred HhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCce
Q 028867 127 VVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGS 168 (202)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~ 168 (202)
-+..+.+..+-+-||...++||++.|. .+-.|..+.++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~---~~~I~~ld~~g~ 59 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINK---PAAIVEMTTNGD 59 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEET---TEEEEEEETTCC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECC---CCeEEEEeCCCC
Confidence 455666678989999888999999986 333444444443
No 14
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=29.66 E-value=79 Score=17.89 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=12.8
Q ss_pred ccCcEEEEEEECCCCE-EEEEE
Q 028867 131 LDGSFAFVVYDSKAGT-VFTAL 151 (202)
Q Consensus 131 L~G~Fafvi~D~~~~~-l~~aR 151 (202)
.+=.|-|+|+|..++. ||++|
T Consensus 12 ~drPFlf~I~~~~t~~iLF~G~ 33 (40)
T 2riv_B 12 IDRSFMLLILERSTRSILFLGK 33 (40)
T ss_dssp CCBCEEEEEEETTTTEEEEEEE
T ss_pred ecCCEEEEEEeCCCCcEEEEEE
Confidence 4567777777766553 34443
No 15
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=28.05 E-value=79 Score=17.27 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=9.4
Q ss_pred cCcEEEEEEECCCCE
Q 028867 132 DGSFAFVVYDSKAGT 146 (202)
Q Consensus 132 ~G~Fafvi~D~~~~~ 146 (202)
+=.|-|+|+|..++.
T Consensus 8 drPFlf~I~~~~t~~ 22 (35)
T 2xn6_B 8 DRSFMLLILERSTRS 22 (35)
T ss_dssp CBCEEEEEEETTTTE
T ss_pred cCCEEEEEEECCCCc
Confidence 446777777765553
No 16
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=27.62 E-value=83 Score=17.34 Aligned_cols=21 Identities=14% Similarity=0.502 Sum_probs=11.7
Q ss_pred ccCcEEEEEEECCCCE-EEEEE
Q 028867 131 LDGSFAFVVYDSKAGT-VFTAL 151 (202)
Q Consensus 131 L~G~Fafvi~D~~~~~-l~~aR 151 (202)
++=.|-|+|+|..++. ||++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 3ndd_B 8 FNKPFVFLMIEQNTKSPLFMGK 29 (36)
T ss_dssp CCSCEEEEEEETTTCCEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 3556777777765442 34443
No 17
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=27.42 E-value=83 Score=17.32 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=12.5
Q ss_pred ccCcEEEEEEECCCCE-EEEEE
Q 028867 131 LDGSFAFVVYDSKAGT-VFTAL 151 (202)
Q Consensus 131 L~G~Fafvi~D~~~~~-l~~aR 151 (202)
.+-.|-|+|+|..++. ||++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 4afx_B 8 IDRPFHFMIYEETSGMLLFLGR 29 (36)
T ss_dssp CCSCEEEEEEETTTTEEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 4556777777766554 34443
No 18
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=25.73 E-value=81 Score=16.63 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=9.2
Q ss_pred cCcEEEEEEECCCCE
Q 028867 132 DGSFAFVVYDSKAGT 146 (202)
Q Consensus 132 ~G~Fafvi~D~~~~~ 146 (202)
+=.|-|+|+|..++.
T Consensus 7 drPFlf~I~~~~t~~ 21 (31)
T 1hle_B 7 DHPFIFFIRHNPSAN 21 (31)
T ss_dssp CSCEEEEEEETTTTE
T ss_pred eCCEEEEEEECCCCc
Confidence 446777777765553
No 19
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=24.85 E-value=90 Score=16.84 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=8.8
Q ss_pred cCcEEEEEEECCCCE
Q 028867 132 DGSFAFVVYDSKAGT 146 (202)
Q Consensus 132 ~G~Fafvi~D~~~~~ 146 (202)
+=.|-|+|+|..++.
T Consensus 8 drPFlf~I~~~~t~~ 22 (34)
T 2h4p_B 8 DHPFHFFIRHNKSKT 22 (34)
T ss_dssp CSCEEEEEEETTTTE
T ss_pred cCCEEEEEEECCCCe
Confidence 445666777665543
No 20
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=21.17 E-value=78 Score=20.82 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.8
Q ss_pred CCEEEEEEcCCCCceEEEEE
Q 028867 144 AGTVFTALGSDGGVKLYWGI 163 (202)
Q Consensus 144 ~~~l~~aRD~~G~rPLyyg~ 163 (202)
++-+|++.|.-|+|.-|||.
T Consensus 55 ~~lIfvG~DSKgrkQYFYGk 74 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQYFYGK 74 (77)
T ss_dssp TSEEEEEECTTSCEEEEECT
T ss_pred CceEEEeecCCCceeeeecc
Confidence 35689999999999988874
Done!