Query 028869
Match_columns 202
No_of_seqs 126 out of 1173
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 1.9E-48 4.1E-53 319.5 18.0 180 14-201 6-188 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 5.7E-48 1.2E-52 316.2 17.2 167 12-201 3-170 (280)
3 COG0667 Tas Predicted oxidored 100.0 9.1E-41 2E-45 281.4 18.4 167 12-201 1-184 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 2.7E-39 5.8E-44 269.9 18.6 173 8-201 8-194 (336)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.3E-39 7.2E-44 266.5 18.8 158 22-201 1-159 (267)
6 TIGR01293 Kv_beta voltage-depe 100.0 3.2E-39 7E-44 272.6 17.8 166 14-200 1-182 (317)
7 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.4E-39 1.8E-43 265.2 18.9 163 13-201 5-167 (275)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 1.3E-38 2.7E-43 271.9 20.3 171 10-200 11-199 (346)
9 PRK10625 tas putative aldo-ket 100.0 2.4E-38 5.1E-43 270.2 18.1 182 12-200 1-211 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 4.5E-38 9.8E-43 261.2 18.9 167 14-201 1-177 (285)
11 PLN02587 L-galactose dehydroge 100.0 3.2E-37 7E-42 260.1 18.2 168 14-199 1-182 (314)
12 PRK10376 putative oxidoreducta 100.0 3.1E-35 6.8E-40 245.5 18.3 163 14-200 9-191 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 8.6E-36 1.9E-40 247.2 14.6 155 26-200 1-165 (283)
14 PRK14863 bifunctional regulato 100.0 2E-35 4.3E-40 246.8 14.1 154 22-201 3-169 (292)
15 COG4989 Predicted oxidoreducta 100.0 1.3E-35 2.9E-40 235.7 10.4 169 12-201 1-186 (298)
16 KOG1576 Predicted oxidoreducta 100.0 9E-31 2E-35 209.9 12.0 159 10-187 20-193 (342)
17 COG1453 Predicted oxidoreducta 100.0 6.8E-30 1.5E-34 212.9 12.1 166 12-198 1-176 (391)
18 KOG3023 Glutamate-cysteine lig 98.5 5.8E-07 1.3E-11 72.0 7.2 117 84-200 73-205 (285)
19 COG0635 HemN Coproporphyrinoge 82.4 15 0.00034 32.4 9.8 78 95-176 197-276 (416)
20 PRK13796 GTPase YqeH; Provisio 81.7 34 0.00073 29.6 12.5 122 37-183 54-180 (365)
21 PRK09058 coproporphyrinogen II 78.1 50 0.0011 29.4 11.8 125 43-177 163-305 (449)
22 COG1748 LYS9 Saccharopine dehy 75.8 21 0.00046 31.3 8.5 82 38-131 77-159 (389)
23 PRK00164 moaA molybdenum cofac 74.4 52 0.0011 27.7 15.1 142 37-199 49-197 (331)
24 TIGR03822 AblA_like_2 lysine-2 74.0 54 0.0012 27.8 12.1 124 38-185 120-253 (321)
25 PRK05283 deoxyribose-phosphate 71.4 33 0.00072 28.3 8.2 76 38-121 144-227 (257)
26 COG4152 ABC-type uncharacteriz 70.5 41 0.00089 28.0 8.4 39 146-186 162-200 (300)
27 TIGR01228 hutU urocanate hydra 70.3 17 0.00037 32.8 6.6 131 44-200 107-261 (545)
28 PRK05414 urocanate hydratase; 69.3 19 0.00042 32.6 6.8 130 44-199 116-269 (556)
29 PRK13361 molybdenum cofactor b 67.4 77 0.0017 26.8 15.2 142 37-199 45-193 (329)
30 PHA02820 phospholipase-D-like 66.1 79 0.0017 28.0 10.1 63 85-164 231-301 (424)
31 TIGR00126 deoC deoxyribose-pho 65.7 50 0.0011 26.3 8.0 74 37-119 129-205 (211)
32 COG3623 SgaU Putative L-xylulo 64.0 13 0.00028 30.4 4.3 42 20-61 66-117 (287)
33 cd04728 ThiG Thiazole synthase 64.0 81 0.0018 25.9 12.4 71 99-185 73-143 (248)
34 PRK08195 4-hyroxy-2-oxovalerat 63.9 94 0.002 26.6 11.3 24 37-60 22-45 (337)
35 PF03102 NeuB: NeuB family; I 63.5 54 0.0012 26.8 7.9 122 37-185 53-191 (241)
36 PRK13958 N-(5'-phosphoribosyl) 61.2 59 0.0013 25.7 7.7 64 112-196 17-82 (207)
37 TIGR03597 GTPase_YqeH ribosome 60.8 1E+02 0.0023 26.5 9.7 83 84-183 90-174 (360)
38 PF01175 Urocanase: Urocanase; 59.9 23 0.0005 32.1 5.5 132 43-200 105-260 (546)
39 cd00405 PRAI Phosphoribosylant 59.6 82 0.0018 24.5 9.7 45 112-179 69-113 (203)
40 TIGR03820 lys_2_3_AblA lysine- 59.1 1.3E+02 0.0028 26.7 11.7 124 37-185 138-271 (417)
41 PRK06294 coproporphyrinogen II 56.9 1.3E+02 0.0028 26.0 11.7 125 43-177 103-244 (370)
42 PLN02363 phosphoribosylanthran 56.4 70 0.0015 26.3 7.5 64 113-196 64-129 (256)
43 TIGR02666 moaA molybdenum cofa 55.4 1.3E+02 0.0028 25.4 14.6 142 37-199 43-192 (334)
44 TIGR01278 DPOR_BchB light-inde 55.3 1.5E+02 0.0033 26.9 10.2 108 63-190 67-191 (511)
45 PRK05628 coproporphyrinogen II 54.6 1.4E+02 0.0031 25.7 12.5 125 44-177 109-249 (375)
46 PRK08446 coproporphyrinogen II 53.0 1.5E+02 0.0032 25.4 10.6 121 43-176 98-231 (350)
47 PF05049 IIGP: Interferon-indu 52.6 34 0.00074 29.9 5.3 59 65-130 129-201 (376)
48 cd07940 DRE_TIM_IPMS 2-isoprop 51.8 1.3E+02 0.0029 24.6 8.6 49 27-75 130-180 (268)
49 PRK00208 thiG thiazole synthas 50.1 1.4E+02 0.0031 24.5 14.0 129 24-185 10-143 (250)
50 PRK02399 hypothetical protein; 49.8 63 0.0014 28.5 6.5 59 106-186 199-271 (406)
51 TIGR03821 AblA_like_1 lysine-2 49.8 1.6E+02 0.0035 25.0 11.3 126 38-186 126-260 (321)
52 COG2089 SpsE Sialic acid synth 49.4 1.7E+02 0.0037 25.2 11.5 123 37-186 87-226 (347)
53 PRK01222 N-(5'-phosphoribosyl) 49.2 75 0.0016 25.2 6.5 64 112-196 19-84 (210)
54 cd00959 DeoC 2-deoxyribose-5-p 49.1 74 0.0016 24.9 6.4 71 38-117 129-202 (203)
55 PRK03995 hypothetical protein; 48.8 1.4E+02 0.003 24.9 8.1 81 22-119 180-264 (267)
56 KOG0059 Lipid exporter ABCA1 a 47.9 1E+02 0.0022 30.1 8.2 53 119-186 716-768 (885)
57 KOG0259 Tyrosine aminotransfer 47.0 1.5E+02 0.0032 26.3 8.1 132 37-187 78-229 (447)
58 cd08319 Death_RAIDD Death doma 46.4 24 0.00052 23.8 2.7 70 104-195 12-81 (83)
59 PRK00507 deoxyribose-phosphate 46.3 98 0.0021 24.9 6.7 72 37-118 133-208 (221)
60 PLN02321 2-isopropylmalate syn 46.0 2.6E+02 0.0057 26.3 10.4 69 26-96 226-296 (632)
61 PLN02775 Probable dihydrodipic 45.9 1.4E+02 0.003 25.1 7.7 61 108-188 68-128 (286)
62 COG2987 HutU Urocanate hydrata 45.4 60 0.0013 29.2 5.6 109 65-199 149-269 (561)
63 PF01118 Semialdhyde_dh: Semia 45.3 37 0.0008 24.1 3.8 28 37-64 74-101 (121)
64 PRK03031 rnpA ribonuclease P; 45.3 1.1E+02 0.0025 21.9 6.8 65 84-163 47-114 (122)
65 cd07945 DRE_TIM_CMS Leptospira 45.2 1.8E+02 0.0039 24.2 8.7 39 37-75 144-184 (280)
66 COG1121 ZnuC ABC-type Mn/Zn tr 45.0 90 0.002 25.8 6.4 52 118-184 156-207 (254)
67 TIGR00221 nagA N-acetylglucosa 44.9 2.1E+02 0.0046 24.9 11.7 125 37-186 74-212 (380)
68 PF06792 UPF0261: Uncharacteri 44.4 89 0.0019 27.6 6.6 58 107-186 199-270 (403)
69 TIGR00035 asp_race aspartate r 44.0 1.4E+02 0.003 23.8 7.4 83 101-188 16-99 (229)
70 COG1751 Uncharacterized conser 43.4 87 0.0019 24.0 5.5 71 39-118 13-85 (186)
71 TIGR00973 leuA_bact 2-isopropy 43.3 2.6E+02 0.0055 25.4 10.2 68 27-96 133-202 (494)
72 PRK05660 HemN family oxidoredu 42.7 2.2E+02 0.0049 24.6 10.6 122 44-178 108-245 (378)
73 KOG0149 Predicted RNA-binding 42.6 50 0.0011 26.9 4.4 78 91-202 12-90 (247)
74 COG2390 DeoR Transcriptional r 41.8 2.2E+02 0.0048 24.3 10.1 117 43-186 16-133 (321)
75 PRK13015 3-dehydroquinate dehy 41.3 1.5E+02 0.0033 22.3 7.0 77 98-199 25-103 (146)
76 TIGR00355 purH phosphoribosyla 41.1 1E+02 0.0022 28.1 6.6 76 38-127 9-99 (511)
77 PRK09413 IS2 repressor TnpA; R 40.2 24 0.00052 25.3 2.2 40 37-76 13-53 (121)
78 smart00148 PLCXc Phospholipase 39.2 1.5E+02 0.0033 21.6 6.7 19 43-61 31-49 (135)
79 COG1210 GalU UDP-glucose pyrop 39.0 34 0.00074 28.6 3.1 36 22-57 7-53 (291)
80 PF01487 DHquinase_I: Type I 3 38.9 1.9E+02 0.0042 22.8 10.4 82 37-126 72-153 (224)
81 COG5310 Homospermidine synthas 38.7 95 0.0021 26.9 5.7 93 23-130 15-124 (481)
82 PF04414 tRNA_deacylase: D-ami 38.6 76 0.0017 25.4 4.9 77 23-118 130-210 (213)
83 PRK14866 hypothetical protein; 38.6 3E+02 0.0065 24.8 9.6 81 23-122 185-270 (451)
84 PF01113 DapB_N: Dihydrodipico 38.5 86 0.0019 22.4 4.9 44 150-193 77-120 (124)
85 COG3457 Predicted amino acid r 38.2 1.6E+02 0.0035 25.3 6.9 122 40-175 15-165 (353)
86 COG0646 MetH Methionine syntha 37.9 2.3E+02 0.005 24.1 7.8 39 147-185 269-308 (311)
87 PF02679 ComA: (2R)-phospho-3- 37.3 2.2E+02 0.0049 23.3 7.5 79 39-128 83-169 (244)
88 PF01527 HTH_Tnp_1: Transposas 37.3 10 0.00022 24.4 -0.2 41 37-77 7-48 (76)
89 TIGR02660 nifV_homocitr homoci 37.1 2.7E+02 0.0059 24.0 8.7 21 37-57 139-159 (365)
90 PRK13347 coproporphyrinogen II 36.7 3.1E+02 0.0066 24.4 11.8 76 95-177 212-292 (453)
91 cd00466 DHQase_II Dehydroquina 35.8 1.9E+02 0.004 21.7 6.4 76 98-198 23-100 (140)
92 PRK05294 carB carbamoyl phosph 35.6 23 0.00051 35.2 1.9 32 166-197 488-527 (1066)
93 PRK09249 coproporphyrinogen II 35.1 3.2E+02 0.007 24.2 11.6 125 44-177 152-291 (453)
94 PRK11840 bifunctional sulfur c 34.2 3E+02 0.0066 23.6 12.2 136 14-185 74-217 (326)
95 TIGR02668 moaA_archaeal probab 34.0 2.7E+02 0.0058 23.0 12.7 141 37-199 40-187 (302)
96 PRK07379 coproporphyrinogen II 34.0 3.2E+02 0.007 23.8 12.9 125 44-177 116-256 (400)
97 COG0135 TrpF Phosphoribosylant 33.7 2.5E+02 0.0053 22.4 7.2 60 113-195 19-81 (208)
98 PF07021 MetW: Methionine bios 33.2 2.3E+02 0.0049 22.4 6.7 107 44-184 5-122 (193)
99 TIGR01088 aroQ 3-dehydroquinat 32.8 2.1E+02 0.0046 21.4 6.5 77 98-199 23-101 (141)
100 COG0135 TrpF Phosphoribosylant 32.4 2.2E+02 0.0047 22.7 6.6 101 38-176 11-112 (208)
101 PRK00499 rnpA ribonuclease P; 32.3 1.8E+02 0.0039 20.5 6.8 64 84-163 38-104 (114)
102 PRK00730 rnpA ribonuclease P; 31.9 2.2E+02 0.0047 21.2 6.7 63 84-163 46-110 (138)
103 PRK00915 2-isopropylmalate syn 31.6 4E+02 0.0087 24.2 10.3 47 28-74 137-185 (513)
104 cd07943 DRE_TIM_HOA 4-hydroxy- 31.5 2.8E+02 0.0062 22.5 10.7 24 37-60 19-42 (263)
105 cd00668 Ile_Leu_Val_MetRS_core 31.4 72 0.0016 26.7 4.0 47 102-168 82-131 (312)
106 PRK10799 metal-binding protein 31.2 1.2E+02 0.0027 24.6 5.2 29 46-75 200-228 (247)
107 PF12728 HTH_17: Helix-turn-he 31.2 1.1E+02 0.0024 17.7 4.1 31 155-185 16-49 (51)
108 cd03770 SR_TndX_transposase Se 31.0 92 0.002 22.7 4.1 44 105-163 54-97 (140)
109 TIGR03217 4OH_2_O_val_ald 4-hy 31.0 3.4E+02 0.0073 23.2 11.3 24 37-60 21-44 (333)
110 cd01973 Nitrogenase_VFe_beta_l 30.8 3.9E+02 0.0085 23.9 10.7 116 60-191 65-192 (454)
111 cd01421 IMPCH Inosine monophos 30.6 1.9E+02 0.0042 22.7 5.9 72 39-127 10-99 (187)
112 COG1242 Predicted Fe-S oxidore 30.3 2E+02 0.0043 24.3 6.2 60 87-171 181-242 (312)
113 PRK05395 3-dehydroquinate dehy 30.2 2.4E+02 0.0052 21.2 6.1 77 98-199 25-103 (146)
114 PRK04390 rnpA ribonuclease P; 30.2 2.1E+02 0.0045 20.5 6.8 65 84-163 44-110 (120)
115 PRK10550 tRNA-dihydrouridine s 30.1 3.4E+02 0.0074 22.9 13.4 130 37-187 72-217 (312)
116 TIGR00126 deoC deoxyribose-pho 29.8 2.9E+02 0.0062 22.0 9.9 120 37-185 15-140 (211)
117 PF04748 Polysacc_deac_2: Dive 29.3 2.9E+02 0.0063 21.9 8.5 84 37-126 71-182 (213)
118 PF01784 NIF3: NIF3 (NGG1p int 29.3 41 0.00089 27.2 2.1 57 19-76 165-234 (241)
119 cd05006 SIS_GmhA Phosphoheptos 29.3 76 0.0017 24.0 3.5 34 150-184 114-147 (177)
120 COG1131 CcmA ABC-type multidru 29.2 1.1E+02 0.0024 25.5 4.7 65 104-184 141-205 (293)
121 PRK08599 coproporphyrinogen II 29.0 3.7E+02 0.0081 23.1 12.5 78 95-177 160-241 (377)
122 PRK11858 aksA trans-homoaconit 28.9 3.9E+02 0.0084 23.2 8.3 11 149-159 232-242 (378)
123 PRK04820 rnpA ribonuclease P; 28.6 2.5E+02 0.0055 21.0 6.9 65 84-163 48-114 (145)
124 PF01220 DHquinase_II: Dehydro 28.4 1.5E+02 0.0032 22.2 4.7 76 99-199 25-102 (140)
125 PRK13936 phosphoheptose isomer 28.3 83 0.0018 24.5 3.6 36 151-187 125-160 (197)
126 PF15221 LEP503: Lens epitheli 28.2 38 0.00081 21.0 1.2 26 8-33 11-36 (61)
127 PF00388 PI-PLC-X: Phosphatidy 28.1 49 0.0011 24.3 2.2 20 43-62 29-48 (146)
128 COG0279 GmhA Phosphoheptose is 27.9 2.9E+02 0.0063 21.4 8.4 118 40-186 28-157 (176)
129 PRK10076 pyruvate formate lyas 27.7 3.1E+02 0.0068 21.7 12.6 85 37-128 51-170 (213)
130 COG0677 WecC UDP-N-acetyl-D-ma 27.5 2.1E+02 0.0045 25.5 6.1 99 84-185 119-219 (436)
131 cd01967 Nitrogenase_MoFe_alpha 27.1 4.1E+02 0.0089 22.9 11.2 111 62-190 68-189 (406)
132 cd00423 Pterin_binding Pterin 27.1 3.4E+02 0.0074 22.0 9.2 82 100-195 22-103 (258)
133 cd04740 DHOD_1B_like Dihydroor 27.0 3.6E+02 0.0077 22.2 14.0 139 37-186 99-253 (296)
134 PRK05301 pyrroloquinoline quin 26.8 4.1E+02 0.0088 22.8 8.5 128 37-186 46-178 (378)
135 cd00885 cinA Competence-damage 26.6 2.9E+02 0.0063 21.0 6.6 46 42-93 20-66 (170)
136 PRK09427 bifunctional indole-3 26.4 2.4E+02 0.0053 25.3 6.6 29 166-196 307-336 (454)
137 TIGR00538 hemN oxygen-independ 26.2 4.7E+02 0.01 23.2 11.9 123 44-177 152-291 (455)
138 KOG2367 Alpha-isopropylmalate 26.1 3.2E+02 0.0069 25.0 7.0 94 29-128 193-288 (560)
139 PRK09061 D-glutamate deacylase 26.0 5E+02 0.011 23.5 11.9 109 42-175 171-286 (509)
140 cd02801 DUS_like_FMN Dihydrour 25.9 3.2E+02 0.007 21.3 10.4 126 37-186 64-205 (231)
141 KOG0922 DEAH-box RNA helicase 25.9 85 0.0018 29.5 3.6 40 110-168 413-452 (674)
142 CHL00162 thiG thiamin biosynth 25.9 3.2E+02 0.007 22.7 6.6 137 14-185 7-157 (267)
143 TIGR02109 PQQ_syn_pqqE coenzym 25.7 4.1E+02 0.0089 22.5 8.8 130 37-186 37-169 (358)
144 PRK06582 coproporphyrinogen II 25.3 4.6E+02 0.0099 22.9 10.0 75 95-177 170-251 (390)
145 cd04734 OYE_like_3_FMN Old yel 25.2 4.3E+02 0.0094 22.5 14.1 34 154-187 274-308 (343)
146 PRK05692 hydroxymethylglutaryl 25.2 2.8E+02 0.006 23.1 6.4 64 105-185 28-91 (287)
147 PF09012 FeoC: FeoC like trans 25.1 94 0.002 19.7 2.9 26 150-175 28-53 (69)
148 cd03174 DRE_TIM_metallolyase D 25.1 2.6E+02 0.0055 22.3 6.1 70 99-185 16-86 (265)
149 PF00154 RecA: recA bacterial 25.0 1.2E+02 0.0026 26.0 4.2 39 111-169 97-135 (322)
150 TIGR01862 N2-ase-Ialpha nitrog 24.9 4.9E+02 0.011 23.1 9.5 113 61-191 97-221 (443)
151 COG0352 ThiE Thiamine monophos 24.7 3.6E+02 0.0079 21.5 9.4 29 155-185 95-123 (211)
152 TIGR01369 CPSaseII_lrg carbamo 24.6 58 0.0012 32.4 2.5 23 37-59 386-408 (1050)
153 CHL00076 chlB photochlorophyll 24.5 5.4E+02 0.012 23.4 10.3 106 63-190 67-196 (513)
154 cd07939 DRE_TIM_NifV Streptomy 24.5 3.8E+02 0.0083 21.7 9.0 28 37-64 136-163 (259)
155 COG0419 SbcC ATPase involved i 24.4 1.6E+02 0.0036 28.7 5.5 56 107-177 827-884 (908)
156 COG2103 Predicted sugar phosph 24.3 4.3E+02 0.0093 22.2 8.3 64 102-184 112-175 (298)
157 COG0825 AccA Acetyl-CoA carbox 24.0 1.1E+02 0.0023 25.9 3.6 36 40-75 137-179 (317)
158 cd07187 YvcK_like family of mo 23.7 1.4E+02 0.0031 25.3 4.4 72 51-129 175-253 (308)
159 TIGR03569 NeuB_NnaB N-acetylne 23.7 4.7E+02 0.01 22.4 10.6 124 37-185 73-213 (329)
160 PF01978 TrmB: Sugar-specific 23.6 1.5E+02 0.0032 18.5 3.6 22 149-170 35-56 (68)
161 COG0145 HyuA N-methylhydantoin 23.6 6.2E+02 0.013 24.1 8.9 84 37-129 136-242 (674)
162 COG3172 NadR Predicted ATPase/ 23.5 3.4E+02 0.0073 21.2 5.9 91 51-164 78-185 (187)
163 COG1213 Predicted sugar nucleo 23.4 2.4E+02 0.0052 23.1 5.4 46 153-201 34-80 (239)
164 PRK13803 bifunctional phosphor 23.3 4.2E+02 0.009 24.8 7.7 65 113-196 20-86 (610)
165 cd03330 Macro_2 Macro domain, 23.2 58 0.0013 23.5 1.8 27 22-51 107-133 (133)
166 PRK12435 ferrochelatase; Provi 23.1 4.6E+02 0.01 22.1 7.6 68 102-184 197-267 (311)
167 PF11181 YflT: Heat induced st 23.1 1.5E+02 0.0032 20.5 3.8 29 63-93 6-34 (103)
168 PRK15408 autoinducer 2-binding 23.0 4.6E+02 0.01 22.1 9.1 79 84-185 22-100 (336)
169 PF15636 Tox-GHH: GHH signatur 22.8 2.4E+02 0.0052 18.8 4.6 36 150-188 16-51 (79)
170 PRK01492 rnpA ribonuclease P; 22.8 2.9E+02 0.0063 19.7 7.1 62 85-161 47-114 (118)
171 cd00338 Ser_Recombinase Serine 22.7 1.7E+02 0.0036 20.6 4.2 50 105-170 51-100 (137)
172 COG0289 DapB Dihydrodipicolina 22.7 2.2E+02 0.0047 23.7 5.1 48 150-197 79-126 (266)
173 PF14177 YkyB: YkyB-like prote 22.7 78 0.0017 23.5 2.3 18 155-172 31-48 (140)
174 KOG1579 Homocysteine S-methylt 22.7 4.9E+02 0.011 22.3 7.5 143 37-184 50-241 (317)
175 COG1801 Uncharacterized conser 22.7 4.4E+02 0.0096 21.7 10.2 95 26-129 4-113 (263)
176 PF12689 Acid_PPase: Acid Phos 22.6 2.9E+02 0.0062 21.2 5.5 40 150-189 47-86 (169)
177 cd07153 Fur_like Ferric uptake 22.5 1.5E+02 0.0032 20.5 3.8 25 149-173 34-58 (116)
178 KOG0173 20S proteasome, regula 22.4 73 0.0016 26.2 2.3 18 37-54 183-200 (271)
179 PLN02746 hydroxymethylglutaryl 22.3 5.1E+02 0.011 22.4 8.8 47 29-75 186-234 (347)
180 PF13602 ADH_zinc_N_2: Zinc-bi 22.2 74 0.0016 22.2 2.1 36 150-185 80-115 (127)
181 cd00814 MetRS_core catalytic c 22.2 1.3E+02 0.0029 25.2 4.0 46 102-166 69-114 (319)
182 cd06361 PBP1_GPC6A_like Ligand 22.1 5.2E+02 0.011 22.4 8.8 110 37-175 155-270 (403)
183 PRK07094 biotin synthase; Prov 22.1 4.7E+02 0.01 21.8 9.6 126 37-186 70-204 (323)
184 cd01974 Nitrogenase_MoFe_beta 22.0 5.5E+02 0.012 22.6 9.4 116 60-191 64-191 (435)
185 TIGR03586 PseI pseudaminic aci 21.9 5.1E+02 0.011 22.2 10.4 122 37-185 74-212 (327)
186 KOG1196 Predicted NAD-dependen 21.9 86 0.0019 26.8 2.7 20 150-169 291-310 (343)
187 KOG2499 Beta-N-acetylhexosamin 21.8 1E+02 0.0022 28.0 3.2 41 22-62 230-275 (542)
188 PRK02910 light-independent pro 21.7 6.1E+02 0.013 23.0 9.5 107 63-190 67-191 (519)
189 COG1880 CdhB CO dehydrogenase/ 21.5 3.8E+02 0.0083 20.6 9.0 38 24-64 37-74 (170)
190 PRK05692 hydroxymethylglutaryl 21.5 4.8E+02 0.01 21.7 8.5 40 37-76 152-193 (287)
191 TIGR02455 TreS_stutzeri trehal 21.5 3.8E+02 0.0082 25.5 6.9 101 51-167 112-215 (688)
192 COG2896 MoaA Molybdenum cofact 21.4 5.2E+02 0.011 22.1 12.4 133 37-191 43-181 (322)
193 PRK10508 hypothetical protein; 21.3 2.4E+02 0.0051 24.1 5.3 22 99-120 286-307 (333)
194 COG4626 Phage terminase-like p 21.2 2.4E+02 0.0053 26.0 5.6 44 148-191 410-453 (546)
195 COG1448 TyrB Aspartate/tyrosin 21.1 3.2E+02 0.007 24.1 6.0 92 56-167 97-208 (396)
196 PRK12815 carB carbamoyl phosph 21.1 89 0.0019 31.2 3.0 23 175-197 505-527 (1068)
197 cd07943 DRE_TIM_HOA 4-hydroxy- 21.0 1.8E+02 0.0039 23.7 4.5 71 40-116 112-184 (263)
198 COG3215 PilZ Tfp pilus assembl 20.9 2.2E+02 0.0049 20.1 4.1 70 37-114 17-106 (117)
199 PRK10200 putative racemase; Pr 20.8 4.4E+02 0.0096 21.0 7.8 87 101-193 16-103 (230)
200 PRK05799 coproporphyrinogen II 20.8 5.4E+02 0.012 22.0 13.2 125 44-177 100-240 (374)
201 cd01966 Nitrogenase_NifN_1 Nit 20.5 5.9E+02 0.013 22.4 9.5 114 62-191 62-188 (417)
202 cd00419 Ferrochelatase_C Ferro 20.4 3.5E+02 0.0076 19.7 9.7 66 85-165 18-91 (135)
203 cd00818 IleRS_core catalytic c 20.4 1.4E+02 0.003 25.5 3.8 46 103-167 88-135 (338)
204 cd02930 DCR_FMN 2,4-dienoyl-Co 20.3 5.5E+02 0.012 21.9 13.9 37 85-122 202-243 (353)
205 cd07945 DRE_TIM_CMS Leptospira 20.1 5.1E+02 0.011 21.5 8.3 26 37-62 16-42 (280)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.9e-48 Score=319.51 Aligned_cols=180 Identities=45% Similarity=0.737 Sum_probs=163.9
Q ss_pred eeecCCCCCccccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeec
Q 028869 14 DVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK 93 (202)
+++|++| .+||.||||||+ .++.++.+.++.|++.||||||||..|+||+.+|++|++.+.++.+ +|+++||+||
T Consensus 6 ~~~Ln~G-~~mP~iGlGTw~---~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTSK 80 (300)
T KOG1577|consen 6 TVKLNNG-FKMPIIGLGTWQ---SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITSK 80 (300)
T ss_pred eEeccCC-CccceeeeEecc---cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeeec
Confidence 7899999 999999999998 6689999999999999999999999999999999999999977766 9999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCcc--CC-CCCCCHHHHHHHHHHHHHcCCccEEE
Q 028869 94 LWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK--ED-FLPMDFKSVWEAMEECQNLGYTKAIG 170 (202)
Q Consensus 94 ~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (202)
+|+..+.++.+..++++||++||+||+|||++|||...++ ..|.+. +. +...+..++|++||++++.|++|+||
T Consensus 81 lw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIG 157 (300)
T KOG1577|consen 81 LWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIG 157 (300)
T ss_pred cCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCcccccccccccchHHHHHHHHHHHHHcCCceEee
Confidence 9999999999999999999999999999999999977644 233321 11 33357899999999999999999999
Q ss_pred eCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 171 VSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 171 vSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
||||+..+++++++.++++|++||+||||.+
T Consensus 158 VSNF~~~~le~ll~~~ki~P~vnQvE~HP~~ 188 (300)
T KOG1577|consen 158 VSNFNIKQLEELLNLAKIKPAVNQVECHPYL 188 (300)
T ss_pred eecCCHHHHHHHHhcCCCCCccceeeccCCc
Confidence 9999999999999999999999999999943
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.7e-48 Score=316.18 Aligned_cols=167 Identities=40% Similarity=0.722 Sum_probs=153.2
Q ss_pred CCeeecCCCCCccccceeeCCcCCCCChhH-HHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEE
Q 028869 12 IPDVPLKSSNRRMPVLGLGTAASPFSGSET-TKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFI 90 (202)
Q Consensus 12 ~~~~~l~~~~~~v~~lglG~~~~~~~~~~~-~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I 90 (202)
+++.+|++| .+||.||||||+++ .+. +.+.+..|++.|||+||||..||||+.+|++++.. |+ +|+++||
T Consensus 3 ~~~~~l~~g-~~iP~iGlGt~~~~---~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelFi 73 (280)
T COG0656 3 KTKVTLNNG-VEIPAIGLGTWQIG---DDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELFI 73 (280)
T ss_pred CceeecCCC-CcccCcceEeeecC---CchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeEE
Confidence 467889998 88999999999965 333 88999999999999999999999999999999985 77 9999999
Q ss_pred eeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 028869 91 ASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (202)
Q Consensus 91 ~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (202)
+||+|+....++.+.+++++||++||+||+|||++|||.+. . ...++++|++||+++++|+||+||
T Consensus 74 ttKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~-------------~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 74 TTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K-------------YVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred EeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c-------------CccHHHHHHHHHHHHhcCCccEEE
Confidence 99999999999999999999999999999999999999653 1 111689999999999999999999
Q ss_pred eCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 171 VSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 171 vSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
||||+..+++++++.+++.|++||+||||.+
T Consensus 140 VSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~ 170 (280)
T COG0656 140 VSNFGVEHLEELLSLAKVKPAVNQIEYHPYL 170 (280)
T ss_pred eeCCCHHHHHHHHHhcCCCCceEEEEeccCC
Confidence 9999999999999999999999999999974
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9.1e-41 Score=281.45 Aligned_cols=167 Identities=32% Similarity=0.447 Sum_probs=151.1
Q ss_pred CCeeecCCCCCccccceeeCCcCCC----CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCC
Q 028869 12 IPDVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKS 84 (202)
Q Consensus 12 ~~~~~l~~~~~~v~~lglG~~~~~~----~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~ 84 (202)
|.+++||++|++||+||||||.+++ .+.+++.+++++|+++||||||||+.|| +|+.+|++|+.. + .
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~---~ 74 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G---R 74 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C---C
Confidence 7899999988999999999999986 3444677899999999999999999999 899999999975 3 3
Q ss_pred CCceEEeeccCC----------CCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHH
Q 028869 85 RDELFIASKLWC----------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (202)
Q Consensus 85 R~~~~I~tK~~~----------~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
|++++|+||+.. .+.+++.|.++++.||++|||||+|+|++|||+...| .++++
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p----------------~~e~~ 138 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP----------------IEETL 138 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC----------------HHHHH
Confidence 899999999832 2458999999999999999999999999999998766 78899
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
++|.+|+++|+||+||+||++.+++.++.+.+ .+++++|.+||...
T Consensus 139 ~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~ 184 (316)
T COG0667 139 EALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLE 184 (316)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCcccc
Confidence 99999999999999999999999999999987 67899999999753
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.7e-39 Score=269.89 Aligned_cols=173 Identities=27% Similarity=0.358 Sum_probs=158.1
Q ss_pred CCCCCCeeecCCCCCccccceeeCCcC---CC-CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCC
Q 028869 8 GSISIPDVPLKSSNRRMPVLGLGTAAS---PF-SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTG 80 (202)
Q Consensus 8 ~~~~~~~~~l~~~~~~v~~lglG~~~~---~~-~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~ 80 (202)
+...|++++|+++|++||++|||||.+ ++ ++.+++.+++++|+++|+|+||||+.|| ||..+|++|+++ +
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~ 84 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G 84 (336)
T ss_pred chhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C
Confidence 446699999999999999999999532 22 6999999999999999999999999999 799999999998 6
Q ss_pred CCCCCCceEEeeccC-------CCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHH
Q 028869 81 IIKSRDELFIASKLW-------CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSV 153 (202)
Q Consensus 81 ~~~~R~~~~I~tK~~-------~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
+ +|++++|+||++ ....++..+...++.|+++||++|+|+|++||+|+..| .+++
T Consensus 85 ~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p----------------iee~ 146 (336)
T KOG1575|consen 85 W--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP----------------IEET 146 (336)
T ss_pred C--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC----------------HHHH
Confidence 6 899999999983 24567788999999999999999999999999999887 8999
Q ss_pred HHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 154 WEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
+++|.+++++|+||+||+|+++++++.++...++++|+++|++||.-+
T Consensus 147 m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~ 194 (336)
T KOG1575|consen 147 MRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLS 194 (336)
T ss_pred HHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhh
Confidence 999999999999999999999999999999999989999999999754
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.3e-39 Score=266.54 Aligned_cols=158 Identities=34% Similarity=0.657 Sum_probs=141.5
Q ss_pred CccccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCCh
Q 028869 22 RRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (202)
Q Consensus 22 ~~v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 101 (202)
++||.||||||+++ .+++.++++.|++.|||+||||+.||+|..+|++|+.. +. +|+++||+||++....++
T Consensus 1 ~~vs~lglGt~~~~---~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~ 72 (267)
T PRK11172 1 MSIPAFGLGTFRLK---DQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAK 72 (267)
T ss_pred CCCCCEeeEccccC---hHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCH
Confidence 36999999999854 67899999999999999999999999999999999875 65 799999999998777888
Q ss_pred hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHH
Q 028869 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 181 (202)
+.+++++++||++||+||+|+|++|||++.. .....++|++|++|+++||||+||||||+.+++++
T Consensus 73 ~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~ 138 (267)
T PRK11172 73 DKLIPSLKESLQKLRTDYVDLTLIHWPSPND--------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQ 138 (267)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCC--------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHH
Confidence 9999999999999999999999999996421 11367899999999999999999999999999999
Q ss_pred HHHhCCC-CCeeeeeecccCc
Q 028869 182 ILATAKI-PPAANQVSFLKKY 201 (202)
Q Consensus 182 l~~~~~~-~p~~~Q~e~~~~~ 201 (202)
+++.++. +|+++|++|||..
T Consensus 139 ~~~~~~~~~~~~~Q~~~~~~~ 159 (267)
T PRK11172 139 AIAAVGAENIATNQIELSPYL 159 (267)
T ss_pred HHHhcCCCCCeEEeeecCCCC
Confidence 9987765 6899999999853
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.2e-39 Score=272.58 Aligned_cols=166 Identities=29% Similarity=0.410 Sum_probs=146.1
Q ss_pred eeecCCCCCccccceeeCCc-CCC-CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCce
Q 028869 14 DVPLKSSNRRMPVLGLGTAA-SPF-SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDEL 88 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~-~~~-~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~~~ 88 (202)
+++||++|++||+||||||. ++. .+.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. +. +|+++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~~ 75 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSSY 75 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--CcccE
Confidence 46788888999999999997 443 6788999999999999999999999998 799999999864 54 69999
Q ss_pred EEeeccC-C------CCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q 028869 89 FIASKLW-C------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (202)
Q Consensus 89 ~I~tK~~-~------~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (202)
+|+||++ . ...+++.++++++.||++||+||+|+|++|||+...+ .+++|++|++|+
T Consensus 76 ~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~----------------~~e~~~aL~~l~ 139 (317)
T TIGR01293 76 VITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP----------------MEETVRAMTYVI 139 (317)
T ss_pred EEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC----------------HHHHHHHHHHHH
Confidence 9999973 2 1357899999999999999999999999999976544 789999999999
Q ss_pred HcCCccEEEeCCCCHHHHHHHHHhCC----CCCeeeeeecccC
Q 028869 162 NLGYTKAIGVSNFSCKKLGDILATAK----IPPAANQVSFLKK 200 (202)
Q Consensus 162 ~~G~ir~iGvSn~~~~~l~~l~~~~~----~~p~~~Q~e~~~~ 200 (202)
++|+||+||||||++++++++...+. ++|+++|++||+.
T Consensus 140 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~ 182 (317)
T TIGR01293 140 NQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMF 182 (317)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChH
Confidence 99999999999999999988776543 6889999999975
No 7
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.4e-39 Score=265.15 Aligned_cols=163 Identities=37% Similarity=0.696 Sum_probs=146.0
Q ss_pred CeeecCCCCCccccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEee
Q 028869 13 PDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIAS 92 (202)
Q Consensus 13 ~~~~l~~~~~~v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~t 92 (202)
+++.|.+| ++||.||||||++ +.+++.++++.|++.|+|+||||..||+|+.+|++|+.. ++ +|++++|+|
T Consensus 5 ~~~~l~~g-~~v~~lglG~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~t 75 (275)
T PRK11565 5 TVIKLQDG-NVMPQLGLGVWQA---SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFITT 75 (275)
T ss_pred ceEEcCCC-CccCCcceECccC---CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEEE
Confidence 45678766 9999999999984 578899999999999999999999999999999999875 54 799999999
Q ss_pred ccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeC
Q 028869 93 KLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS 172 (202)
Q Consensus 93 K~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 172 (202)
|++.. +++.++++++.||++||++|+|+|++|||++..+ ...++|++|++|+++|+||+||||
T Consensus 76 K~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~---------------~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 76 KLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID---------------HYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred EecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC---------------cHHHHHHHHHHHHHcCCeeEEeec
Confidence 99753 4689999999999999999999999999975321 267899999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 173 NFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 173 n~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
||++++++++++.++++|+++|++++|.+
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~ 167 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLM 167 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCcc
Confidence 99999999999888888999999999864
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.3e-38 Score=271.91 Aligned_cols=171 Identities=26% Similarity=0.374 Sum_probs=147.7
Q ss_pred CCCCeeecCCCCCccccceeeCCc-CCC-CChhHHHHHHHHHHHcCCcEEeCCCCCC-----ChHHHHHHHHHHHhCCCC
Q 028869 10 ISIPDVPLKSSNRRMPVLGLGTAA-SPF-SGSETTKLAILEAMKLGYRHFDTATLYQ-----TEQPLGDAIAEALSTGII 82 (202)
Q Consensus 10 ~~~~~~~l~~~~~~v~~lglG~~~-~~~-~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-----~e~~~g~~l~~~~~~~~~ 82 (202)
..|++++||++|++||+||||||+ ++. .+.+++.++++.|++.|||+||||+.|| +|+.+|++|+... +.
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~- 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA- 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC-
Confidence 459999999999999999999997 543 3567789999999999999999999998 6999999998531 12
Q ss_pred CCCCceEEeeccC----CC----CCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHH
Q 028869 83 KSRDELFIASKLW----CS----DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (202)
Q Consensus 83 ~~R~~~~I~tK~~----~~----~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
.|++++|+||++ +. ..+++.+++++++||++||+||+|+|++|||+...| .+++|
T Consensus 88 -~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~----------------~~e~~ 150 (346)
T PRK09912 88 -YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP----------------MEETA 150 (346)
T ss_pred -CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC----------------HHHHH
Confidence 599999999973 21 356889999999999999999999999999976544 78999
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHHh---CCCCCeeeeeecccC
Q 028869 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILAT---AKIPPAANQVSFLKK 200 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~---~~~~p~~~Q~e~~~~ 200 (202)
++|++|+++||||+||||||++++++++.+. ..++|+++|++||+.
T Consensus 151 ~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll 199 (346)
T PRK09912 151 SALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLL 199 (346)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCce
Confidence 9999999999999999999999998876653 356889999999974
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.4e-38 Score=270.24 Aligned_cols=182 Identities=27% Similarity=0.368 Sum_probs=148.7
Q ss_pred CCeeecCCCCCccccceeeCCcCCC-CChhHHHHHHHHHHHcCCcEEeCCCCCC----------ChHHHHHHHHHHHhCC
Q 028869 12 IPDVPLKSSNRRMPVLGLGTAASPF-SGSETTKLAILEAMKLGYRHFDTATLYQ----------TEQPLGDAIAEALSTG 80 (202)
Q Consensus 12 ~~~~~l~~~~~~v~~lglG~~~~~~-~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----------~e~~~g~~l~~~~~~~ 80 (202)
|++++||++|++||+||||||+++. .+.+++.++++.|++.|||+||||+.|| +|..+|++|+.. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 6789999999999999999999875 5788899999999999999999999996 899999999853 3
Q ss_pred CCCCCCceEEeeccCCC------------CCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCC--CCCCCCCccCCCC
Q 028869 81 IIKSRDELFIASKLWCS------------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKP--GSYEFPIKKEDFL 146 (202)
Q Consensus 81 ~~~~R~~~~I~tK~~~~------------~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~--~~~~~~~~~~~~~ 146 (202)
+|++++|+||++.. ..+++.+++++++||++||++|+|+|++|||+.... ++..+....++ .
T Consensus 78 ---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~-~ 153 (346)
T PRK10625 78 ---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSA-P 153 (346)
T ss_pred ---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccccccccc-C
Confidence 69999999998531 357899999999999999999999999999965311 11111100100 0
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhC---C-CCCeeeeeecccC
Q 028869 147 PMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA---K-IPPAANQVSFLKK 200 (202)
Q Consensus 147 ~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~---~-~~p~~~Q~e~~~~ 200 (202)
...+.++|++|++|+++|+||+||+|||+..++++++..+ . ..+.++|.+||+.
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~ 211 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLL 211 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcc
Confidence 2347899999999999999999999999999998877643 2 3477899999874
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4.5e-38 Score=261.15 Aligned_cols=167 Identities=38% Similarity=0.568 Sum_probs=150.9
Q ss_pred eeecCCCCCccccceeeCCcCCC--CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCce
Q 028869 14 DVPLKSSNRRMPVLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDEL 88 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~~~~--~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~~~ 88 (202)
+++|+++|.+||+||||||.++. .+.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|+++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~~ 74 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREEV 74 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCcE
Confidence 46788777999999999999875 3778999999999999999999999999 899999999965 2 39999
Q ss_pred EEeeccCCCC-----CChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHc
Q 028869 89 FIASKLWCSD-----AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (202)
Q Consensus 89 ~I~tK~~~~~-----~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 163 (202)
+|+||++... .+++.+++++++||++||++|+|+|++|+|+...+ ...++|++|++++++
T Consensus 75 ~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~---------------~~~~~~~~l~~l~~~ 139 (285)
T cd06660 75 FIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP---------------DIEETLRALEELVKE 139 (285)
T ss_pred EEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC---------------CHHHHHHHHHHHHHc
Confidence 9999997654 57899999999999999999999999999975422 368999999999999
Q ss_pred CCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 164 GYTKAIGVSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 164 G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
|+||+||||||++..++++++.+..+|+++|++|||.+
T Consensus 140 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~ 177 (285)
T cd06660 140 GKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLD 177 (285)
T ss_pred CCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCccc
Confidence 99999999999999999999988889999999999875
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.2e-37 Score=260.08 Aligned_cols=168 Identities=22% Similarity=0.312 Sum_probs=141.2
Q ss_pred eeecCCCCCccccceeeCCcCCC----CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCC
Q 028869 14 DVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD 86 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~~~~----~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~ 86 (202)
||+||++|++||+||||||+++. .+.+++.++++.|++.|||+||||+.|| +|..+|++|+.. +. +|+
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R~ 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PRE 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Ccc
Confidence 57789888999999999998863 6788999999999999999999999997 699999999875 44 799
Q ss_pred ceEEeeccCC----CCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH
Q 028869 87 ELFIASKLWC----SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN 162 (202)
Q Consensus 87 ~~~I~tK~~~----~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 162 (202)
+++|+||++. ...+++.+++++++||++||+||+|+|++|+|+...+ .....++|++|++|++
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-------------~~~~~~~~~~l~~l~~ 142 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL-------------DQIVNETIPALQKLKE 142 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch-------------hhhHHHHHHHHHHHHH
Confidence 9999999864 2567899999999999999999999999999964221 1125689999999999
Q ss_pred cCCccEEEeCCCCHHHHHHHHHhCC---CCCeeeeeeccc
Q 028869 163 LGYTKAIGVSNFSCKKLGDILATAK---IPPAANQVSFLK 199 (202)
Q Consensus 163 ~G~ir~iGvSn~~~~~l~~l~~~~~---~~p~~~Q~e~~~ 199 (202)
+||||+||+|||++++++.+.+... +.++++|..++.
T Consensus 143 ~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (314)
T PLN02587 143 SGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSL 182 (314)
T ss_pred CCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCc
Confidence 9999999999999999888876432 233445555543
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-35 Score=245.49 Aligned_cols=163 Identities=22% Similarity=0.281 Sum_probs=138.4
Q ss_pred eeecCCCCCccccceeeCCcCCC-------CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCC
Q 028869 14 DVPLKSSNRRMPVLGLGTAASPF-------SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIK 83 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~~~~-------~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~ 83 (202)
++.|+ + ++||+||||||+++. .+.+++.++++.|++.|||+||||+.|| +|+.+|++++.
T Consensus 9 ~~~l~-g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------- 78 (290)
T PRK10376 9 TFTLG-G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------- 78 (290)
T ss_pred ceecC-C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc--------
Confidence 45676 5 999999999999863 3568899999999999999999999998 58899999862
Q ss_pred CCCceEEeeccC---------CCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCC-CCCCCCCCCCccCCCCCCCHHHH
Q 028869 84 SRDELFIASKLW---------CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVS-SKPGSYEFPIKKEDFLPMDFKSV 153 (202)
Q Consensus 84 ~R~~~~I~tK~~---------~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
.|++++|+||+. +...+++.++++++.||++||++|+|+|++|+++. ..| . .....++
T Consensus 79 ~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p------~------~~~~~~~ 146 (290)
T PRK10376 79 YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGP------A------EGSIEEP 146 (290)
T ss_pred CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCC------C------CCCHHHH
Confidence 599999999973 23567899999999999999999999999998632 111 0 1236789
Q ss_pred HHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeecccC
Q 028869 154 WEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVSFLKK 200 (202)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~ 200 (202)
|++|++|+++||||+||||||++++++++.+.+ ++.++|++||+.
T Consensus 147 ~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~ 191 (290)
T PRK10376 147 LTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLA 191 (290)
T ss_pred HHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCC
Confidence 999999999999999999999999999998866 568899999975
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=8.6e-36 Score=247.23 Aligned_cols=155 Identities=36% Similarity=0.583 Sum_probs=136.3
Q ss_pred cceeeCCcCCC--CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCceEEeecc-----C
Q 028869 26 VLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKL-----W 95 (202)
Q Consensus 26 ~lglG~~~~~~--~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-----~ 95 (202)
+||||||++++ .+.+++.++++.|++.|||+||||+.|| +|+.+|++|++. +. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 58999999874 8999999999999999999999999993 899999999983 44 89999999999 6
Q ss_pred CCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 028869 96 CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (202)
Q Consensus 96 ~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 175 (202)
....+++.+++++++||++||++|+|+|++|+|+...+ ...++|++|++|+++|+||+||||||+
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~---------------~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED---------------ALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS---------------HHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred cccccccccccccccccccccccchhcccccccccccc---------------ccchhhhhhhhcccccccccccccccc
Confidence 67888999999999999999999999999999975432 278999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCeeeeeecccC
Q 028869 176 CKKLGDILATAKIPPAANQVSFLKK 200 (202)
Q Consensus 176 ~~~l~~l~~~~~~~p~~~Q~e~~~~ 200 (202)
+++++++.+...++|+++|++||+.
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~ 165 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLL 165 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTT
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999887889999999999986
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2e-35 Score=246.85 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=133.0
Q ss_pred CccccceeeCCcCCC-----------CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceE
Q 028869 22 RRMPVLGLGTAASPF-----------SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELF 89 (202)
Q Consensus 22 ~~v~~lglG~~~~~~-----------~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~ 89 (202)
++||+||||||+++. .+.+++.++++.|++.|||+||||+.|| +|..+|++|+.. .+++++
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~~ 75 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRVT 75 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEee
Confidence 789999999998873 4788999999999999999999999999 799999999631 356788
Q ss_pred EeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCC-CCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccE
Q 028869 90 IASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSS-KPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKA 168 (202)
Q Consensus 90 I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 168 (202)
|+||.. ..+++.+++++++||++||+||+|+|++|+|+.. .+ ..+++|++|++|+++||||+
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~---------------~~~~~~~~l~~l~~~Gkir~ 138 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGP---------------HGAALWERLQALKDQGLFAK 138 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCc---------------chHHHHHHHHHHHHcCCcce
Confidence 999842 3567899999999999999999999999998642 11 12578999999999999999
Q ss_pred EEeCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 169 IGVSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 169 iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
||||||++.++.++.+ .++|+++|++||+.+
T Consensus 139 iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~ 169 (292)
T PRK14863 139 IGVSAHASDDPVGVAR--RFKPDILQAPASLLD 169 (292)
T ss_pred EeeeccCHHHHHHHHh--cCCCCEEEecCCccc
Confidence 9999999999988765 458999999999853
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=235.74 Aligned_cols=169 Identities=25% Similarity=0.318 Sum_probs=153.7
Q ss_pred CCeeecCCCCCccccceeeCCcCCC--CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCC
Q 028869 12 IPDVPLKSSNRRMPVLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD 86 (202)
Q Consensus 12 ~~~~~l~~~~~~v~~lglG~~~~~~--~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~ 86 (202)
|.++.+++.++++|+|.+|+|++.. .+++++...++.|++.|||+||-|+.|| +|..+|.+|+.. +- -|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~---p~--lRe 75 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA---PG--LRE 75 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC---hh--hhh
Confidence 6788999777999999999999876 6778999999999999999999999999 799999999865 33 699
Q ss_pred ceEEeeccC------------CCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHH
Q 028869 87 ELFIASKLW------------CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (202)
Q Consensus 87 ~~~I~tK~~------------~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
++.|.||+. ..+.+.++|..+++.||.+|++||+|++++|+||+.. +.+++.
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLm----------------d~eeVA 139 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLM----------------DAEEVA 139 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccC----------------CHHHHH
Confidence 999999983 2367889999999999999999999999999998753 479999
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
+++..|++.||||+.|||||++.|++-+.+...-+.++||+|+||.+
T Consensus 140 eAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~ 186 (298)
T COG4989 140 EAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLH 186 (298)
T ss_pred HHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeecccc
Confidence 99999999999999999999999999999888778899999999975
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.97 E-value=9e-31 Score=209.87 Aligned_cols=159 Identities=29% Similarity=0.399 Sum_probs=139.4
Q ss_pred CCCCeeecCCCCCccccceeeCCcCCC----CChhHHHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCC
Q 028869 10 ISIPDVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGII 82 (202)
Q Consensus 10 ~~~~~~~l~~~~~~v~~lglG~~~~~~----~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~ 82 (202)
+.|.+|.++++|++||+||||...++. .+.++....+..|+++|||+|||++.|| +|..+|.++++-
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v------ 93 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV------ 93 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC------
Confidence 459999999999999999999976543 6788888888889999999999999999 799999999865
Q ss_pred CCCCceEEeeccCC--------CCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHH
Q 028869 83 KSRDELFIASKLWC--------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (202)
Q Consensus 83 ~~R~~~~I~tK~~~--------~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
+|+.++|+||+.. .+++++.+++++++||++|+++|+|++++|..+.-. + .+..+.+++
T Consensus 94 -PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap---~---------ld~vl~Etl 160 (342)
T KOG1576|consen 94 -PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAP---N---------LDIVLNETL 160 (342)
T ss_pred -ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccc---c---------ccHHHHHHH
Confidence 9999999999953 467889999999999999999999999999765421 0 123478999
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 028869 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~ 187 (202)
.+|++++++||+|+|||+.+..+-+.++.+...
T Consensus 161 p~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~ 193 (342)
T KOG1576|consen 161 PALEELKQEGKIRFIGITGYPLDVLTECAERGK 193 (342)
T ss_pred HHHHHHHhcCceeEeeecccchHHHHHHHhcCC
Confidence 999999999999999999999999999987654
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.96 E-value=6.8e-30 Score=212.94 Aligned_cols=166 Identities=23% Similarity=0.305 Sum_probs=140.6
Q ss_pred CCeeecCCCCCccccceeeCCcCCC-----CChhHHHHHHHHHHHcCCcEEeCCCCC--C-ChHHHHHHHHHHHhCCCCC
Q 028869 12 IPDVPLKSSNRRMPVLGLGTAASPF-----SGSETTKLAILEAMKLGYRHFDTATLY--Q-TEQPLGDAIAEALSTGIIK 83 (202)
Q Consensus 12 ~~~~~l~~~~~~v~~lglG~~~~~~-----~~~~~~~~~l~~A~~~Gi~~~Dta~~Y--g-~e~~~g~~l~~~~~~~~~~ 83 (202)
|.||+++.+|.++|.+|||+|+++. +|.+.+.++++.|++.|||+||||..| | +|..+|+||+..
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------- 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------- 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-------
Confidence 6788899988999999999999875 589999999999999999999999999 7 899999999975
Q ss_pred CCCceEEeeccCC-CCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH
Q 028869 84 SRDELFIASKLWC-SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN 162 (202)
Q Consensus 84 ~R~~~~I~tK~~~-~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 162 (202)
+|+++.++||+.. ...+++++++-++++|++||+||+|+|++|....... ....--+.|+.++++++
T Consensus 74 ~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~------------~k~~~~g~~df~~kak~ 141 (391)
T COG1453 74 YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETW------------EKIERLGVFDFLEKAKA 141 (391)
T ss_pred ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHH------------HHHHccChHHHHHHHHh
Confidence 8999999999954 3456799999999999999999999999998754221 11111237899999999
Q ss_pred cCCccEEEeCCCC-HHHHHHHHHhCCCCCeeeeeecc
Q 028869 163 LGYTKAIGVSNFS-CKKLGDILATAKIPPAANQVSFL 198 (202)
Q Consensus 163 ~G~ir~iGvSn~~-~~~l~~l~~~~~~~p~~~Q~e~~ 198 (202)
+|+||++|+|.|+ ++.+.+++.... .+.+|+.++
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~n 176 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYN 176 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeee
Confidence 9999999999999 567788887554 566666654
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.46 E-value=5.8e-07 Score=71.96 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcC----CCceeEe------eeccCCCCCCCC------CCCCCccCCCCC
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ----LEYIDLY------VIHWPVSSKPGS------YEFPIKKEDFLP 147 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg----~~~vDl~------~lh~p~~~~~~~------~~~~~~~~~~~~ 147 (202)
.++++-|..|++..++.-+.++...+..++-+- +..+|.+ ++|.-.-..++- +.+..+..+..-
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 577788888987777776777777776665442 1112221 111111111100 001111111111
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeecccC
Q 028869 148 MDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVSFLKK 200 (202)
Q Consensus 148 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~~~~ 200 (202)
..+.+.|+.||+++.+|+|..||||.|++.++++++..+.++|.++|+++.-|
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~c 205 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQC 205 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecccc
Confidence 34788999999999999999999999999999999999999999999998654
No 19
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=82.35 E-value=15 Score=32.39 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCC-CCHHHHHHHHH-HHHHcCCccEEEeC
Q 028869 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLP-MDFKSVWEAME-ECQNLGYTKAIGVS 172 (202)
Q Consensus 95 ~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~l~~~G~ir~iGvS 172 (202)
.-+..+.+.+.+.++..+ .|+.+++.+|.+-.-.......... +.....+ ....+.++..+ .|.+.|. +.+|+|
T Consensus 197 glP~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~--~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeis 272 (416)
T COG0635 197 GLPGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKI--KGKALPDEDEKADMYELVEELLEKAGY-RQYEIS 272 (416)
T ss_pred CCCCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcc--cCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeec
Confidence 345566677777777665 5678999998875421111100000 0000001 01224444444 4556676 999999
Q ss_pred CCCH
Q 028869 173 NFSC 176 (202)
Q Consensus 173 n~~~ 176 (202)
||..
T Consensus 273 nfa~ 276 (416)
T COG0635 273 NFAK 276 (416)
T ss_pred hhcC
Confidence 9987
No 20
>PRK13796 GTPase YqeH; Provisional
Probab=81.73 E-value=34 Score=29.61 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHHHcC---CcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeecc--CCCCCChhhHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLG---YRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL--WCSDAHRELVVPALQKS 111 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~G---i~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~--~~~~~~~~~i~~~~~~s 111 (202)
.+.++..++++..-+.- +-.+|..+.-++ +-..|++.. + .+.-++|.+|. .+.....+.+.+.++..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~--~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFV--G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHh--C---CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 45565666666665544 345676554333 112233321 2 45568899996 33333345666666666
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDIL 183 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~ 183 (202)
.+.+|....+++.+..-.. ....++++.+.++.+.+.+--+|.+|.....+-..+
T Consensus 126 ~k~~g~~~~~v~~vSAk~g-----------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKG-----------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHhcCCCcCcEEEEECCCC-----------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 7777765557776664321 237788888888877788889999999987776554
No 21
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=78.11 E-value=50 Score=29.42 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCcEEeCCCCCCChH------------HHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHH
Q 028869 43 KLAILEAMKLGYRHFDTATLYQTEQ------------PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~Dta~~Yg~e~------------~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 110 (202)
.+.++...++|+|.+...-.-.++. .+-++++...+.| ...+.+..=++-+..+.+.+.+.++.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g----~~~v~~DlI~GlPgqT~e~~~~~l~~ 238 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD----RAAVVCDLIFGLPGQTPEIWQQDLAI 238 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC----CCcEEEEEEeeCCCCCHHHHHHHHHH
Confidence 3455666677888886554332222 2223444432222 12233333335567778888888777
Q ss_pred HHHHcCCCceeEeeeccCCCCCCCCCCCCC-ccCCCCCC-CHH---HHH-HHHHHHHHcCCccEEEeCCCCHH
Q 028869 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPI-KKEDFLPM-DFK---SVW-EAMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 111 sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~-~~~~~~~~-~~~---~~~-~~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
.+ .++.+++++|.+.-. +.++ .+.. ..+.+... +.+ +.+ .+.+.|.+.|. +++++|||...
T Consensus 239 ~~-~l~~~~is~y~L~~~-pgT~---l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far~ 305 (449)
T PRK09058 239 VR-DLGLDGVDLYALNLL-PGTP---LAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWART 305 (449)
T ss_pred HH-hcCCCEEEEeccccC-CCCH---HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeecC
Confidence 66 489999999987732 1121 0000 00001000 111 222 34456778887 56999999863
No 22
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.77 E-value=21 Score=31.33 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeecc-CCCCCChhhHHHHHHHHHHHcC
Q 028869 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL-WCSDAHRELVVPALQKSLENLQ 116 (202)
Q Consensus 38 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-~~~~~~~~~i~~~~~~sL~~Lg 116 (202)
++.....++++|++.|++++|||...-....+.+..+++ | +.+..-+ +.+..+--.....+++.-. .
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~A---g-------it~v~~~G~dPGi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKA---G-------ITAVLGCGFDPGITNVLAAYAAKELFD--E 144 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHc---C-------eEEEcccCcCcchHHHHHHHHHHHhhc--c
Confidence 445556889999999999999997654433333333332 3 2333332 2222221222222222222 5
Q ss_pred CCceeEeeeccCCCC
Q 028869 117 LEYIDLYVIHWPVSS 131 (202)
Q Consensus 117 ~~~vDl~~lh~p~~~ 131 (202)
++++|+|..+.|+..
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 889999999988654
No 23
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=74.35 E-value=52 Score=27.74 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=77.9
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++..++++.+.+.|++.+.-...-. -...+-+.++...+.+ .-..+.|+|... .+.+.+ ..|...
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~---~~~~i~itTNG~-------ll~~~~-~~L~~a 117 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP---GIRDLALTTNGY-------LLARRA-AALKDA 117 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC---CCceEEEEcCch-------hHHHHH-HHHHHc
Confidence 6788899999999899998887653111 1222445554431111 123566766632 122222 334455
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCC-CCCCHHHHHHHHHHHHHcCC----ccEEEeCCCCHHHHHHHHHhCC-CC
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDF-LPMDFKSVWEAMEECQNLGY----TKAIGVSNFSCKKLGDILATAK-IP 189 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~l~~~~~-~~ 189 (202)
|++.+- +-+|..++..- ..+ ....++.++++++.+++.|. +..+.+-..+.+++.++++.++ ..
T Consensus 118 gl~~i~-ISlds~~~e~~---------~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 118 GLDRVN-VSLDSLDPERF---------KAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred CCCEEE-EEeccCCHHHh---------ccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 655443 23344332110 000 01247899999999999986 2345455667778887777653 34
Q ss_pred Ceeeeeeccc
Q 028869 190 PAANQVSFLK 199 (202)
Q Consensus 190 p~~~Q~e~~~ 199 (202)
..+.-+++.|
T Consensus 188 v~v~~ie~~p 197 (331)
T PRK00164 188 IQLRFIELMP 197 (331)
T ss_pred CeEEEEEeeE
Confidence 4455555554
No 24
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=74.04 E-value=54 Score=27.80 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHHc-CCcEEeCCCCC---CChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHH
Q 028869 38 GSETTKLAILEAMKL-GYRHFDTATLY---QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (202)
Q Consensus 38 ~~~~~~~~l~~A~~~-Gi~~~Dta~~Y---g~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~ 113 (202)
+.++..++++..-+. ||+-+-.+..- .+...+.+.++...+.+ ..+.+.|.|++... .+..+.+.+-+.|+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~---~v~~iri~Tr~~v~--~p~rit~ell~~L~ 194 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID---HVKIVRFHTRVPVA--DPARVTPALIAALK 194 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC---CccEEEEeCCCccc--ChhhcCHHHHHHHH
Confidence 456666777655534 88755332211 13345555555542222 23456777775211 11233444445666
Q ss_pred HcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEE------EeCCCCHHHHHHHHHh
Q 028869 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI------GVSNFSCKKLGDILAT 185 (202)
Q Consensus 114 ~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~l~~l~~~ 185 (202)
+.|.. ..+.+|...... -..+++++++.|++.|..-.+ |+ |.+.+.+.++.+.
T Consensus 195 ~~g~~--v~i~l~~~h~~e----------------l~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~ 253 (321)
T TIGR03822 195 TSGKT--VYVALHANHARE----------------LTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRA 253 (321)
T ss_pred HcCCc--EEEEecCCChhh----------------cCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHH
Confidence 66732 346777653211 146899999999999963222 44 6787777776654
No 25
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.41 E-value=33 Score=28.32 Aligned_cols=76 Identities=21% Similarity=0.097 Sum_probs=53.6
Q ss_pred Chh-HHHHHHHHHHHcCCcEEeCCCCCC----ChH---HHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHH
Q 028869 38 GSE-TTKLAILEAMKLGYRHFDTATLYQ----TEQ---PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (202)
Q Consensus 38 ~~~-~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~---~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 109 (202)
+.+ +..++.+.|+++|..|+=|+..|+ +.+ .+-+.+++. +. .. .+..|....-.+.+...+-++
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~~---~~--~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---GV---AK--TVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---cc---CC--CeeEEccCCCCCHHHHHHHHH
Confidence 455 478899999999999999999986 222 223333321 11 11 256677677777788888899
Q ss_pred HHHHHcCCCcee
Q 028869 110 KSLENLQLEYID 121 (202)
Q Consensus 110 ~sL~~Lg~~~vD 121 (202)
..-+.||.+|++
T Consensus 216 ag~~~lg~~~~~ 227 (257)
T PRK05283 216 LADEILGADWAD 227 (257)
T ss_pred HHHHHhChhhcC
Confidence 999999988765
No 26
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=70.52 E-value=41 Score=27.99 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhC
Q 028869 146 LPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 146 ~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~ 186 (202)
++++.+-.-++..+++++|.. |=+|+|..++++++++..
T Consensus 162 DPVN~elLk~~I~~lk~~Gat--IifSsH~Me~vEeLCD~l 200 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGAT--IIFSSHRMEHVEELCDRL 200 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCE--EEEecchHHHHHHHhhhh
Confidence 355666677788899999996 999999999999998853
No 27
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=70.27 E-value=17 Score=32.78 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCcEE--eCCCCC----------CChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC-CCChhhHHH----
Q 028869 44 LAILEAMKLGYRHF--DTATLY----------QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAHRELVVP---- 106 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~--Dta~~Y----------g~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~-~~~~~~i~~---- 106 (202)
+-+....+.|.+.+ =||..| |+-+.+..+-++.+... -+..+|+++=+..= ...+....-
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v 183 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCce
Confidence 44566667777755 244443 24455666666665322 46778888777431 111111110
Q ss_pred ------HHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHH
Q 028869 107 ------ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (202)
Q Consensus 107 ------~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~ 180 (202)
.-.+.-+++.+.|+|.+. + +++++++-.++.+++|+..+||+-.--.+-+.
T Consensus 184 ~i~vEvd~~ri~kR~~~gyld~~~----~-------------------~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~ 240 (545)
T TIGR01228 184 SIAVEVDESRIDKRLETKYCDEQT----D-------------------SLDEALARAEEAKAEGKPISIGLLGNAAEVLP 240 (545)
T ss_pred EEEEEECHHHHHHHHhcCcceeEc----C-------------------CHHHHHHHHHHHHHcCCceEEEeeccHHHHHH
Confidence 122334688889988743 1 27899999999999999999999998889999
Q ss_pred HHHHhCC-CCCeeeeeecccC
Q 028869 181 DILATAK-IPPAANQVSFLKK 200 (202)
Q Consensus 181 ~l~~~~~-~~p~~~Q~e~~~~ 200 (202)
++++..- +..+..|..+|.-
T Consensus 241 ~l~~r~i~pDlvtDQTSaHdp 261 (545)
T TIGR01228 241 ELLKRGVVPDVVTDQTSAHDP 261 (545)
T ss_pred HHHHcCCCCCCcCCCCcccCc
Confidence 9998642 2345688888753
No 28
>PRK05414 urocanate hydratase; Provisional
Probab=69.35 E-value=19 Score=32.62 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCcEE--eCCCCC----------CChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC-CCChhhHHH----
Q 028869 44 LAILEAMKLGYRHF--DTATLY----------QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAHRELVVP---- 106 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~--Dta~~Y----------g~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~-~~~~~~i~~---- 106 (202)
+-+....+.|+..+ =||..| |+-+.+..+-++.+. |- -+..+|+++=+..= ...+....-
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v 192 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAV 192 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCce
Confidence 44566667777655 244443 245556666666653 22 46778888877431 111111100
Q ss_pred ------HHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHH
Q 028869 107 ------ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (202)
Q Consensus 107 ------~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~ 180 (202)
.-.+.-+++.+.|+|.+. + +++++++..++.+++|+..+||+-.--.+-+.
T Consensus 193 ~i~vEvd~~ri~kR~~~gyld~~~----~-------------------~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~ 249 (556)
T PRK05414 193 CLAVEVDESRIDKRLRTGYLDEKA----D-------------------DLDEALALAEEAKAAGEPLSIGLLGNAADVLP 249 (556)
T ss_pred EEEEEECHHHHHHHHhCCcceeEc----C-------------------CHHHHHHHHHHHHHcCCceEEEEeccHHHHHH
Confidence 122334688889998743 1 27899999999999999999999998889999
Q ss_pred HHHHhCC-CCCeeeeeeccc
Q 028869 181 DILATAK-IPPAANQVSFLK 199 (202)
Q Consensus 181 ~l~~~~~-~~p~~~Q~e~~~ 199 (202)
++++..- +..+..|..+|.
T Consensus 250 ~l~~~~i~pDlvtDQTSaHd 269 (556)
T PRK05414 250 ELVRRGIRPDLVTDQTSAHD 269 (556)
T ss_pred HHHHcCCCCCccCcCccccC
Confidence 9998642 234568888865
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=67.37 E-value=77 Score=26.84 Aligned_cols=142 Identities=9% Similarity=0.047 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++...+++.+.+.|+..|--+..-. -...+-+.++...+.+ ...++.|+|... .+.+ .-..|...
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~L~~a 113 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAELADA 113 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHHHHHc
Confidence 6788888999988899998886543111 1112334444331112 122455665531 1222 33456667
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCC-CCCCHHHHHHHHHHHHHcCC--c--cEEEeCCCCHHHHHHHHHhCC-CC
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDF-LPMDFKSVWEAMEECQNLGY--T--KAIGVSNFSCKKLGDILATAK-IP 189 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~G~--i--r~iGvSn~~~~~l~~l~~~~~-~~ 189 (202)
|++.+.+ -++..++..- ..+ ....++.+++.++.+++.|. + ..+.+...+.+++.++++.+. ..
T Consensus 114 Gl~~v~I-SlDs~~~e~~---------~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 114 GLKRLNI-SLDTLRPELF---------AALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred CCCeEEE-EeccCCHHHh---------hhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 8776654 4444432111 000 01247899999999999986 2 344455577888888877664 33
Q ss_pred Ceeeeeeccc
Q 028869 190 PAANQVSFLK 199 (202)
Q Consensus 190 p~~~Q~e~~~ 199 (202)
+.+.=+++-|
T Consensus 184 i~~~~ie~mP 193 (329)
T PRK13361 184 LDIAFIEEMP 193 (329)
T ss_pred CeEEEEeccc
Confidence 3343344444
No 30
>PHA02820 phospholipase-D-like protein; Provisional
Probab=66.08 E-value=79 Score=28.05 Aligned_cols=63 Identities=8% Similarity=0.170 Sum_probs=37.2
Q ss_pred CCceEEeeccCCCC---CCh-----hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHH
Q 028869 85 RDELFIASKLWCSD---AHR-----ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEA 156 (202)
Q Consensus 85 R~~~~I~tK~~~~~---~~~-----~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
++.++|+|=.+-++ .+. ..+..++.+.-..=|++ |-+++-+|++.... ....+..
T Consensus 231 k~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~-VriLvp~~~d~~~~----------------~~a~~~~ 293 (424)
T PHA02820 231 SKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVS-VKLLISCWQRSSFI----------------MRNFLRS 293 (424)
T ss_pred hhEEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCE-EEEEEeccCCCCcc----------------HHHHHHH
Confidence 67788888765554 222 35666666544455653 66677666654221 3456677
Q ss_pred HHHHHHcC
Q 028869 157 MEECQNLG 164 (202)
Q Consensus 157 l~~l~~~G 164 (202)
|++|.+.|
T Consensus 294 l~~L~~~g 301 (424)
T PHA02820 294 IAMLKSKN 301 (424)
T ss_pred HHHHhccC
Confidence 77777666
No 31
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=65.69 E-value=50 Score=26.35 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHH--HHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLG--DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g--~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~ 113 (202)
.+.++...+.+.+.++|..|+-|+..|+ .-..++ +.+++.+ ++ .+..|....-.+.+...+-++..-.
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v-------~~--~v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTV-------GD--TIGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHh-------cc--CCeEEEeCCCCCHHHHHHHHHHhhH
Confidence 3457778999999999999999998886 111222 2334331 22 2455655555577888888888889
Q ss_pred HcCCCc
Q 028869 114 NLQLEY 119 (202)
Q Consensus 114 ~Lg~~~ 119 (202)
++|++.
T Consensus 200 riGts~ 205 (211)
T TIGR00126 200 RIGASA 205 (211)
T ss_pred HhCcch
Confidence 999874
No 32
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=63.99 E-value=13 Score=30.39 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCCccccceeeCCc---CCC---CChhHHHHH----HHHHHHcCCcEEeCCC
Q 028869 20 SNRRMPVLGLGTAA---SPF---SGSETTKLA----ILEAMKLGYRHFDTAT 61 (202)
Q Consensus 20 ~~~~v~~lglG~~~---~~~---~~~~~~~~~----l~~A~~~Gi~~~Dta~ 61 (202)
+|+.+|-+||.+++ ||+ ...+++.++ +..|.+.|||.|..|.
T Consensus 66 tgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 66 TGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred hCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 34999999999976 343 233444444 4555688999999885
No 33
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=63.97 E-value=81 Score=25.92 Aligned_cols=71 Identities=20% Similarity=0.093 Sum_probs=53.3
Q ss_pred CChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHH
Q 028869 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (202)
Q Consensus 99 ~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 178 (202)
.+.++-.+..+-..+.++++++-|=.+..+....| +..+++++.++|.++|.+ -+-+|+-++..
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp---------------d~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ 136 (248)
T cd04728 73 RTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLP---------------DPIETLKAAEILVKEGFT-VLPYCTDDPVL 136 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCcccccc---------------CHHHHHHHHHHHHHCCCE-EEEEeCCCHHH
Confidence 44566666677777888999998877665544333 478999999999999986 45578888877
Q ss_pred HHHHHHh
Q 028869 179 LGDILAT 185 (202)
Q Consensus 179 l~~l~~~ 185 (202)
.+++.+.
T Consensus 137 ar~l~~~ 143 (248)
T cd04728 137 AKRLEDA 143 (248)
T ss_pred HHHHHHc
Confidence 7777765
No 34
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=63.90 E-value=94 Score=26.62 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTA 60 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta 60 (202)
.+.++..++++...++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 567888899999999999999994
No 35
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=63.47 E-value=54 Score=26.77 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHH-----------------HHHHHHhCCCCCCCCceEEeeccCCCCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGD-----------------AIAEALSTGIIKSRDELFIASKLWCSDA 99 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~-----------------~l~~~~~~~~~~~R~~~~I~tK~~~~~~ 99 (202)
.+.++-.++.+.+-+.||.||-|.....+-..+-+ .|+.. ++ ....++|+|=. .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~----tgkPvIlSTG~----s 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK----TGKPVILSTGM----S 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH----hCCcEEEECCC----C
Confidence 67888999999999999999987654321111100 11111 10 33446666543 3
Q ss_pred ChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 100 ~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
+.+.|.++++...++-+ .++.++|+...+.. ..++ --++.|..|++.=- --||.|.|+....
T Consensus 124 tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~-------~~e~-------~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGN---EDLVLLHCVSSYPT-------PPED-------VNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp -HHHHHHHHHHHHHHCT-----EEEEEE-SSSS---------GGG---------TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCC-------ChHH-------cChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 44677777766644433 68999999854421 1111 12455555554422 4689999997544
Q ss_pred HHHHHh
Q 028869 180 GDILAT 185 (202)
Q Consensus 180 ~~l~~~ 185 (202)
..+...
T Consensus 186 ~~~~Av 191 (241)
T PF03102_consen 186 APIAAV 191 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 36
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=61.21 E-value=59 Score=25.73 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=40.7
Q ss_pred HHHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHHhCCCC
Q 028869 112 LENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIP 189 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~l~~~~~~~ 189 (202)
+..+|+|++=+++.. .|. ..+.+ ..+.+.+.. .+.++.+||. |-+++.+.++++.+ .
T Consensus 17 ~~~~GaD~iGfIf~~~SpR-----------------~V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~--~ 75 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKR-----------------HQTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNT--S 75 (207)
T ss_pred HHHcCCCEEEEecCCCCcc-----------------cCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhC--C
Confidence 456999999987433 221 12233 334444333 3568889995 88899999998855 5
Q ss_pred Ceeeeee
Q 028869 190 PAANQVS 196 (202)
Q Consensus 190 p~~~Q~e 196 (202)
++++|+.
T Consensus 76 ~d~vQLH 82 (207)
T PRK13958 76 INTIQLH 82 (207)
T ss_pred CCEEEEC
Confidence 6777764
No 37
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=60.79 E-value=1e+02 Score=26.50 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCceEEeecc--CCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q 028869 84 SRDELFIASKL--WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (202)
Q Consensus 84 ~R~~~~I~tK~--~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (202)
.+.-++|.+|+ .+.....+.+.+.+.+.++..|....+++.+..-. ....++.++.+.++.
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-----------------g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK-----------------GNGIDELLDKIKKAR 152 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC-----------------CCCHHHHHHHHHHHh
Confidence 35567889997 33333455666666666777776544565554332 123788889998887
Q ss_pred HcCCccEEEeCCCCHHHHHHHH
Q 028869 162 NLGYTKAIGVSNFSCKKLGDIL 183 (202)
Q Consensus 162 ~~G~ir~iGvSn~~~~~l~~l~ 183 (202)
+.+.+--+|.+|.....+-..+
T Consensus 153 ~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 153 NKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 7678888999999987765544
No 38
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=59.94 E-value=23 Score=32.12 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCcEE--eCCCCC---C-------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCC-ChhhHH----
Q 028869 43 KLAILEAMKLGYRHF--DTATLY---Q-------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDA-HRELVV---- 105 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~--Dta~~Y---g-------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i~---- 105 (202)
-+-+.+..+.|++.+ =||..| | +-+.+..+-++.+... -+..+|+++=+..=.. .+....
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~ 181 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGG 181 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCc
Confidence 355677778888876 355544 2 3344555556665422 5778899888743111 000000
Q ss_pred ------HHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 106 ------PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 106 ------~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
-.-++.-+|+.+.|+|.+. + +++++++..++.+++|+..+||+-.--.+-+
T Consensus 182 v~l~vEvd~~ri~kR~~~g~ld~~~----~-------------------~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~ 238 (546)
T PF01175_consen 182 VGLIVEVDPSRIEKRLEQGYLDEVT----D-------------------DLDEALARAKEARAKKEPLSIGLLGNAADLW 238 (546)
T ss_dssp EEEEEES-HHHHHHHHHTTSSSEEE----S-------------------SHHHHHHHHHHHHHTT--EEEEEES-HHHHH
T ss_pred eEEEEEECHHHHHHHHhCCCeeEEc----C-------------------CHHHHHHHHHHhhccCCeeEEEEeccHHHHH
Confidence 0122333577788998854 1 2789999999999999999999998888888
Q ss_pred HHHHHhCC-CCCeeeeeecccC
Q 028869 180 GDILATAK-IPPAANQVSFLKK 200 (202)
Q Consensus 180 ~~l~~~~~-~~p~~~Q~e~~~~ 200 (202)
+++++..- +.....|..+|.-
T Consensus 239 ~~l~~~~i~pDl~tDQTS~Hdp 260 (546)
T PF01175_consen 239 EELVERGIIPDLVTDQTSAHDP 260 (546)
T ss_dssp HHHHHTT---SEE---SSTT-T
T ss_pred HHHHHcCCCCCcccCCCccccc
Confidence 99988642 2345688888753
No 39
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=59.56 E-value=82 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.124 Sum_probs=27.7
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
...++ +|.+++|..++ . +..+.+.+......++.+|++++...++
T Consensus 69 a~~~~---~d~Vqlhg~e~-------------------~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 69 AEELG---LDVVQLHGDES-------------------P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHhcC---CCEEEECCCCC-------------------H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 34455 68888897531 1 2334444433456888999999876554
No 40
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=59.08 E-value=1.3e+02 Score=26.71 Aligned_cols=124 Identities=12% Similarity=0.019 Sum_probs=70.0
Q ss_pred CChhHHHHHHHHHHH-cCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMK-LGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 112 (202)
.+.++..++++..-+ .|++-+=.+..-. +...+-..|+.+.+ + ..-+.+.|.|++-... +..+...+-+.|
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~--I-phV~~IRI~TR~pvv~--P~RIT~ell~~L 212 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRA--I-PHVEVIRIGTRVPVVL--PQRITDELVAIL 212 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhh--c-CCCceEEEeecccccc--ccccCHHHHHHH
Confidence 356677777776655 4887543332211 34344444444311 1 0223477888853221 234445555566
Q ss_pred HHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEE------EeCCCCHHHHHHHHHh
Q 028869 113 ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI------GVSNFSCKKLGDILAT 185 (202)
Q Consensus 113 ~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~l~~l~~~ 185 (202)
++.+. -.+.+|...+.. -..++.++++.|++.|..-.. | .|-++..+.+|.+.
T Consensus 213 k~~~~---~~v~~h~nhp~E----------------it~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~~ 271 (417)
T TIGR03820 213 KKHHP---VWLNTHFNHPRE----------------ITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVHK 271 (417)
T ss_pred HhcCC---eEEEEeCCChHh----------------ChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHHH
Confidence 66653 344567543211 157899999999999975322 4 56778888877763
No 41
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=56.93 E-value=1.3e+02 Score=25.98 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCcEEeCCCCCCChH------------HHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHH
Q 028869 43 KLAILEAMKLGYRHFDTATLYQTEQ------------PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~Dta~~Yg~e~------------~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 110 (202)
.+.++...+.|+|.+..+-.-.+++ .+-++++.+.+.|. +.+-+..=..-+..+.+.+.+.++.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~----~~v~~Dli~GlPgqt~~~~~~~l~~ 178 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGF----SNLSIDLIYGLPTQSLSDFIVDLHQ 178 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 4556666678888886554332222 22234443322231 1222222234466788888888887
Q ss_pred HHHHcCCCceeEeeeccCCCCCCCCCCCCCc-cCCCCCCCH---HHHH-HHHHHHHHcCCccEEEeCCCCHH
Q 028869 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIK-KEDFLPMDF---KSVW-EAMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 111 sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~-~~~~~~~~~---~~~~-~~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
.+ .|+.+++.+|.+.- .+.++ .+... .......+. .+.+ .+.+.|.+.|. .++++|||...
T Consensus 179 ~~-~l~~~~is~y~l~~-~~gT~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~~ 244 (370)
T PRK06294 179 AI-TLPITHISLYNLTI-DPHTS---FYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAKP 244 (370)
T ss_pred HH-ccCCCeEEEeeeEe-cCCCh---HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeCC
Confidence 66 58999999988873 22221 00000 000000011 1222 34556778887 46899999854
No 42
>PLN02363 phosphoribosylanthranilate isomerase
Probab=56.40 E-value=70 Score=26.35 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHHhCCCCC
Q 028869 113 ENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIPP 190 (202)
Q Consensus 113 ~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~l~~~~~~~p 190 (202)
.++|+|++=+++.. .|.. ... +..+.+.+......++.+||. |-+++.+.++++.. .+
T Consensus 64 ~~~GaD~iGfIf~~~SpR~-----------------Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~--~l 123 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRS-----------------ISL-SVAKEISQVAREGGAKPVGVFVDDDANTILRAADSS--DL 123 (256)
T ss_pred HHcCCCEEEEecCCCCCCc-----------------CCH-HHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhc--CC
Confidence 35899999886432 2211 123 334444444433346789995 88888898888855 56
Q ss_pred eeeeee
Q 028869 191 AANQVS 196 (202)
Q Consensus 191 ~~~Q~e 196 (202)
.++|+.
T Consensus 124 d~VQLH 129 (256)
T PLN02363 124 ELVQLH 129 (256)
T ss_pred CEEEEC
Confidence 777874
No 43
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=55.37 E-value=1.3e+02 Score=25.41 Aligned_cols=142 Identities=11% Similarity=0.095 Sum_probs=76.8
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++..++++.+.+.|++.|..+..-. -...+-+.++...+.. .-..+.|+|.... +.+ .-..|...
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~---gi~~v~itTNG~l-------l~~-~~~~L~~~ 111 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALP---GIEDIALTTNGLL-------LAR-HAKDLKEA 111 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcC---CCCeEEEEeCchh-------HHH-HHHHHHHc
Confidence 6788899999999999998886543111 1112333444321101 1225677775321 122 23446666
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCCC--CCCHHHHHHHHHHHHHcCCc--c--EEEeCCCCHHHHHHHHHhCC-C
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFL--PMDFKSVWEAMEECQNLGYT--K--AIGVSNFSCKKLGDILATAK-I 188 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~G~i--r--~iGvSn~~~~~l~~l~~~~~-~ 188 (202)
|++.+-+ -++.+++..- ..+. ...+..++++++.+++.|.- + .+-+.+.+.+++.++++.+. .
T Consensus 112 gl~~v~I-Sld~~~~~~~---------~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 112 GLKRVNV-SLDSLDPERF---------AKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred CCCeEEE-ecccCCHHHh---------heeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 7655442 2343322110 1111 12588999999999999863 2 23445677888888877663 3
Q ss_pred CCeeeeeeccc
Q 028869 189 PPAANQVSFLK 199 (202)
Q Consensus 189 ~p~~~Q~e~~~ 199 (202)
...+.=+++.|
T Consensus 182 gv~~~~ie~mp 192 (334)
T TIGR02666 182 GVTLRFIELMP 192 (334)
T ss_pred CCeEEEEeccC
Confidence 33333334443
No 44
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=55.33 E-value=1.5e+02 Score=26.91 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCcc
Q 028869 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK 142 (202)
Q Consensus 63 Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~ 142 (202)
+|+++.+-++|++..+.. +.+-++|.+-+.+ +-|-..++...+.++.+.+.++.++.|.....
T Consensus 67 ~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC~s-----elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~--------- 129 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF---KPDLIVVTPSCTS-----SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK--------- 129 (511)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEEeCCChH-----HHhccCHHHHHHHhccCCCcEEEecCCCcccc---------
Confidence 677888888888765432 3444566654322 22333334444445544578888888864321
Q ss_pred CCCCCCCHHHHHHHHHH-H----------HHcCCccEEEeCCC------CHHHHHHHHHhCCCCC
Q 028869 143 EDFLPMDFKSVWEAMEE-C----------QNLGYTKAIGVSNF------SCKKLGDILATAKIPP 190 (202)
Q Consensus 143 ~~~~~~~~~~~~~~l~~-l----------~~~G~ir~iGvSn~------~~~~l~~l~~~~~~~p 190 (202)
. ......+++++.+ + .+++.|-=||.++. +...+.++++..++.+
T Consensus 130 -~--~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 130 -E--NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred -h--hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 0 0012223332222 1 12456777898763 5577888888776644
No 45
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=54.58 E-value=1.4e+02 Score=25.69 Aligned_cols=125 Identities=11% Similarity=0.121 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCcEEeCCCCCCChH------------HHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 028869 44 LAILEAMKLGYRHFDTATLYQTEQ------------PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg~e~------------~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 111 (202)
+.++...++|+|.+..+-.-++++ .+-++++.+.+.|. +.+-+..=+.-+..+.+.+.+.++..
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~----~~v~~dli~GlPgqt~~~~~~tl~~~ 184 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGF----EHVNLDLIYGTPGESDDDWRASLDAA 184 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CcEEEEEeccCCCCCHHHHHHHHHHH
Confidence 444444566888776554433222 22334443322232 12322222344667778888877755
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCC---HHHHHHHH-HHHHHcCCccEEEeCCCCHH
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMD---FKSVWEAM-EECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-~~l~~~G~ir~iGvSn~~~~ 177 (202)
+ .++.+++.++.+. +.+.++-.... ..+.+...+ ..+.++.+ +.|.+.|. .++++|||...
T Consensus 185 ~-~l~~~~i~~y~l~-~~~gT~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa~~ 249 (375)
T PRK05628 185 L-EAGVDHVSAYALI-VEDGTALARRV--RRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWARP 249 (375)
T ss_pred H-hcCCCEEEeeeee-cCCCChHHHHh--hcCCCCCCChHHHHHHHHHHHHHHHHcCC-CeeeeccccCC
Confidence 4 5899999988876 32322200000 000011111 22344444 44566676 57899999853
No 46
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=52.98 E-value=1.5e+02 Score=25.41 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCcEEeCCCCCC------------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHH
Q 028869 43 KLAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~Dta~~Yg------------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 110 (202)
.+.++...++|+|.+-.+-.-. +...+-++++.+.+.|. +.+-+..=+.-+..+.+.+.+.++.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~----~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGF----ENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CEEEEEeecCCCCCCHHHHHHHHHH
Confidence 3455666677999884433221 22233345555433332 1222333334456777888888876
Q ss_pred HHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHH-HHHHHHHHcCCccEEEeCCCCH
Q 028869 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW-EAMEECQNLGYTKAIGVSNFSC 176 (202)
Q Consensus 111 sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvSn~~~ 176 (202)
.+ +++.+++.++.+.- .+.++ .+..-.. ..+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 174 ~~-~l~~~~is~y~L~~-~~gT~---l~~~~~~---~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 174 AK-ELPINHLSAYSLTI-EENTP---FFEKNHK---KKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred HH-hcCCCEEEecccee-cCCCh---hHHhhhc---CCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 54 59999999988763 22222 0000000 00122333 34566777786 5799999985
No 47
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=52.62 E-value=34 Score=29.88 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCceEEeeccC----------CCCCCh----hhHHHHHHHHHHHcCCCceeEeeeccCCC
Q 028869 65 TEQPLGDAIAEALSTGIIKSRDELFIASKLW----------CSDAHR----ELVVPALQKSLENLQLEYIDLYVIHWPVS 130 (202)
Q Consensus 65 ~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~----------~~~~~~----~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~ 130 (202)
++..+.+.+++. .+.-+||.||+- +..++. +.|++.+.+.|++-|+....+|++-..+.
T Consensus 129 ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 566778888765 456778899982 223443 45677788888888999999999987653
No 48
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=51.85 E-value=1.3e+02 Score=24.55 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=29.7
Q ss_pred ceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHH
Q 028869 27 LGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAE 75 (202)
Q Consensus 27 lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~ 75 (202)
+.|++...+..+++...++++.+.+.|+..|=.++..| ....+.+.++.
T Consensus 130 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~ 180 (268)
T cd07940 130 VEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKK 180 (268)
T ss_pred EEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 33555544446677777777777777777775555566 34445554444
No 49
>PRK00208 thiG thiazole synthase; Reviewed
Probab=50.10 E-value=1.4e+02 Score=24.51 Aligned_cols=129 Identities=19% Similarity=0.107 Sum_probs=77.2
Q ss_pred cccceeeCCcCCCCChhHHHHHHHHHH-HcCCcEEeCCCCC----CChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCC
Q 028869 24 MPVLGLGTAASPFSGSETTKLAILEAM-KLGYRHFDTATLY----QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD 98 (202)
Q Consensus 24 v~~lglG~~~~~~~~~~~~~~~l~~A~-~~Gi~~~Dta~~Y----g~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~ 98 (202)
=|+|-+||..+. +.+ ++..|+ .+|...+-.|-.- ..+..+-+.| ++..+.+.-.. ...
T Consensus 10 ~SRl~~Gtgky~--s~~----~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i----------~~~~~~~lpNT-aG~ 72 (250)
T PRK00208 10 SSRLLLGTGKYP--SPQ----VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLL----------PPLGVTLLPNT-AGC 72 (250)
T ss_pred eccceEecCCCC--CHH----HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhc----------cccCCEECCCC-CCC
Confidence 378999999874 333 444454 3455444332211 1111111222 33333332111 123
Q ss_pred CChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHH
Q 028869 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (202)
Q Consensus 99 ~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 178 (202)
.+.++-.+..+-..+.++++++-|=.+..+....| +..+++++.++|.++|.+ -+-+|+-++..
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llp---------------d~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ 136 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLP---------------DPIETLKAAEILVKEGFV-VLPYCTDDPVL 136 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCc---------------CHHHHHHHHHHHHHCCCE-EEEEeCCCHHH
Confidence 44566666677777888999888877665543333 478999999999999986 45578888887
Q ss_pred HHHHHHh
Q 028869 179 LGDILAT 185 (202)
Q Consensus 179 l~~l~~~ 185 (202)
.+++.+.
T Consensus 137 ak~l~~~ 143 (250)
T PRK00208 137 AKRLEEA 143 (250)
T ss_pred HHHHHHc
Confidence 7777765
No 50
>PRK02399 hypothetical protein; Provisional
Probab=49.80 E-value=63 Score=28.55 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEE--------------Ee
Q 028869 106 PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI--------------GV 171 (202)
Q Consensus 106 ~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i--------------Gv 171 (202)
.++....+.|.-...|.+.+|.-... + ++||+|+++|.+..+ |+
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G--------------------G--raME~Li~~G~~~gVlDlTttEv~d~l~GGv 256 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG--------------------G--RAMEKLIDSGLIAGVLDLTTTEVCDELFGGV 256 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc--------------------h--HHHHHHHHcCCceEEEEcchHHHHHHHhCcC
Confidence 44444555554444799999975431 2 899999999999877 88
Q ss_pred CCCCHHHHHHHHHhC
Q 028869 172 SNFSCKKLGDILATA 186 (202)
Q Consensus 172 Sn~~~~~l~~l~~~~ 186 (202)
.+..++.+..+.+..
T Consensus 257 ~sagp~Rl~Aa~~~g 271 (406)
T PRK02399 257 LAAGPDRLEAAARTG 271 (406)
T ss_pred ccCCccHHHHHHHcC
Confidence 888888888887643
No 51
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=49.78 E-value=1.6e+02 Score=24.96 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHH-HcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHH
Q 028869 38 GSETTKLAILEAM-KLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (202)
Q Consensus 38 ~~~~~~~~l~~A~-~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~ 113 (202)
+.++..+++...- ..|++.+-.+..-. ....+.+.+... ..++.-+.+.|.||+. ...+..+.+.+-+.|+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l---~~i~~~~~iri~tr~~--~~~p~rit~el~~~L~ 200 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLL---EQIPHLKRLRIHTRLP--VVIPDRITSGLCDLLA 200 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHH---HhCCCCcEEEEecCcc--eeeHHHhhHHHHHHHH
Confidence 3455566565544 34887665554211 333455555443 2111345677888753 2233466666666777
Q ss_pred HcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEE-eC----CCCHHHHHHHHHhC
Q 028869 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG-VS----NFSCKKLGDILATA 186 (202)
Q Consensus 114 ~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG-vS----n~~~~~l~~l~~~~ 186 (202)
..|...+ +++|-..+.. . -.++.++++.|++.|..-.+- +- |-+.+.+.++.+..
T Consensus 201 ~~~~~~~--~~~h~dh~~E---------------i-~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l 260 (321)
T TIGR03821 201 NSRLQTV--LVVHINHANE---------------I-DAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERL 260 (321)
T ss_pred hcCCcEE--EEeeCCChHh---------------C-cHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHH
Confidence 7775443 2345322110 0 246888999999999642221 11 33677777776643
No 52
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=49.38 E-value=1.7e+02 Score=25.17 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=71.3
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHH-----------------HHHHHHhCCCCCCCCceEEeeccCCCCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGD-----------------AIAEALSTGIIKSRDELFIASKLWCSDA 99 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~-----------------~l~~~~~~~~~~~R~~~~I~tK~~~~~~ 99 (202)
.+.+...++.+.|-+.|+-+|-|-..+.+-..+-+ .|+ ++++ .-+.+.++|=+ .
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik-~iA~----~~kPiIlSTGm----a 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIK-YIAK----KGKPIILSTGM----A 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHH-HHHh----cCCCEEEEccc----c
Confidence 67788889999999999999977655532111100 011 1111 23356666654 2
Q ss_pred ChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 100 ~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
+-+.+.++++..+++=+ .|+.++|+-..+ |.+.+ +. . +++|..|.+.= ---||+|.|+..-+
T Consensus 158 ~~~ei~~av~~~r~~g~---~~i~LLhC~s~Y-Pap~e---------d~-N---L~~i~~l~~~F-n~~vGlSDHT~g~~ 219 (347)
T COG2089 158 TIEEIEEAVAILRENGN---PDIALLHCTSAY-PAPFE---------DV-N---LKAIPKLAEAF-NAIVGLSDHTLGIL 219 (347)
T ss_pred cHHHHHHHHHHHHhcCC---CCeEEEEecCCC-CCCHH---------Hh-h---HHHHHHHHHHh-CCccccccCccchh
Confidence 33677777776665533 399999987543 32211 11 1 33444444332 33599999998866
Q ss_pred HHHHHhC
Q 028869 180 GDILATA 186 (202)
Q Consensus 180 ~~l~~~~ 186 (202)
..+...+
T Consensus 220 a~l~AvA 226 (347)
T COG2089 220 APLAAVA 226 (347)
T ss_pred HHHHHHH
Confidence 6666544
No 53
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=49.22 E-value=75 Score=25.19 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=39.4
Q ss_pred HHHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHHhCCCC
Q 028869 112 LENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIP 189 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~l~~~~~~~ 189 (202)
+..+|+|++=+++.. .|.. .+. +..+.+.... .+.++.+||. |-+++.+.++++.. .
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~-----------------V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~--~ 77 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRY-----------------VSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETV--P 77 (210)
T ss_pred HHHcCCCEEEEccCCCCCCc-----------------CCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhc--C
Confidence 346899998886422 2211 122 2333333332 3568899997 66788888888855 5
Q ss_pred Ceeeeee
Q 028869 190 PAANQVS 196 (202)
Q Consensus 190 p~~~Q~e 196 (202)
+.++|+.
T Consensus 78 ~d~vQLH 84 (210)
T PRK01222 78 LDLLQLH 84 (210)
T ss_pred CCEEEEC
Confidence 6777774
No 54
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=49.09 E-value=74 Score=24.89 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHH--HHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHH
Q 028869 38 GSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLG--DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLEN 114 (202)
Q Consensus 38 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g--~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 114 (202)
++++.....+.|.+.|..++=|+..|. .-..++ +.+++.+ +. -+-.|......+.+...+-++....+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-------~~--~v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-------GG--RVGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CC--CceEEEeCCCCCHHHHHHHHHhChhh
Confidence 478888999999999999999998885 112222 3344331 11 13455544444667777777776777
Q ss_pred cCC
Q 028869 115 LQL 117 (202)
Q Consensus 115 Lg~ 117 (202)
+|+
T Consensus 200 iG~ 202 (203)
T cd00959 200 IGT 202 (203)
T ss_pred ccC
Confidence 775
No 55
>PRK03995 hypothetical protein; Provisional
Probab=48.81 E-value=1.4e+02 Score=24.86 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=52.1
Q ss_pred CccccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC----ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC
Q 028869 22 RRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS 97 (202)
Q Consensus 22 ~~v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~ 97 (202)
-..+.||||...+. .+--+.|++.++.+=...+.|. ++..+-+++.+. .. .-+.++|--|-
T Consensus 180 ~~~~~iGiGGgHYa-------pr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks---~~--~~~~~~id~K~--- 244 (267)
T PRK03995 180 KFKPAIGIGGGHYA-------PKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKS---TP--EIDRIVIDWKG--- 244 (267)
T ss_pred CCCEEEEECCCCcc-------HHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhc---cC--CCCEEEEecCC---
Confidence 45678899988764 3445777788888777788886 455566666543 11 22234443342
Q ss_pred CCChhhHHHHHHHHHHHcCCCc
Q 028869 98 DAHRELVVPALQKSLENLQLEY 119 (202)
Q Consensus 98 ~~~~~~i~~~~~~sL~~Lg~~~ 119 (202)
-+...++.+.+.|+.+|++.
T Consensus 245 --~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 245 --VKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred --CCHHHHHHHHHHHHHCCCeE
Confidence 22567888888999998764
No 56
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=47.88 E-value=1e+02 Score=30.13 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=40.8
Q ss_pred ceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhC
Q 028869 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 119 ~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~ 186 (202)
...++++..|.... ++......|+.+.++++.|+ +|=+.+|+.++.+.+....
T Consensus 716 ~p~vi~LDEPstGm-------------DP~arr~lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 716 DPSVILLDEPSTGL-------------DPKARRHLWDIIARLRKNGK--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred CCCEEEecCCCCCC-------------CHHHHHHHHHHHHHHHhcCC--EEEEEcCCHHHHHHHhhhh
Confidence 45666777664321 12335779999999999999 8999999999999998855
No 57
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=46.95 E-value=1.5e+02 Score=26.30 Aligned_cols=132 Identities=19% Similarity=0.262 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 109 (202)
.+..++.+++..|+++|- ...|+ +.+.+.+.+.+-+...+ ..+++|+++-+ ..+++
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC----------~qAIe 140 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC----------SQAIE 140 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc----------hHHHH
Confidence 566778899999999883 45676 23344444433222223 77889988653 23344
Q ss_pred HHHHHcCCCceeEeeeccCCCCC---CCC-CCCCCccCC-CCCCCHHHHHHHHHHHHHcCCccEEEeCC--------CCH
Q 028869 110 KSLENLQLEYIDLYVIHWPVSSK---PGS-YEFPIKKED-FLPMDFKSVWEAMEECQNLGYTKAIGVSN--------FSC 176 (202)
Q Consensus 110 ~sL~~Lg~~~vDl~~lh~p~~~~---~~~-~~~~~~~~~-~~~~~~~~~~~~l~~l~~~G~ir~iGvSn--------~~~ 176 (202)
-.+..|---.-.+++ -+|...- .+. .....+..+ +.+.+++--++.+|.|.++. +.+|=|-| |+.
T Consensus 141 ~~i~~LA~p~aNILl-PrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DEN-T~AivviNP~NPcGnVys~ 218 (447)
T KOG0259|consen 141 LAISSLANPGANILL-PRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADEN-TVAIVVINPNNPCGNVYSE 218 (447)
T ss_pred HHHHHhcCCCCceec-CCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccC-eeEEEEeCCCCCCcccccH
Confidence 444444322223332 2232100 000 000000001 11122344467889999884 45665533 888
Q ss_pred HHHHHHHHhCC
Q 028869 177 KKLGDILATAK 187 (202)
Q Consensus 177 ~~l~~l~~~~~ 187 (202)
++++++.+.++
T Consensus 219 ~HL~kiae~A~ 229 (447)
T KOG0259|consen 219 DHLKKIAETAK 229 (447)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 58
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=46.43 E-value=24 Score=23.81 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 028869 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDIL 183 (202)
Q Consensus 104 i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~ 183 (202)
+=..-+.....||....|+..+..-.++. ..+.+++.|..-+++. | .+.+...+.+++
T Consensus 12 LG~~W~~Lar~Lgls~~~I~~i~~~~p~~----------------l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~aL 69 (83)
T cd08319 12 LGPEWEQVLLDLGLSQTDIYRCKENHPHN----------------VQSQIVEALVKWRQRF-----G-KKATVQSLIQSL 69 (83)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHhc-----C-CCCcHHHHHHHH
Confidence 33455667788999988887777532221 1466788888777753 3 466789999999
Q ss_pred HhCCCCCeeeee
Q 028869 184 ATAKIPPAANQV 195 (202)
Q Consensus 184 ~~~~~~p~~~Q~ 195 (202)
+.+++.|.+.|+
T Consensus 70 ~~~~~~~~~~~~ 81 (83)
T cd08319 70 KAVEVDPSVLQF 81 (83)
T ss_pred HHcCCCHHHHHh
Confidence 999988887664
No 59
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=46.27 E-value=98 Score=24.85 Aligned_cols=72 Identities=17% Similarity=0.057 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC----ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 112 (202)
.+.++..++.+.+.++|..|+=|+..|+ +.+.+....+.. + .+ +..|....-.+.+...+-++..-
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~---~---~~----~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV---G---PR----VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh---C---CC----ceEEeeCCcCCHHHHHHHHHcCc
Confidence 4678889999999999999999999884 344443333322 2 12 34455555566677777777766
Q ss_pred HHcCCC
Q 028869 113 ENLQLE 118 (202)
Q Consensus 113 ~~Lg~~ 118 (202)
.++|++
T Consensus 203 ~riGtS 208 (221)
T PRK00507 203 TRLGTS 208 (221)
T ss_pred ceEccC
Confidence 777765
No 60
>PLN02321 2-isopropylmalate synthase
Probab=46.05 E-value=2.6e+02 Score=26.32 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=41.7
Q ss_pred cceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCceEEeeccCC
Q 028869 26 VLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWC 96 (202)
Q Consensus 26 ~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~ 96 (202)
.+.|++.-.+..+++.+.++++.+.+.|...|-.++..| .-..+++.++...+. .. .++.+.|..++++
T Consensus 226 ~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~-~~-~~~~v~i~vH~HN 296 (632)
T PLN02321 226 DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKAN-TP-GIENVIISTHCQN 296 (632)
T ss_pred eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHh-cC-CCCCceEEEEeCC
Confidence 456666544457788888888888888888775555555 344455555544221 10 2335667776654
No 61
>PLN02775 Probable dihydrodipicolinate reductase
Probab=45.86 E-value=1.4e+02 Score=25.14 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 028869 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (202)
Q Consensus 108 ~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~ 187 (202)
+++.|..+.-++.|++++..- . .+.+.+.++.+.+.|+--=+|.+.|+.++++++.+..+
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT---~-----------------P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~ 127 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT---L-----------------PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESG 127 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC---C-----------------hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCC
Confidence 445554444457887666642 1 46788999999999998899999999999998877434
Q ss_pred C
Q 028869 188 I 188 (202)
Q Consensus 188 ~ 188 (202)
+
T Consensus 128 i 128 (286)
T PLN02775 128 V 128 (286)
T ss_pred c
Confidence 3
No 62
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=45.39 E-value=60 Score=29.19 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC-CCChhhHH--H--------HHHHHHHHcCCCceeEeeeccCCCCCC
Q 028869 65 TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAHRELVV--P--------ALQKSLENLQLEYIDLYVIHWPVSSKP 133 (202)
Q Consensus 65 ~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~-~~~~~~i~--~--------~~~~sL~~Lg~~~vDl~~lh~p~~~~~ 133 (202)
+-+.+.++-++.+... -+..+++++-+..- ...+-.+. . .-.+.-+||.+.|+|..- .
T Consensus 149 TyeT~~~~~r~h~~gd---L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a---~----- 217 (561)
T COG2987 149 TYETFAEAGRQHFGGD---LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA---E----- 217 (561)
T ss_pred hHHHHHHHHHHhcCCC---ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc---C-----
Confidence 4444555555554322 46677887776321 11110100 0 012223577888888621 1
Q ss_pred CCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCC-CCCeeeeeeccc
Q 028869 134 GSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK-IPPAANQVSFLK 199 (202)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~-~~p~~~Q~e~~~ 199 (202)
+++++++-.++..++|+-.+||+..--.+-+.++++..- +..+..|..+|.
T Consensus 218 ---------------~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHd 269 (561)
T COG2987 218 ---------------TLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHD 269 (561)
T ss_pred ---------------CHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccC
Confidence 278999999999999999999999988899999998653 234557887764
No 63
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=45.34 E-value=37 Score=24.09 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ 64 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 64 (202)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4667788999999999999999999985
No 64
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=45.33 E-value=1.1e+02 Score=21.90 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcCC---CceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHH
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL---EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~---~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (202)
+|=.+.|+-|+....-.+..+++.+.+....+.. ...|++++-.+.... .++.+..+.|..|
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~---------------~~~~~l~~~l~~l 111 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE---------------CNYEQFLQELEQL 111 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc---------------CCHHHHHHHHHHH
Confidence 4555667777666667778888888888876532 357999998875432 3477888888877
Q ss_pred HHc
Q 028869 161 QNL 163 (202)
Q Consensus 161 ~~~ 163 (202)
.++
T Consensus 112 l~k 114 (122)
T PRK03031 112 LIQ 114 (122)
T ss_pred HHH
Confidence 665
No 65
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=45.19 E-value=1.8e+02 Score=24.17 Aligned_cols=39 Identities=5% Similarity=-0.108 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAE 75 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~ 75 (202)
.+++...++++.+.+.|+..|-.++..| .-..+.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~ 184 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISD 184 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 4566666666666666666554444444 33334444443
No 66
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.04 E-value=90 Score=25.75 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=38.0
Q ss_pred CceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHH
Q 028869 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (202)
Q Consensus 118 ~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~ 184 (202)
...|++++.-|.... +.....+.++-|.+|+++|+. |=+.+|+...+.+..+
T Consensus 156 ~~p~lllLDEP~~gv-------------D~~~~~~i~~lL~~l~~eg~t--Il~vtHDL~~v~~~~D 207 (254)
T COG1121 156 QNPDLLLLDEPFTGV-------------DVAGQKEIYDLLKELRQEGKT--VLMVTHDLGLVMAYFD 207 (254)
T ss_pred cCCCEEEecCCcccC-------------CHHHHHHHHHHHHHHHHCCCE--EEEEeCCcHHhHhhCC
Confidence 567888888775432 123356789999999999886 8889999777666544
No 67
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=44.86 E-value=2.1e+02 Score=24.90 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=70.3
Q ss_pred CChhHHHHHHHHHHHcCCc-EEeCCCCCCChHHHHHHHHHHHhC-CCCCCCCceEEeeccCC--------CCCChhhHHH
Q 028869 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALST-GIIKSRDELFIASKLWC--------SDAHRELVVP 106 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~-~~Dta~~Yg~e~~~g~~l~~~~~~-~~~~~R~~~~I~tK~~~--------~~~~~~~i~~ 106 (202)
.+.+......+.+.+.|++ +++|... .+...+-++++...+. .. .+.-..+...+-. ..+.++.+++
T Consensus 74 ~~~e~~~~~~~~~~~~GvTt~l~t~~t-~~~~~~~~~l~~~~~~~~~--~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~ 150 (380)
T TIGR00221 74 ASFETLEIMSERLPKSGCTSFLPTLIT-QPDENIKQAVKNMREYLAK--EKNAQALGLHLEGPFLSPEKKGAHPPEYIRE 150 (380)
T ss_pred CCHHHHHHHHHHHHhcCeeEEeeeccC-CCHHHHHHHHHHHHHHHhc--cCCceeeeEeeecCcCChhhcCCCCHHHhhC
Confidence 3456677777888899998 6666533 2333444544433110 00 1111233334311 1233334332
Q ss_pred ----HHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHH
Q 028869 107 ----ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (202)
Q Consensus 107 ----~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l 182 (202)
.+++.++.-+ +.+-++.+- |+. ....+.++.|+++|.+-++|=||-+.+++.++
T Consensus 151 p~~~~~~~~~~~~~-~~i~~vTlA-PE~--------------------~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a 208 (380)
T TIGR00221 151 PDVELFKKFLCEAG-GVITKVTLA-PEE--------------------DQHFELIRHLKDAGIIVSAGHTNATYELAKAA 208 (380)
T ss_pred cCHHHHHHHHHhcC-CCEEEEEEC-CCC--------------------CChHHHHHHHHHCCeEEEeeCCCCCHHHHHHH
Confidence 2333333222 334444433 431 23568899999999999999999999999999
Q ss_pred HHhC
Q 028869 183 LATA 186 (202)
Q Consensus 183 ~~~~ 186 (202)
++.+
T Consensus 209 ~~~G 212 (380)
T TIGR00221 209 FKAG 212 (380)
T ss_pred HHcC
Confidence 8865
No 68
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=44.45 E-value=89 Score=27.62 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEE--------------EeC
Q 028869 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI--------------GVS 172 (202)
Q Consensus 107 ~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i--------------GvS 172 (202)
+++...+.|.-.-.+.+.+|.-... + ++||+|+++|.+..+ |+.
T Consensus 199 ~V~~~~~~Le~~G~Ev~VFHAtG~G--------------------G--~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~ 256 (403)
T PF06792_consen 199 CVDAIRERLEEEGYEVLVFHATGTG--------------------G--RAMERLIREGQFDGVLDLTTTELADELFGGVL 256 (403)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCc--------------------h--HHHHHHHHcCCcEEEEECcHHHHHHHHhCCCC
Confidence 3444444444344799999976421 2 899999999999877 888
Q ss_pred CCCHHHHHHHHHhC
Q 028869 173 NFSCKKLGDILATA 186 (202)
Q Consensus 173 n~~~~~l~~l~~~~ 186 (202)
.-.++.++.+.+..
T Consensus 257 sagp~Rl~AA~~~G 270 (403)
T PF06792_consen 257 SAGPDRLEAAARAG 270 (403)
T ss_pred CCCchHHHHHHHcC
Confidence 88888888887743
No 69
>TIGR00035 asp_race aspartate racemase.
Probab=44.01 E-value=1.4e+02 Score=23.77 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHH-H
Q 028869 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK-L 179 (202)
Q Consensus 101 ~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~-l 179 (202)
.+.+++-++..-.+.+.++++.+.++.|+..+. ..+- ..+++ +.....+.+.++.|.+.| +..|-++..+... +
T Consensus 16 ~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr--~~~~-~~~~~-~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~ 90 (229)
T TIGR00035 16 AELFRRINEKTKAKRDQEHPAEVLFNNPNIPDR--TAYI-LGRGE-DRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHH--HHHH-hcCCc-chHHHHHHHHHHHHHHcC-CCEEEECCccHHHHH
Confidence 345555566666678889999999998853221 0000 00000 112345666677776655 7999999888665 5
Q ss_pred HHHHHhCCC
Q 028869 180 GDILATAKI 188 (202)
Q Consensus 180 ~~l~~~~~~ 188 (202)
+++.+...+
T Consensus 91 ~~l~~~~~i 99 (229)
T TIGR00035 91 EDIQKAIGI 99 (229)
T ss_pred HHHHHhCCC
Confidence 555554543
No 70
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.38 E-value=87 Score=23.95 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeec-cCCCCCChhhHHHHHHHHHHHcC
Q 028869 39 SETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASK-LWCSDAHRELVVPALQKSLENLQ 116 (202)
Q Consensus 39 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK-~~~~~~~~~~i~~~~~~sL~~Lg 116 (202)
++...-.+++|-+.||.+|=.|..+| +-..+-+.+. | .- ++++.|. .....-+...+.+.++.-|+..|
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~l-kvVvVthh~Gf~e~g~~e~~~E~~~~L~erG 83 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---DL-KVVVVTHHAGFEEKGTQEMDEEVRKELKERG 83 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---Cc-eEEEEEeecccccCCceecCHHHHHHHHHcC
Confidence 34455667788899999999999887 3222222221 1 11 2444443 33334444677888899999998
Q ss_pred CC
Q 028869 117 LE 118 (202)
Q Consensus 117 ~~ 118 (202)
.+
T Consensus 84 a~ 85 (186)
T COG1751 84 AK 85 (186)
T ss_pred ce
Confidence 64
No 71
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=43.33 E-value=2.6e+02 Score=25.41 Aligned_cols=68 Identities=7% Similarity=0.041 Sum_probs=39.2
Q ss_pred ceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCceEEeeccCC
Q 028869 27 LGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWC 96 (202)
Q Consensus 27 lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~ 96 (202)
+.|++......+++.+.++++.+.+.|...|-.++..| .-..+.+.++...+ ... .++++.|..+.++
T Consensus 133 v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~-~~~-~~~~v~l~~H~HN 202 (494)
T TIGR00973 133 VEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRE-NVP-NIDKAILSVHCHN 202 (494)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHH-hhc-cccCceEEEEeCC
Confidence 55666554457778888888888888887776555555 34444444443321 110 2334556666543
No 72
>PRK05660 HemN family oxidoreductase; Provisional
Probab=42.70 E-value=2.2e+02 Score=24.59 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCcEEeCCCCCCC------------hHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 028869 44 LAILEAMKLGYRHFDTATLYQT------------EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg~------------e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 111 (202)
+.++...++|+|.+-.+-.-.+ ...+-++++.+.+.|. . .+-+..-..-+..+.+.+.+.++..
T Consensus 108 e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~--~--~v~~dli~Glpgqt~~~~~~~l~~~ 183 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGL--R--SFNLDLMHGLPDQSLEEALDDLRQA 183 (378)
T ss_pred HHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC--C--eEEEEeecCCCCCCHHHHHHHHHHH
Confidence 5556666778887744433222 2222234444433342 1 1223333344667788888888876
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHH----HHHHHHHcCCccEEEeCCCCHHH
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWE----AMEECQNLGYTKAIGVSNFSCKK 178 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~~G~ir~iGvSn~~~~~ 178 (202)
++ ++++++.++.+-- .+.++ .+. ..... .+.++.|+ +.+.|.+.|. ..+++|||....
T Consensus 184 ~~-l~p~~is~y~l~~-~~gT~---l~~-~~~~~--~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~~~ 245 (378)
T PRK05660 184 IA-LNPPHLSWYQLTI-EPNTL---FGS-RPPVL--PDDDALWDIFEQGHQLLTAAGY-QQYETSAYAKPG 245 (378)
T ss_pred Hh-cCCCeEEeeccEe-ccCCc---ccc-cCCCC--cCHHHHHHHHHHHHHHHHHcCC-cEeecccccCCC
Confidence 55 9999999987762 12211 000 00000 11223333 3345667787 458999998643
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=42.56 E-value=50 Score=26.91 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=46.2
Q ss_pred eeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 028869 91 ASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (202)
Q Consensus 91 ~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (202)
-||++-..+.-+.-++.+++-.+.+| +-++.+.+-.- ..|+-|-.|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfG-eI~eavvitd~---------------------------------~t~rskGyG 57 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFG-EIVEAVVITDK---------------------------------NTGRSKGYG 57 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhC-ceEEEEEEecc---------------------------------CCcccccee
Confidence 35665444444445566777777888 77888777622 126777888
Q ss_pred eCCCC-HHHHHHHHHhCCCCCeeeeeecccCcC
Q 028869 171 VSNFS-CKKLGDILATAKIPPAANQVSFLKKYL 202 (202)
Q Consensus 171 vSn~~-~~~l~~l~~~~~~~p~~~Q~e~~~~~~ 202 (202)
+.+|. .+...++++-...-++=.-.+||.+||
T Consensus 58 fVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 58 FVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 88886 455555555332222234566666654
No 74
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=41.75 E-value=2.2e+02 Score=24.29 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCCcee
Q 028869 43 KLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYID 121 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vD 121 (202)
.++-...|..|.+-=+.|..+| +...+.+-|+.+.++|+ +-|..+ .+...--.+.++++ +++|++++.
T Consensus 16 ~~~A~lYY~~gltQ~eIA~~LgiSR~~v~rlL~~Ar~~Gi------V~I~i~--~~~~~~~~Le~~L~---~~fgL~~a~ 84 (321)
T COG2390 16 ARAAWLYYVEGLTQSEIAERLGISRATVSRLLAKAREEGI------VKISIN--SPVEGCLELEQQLK---ERFGLKEAI 84 (321)
T ss_pred HHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCe------EEEEeC--CCCcchHHHHHHHH---HhcCCCeEE
Confidence 3444444688999889999999 89999999999866665 344444 22221122333333 688988777
Q ss_pred EeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhC
Q 028869 122 LYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 122 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~ 186 (202)
++-...++.... ...--..+.+.|+++.+.|.+ |||+ |. ..+..+.+..
T Consensus 85 VVp~~~~~~~~~------------~~~lg~aaA~~l~~~l~~gdv--igV~-wG-rTv~a~~~~l 133 (321)
T COG2390 85 VVPSDSDADDSI------------LRRLGRAAAQYLESLLKPGDV--IGVG-WG-RTLSAVVDNL 133 (321)
T ss_pred EEcCCCCCchHH------------HHHHHHHHHHHHHHhCCCCCE--EEEe-cc-HHHHHHHHhc
Confidence 755433321110 000124467889999999996 7776 54 3444555543
No 75
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=41.25 E-value=1.5e+02 Score=22.27 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHc--CCccEEEeCCCC
Q 028869 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYTKAIGVSNFS 175 (202)
Q Consensus 98 ~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~ 175 (202)
..+.+.+.+.+++.-+.+|++ ++++|-.. -.+..+.+++..++ |.|-.=|--+|.
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~----------------------EGelId~i~~a~~~~dgiIINpga~THt 81 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSNH----------------------EGELIDWIHEARGDVAGIVINPGAYTHT 81 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc----------------------HHHHHHHHHHhhhcCCEEEEcchHHhhh
Confidence 345688999999999999974 66666432 34677788777543 566556778888
Q ss_pred HHHHHHHHHhCCCCCeeeeeeccc
Q 028869 176 CKKLGDILATAKIPPAANQVSFLK 199 (202)
Q Consensus 176 ~~~l~~l~~~~~~~p~~~Q~e~~~ 199 (202)
.-.+..+++...+ .++.+-+|.
T Consensus 82 SiAl~DAl~~~~~--P~VEVHiSN 103 (146)
T PRK13015 82 SVAIRDALAALEL--PVIEVHISN 103 (146)
T ss_pred HHHHHHHHHcCCC--CEEEEEcCC
Confidence 8888888886654 344444443
No 76
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=41.08 E-value=1e+02 Score=28.10 Aligned_cols=76 Identities=20% Similarity=0.129 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeecc-----------CC----CCCChh
Q 028869 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL-----------WC----SDAHRE 102 (202)
Q Consensus 38 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-----------~~----~~~~~~ 102 (202)
++....++.+...+.|++.+-|.. ..++|++. |+ +-..+.-.|.. ++ .-+.+.
T Consensus 9 DK~~iv~lAk~L~~lGfeIiATgG-------Tak~L~e~---GI--~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr 76 (511)
T TIGR00355 9 DKTGIVEFAQGLVERGVELLSTGG-------TAKLLAEA---GV--PVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARR 76 (511)
T ss_pred CcccHHHHHHHHHHCCCEEEEech-------HHHHHHHC---CC--eEEEeecccCCchhhCCccccCCchhhhhhhcCC
Confidence 355677888888899999997754 44677765 65 32222222211 00 011111
Q ss_pred hHHHHHHHHHHHcCCCceeEeeecc
Q 028869 103 LVVPALQKSLENLQLEYIDLYVIHW 127 (202)
Q Consensus 103 ~i~~~~~~sL~~Lg~~~vDl~~lh~ 127 (202)
.- +. .+.|+..|+..+|++.+.-
T Consensus 77 ~~-~~-~~~l~~~~I~~IDlVvvNL 99 (511)
T TIGR00355 77 GD-DD-DADLEEHGIEPIDLVVVNL 99 (511)
T ss_pred Cc-hH-HHHHHHcCCCceeEEEEec
Confidence 11 23 6678899999999999873
No 77
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=40.19 E-value=24 Score=25.29 Aligned_cols=40 Identities=8% Similarity=-0.115 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEA 76 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~ 76 (202)
.+.+.-.+++...++.|.+.-+.|..|| +...+..|++++
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6777778899999999999999999999 899999999987
No 78
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=39.23 E-value=1.5e+02 Score=21.61 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCcEEeCCC
Q 028869 43 KLAILEAMKLGYRHFDTAT 61 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~Dta~ 61 (202)
...+..+++.|+|+||.--
T Consensus 31 ~~~i~~qL~~GvR~~dirv 49 (135)
T smart00148 31 VEGYIQALDHGCRCVELDC 49 (135)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 5678899999999997643
No 79
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=39.03 E-value=34 Score=28.64 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=26.6
Q ss_pred CccccceeeCCcCCC-----------CChhHHHHHHHHHHHcCCcEE
Q 028869 22 RRMPVLGLGTAASPF-----------SGSETTKLAILEAMKLGYRHF 57 (202)
Q Consensus 22 ~~v~~lglG~~~~~~-----------~~~~~~~~~l~~A~~~Gi~~~ 57 (202)
.=+|+-||||--++. +|+-...=+++.|+++||..|
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i 53 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEI 53 (291)
T ss_pred EEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEE
Confidence 347899999976653 466666677899999999643
No 80
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=38.89 E-value=1.9e+02 Score=22.75 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ 116 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 116 (202)
.+.++-.+++..+++.|+.++|.--.. ....+....... . .+..+.++..-+....+.+.+.+.+++.. .+|
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~-~~~~~~~~~~~~---~---~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~g 143 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDL-FPDDLKSRLAAR---K---GGTKIILSYHDFEKTPSWEELIELLEEMQ-ELG 143 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGC-CHHHHHHHHHHH---H---TTSEEEEEEEESS---THHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEccc-chhHHHHHHHHh---h---CCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcC
Confidence 567888999999999999999985432 222222221111 1 56778888775555555555666555544 788
Q ss_pred CCceeEeeec
Q 028869 117 LEYIDLYVIH 126 (202)
Q Consensus 117 ~~~vDl~~lh 126 (202)
.|.+-+...-
T Consensus 144 adivKia~~~ 153 (224)
T PF01487_consen 144 ADIVKIAVMA 153 (224)
T ss_dssp -SEEEEEEE-
T ss_pred CCeEEEEecc
Confidence 7777776544
No 81
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.74 E-value=95 Score=26.95 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=55.5
Q ss_pred ccccceeeCCcCCC-----------------CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCC
Q 028869 23 RMPVLGLGTAASPF-----------------SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSR 85 (202)
Q Consensus 23 ~v~~lglG~~~~~~-----------------~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R 85 (202)
+|-.||||...-+- +++++ +..+..-+.||||+..+-. ..-..+.|+.++..+ .-
T Consensus 15 pIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it---~~Nyk~vL~pll~~~---~g 86 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAIT---RDNYKDVLKPLLKGV---GG 86 (481)
T ss_pred cEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcC---hhhHHHHHHHHhhcC---CC
Confidence 45678888764321 45554 5555666899999987653 333445555554433 34
Q ss_pred CceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCC
Q 028869 86 DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVS 130 (202)
Q Consensus 86 ~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~ 130 (202)
+.+.|..-+ +.+.-. +-+.+.++++=|+|-+.=-|+.+
T Consensus 87 qgf~vnLSv---d~~s~D----lmr~crk~~vLYidTvVEpW~gf 124 (481)
T COG5310 87 QGFCVNLSV---DTSSLD----LMRLCRKHGVLYIDTVVEPWLGF 124 (481)
T ss_pred ceEEEEeEe---ccchhH----HHHHHHHcCeEEEeeeecccccc
Confidence 555555433 222223 44556789999999887777644
No 82
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=38.61 E-value=76 Score=25.43 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=46.6
Q ss_pred ccccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC----ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCC
Q 028869 23 RMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD 98 (202)
Q Consensus 23 ~v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~ 98 (202)
..+.||||...+. .+.-+.+++.++.+=...+.|. ++..+-+++.+. .-+..+|--|-
T Consensus 130 ~~~~ig~GG~HYa-------pr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s-------~~~~a~id~K~---- 191 (213)
T PF04414_consen 130 CPVAIGFGGGHYA-------PRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKS-------GADVAIIDWKS---- 191 (213)
T ss_dssp -EEEEEE-S-TT--------HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHC-------T-SEEEEETTT----
T ss_pred cceeEEecCcccc-------hhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhC-------CCcEEEEecCC----
Confidence 4789999998864 4455778888888777778885 345555555432 22334554442
Q ss_pred CChhhHHHHHHHHHHHcCCC
Q 028869 99 AHRELVVPALQKSLENLQLE 118 (202)
Q Consensus 99 ~~~~~i~~~~~~sL~~Lg~~ 118 (202)
-+...++.+++.|+.+|++
T Consensus 192 -l~~~~r~~i~~~l~~~gi~ 210 (213)
T PF04414_consen 192 -LKSEDRRRIEELLEELGIE 210 (213)
T ss_dssp -S-HHHHHHHHHHHHHHT-E
T ss_pred -CCHHHHHHHHHHHHHcCCe
Confidence 2367888999999999875
No 83
>PRK14866 hypothetical protein; Provisional
Probab=38.55 E-value=3e+02 Score=24.81 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=53.4
Q ss_pred ccccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC----ChH-HHHHHHHHHHhCCCCCCCCceEEeeccCCC
Q 028869 23 RMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ----TEQ-PLGDAIAEALSTGIIKSRDELFIASKLWCS 97 (202)
Q Consensus 23 ~v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~-~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~ 97 (202)
..+.||||..++. .+--+.+++.++.+=...+.|. .+. .+.+++.+. ..+-++|--|-.
T Consensus 185 ~~~~iG~GGgHYa-------pr~t~i~le~~~~~GHi~pky~l~~l~~~~~i~~a~~~~-------~~~~a~iD~Ks~-- 248 (451)
T PRK14866 185 DRPLVGFGGGHYA-------PRQTRIVLETDWAFGHIAADWQLGALGDPAVLRAAFEAS-------GADAAYIDRKAM-- 248 (451)
T ss_pred CCEEEEeCCCCcc-------hhHHHHhhcCCeeEEeeccccchhccCcHHHHHHHHHhc-------CCCEEEEecCCC--
Confidence 4678999988764 3334667788888877788886 234 555555532 344455554432
Q ss_pred CCChhhHHHHHHHHHHHcCCCceeE
Q 028869 98 DAHRELVVPALQKSLENLQLEYIDL 122 (202)
Q Consensus 98 ~~~~~~i~~~~~~sL~~Lg~~~vDl 122 (202)
....++.+.+.|+.+|++.+.-
T Consensus 249 ---k~~~r~~i~~~l~~lgl~vi~e 270 (451)
T PRK14866 249 ---SSGDRPRLEALLEELGLRVLSE 270 (451)
T ss_pred ---CHHHHHHHHHHHHHCCCEEEEe
Confidence 2567888999999999876444
No 84
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=38.51 E-value=86 Score=22.39 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeee
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAAN 193 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~ 193 (202)
.+.+.+.++.+.+.|+--=+|.+.|+.++++++-+.++--|++.
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEE
Confidence 46788999999999999999999999999999998777555544
No 85
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=38.19 E-value=1.6e+02 Score=25.30 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCC------------CCCceE-----Eeecc--------
Q 028869 40 ETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIK------------SRDELF-----IASKL-------- 94 (202)
Q Consensus 40 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~------------~R~~~~-----I~tK~-------- 94 (202)
+.++.+...|-..||.++=..-..+-...++++|.+. |+.. ++..+- +.+=.
T Consensus 15 eNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~---Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P~~sei~~vv 91 (353)
T COG3457 15 ENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLAL---GIEGIAESRIDNAIRLREAGCTIPGHLLRSPCMSEIEDVV 91 (353)
T ss_pred HhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhc---CcceeeehhHHHHHHHHHcCCCcCceEeecccHHHHHHHH
Confidence 4466666777777777776666555555566666543 3210 000011 11000
Q ss_pred ---CCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 028869 95 ---WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (202)
Q Consensus 95 ---~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (202)
--...+.-...+++.+.-.++|..+==++++.+-| ..||-|.+ ..++..++++++..-.=+.-+|+
T Consensus 92 ~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D-lreG~~~~----------~~~~l~~~V~eI~~lkGi~~vGl 160 (353)
T COG3457 92 RKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGD-LREGQWGF----------LIEDLEETVEEIQQLKGIHLVGL 160 (353)
T ss_pred HhcCeEEEecHHHHHHHHHHHHHhCcceeEEEEEEccc-ccCcchhh----------HHHHHHHHHHHHhcCCCceEEee
Confidence 00011223456678888899996543344455443 33433221 14556677777777777888899
Q ss_pred -CCCC
Q 028869 172 -SNFS 175 (202)
Q Consensus 172 -Sn~~ 175 (202)
.||.
T Consensus 161 gTnF~ 165 (353)
T COG3457 161 GTNFP 165 (353)
T ss_pred ecccc
Confidence 7764
No 86
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=37.90 E-value=2.3e+02 Score=24.08 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEE-eCCCCHHHHHHHHHh
Q 028869 147 PMDFKSVWEAMEECQNLGYTKAIG-VSNFSCKKLGDILAT 185 (202)
Q Consensus 147 ~~~~~~~~~~l~~l~~~G~ir~iG-vSn~~~~~l~~l~~~ 185 (202)
+...+...+.+..++++|.++=|| .|.-+|++|+.+.+.
T Consensus 269 ~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~ 308 (311)
T COG0646 269 DLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEA 308 (311)
T ss_pred CCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHH
Confidence 445788899999999999999895 666679999888764
No 87
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=37.30 E-value=2.2e+02 Score=23.30 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC------CCChhhHHHHHHH
Q 028869 39 SETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS------DAHRELVVPALQK 110 (202)
Q Consensus 39 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~------~~~~~~i~~~~~~ 110 (202)
+....+.++.+-+.|++.++.+..+- ++...-++++.. ....+.+-+-+... ..+++...+.+++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 45566778888889999999988765 566667778876 55557777776543 2345677777777
Q ss_pred HHHHcCCCceeEeeeccC
Q 028869 111 SLENLQLEYIDLYVIHWP 128 (202)
Q Consensus 111 sL~~Lg~~~vDl~~lh~p 128 (202)
.|.. | .|.+++..-
T Consensus 156 dLeA-G---A~~ViiEar 169 (244)
T PF02679_consen 156 DLEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHHH-T---ECEEEE--T
T ss_pred HHHC-C---CCEEEEeee
Confidence 7776 5 577777754
No 88
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=37.29 E-value=10 Score=24.39 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEAL 77 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~ 77 (202)
.+++.-.++|..++..|.+.-+.|..|| +...+..|++++.
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 4678888999999999999999999999 8999999999874
No 89
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=37.07 E-value=2.7e+02 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=10.3
Q ss_pred CChhHHHHHHHHHHHcCCcEE
Q 028869 37 SGSETTKLAILEAMKLGYRHF 57 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~ 57 (202)
.+++...++++.+.+.|...|
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEE
Confidence 444445555555555554444
No 90
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.70 E-value=3.1e+02 Score=24.42 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=42.0
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHHHHH----HHHHHHHHcCCccEE
Q 028869 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVW----EAMEECQNLGYTKAI 169 (202)
Q Consensus 95 ~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~G~ir~i 169 (202)
.-+..+.+.+.+.++..+ .++.+.+.++.+- .|..... .- ..+.....+.++.+ .+.+.|.+.|.. .+
T Consensus 212 GlPgqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~-~~----~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~ 284 (453)
T PRK13347 212 GLPHQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKN-QR----LIDEAALPDAEERLRQARAVADRLLAAGYV-PI 284 (453)
T ss_pred eCCCCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhH-Hh----cCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EE
Confidence 335567777777777665 5888888887663 2321100 00 00000001122222 355678888975 59
Q ss_pred EeCCCCHH
Q 028869 170 GVSNFSCK 177 (202)
Q Consensus 170 GvSn~~~~ 177 (202)
|++||...
T Consensus 285 ~~~~far~ 292 (453)
T PRK13347 285 GLDHFALP 292 (453)
T ss_pred eccceeCC
Confidence 99999853
No 91
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=35.81 E-value=1.9e+02 Score=21.66 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH--cCCccEEEeCCCC
Q 028869 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFS 175 (202)
Q Consensus 98 ~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~ 175 (202)
..+.+.+.+.+++.-+.+|++ ++++|-.. -.+..+.+++..+ .|.|-.=|--+|+
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~----------------------Egelid~I~~a~~~~dgiIINpga~THt 79 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH----------------------EGELIDWIHEARDGADGIIINPGAYTHT 79 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc----------------------HHHHHHHHHHhhccCcEEEEcchHHHHH
Confidence 345688999999999999975 77766432 3467777777754 3555555778888
Q ss_pred HHHHHHHHHhCCCCCeeeeeecc
Q 028869 176 CKKLGDILATAKIPPAANQVSFL 198 (202)
Q Consensus 176 ~~~l~~l~~~~~~~p~~~Q~e~~ 198 (202)
.-.+..+++...+| ++.+-+|
T Consensus 80 SvAi~DAl~~~~~P--~VEVHiS 100 (140)
T cd00466 80 SIALRDALAAVSIP--VIEVHIS 100 (140)
T ss_pred HHHHHHHHHcCCCC--EEEEecC
Confidence 88888888866543 3444443
No 92
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=35.62 E-value=23 Score=35.15 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=21.3
Q ss_pred ccEEEeCC--------CCHHHHHHHHHhCCCCCeeeeeec
Q 028869 166 TKAIGVSN--------FSCKKLGDILATAKIPPAANQVSF 197 (202)
Q Consensus 166 ir~iGvSn--------~~~~~l~~l~~~~~~~p~~~Q~e~ 197 (202)
.|..|+|+ -+..+++++.+..++.|++.|++-
T Consensus 488 ~k~~g~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~d~ 527 (1066)
T PRK05294 488 AKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDT 527 (1066)
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEeecC
Confidence 35566663 344566677777778899988763
No 93
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.09 E-value=3.2e+02 Score=24.23 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCcEEeCCCCCC------------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 028869 44 LAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg------------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 111 (202)
+.++...++|++.+..+-.-. +...+-++++...+.|. +.+.+..-+..+..+.+.+.+.++..
T Consensus 152 e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~----~~v~~dli~GlPgqt~e~~~~~l~~~ 227 (453)
T PRK09249 152 EMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGF----TSINIDLIYGLPKQTPESFARTLEKV 227 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CcEEEEEEccCCCCCHHHHHHHHHHH
Confidence 445555566888775443222 22233344544422232 12333334455667778888877776
Q ss_pred HHHcCCCceeEeeecc-CCCCCCCCCCCCCccCCCCC-CCHHHHH-HHHHHHHHcCCccEEEeCCCCHH
Q 028869 112 LENLQLEYIDLYVIHW-PVSSKPGSYEFPIKKEDFLP-MDFKSVW-EAMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~-p~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
+ .++++++.++.+-. |....... .. ......+ ....+.+ .+.+.|.+.|.. .+++|||...
T Consensus 228 ~-~l~~~~i~~y~l~~~p~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far~ 291 (453)
T PRK09249 228 L-ELRPDRLAVFNYAHVPWLFKAQR-KI--DEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFALP 291 (453)
T ss_pred H-hcCCCEEEEccCccchhhhhHhc-CC--CcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeCC
Confidence 6 48899998887641 11000000 00 0000000 0111223 334556777875 5999999853
No 94
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=34.25 E-value=3e+02 Score=23.62 Aligned_cols=136 Identities=15% Similarity=0.047 Sum_probs=77.9
Q ss_pred eeecCCCCCccccceeeCCcCCCCChhHHHHHHHHHH-HcCC-------cEEeCCCCCCChHHHHHHHHHHHhCCCCCCC
Q 028869 14 DVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAM-KLGY-------RHFDTATLYQTEQPLGDAIAEALSTGIIKSR 85 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~~~~~~~~~~~~~l~~A~-~~Gi-------~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R 85 (202)
...++.. .-=|+|-+||..+. +. +.+..|+ .+|- |.+|.... .+..+=..| ++
T Consensus 74 ~~~i~~~-~~~sRl~~Gtg~y~--s~----~~~~~a~~asg~e~vTva~rr~~~~~~--~~~~~~~~~----------~~ 134 (326)
T PRK11840 74 SWTVAGK-TFSSRLLVGTGKYK--DF----EETAAAVEASGAEIVTVAVRRVNVSDP--GAPMLTDYI----------DP 134 (326)
T ss_pred CeEECCE-EEecceeEecCCCC--CH----HHHHHHHHHhCCCEEEEEEEeecCcCC--CcchHHHhh----------hh
Confidence 3445543 33488999998875 33 4445555 3454 44454221 112222222 23
Q ss_pred CceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCC
Q 028869 86 DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (202)
Q Consensus 86 ~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 165 (202)
..+.+.-.. ....+.++-.+..+-..+.++++++-|=.+.......| +..+++++.++|.++|.
T Consensus 135 ~~~~~lpNT-ag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llp---------------d~~~~v~aa~~L~~~Gf 198 (326)
T PRK11840 135 KKYTYLPNT-AGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYP---------------DMVETLKATEILVKEGF 198 (326)
T ss_pred cCCEECccC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCccc---------------CHHHHHHHHHHHHHCCC
Confidence 333332111 12344566666667777888999888866543322222 47899999999999998
Q ss_pred ccEEEeCCCCHHHHHHHHHh
Q 028869 166 TKAIGVSNFSCKKLGDILAT 185 (202)
Q Consensus 166 ir~iGvSn~~~~~l~~l~~~ 185 (202)
.- +=+|+-++...+++.+.
T Consensus 199 ~v-~~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 199 QV-MVYCSDDPIAAKRLEDA 217 (326)
T ss_pred EE-EEEeCCCHHHHHHHHhc
Confidence 73 25677777777777664
No 95
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=34.04 E-value=2.7e+02 Score=22.97 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=76.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++..++++.+.+.|+..+.-+..-. -...+-+.++...+.| -.++.|+|... .+ ...-..|...
T Consensus 40 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g----~~~v~i~TNG~-------ll-~~~~~~l~~~ 107 (302)
T TIGR02668 40 LSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDYG----IKDVSMTTNGI-------LL-EKLAKKLKEA 107 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhCC----CceEEEEcCch-------HH-HHHHHHHHHC
Confidence 5778888888888899998876543111 1122334444431112 12556666421 12 2233345666
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCCC-CCCHHHHHHHHHHHHHcCCc----cEEEeCCCCHHHHHHHHHhCC-CC
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFL-PMDFKSVWEAMEECQNLGYT----KAIGVSNFSCKKLGDILATAK-IP 189 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~l~~l~~~~~-~~ 189 (202)
|++.+.+ -++.+++..- ..+. ...++.+++.++.+++.|.. ..+.+.+.+..++.++++.+. ..
T Consensus 108 g~~~v~i-Sld~~~~~~~---------~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g 177 (302)
T TIGR02668 108 GLDRVNV-SLDTLDPEKY---------KKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGG 177 (302)
T ss_pred CCCEEEE-EecCCCHHHh---------hhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 7665443 2343322110 0000 12478999999999999852 244555578888888887653 33
Q ss_pred Ceeeeeeccc
Q 028869 190 PAANQVSFLK 199 (202)
Q Consensus 190 p~~~Q~e~~~ 199 (202)
..+.=+++.|
T Consensus 178 ~~~~~ie~~p 187 (302)
T TIGR02668 178 AILQLIELMP 187 (302)
T ss_pred CEEEEEEEeE
Confidence 4444455554
No 96
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=33.95 E-value=3.2e+02 Score=23.85 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCcEEeCCCCCCC------------hHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 028869 44 LAILEAMKLGYRHFDTATLYQT------------EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg~------------e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 111 (202)
+.++...++|+|.+..+-.-++ ...+-++++.+.+.|. +.+-+.--+.-+..+.+.+.+.++..
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~----~~v~~dlI~GlPgqt~e~~~~tl~~~ 191 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGI----ENFSLDLISGLPHQTLEDWQASLEAA 191 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHHH
Confidence 4455555678887765544332 2223344444422232 11222223344567778888877766
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCH---HHHH-HHHHHHHHcCCccEEEeCCCCHH
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDF---KSVW-EAMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
+ .|+.+++.++.+.- .+.++=.... ........+. .+.+ .+.+.|.+.|.. ++++|||...
T Consensus 192 ~-~l~p~~is~y~L~~-~pgT~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~~ 256 (400)
T PRK07379 192 I-ALNPTHLSCYDLVL-EPGTAFGKQY--QPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAKP 256 (400)
T ss_pred H-cCCCCEEEEeccee-cCCchhHHHh--hcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheECC
Confidence 5 48889999887762 2222200000 0000101111 2233 355668888875 6899999854
No 97
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=33.70 E-value=2.5e+02 Score=22.43 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEeC-CCCHHHHHHHHHhCCCC
Q 028869 113 ENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVS-NFSCKKLGDILATAKIP 189 (202)
Q Consensus 113 ~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-n~~~~~l~~l~~~~~~~ 189 (202)
..+|.+|+=+++.- .|.. .+. +...++...-. ++.+||. |.+.+.+.++++.. .
T Consensus 19 ~~~gad~iG~If~~~SpR~-----------------Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~ 75 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRY-----------------VSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEEL--G 75 (208)
T ss_pred HHcCCCEEEEEEcCCCCCc-----------------CCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhc--C
Confidence 46888998887655 4421 122 34444444433 7899986 55677788888744 5
Q ss_pred Ceeeee
Q 028869 190 PAANQV 195 (202)
Q Consensus 190 p~~~Q~ 195 (202)
+..+|+
T Consensus 76 ld~VQl 81 (208)
T COG0135 76 LDAVQL 81 (208)
T ss_pred CCEEEE
Confidence 677776
No 98
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=33.18 E-value=2.3e+02 Score=22.42 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCC------
Q 028869 44 LAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL------ 117 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~------ 117 (202)
+.+...++.|-+.+|.+-..|. +-+.|++. . .++...-..+.+.+.+++.+.+.-.+.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~---LL~~L~~~---k----------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL 68 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE---LLAYLKDE---K----------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGL 68 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH---HHHHHHHh---c----------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhH
Confidence 4566677888899988654321 22334331 1 112223345566677766655544433
Q ss_pred -----CceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHH
Q 028869 118 -----EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (202)
Q Consensus 118 -----~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~ 184 (202)
+..|.+.+..-- .......+.|+++.+-|+--=|++.||..+..+.-+-
T Consensus 69 ~~f~d~sFD~VIlsqtL------------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 69 ADFPDQSFDYVILSQTL------------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred hhCCCCCccEEehHhHH------------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH
Confidence 333333332110 0133455667788888988889999999988775554
No 99
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=32.85 E-value=2.1e+02 Score=21.40 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=51.9
Q ss_pred CCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH--cCCccEEEeCCCC
Q 028869 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFS 175 (202)
Q Consensus 98 ~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~ 175 (202)
..+.+.+.+.+++.-+.+|++ ++++|-.. -.+..+.+++..+ .|.|-.=|--+|+
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~-v~~~QSN~----------------------EGelId~i~~a~~~~dgiIINpga~THt 79 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE-LEFFQSNS----------------------EGQLIDKIHEAEGQYDGIIINPGALTHT 79 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc----------------------HHHHHHHHHhccccCCEEEEcChHHhhh
Confidence 345688999999999999965 66666432 3467777777754 3555555778888
Q ss_pred HHHHHHHHHhCCCCCeeeeeeccc
Q 028869 176 CKKLGDILATAKIPPAANQVSFLK 199 (202)
Q Consensus 176 ~~~l~~l~~~~~~~p~~~Q~e~~~ 199 (202)
.-.+..+++...+| ++.+-+|.
T Consensus 80 SiAl~DAl~~~~~P--~vEVHiSN 101 (141)
T TIGR01088 80 SVALRDALAAVSLP--VVEVHLSN 101 (141)
T ss_pred HHHHHHHHHcCCCC--EEEEEcCC
Confidence 88888888765543 44444443
No 100
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=32.36 E-value=2.2e+02 Score=22.73 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHH-HcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcC
Q 028869 38 GSETTKLAILEAM-KLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ 116 (202)
Q Consensus 38 ~~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 116 (202)
+.+++..+.+... -.|+-|...++-|=+.+...+..+.. +.-. ++..- .+.+.+. +.+.++.++
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v-------~~~~-~VgVf---~n~~~~~----i~~i~~~~~ 75 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAV-------PKVK-VVGVF---VNESIEE----ILEIAEELG 75 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhC-------CCCC-EEEEE---CCCCHHH----HHHHHHhcC
Confidence 4455533333312 22444555566665655555555432 2111 22211 1233333 333444554
Q ss_pred CCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCH
Q 028869 117 LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSC 176 (202)
Q Consensus 117 ~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 176 (202)
+|.+|+|.+.. .+-.+.+.+...-..+|++.++.-..
T Consensus 76 ---ld~VQlHG~e~--------------------~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 76 ---LDAVQLHGDED--------------------PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred ---CCEEEECCCCC--------------------HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 79999998742 12233333333356889999986543
No 101
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=32.33 E-value=1.8e+02 Score=20.48 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcCC---CceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHH
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL---EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~---~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (202)
+|=.+.|+-|++. .-.+..+++.+.+....... ..+|++++-.+.... .++.+.-+.|..|
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~---------------~~~~~l~~~l~~l 101 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE---------------LDYKEIKKSLIHV 101 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc---------------CCHHHHHHHHHHH
Confidence 4556677777765 67778888888888875532 357999988775432 2466777777776
Q ss_pred HHc
Q 028869 161 QNL 163 (202)
Q Consensus 161 ~~~ 163 (202)
.++
T Consensus 102 l~k 104 (114)
T PRK00499 102 LKL 104 (114)
T ss_pred HHH
Confidence 655
No 102
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=31.89 E-value=2.2e+02 Score=21.22 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=42.4
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcC--CCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg--~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (202)
.|=.+.|+-|+.. .-.+..+++.+.++..... ....|++++..+... . ++.+..+.|..+.
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~---------------~f~~L~~~l~~~~ 108 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-P---------------DFLKLLQDFLQQI 108 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-C---------------CHHHHHHHHHHHH
Confidence 4666778888654 5667888888888887653 346899999877543 1 3566666666555
Q ss_pred Hc
Q 028869 162 NL 163 (202)
Q Consensus 162 ~~ 163 (202)
++
T Consensus 109 ~~ 110 (138)
T PRK00730 109 PE 110 (138)
T ss_pred HH
Confidence 43
No 103
>PRK00915 2-isopropylmalate synthase; Validated
Probab=31.56 E-value=4e+02 Score=24.24 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=26.1
Q ss_pred eeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHH
Q 028869 28 GLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIA 74 (202)
Q Consensus 28 glG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~ 74 (202)
.|++......+++.+.++++.+.+.|...|-.++..| .-..+.+.++
T Consensus 137 ~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~ 185 (513)
T PRK00915 137 EFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIK 185 (513)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHH
Confidence 4555444445666677777777777766664444444 3333444443
No 104
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.51 E-value=2.8e+02 Score=22.49 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTA 60 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta 60 (202)
.+.++..++++...+.||..++.+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 567888899999999999999997
No 105
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=31.37 E-value=72 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHcCCCcee--Eee-eccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccE
Q 028869 102 ELVVPALQKSLENLQLEYID--LYV-IHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKA 168 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vD--l~~-lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 168 (202)
+...+.+.+.+++||+.. | .++ -+.| .....+++.+++|+++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~-------------------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISY-DWSDEYITTEP-------------------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccc-cCCCCeECCCH-------------------HHHHHHHHHHHHHHHCCCEEe
Confidence 556778889999999853 3 222 1111 125679999999999999854
No 106
>PRK10799 metal-binding protein; Provisional
Probab=31.17 E-value=1.2e+02 Score=24.56 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHHHcCCcEEeCCCCCCChHHHHHHHHH
Q 028869 46 ILEAMKLGYRHFDTATLYQTEQPLGDAIAE 75 (202)
Q Consensus 46 l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~ 75 (202)
...|.+.|++.+|.. .|.+|...-+.|.+
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~ 228 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSE 228 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHH
Confidence 345556666666653 34455553333333
No 107
>PF12728 HTH_17: Helix-turn-helix domain
Probab=31.16 E-value=1.1e+02 Score=17.74 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCccEEEeCC---CCHHHHHHHHHh
Q 028869 155 EAMEECQNLGYTKAIGVSN---FSCKKLGDILAT 185 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvSn---~~~~~l~~l~~~ 185 (202)
.++.++.++|.+.++++.. |+...++++++.
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 5677888999999998744 678888888764
No 108
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=31.00 E-value=92 Score=22.71 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHc
Q 028869 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (202)
Q Consensus 105 ~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 163 (202)
+..+.+.|+.+....+|.++++..++... +..+....++.|.++
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R---------------~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGR---------------NYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhcc---------------CHHHHHHHHHHHHhh
Confidence 44555566666556778888877665432 345566667777766
No 109
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.98 E-value=3.4e+02 Score=23.19 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTA 60 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta 60 (202)
.+.++..++++..-++|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 567888899898889999999994
No 110
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=30.84 E-value=3.9e+02 Score=23.87 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=60.5
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCC-CCceEEeeccCCCCCChhhHHHHHHHHHHHcCCC----ceeEeeeccCCCCCCC
Q 028869 60 ATLYQTEQPLGDAIAEALSTGIIKS-RDELFIASKLWCSDAHRELVVPALQKSLENLQLE----YIDLYVIHWPVSSKPG 134 (202)
Q Consensus 60 a~~Yg~e~~~g~~l~~~~~~~~~~~-R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~----~vDl~~lh~p~~~~~~ 134 (202)
...||.++-+-++|+...+.. + .+-++|.|-+.+. .--+++..-+++.-+.++-+ .+.++.++.|+....
T Consensus 65 d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~e-iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs- 139 (454)
T cd01973 65 SAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTE-IIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS- 139 (454)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHh-hhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC-
Confidence 345788888888888765432 2 3446777665332 11244444444433333111 367888888765321
Q ss_pred CCCCCCccCCCCCCCHHHHHHHHHH-HHH----cCCccEEEeCC--CCHHHHHHHHHhCCCCCe
Q 028869 135 SYEFPIKKEDFLPMDFKSVWEAMEE-CQN----LGYTKAIGVSN--FSCKKLGDILATAKIPPA 191 (202)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~-l~~----~G~ir~iGvSn--~~~~~l~~l~~~~~~~p~ 191 (202)
. ......+++++-+ +.. +++|-=||-.+ -+.+.+.++++..++.+.
T Consensus 140 --~---------~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 140 --M---------VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred --H---------HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 0 0012333333332 221 45677776332 335778888887776543
No 111
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=30.59 E-value=1.9e+02 Score=22.69 Aligned_cols=72 Identities=24% Similarity=0.138 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC------------------CCC
Q 028869 39 SETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS------------------DAH 100 (202)
Q Consensus 39 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~------------------~~~ 100 (202)
++...++.+...+.|++.+=|.. ..++|++. |+ +-. ...|+... -+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~AT~G-------TAk~L~e~---GI--~v~---~V~k~TgfpE~l~GRVKTLHP~ihggiL~ 74 (187)
T cd01421 10 KTGLVEFAKELVELGVEILSTGG-------TAKFLKEA---GI--PVT---DVSDITGFPEILGGRVKTLHPKIHGGILA 74 (187)
T ss_pred cccHHHHHHHHHHCCCEEEEccH-------HHHHHHHc---CC--eEE---EhhhccCCcHhhCCccccCChhhhhhhhc
Confidence 56677888888899999997753 45667665 54 222 22333110 011
Q ss_pred hhhHHHHHHHHHHHcCCCceeEeeecc
Q 028869 101 RELVVPALQKSLENLQLEYIDLYVIHW 127 (202)
Q Consensus 101 ~~~i~~~~~~sL~~Lg~~~vDl~~lh~ 127 (202)
+....... .++..|...+|++.+.-
T Consensus 75 ~~~~~~~~--~~~~~~i~~idlVvvNl 99 (187)
T cd01421 75 RRDNEEHK--DLEEHGIEPIDLVVVNL 99 (187)
T ss_pred CCCChhHH--HHHHcCCCCeeEEEEcc
Confidence 11112222 67899999999999874
No 112
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=30.31 E-value=2e+02 Score=24.33 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=43.9
Q ss_pred ceEEeecc--CCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcC
Q 028869 87 ELFIASKL--WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG 164 (202)
Q Consensus 87 ~~~I~tK~--~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 164 (202)
.+-|++.+ .-+.-+++.+.+.++ .+..++++-+-+..+|-... ..|++++++|
T Consensus 181 gIkvc~HiI~GLPgE~~~~mleTak-~v~~~~v~GIKlH~Lhvvkg------------------------T~m~k~Y~~G 235 (312)
T COG1242 181 GIKVCTHLINGLPGETRDEMLETAK-IVAELGVDGIKLHPLHVVKG------------------------TPMEKMYEKG 235 (312)
T ss_pred CCeEEEEEeeCCCCCCHHHHHHHHH-HHHhcCCceEEEEEEEEecC------------------------ChHHHHHHcC
Confidence 46677665 445667788888888 78889999999988886532 3577888889
Q ss_pred CccEEEe
Q 028869 165 YTKAIGV 171 (202)
Q Consensus 165 ~ir~iGv 171 (202)
..+.+-.
T Consensus 236 ~l~~ls~ 242 (312)
T COG1242 236 RLKFLSL 242 (312)
T ss_pred CceeccH
Confidence 8876543
No 113
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=30.21 E-value=2.4e+02 Score=21.23 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=51.5
Q ss_pred CCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH--cCCccEEEeCCCC
Q 028869 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFS 175 (202)
Q Consensus 98 ~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~ 175 (202)
..+.+.+.+.+++.-+.+|++ ++++|-.. -.+..+.+++..+ .|.|-.=|--+|+
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-v~~~QSN~----------------------EGelId~I~~a~~~~dgiiINpga~THt 81 (146)
T PRK05395 25 STTLADIEALLEEEAAELGVE-LEFFQSNH----------------------EGELIDRIHEARDGADGIIINPGAYTHT 81 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc----------------------HHHHHHHHHhcccCCcEEEECchHHHHH
Confidence 345688999999999999975 67666432 3467777777753 3444444777788
Q ss_pred HHHHHHHHHhCCCCCeeeeeeccc
Q 028869 176 CKKLGDILATAKIPPAANQVSFLK 199 (202)
Q Consensus 176 ~~~l~~l~~~~~~~p~~~Q~e~~~ 199 (202)
.-.+..+++..++| ++.+-+|.
T Consensus 82 SiAl~DAl~~~~~P--~VEVHiSN 103 (146)
T PRK05395 82 SVALRDALAAVSIP--VIEVHLSN 103 (146)
T ss_pred HHHHHHHHHcCCCC--EEEEecCC
Confidence 88888888866543 44444443
No 114
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=30.20 E-value=2.1e+02 Score=20.49 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=43.2
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcCC--CceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL--EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~--~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (202)
+|=.+.|+-|+....-.+..+++.+.++...... .-.|++++..+.... .++.+..+.|..|.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~---------------~~~~~l~~~l~~ll 108 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR---------------ATAKQAVAELAQLM 108 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc---------------CCHHHHHHHHHHHH
Confidence 5656777777666566678888888888864432 246999998875432 23566666666665
Q ss_pred Hc
Q 028869 162 NL 163 (202)
Q Consensus 162 ~~ 163 (202)
++
T Consensus 109 ~k 110 (120)
T PRK04390 109 AK 110 (120)
T ss_pred HH
Confidence 44
No 115
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=30.06 E-value=3.4e+02 Score=22.93 Aligned_cols=130 Identities=11% Similarity=0.036 Sum_probs=75.2
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCC--------CC-------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCCh
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATL--------YQ-------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~--------Yg-------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 101 (202)
.++++..+..+.+.+.|+..+|.--. +| .-+.+.+.++...+. ...++-|+.|+.....+.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~----~~~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA----VPAHLPVTVKVRLGWDSG 147 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh----cCCCcceEEEEECCCCCc
Confidence 56788888888888999999984311 22 233455555543211 122467888874322222
Q ss_pred hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHH
Q 028869 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~ 180 (202)
+.. ..+-..++..| +|.+.+|.-.... . +.. ..--|+...++++.-.|-=||.-.. +++++.
T Consensus 148 ~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~--~---------y~g--~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~ 210 (312)
T PRK10550 148 ERK-FEIADAVQQAG---ATELVVHGRTKED--G---------YRA--EHINWQAIGEIRQRLTIPVIANGEIWDWQSAQ 210 (312)
T ss_pred hHH-HHHHHHHHhcC---CCEEEECCCCCcc--C---------CCC--CcccHHHHHHHHhhcCCcEEEeCCcCCHHHHH
Confidence 222 34555566777 5666778532210 0 000 0002677777777767778888776 578888
Q ss_pred HHHHhCC
Q 028869 181 DILATAK 187 (202)
Q Consensus 181 ~l~~~~~ 187 (202)
++++..+
T Consensus 211 ~~l~~~g 217 (312)
T PRK10550 211 QCMAITG 217 (312)
T ss_pred HHHhccC
Confidence 8886543
No 116
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=29.82 E-value=2.9e+02 Score=22.00 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=66.8
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeecc-CCCCCCh-hhHHHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL-WCSDAHR-ELVVPALQKSLEN 114 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-~~~~~~~-~~i~~~~~~sL~~ 114 (202)
.+.++..++++.|.+.|+.-+-..+.| +-.+-+.+ ....+.|+|=+ +|....+ +.-...++..+ +
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l-------~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av-~ 81 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELL-------KGTEVRICTVVGFPLGASTTDVKLYETKEAI-K 81 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHc-------CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHH-H
Confidence 678899999999999999888876654 32222222 22345565555 4444333 22333344444 4
Q ss_pred cCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHc--CCc-cEE-EeCCCCHHHHHHHHHh
Q 028869 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYT-KAI-GVSNFSCKKLGDILAT 185 (202)
Q Consensus 115 Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~i-r~i-GvSn~~~~~l~~l~~~ 185 (202)
+|.+-+|+++-...-.. -+....++.+.+.++. |+. +-| -.+-.+.+++..+.+.
T Consensus 82 ~GAdEiDvv~n~g~l~~----------------g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~i 140 (211)
T TIGR00126 82 YGADEVDMVINIGALKD----------------GNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEI 140 (211)
T ss_pred cCCCEEEeecchHhhhC----------------CcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHH
Confidence 79999999775432111 1245666777776654 442 322 2222344555555544
No 117
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=29.34 E-value=2.9e+02 Score=21.93 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHHc-----CCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCC---------------
Q 028869 37 SGSETTKLAILEAMKL-----GYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWC--------------- 96 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~-----Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~--------------- 96 (202)
.++++..+.+..|++. |+|--=.+..-.++..+...++.+ . .|.-+||-++..+
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~---~~gl~FvDS~T~~~s~a~~~A~~~gvp~ 144 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K---ERGLFFVDSRTTPRSVAPQVAKELGVPA 144 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H---HTT-EEEE-S--TT-SHHHHHHHCT--E
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H---HcCCEEEeCCCCcccHHHHHHHHcCCCE
Confidence 5677777777777753 443322222222555666666554 1 3444666444311
Q ss_pred --------CCCChhhHHHHHHHHHHHcCCCceeEeeec
Q 028869 97 --------SDAHRELVVPALQKSLENLQLEYIDLYVIH 126 (202)
Q Consensus 97 --------~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh 126 (202)
...+.+.|++++++..+.=..+--=+...|
T Consensus 145 ~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 145 ARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp EE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 246678899999988877665555566666
No 118
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=29.33 E-value=41 Score=27.20 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCCccccceeeCCcCCC-------------CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHH
Q 028869 19 SSNRRMPVLGLGTAASPF-------------SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEA 76 (202)
Q Consensus 19 ~~~~~v~~lglG~~~~~~-------------~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~ 76 (202)
+.+..|.++++.+..-+. ++.+-.......|.+.|+++||.+ .|.+|...-+.|.+.
T Consensus 165 ~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 165 DPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp CTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred CCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 555678888776654321 233334445567778888888875 466666654444443
No 119
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=29.32 E-value=76 Score=24.01 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHH
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~ 184 (202)
..++.++++.++++| ++-|++++.....+.++.+
T Consensus 114 t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~aD 147 (177)
T cd05006 114 SPNVLKALEAAKERG-MKTIALTGRDGGKLLELAD 147 (177)
T ss_pred CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhCC
Confidence 358999999999998 8999999987666665543
No 120
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=29.16 E-value=1.1e+02 Score=25.48 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 028869 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDIL 183 (202)
Q Consensus 104 i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~ 183 (202)
.++.+.-.+.-++ ..+++++.-|...- ++....+.|+.+.++.++|. +.|=+|+|..+.++.+.
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GL-------------Dp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~ 204 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGL-------------DPESRREIWELLRELAKEGG-VTILLSTHILEEAEELC 204 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCC-------------CHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhC
Confidence 3444444444443 36888888886432 23346789999999999996 56999999999988875
Q ss_pred H
Q 028869 184 A 184 (202)
Q Consensus 184 ~ 184 (202)
+
T Consensus 205 d 205 (293)
T COG1131 205 D 205 (293)
T ss_pred C
Confidence 5
No 121
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.00 E-value=3.7e+02 Score=23.05 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCC--CC--CCHHHHHHHHHHHHHcCCccEEE
Q 028869 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDF--LP--MDFKSVWEAMEECQNLGYTKAIG 170 (202)
Q Consensus 95 ~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~l~~~G~ir~iG 170 (202)
.-+..+.+.+.+.++.. .+++++++.++.+. |.+.++-... ...... .. ...+..-.+++.|.+.|. ..++
T Consensus 160 GlPgqt~~~~~~~l~~~-~~l~~~~i~~y~l~-~~pgT~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~ 234 (377)
T PRK08599 160 ALPGQTIEDFKESLAKA-LALDIPHYSAYSLI-LEPKTVFYNL--MRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYE 234 (377)
T ss_pred CCCCCCHHHHHHHHHHH-HccCCCEEeeecee-ecCCChhHHH--HhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEee
Confidence 44567778888877764 56888888887654 2222220000 000000 00 111122236667778886 4789
Q ss_pred eCCCCHH
Q 028869 171 VSNFSCK 177 (202)
Q Consensus 171 vSn~~~~ 177 (202)
+|||...
T Consensus 235 ~~~fa~~ 241 (377)
T PRK08599 235 ISNFAKP 241 (377)
T ss_pred eeeeeCC
Confidence 9999843
No 122
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.93 E-value=3.9e+02 Score=23.21 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=6.4
Q ss_pred CHHHHHHHHHH
Q 028869 149 DFKSVWEAMEE 159 (202)
Q Consensus 149 ~~~~~~~~l~~ 159 (202)
+.++++-+|+.
T Consensus 232 ~lE~vv~~L~~ 242 (378)
T PRK11858 232 ALEEVVMALKY 242 (378)
T ss_pred cHHHHHHHHHH
Confidence 46666666653
No 123
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=28.59 E-value=2.5e+02 Score=20.97 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcC--CCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg--~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (202)
.|=.+.|+-|++...-.+..+++.+.++...+. +...|++++-.+... ..++.++-+.|..|.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~---------------~~~~~~l~~~l~~LL 112 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA---------------KASNPQLRDAFLRLL 112 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc---------------cCCHHHHHHHHHHHH
Confidence 455566777776556667888888888876542 233488888766432 234677778888877
Q ss_pred Hc
Q 028869 162 NL 163 (202)
Q Consensus 162 ~~ 163 (202)
++
T Consensus 113 ~k 114 (145)
T PRK04820 113 RR 114 (145)
T ss_pred HH
Confidence 66
No 124
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=28.41 E-value=1.5e+02 Score=22.21 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=50.9
Q ss_pred CChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH--cCCccEEEeCCCCH
Q 028869 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFSC 176 (202)
Q Consensus 99 ~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~ 176 (202)
.+.+.+.+.+++.-..+|++ +++++-.. -.+..+.+.+..+ .|.|-.=|--+|+.
T Consensus 25 ~tl~~i~~~~~~~a~~~g~~-v~~~QSN~----------------------EGelid~I~~a~~~~dgiIINpga~thtS 81 (140)
T PF01220_consen 25 TTLEDIEQKCKETAAELGVE-VEFFQSNH----------------------EGELIDWIHEARDDVDGIIINPGAYTHTS 81 (140)
T ss_dssp SHHHHHHHHHHHHHHHTTEE-EEEEE-SS----------------------HHHHHHHHHHHTCTTSEEEEE-GGGGHT-
T ss_pred CCHHHHHHHHHHHHHHCCCe-EEEEecCC----------------------HHHHHHHHHHHHhhCCEEEEccchhcccc
Confidence 45688999999999999965 66666332 3567888888765 45666668888888
Q ss_pred HHHHHHHHhCCCCCeeeeeeccc
Q 028869 177 KKLGDILATAKIPPAANQVSFLK 199 (202)
Q Consensus 177 ~~l~~l~~~~~~~p~~~Q~e~~~ 199 (202)
-.+..+++....| ++.+-+|.
T Consensus 82 ~Ai~DAl~~~~~P--~vEVHiSN 102 (140)
T PF01220_consen 82 IAIRDALKAISIP--VVEVHISN 102 (140)
T ss_dssp HHHHHHHHCCTS---EEEEESS-
T ss_pred HHHHHHHHcCCCC--EEEEEcCC
Confidence 8899888866543 44444443
No 125
>PRK13936 phosphoheptose isomerase; Provisional
Probab=28.34 E-value=83 Score=24.53 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCC
Q 028869 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (202)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~ 187 (202)
.++.+.++.++++| ++-|+++++....+.++...++
T Consensus 125 ~~~~~~~~~ak~~g-~~iI~IT~~~~s~l~~l~~~ad 160 (197)
T PRK13936 125 ANVIQAIQAAHERE-MHVVALTGRDGGKMASLLLPED 160 (197)
T ss_pred HHHHHHHHHHHHCC-CeEEEEECCCCChhhhhhccCC
Confidence 57899999999998 8999999998878887755454
No 126
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=28.22 E-value=38 Score=20.96 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.3
Q ss_pred CCCCCCeeecCCCCCccccceeeCCc
Q 028869 8 GSISIPDVPLKSSNRRMPVLGLGTAA 33 (202)
Q Consensus 8 ~~~~~~~~~l~~~~~~v~~lglG~~~ 33 (202)
+.+...-+.|+++|+.+|.+-+||.-
T Consensus 11 alPfs~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 11 ALPFSLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred hCCccccccccccccCCceeeecchH
Confidence 44556667788888999999999864
No 127
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=28.11 E-value=49 Score=24.32 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCcEEeCCCC
Q 028869 43 KLAILEAMKLGYRHFDTATL 62 (202)
Q Consensus 43 ~~~l~~A~~~Gi~~~Dta~~ 62 (202)
...+...++.|||+||.--.
T Consensus 29 ~~~i~~QL~~GiR~lDlrv~ 48 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLRVW 48 (146)
T ss_dssp SHHHHHHHHTT--EEEEEEE
T ss_pred hHhHHHHHhccCceEEEEEE
Confidence 36788999999999986443
No 128
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.85 E-value=2.9e+02 Score=21.43 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHcCCcEEeCCCCCC---C----hHHHHHHHHHHHhCCCCCCCCceEEeecc-----CCCCCChhhHHHH
Q 028869 40 ETTKLAILEAMKLGYRHFDTATLYQ---T----EQPLGDAIAEALSTGIIKSRDELFIASKL-----WCSDAHRELVVPA 107 (202)
Q Consensus 40 ~~~~~~l~~A~~~Gi~~~Dta~~Yg---~----e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-----~~~~~~~~~i~~~ 107 (202)
+++.+++-.++..|-..+=+...=. + ++++|++-+.+ + .-.-+-++|-. ...++.++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR---~---~lpaIaLt~dsS~lTai~NDy~yd~v--- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKER---P---SLPAIALSTDSSVLTAIANDYGYDEV--- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcC---C---CCCeeEeecccHHHhhhhccccHHHH---
Confidence 4566788888899999997765321 2 44455554422 1 11234455443 2345555554
Q ss_pred HHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhC
Q 028869 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 108 ~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~ 186 (202)
+.+..+.+|.. =|+++-=.+... -..+.++++..+++|.. -||++.-+-.++..+++..
T Consensus 99 FsRqveA~g~~-GDvLigISTSGN------------------S~nVl~Ai~~Ak~~gm~-vI~ltG~~GG~~~~~~D~~ 157 (176)
T COG0279 99 FSRQVEALGQP-GDVLIGISTSGN------------------SKNVLKAIEAAKEKGMT-VIALTGKDGGKLAGLLDVE 157 (176)
T ss_pred HHHHHHhcCCC-CCEEEEEeCCCC------------------CHHHHHHHHHHHHcCCE-EEEEecCCCcccccccceE
Confidence 44555677643 477664444221 35689999999999864 7999999988888887644
No 129
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.71 E-value=3.1e+02 Score=21.74 Aligned_cols=85 Identities=16% Similarity=0.038 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHHcCCc-EEeCCCCCCChHHH---------------------------------HHHHHHHHhCCCC
Q 028869 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPL---------------------------------GDAIAEALSTGII 82 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~-~~Dta~~Yg~e~~~---------------------------------g~~l~~~~~~~~~ 82 (202)
.-.+-+.++++.+-+.|+. .+||+..+. .+.+ -+.++.+.+
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~~-~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~---- 125 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDAP-ASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVS---- 125 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCC-HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHh----
Confidence 3455577888888899985 789987552 1111 122222211
Q ss_pred CCCCceEEeeccCCC-CCChhhHHHHHHHHHHHcCCCceeEeeeccC
Q 028869 83 KSRDELFIASKLWCS-DAHRELVVPALQKSLENLQLEYIDLYVIHWP 128 (202)
Q Consensus 83 ~~R~~~~I~tK~~~~-~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p 128 (202)
....+.|.+=+.+. +.+.+.+++ +-+.++.++++.++++=.|..
T Consensus 126 -~g~~v~iR~~vIPg~nd~~e~i~~-ia~~l~~l~~~~~~llpyh~~ 170 (213)
T PRK10076 126 -EGVNVIPRLPLIPGFTLSRENMQQ-ALDVLIPLGIKQIHLLPFHQY 170 (213)
T ss_pred -CCCcEEEEEEEECCCCCCHHHHHH-HHHHHHHcCCceEEEecCCcc
Confidence 11235555544444 234555554 445667788888999888863
No 130
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=27.49 E-value=2.1e+02 Score=25.51 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=56.8
Q ss_pred CCCceEEe-eccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCC-CCCCCHHHHHHHHHHHH
Q 028869 84 SRDELFIA-SKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKED-FLPMDFKSVWEAMEECQ 161 (202)
Q Consensus 84 ~R~~~~I~-tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~ 161 (202)
++.+++|. +-+++. +.+.+-.-+.+....|... .|+++-|+|++-.||.-...--... .-.-.-....+....|+
T Consensus 119 ~kG~LVIlEST~~PG--TTe~v~~plle~~sgL~~~-~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY 195 (436)
T COG0677 119 KKGDLVILESTTPPG--TTEEVVKPLLEERSGLKFG-EDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALY 195 (436)
T ss_pred CCCCEEEEecCCCCC--cHHHHHHHHHhhcCCCccc-ceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHH
Confidence 56666654 444443 3356666665555556654 7999999999998865333221100 00111234556666666
Q ss_pred HcCCccEEEeCCCCHHHHHHHHHh
Q 028869 162 NLGYTKAIGVSNFSCKKLGDILAT 185 (202)
Q Consensus 162 ~~G~ir~iGvSn~~~~~l~~l~~~ 185 (202)
+.=.-+-+=+++-...++.++++-
T Consensus 196 ~~iv~~~~~vts~~tAEm~Kl~EN 219 (436)
T COG0677 196 KTIVEGVIPVTSARTAEMVKLTEN 219 (436)
T ss_pred HHheEEEEEcCChHHHHHHHHHhh
Confidence 654444577777777777777663
No 131
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=27.12 E-value=4.1e+02 Score=22.94 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCc
Q 028869 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (202)
Q Consensus 62 ~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~ 141 (202)
.||.+..+-+++++..+.- +.+-++|.+-.-+ ..--+++..-+++.-++.+ +.++.+|.|.......
T Consensus 68 V~Gg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~-~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------ 134 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF---PPKAIFVYSTCPT-GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQ------ 134 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC---CCCEEEEECCCch-hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcc------
Confidence 4678888888888765432 3445666665432 2222445555555444444 6788888875432100
Q ss_pred cCCCCCCCHHHHHHHHHHHH---------HcCCccEEEeCCC--CHHHHHHHHHhCCCCC
Q 028869 142 KEDFLPMDFKSVWEAMEECQ---------NLGYTKAIGVSNF--SCKKLGDILATAKIPP 190 (202)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvSn~--~~~~l~~l~~~~~~~p 190 (202)
......++++|-+.. +++.|--||..++ +..++.++++..++.+
T Consensus 135 -----~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 135 -----SLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV 189 (406)
T ss_pred -----cHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE
Confidence 112444566655443 2345777887766 3478888998776544
No 132
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=27.09 E-value=3.4e+02 Score=22.01 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=42.7
Q ss_pred ChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 100 ~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
+.+.+.+..++.+ .-|.+.+|+-. ....|+....+.+ ...+.....++.+.+.-.+ -|.|-+++++.+
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~----~st~p~~~~~~~~------~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~ 89 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGG----ESTRPGAEPVSVE------EELERVIPVLRALAGEPDV-PISVDTFNAEVA 89 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECC----CcCCCCCCcCCHH------HHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHH
Confidence 4445555444443 55888888843 1111211110000 0123344555555554222 378888889888
Q ss_pred HHHHHhCCCCCeeeee
Q 028869 180 GDILATAKIPPAANQV 195 (202)
Q Consensus 180 ~~l~~~~~~~p~~~Q~ 195 (202)
++.++.+ .+.+|=+
T Consensus 90 ~aaL~~g--~~iINdi 103 (258)
T cd00423 90 EAALKAG--ADIINDV 103 (258)
T ss_pred HHHHHhC--CCEEEeC
Confidence 8888876 4555543
No 133
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=27.04 E-value=3.6e+02 Score=22.20 Aligned_cols=139 Identities=10% Similarity=0.007 Sum_probs=74.9
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCC----------CCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTA----------TLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVV 105 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~ 105 (202)
.+.++..+..+.+.++|+..||.- ..|+ +.+.+.+.++... ..-++-|..|+.+.. +.+.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr------~~~~~Pv~vKl~~~~---~~~~ 169 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK------KATDVPVIVKLTPNV---TDIV 169 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH------hccCCCEEEEeCCCc---hhHH
Confidence 456777788888888999999872 2333 4556666666541 111567888875432 2222
Q ss_pred HHHHHHHHHcCCCceeEeee-ccC--CCCCCCCCCCCCccCCCC-CCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHH
Q 028869 106 PALQKSLENLQLEYIDLYVI-HWP--VSSKPGSYEFPIKKEDFL-PMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (202)
Q Consensus 106 ~~~~~sL~~Lg~~~vDl~~l-h~p--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~ 180 (202)
.+-+.+...|++.+++.-. +.. +.....+.. ......+. .....-.|+.+.++++.=.+.=||+... +++.+.
T Consensus 170 -~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~-~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 170 -EIARAAEEAGADGLTLINTLKGMAIDIETRKPIL-GNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred -HHHHHHHHcCCCEEEEECCCcccccccccCceee-cCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 2334566788777665310 000 110000000 00000000 0011235677777777656788888887 578888
Q ss_pred HHHHhC
Q 028869 181 DILATA 186 (202)
Q Consensus 181 ~l~~~~ 186 (202)
++++.+
T Consensus 248 ~~l~~G 253 (296)
T cd04740 248 EFLMAG 253 (296)
T ss_pred HHHHcC
Confidence 888743
No 134
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=26.77 E-value=4.1e+02 Score=22.76 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=67.4
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++..++++.+.+.|+..|..+..-. -...+-+.++...+.|. .+.|.|.... .+.+ .-+.|...
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~g~-----~~~i~TNG~l--l~~~-----~~~~L~~~ 113 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHARELGL-----YTNLITSGVG--LTEA-----RLAALKDA 113 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHcCC-----cEEEECCCcc--CCHH-----HHHHHHHc
Confidence 6778888999999999998887543111 11123344544421121 2345554321 2222 22335556
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCCC--CCCHHHHHHHHHHHHHcCCcc--EEEeCCCCHHHHHHHHHhC
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFL--PMDFKSVWEAMEECQNLGYTK--AIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~G~ir--~iGvSn~~~~~l~~l~~~~ 186 (202)
|++.+-+ -++.++.... +... .-.++.+.++++.|++.|.-- ...++..+..++.++++.+
T Consensus 114 g~~~v~i-Sldg~~~e~~---------d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~ 178 (378)
T PRK05301 114 GLDHIQL-SFQDSDPELN---------DRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELA 178 (378)
T ss_pred CCCEEEE-EecCCCHHHH---------HHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHH
Confidence 6554333 2222211100 0000 113788899999999988421 2345777888887777754
No 135
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.61 E-value=2.9e+02 Score=21.01 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHHHHHH-HcCCcEEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeec
Q 028869 42 TKLAILEAM-KLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (202)
Q Consensus 42 ~~~~l~~A~-~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK 93 (202)
....+...+ +.|++.....-.-..+..+-++|+.+. .+.+++|+|=
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~------~~~dlVIttG 66 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS------ERADLVITTG 66 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH------hCCCEEEECC
Confidence 344444444 779887665444346677888887652 4667888873
No 136
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=26.41 E-value=2.4e+02 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=23.0
Q ss_pred ccEEEeC-CCCHHHHHHHHHhCCCCCeeeeee
Q 028869 166 TKAIGVS-NFSCKKLGDILATAKIPPAANQVS 196 (202)
Q Consensus 166 ir~iGvS-n~~~~~l~~l~~~~~~~p~~~Q~e 196 (202)
++.+||. |-+++.+.++++.+ .++++|+.
T Consensus 307 v~~VgVfv~~~~~~i~~i~~~~--~lD~vQLH 336 (454)
T PRK09427 307 LRYVGVFRNADIEDIVDIAKQL--SLAAVQLH 336 (454)
T ss_pred CCEEEEEeCCCHHHHHHHHHHc--CCCEEEeC
Confidence 8889997 88888998888855 55777764
No 137
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=26.16 E-value=4.7e+02 Score=23.23 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCcEEeCCCCCC------------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 028869 44 LAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg------------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 111 (202)
+.++...++|++.+-.+-.-. +...+-++++.+.+.|. . .+-+..-+.-+..+.+.+.+.++..
T Consensus 152 e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~--~--~v~~dli~GlPgqt~e~~~~tl~~~ 227 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGF--T--SINIDLIYGLPKQTKESFAKTLEKV 227 (455)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC--C--cEEEeEEeeCCCCCHHHHHHHHHHH
Confidence 444555566888775443222 22223345554433342 1 1222222344566778888888765
Q ss_pred HHHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHH---HHHH-HHHHHHHcCCccEEEeCCCCHH
Q 028869 112 LENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFK---SVWE-AMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
++ ++.+++.++.+- .|.....+. ........+.+ +.++ +.+.|.+.|. ..++++||...
T Consensus 228 ~~-l~~~~is~y~L~~~p~~~~~~~-----~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~~ 291 (455)
T TIGR00538 228 AE-LNPDRLAVFNYAHVPWVKPAQR-----KIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAKP 291 (455)
T ss_pred Hh-cCCCEEEEecCccccchhHHHh-----cccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 54 899999988762 231100000 00000001122 2233 3445666776 67999999964
No 138
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=26.14 E-value=3.2e+02 Score=24.97 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=61.2
Q ss_pred eeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHH
Q 028869 29 LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (202)
Q Consensus 29 lG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 106 (202)
|++--+++.+.+.+.+++.....+|.+.|-.++.-| +-..+|+-++. ++.+.. -|+++.|++++.+... .-.+
T Consensus 193 FSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y-~~tn~~-~~e~v~Is~HcHND~G---~a~A 267 (560)
T KOG2367|consen 193 FSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEY-LKTNTP-GREKVCISTHCHNDLG---CATA 267 (560)
T ss_pred ECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHH-HHccCC-CceeEEEEEeecCCcc---HHHH
Confidence 444444557888899999999999999998777777 56667777654 333433 6899999999866533 1111
Q ss_pred HHHHHHHHcCCCceeEeeeccC
Q 028869 107 ALQKSLENLQLEYIDLYVIHWP 128 (202)
Q Consensus 107 ~~~~sL~~Lg~~~vDl~~lh~p 128 (202)
.-+ +=..-|.+++|.-++-.-
T Consensus 268 nt~-~g~~AGA~~VE~~i~GiG 288 (560)
T KOG2367|consen 268 NTE-LGLLAGARQVEVTINGIG 288 (560)
T ss_pred HHH-HHhhcCcceEEEEeeccc
Confidence 111 111226677887766543
No 139
>PRK09061 D-glutamate deacylase; Validated
Probab=26.04 E-value=5e+02 Score=23.53 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCcEEeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCC-ChhhHHHHHHHHHH---H
Q 028869 42 TKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDA-HRELVVPALQKSLE---N 114 (202)
Q Consensus 42 ~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i~~~~~~sL~---~ 114 (202)
..++++.|++.|+..|=+...|. +...+-..++.+ .+.+..|..++..... +......++++.++ .
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 56778888999999997765562 444555555554 3445677777644322 11222333444443 4
Q ss_pred cCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 028869 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (202)
Q Consensus 115 Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 175 (202)
.|. -+.+.|--.... ....+..+.+++++++|.--..-++-|.
T Consensus 244 ~G~---rv~IsHlss~g~---------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TGA---HMHICHVNSTSL---------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hCC---CEEEEeeccCCc---------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 443 244555432110 1256788899999999865555555444
No 140
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=25.94 E-value=3.2e+02 Score=21.29 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCC----------CCCC-----ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCCh
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTA----------TLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg-----~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 101 (202)
.++++..+..+.+.++|+..+|.- ..|| ..+.+-+.++...+ .. . +-|+.|+.......
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~--~---~~v~vk~r~~~~~~ 137 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AV--P---IPVTVKIRLGWDDE 137 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hc--C---CCEEEEEeeccCCc
Confidence 357778888888889999999763 3455 33445555554311 11 1 44566653221111
Q ss_pred hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHH
Q 028869 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~ 180 (202)
+...+. -..|...|+ |.+.+|....... . . ....|+.+.++++.-.+.=++.... +.+++.
T Consensus 138 ~~~~~~-~~~l~~~Gv---d~i~v~~~~~~~~-~-----------~--~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~ 199 (231)
T cd02801 138 EETLEL-AKALEDAGA---SALTVHGRTREQR-Y-----------S--GPADWDYIAEIKEAVSIPVIANGDIFSLEDAL 199 (231)
T ss_pred hHHHHH-HHHHHHhCC---CEEEECCCCHHHc-C-----------C--CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 123222 233455675 5556675432110 0 0 0113566777777766776776666 578888
Q ss_pred HHHHhC
Q 028869 181 DILATA 186 (202)
Q Consensus 181 ~l~~~~ 186 (202)
++++..
T Consensus 200 ~~l~~~ 205 (231)
T cd02801 200 RCLEQT 205 (231)
T ss_pred HHHHhc
Confidence 888763
No 141
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=25.93 E-value=85 Score=29.52 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.7
Q ss_pred HHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccE
Q 028869 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKA 168 (202)
Q Consensus 110 ~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 168 (202)
-.|+.||++ |++.++++++.. .+....+|+.|+..|-+..
T Consensus 413 L~Lkalgi~--d~l~F~f~d~P~-----------------~~~l~~AL~~L~~lgald~ 452 (674)
T KOG0922|consen 413 LQLKALGIN--DPLRFPFIDPPP-----------------PEALEEALEELYSLGALDD 452 (674)
T ss_pred HHHHhcCCC--CcccCCCCCCCC-----------------hHHHHHHHHHHHhcCcccC
Confidence 347899988 899989887543 4678899999998777663
No 142
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=25.86 E-value=3.2e+02 Score=22.69 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=70.6
Q ss_pred eeecCCCCCccccceeeCCcCCCCChhHHHHHHHHHH-HcCCcE-------EeCCCCCCChHHHHHHHHHHHhCCCCCCC
Q 028869 14 DVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAM-KLGYRH-------FDTATLYQTEQPLGDAIAEALSTGIIKSR 85 (202)
Q Consensus 14 ~~~l~~~~~~v~~lglG~~~~~~~~~~~~~~~l~~A~-~~Gi~~-------~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R 85 (202)
...+++. .-=|++-+||..+. +. +++..|+ .+|... +|....- .+..+=..| +.
T Consensus 7 ~l~i~g~-~f~SRL~lGTgky~--s~----~~~~~ai~aSg~evvTvalRR~~~~~~~-~~~~~l~~i----------~~ 68 (267)
T CHL00162 7 KLKIGNK-SFNSRLMLGTGKYK--SL----KDAIQSIEASGCEIVTVAIRRLNNNLLN-DNSNLLNGL----------DW 68 (267)
T ss_pred ceEECCE-EeecceEEecCCCC--CH----HHHHHHHHHhCCcEEEEEEEEeccCcCC-CcchHHHhh----------ch
Confidence 3455544 33489999999875 33 4445555 345544 4432101 111222222 22
Q ss_pred CceEEeeccCCCCCChhhHHHHHHHHHHHc------CCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHH
Q 028869 86 DELFIASKLWCSDAHRELVVPALQKSLENL------QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE 159 (202)
Q Consensus 86 ~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L------g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (202)
..+.+--... ...+.++-.+..+-..+.+ +++++-|=.+..+....| +..+++++-+.
T Consensus 69 ~~~~~LPNTa-Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlP---------------D~~etl~Aae~ 132 (267)
T CHL00162 69 NKLWLLPNTA-GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLP---------------DPIGTLKAAEF 132 (267)
T ss_pred hccEECCcCc-CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCC---------------ChHHHHHHHHH
Confidence 3332221111 1223334333343344544 677777766554444433 46799999999
Q ss_pred HHHcCCccEEEeCCCCHHHHHHHHHh
Q 028869 160 CQNLGYTKAIGVSNFSCKKLGDILAT 185 (202)
Q Consensus 160 l~~~G~ir~iGvSn~~~~~l~~l~~~ 185 (202)
|.++|-+- +--+|-++-..+++.+.
T Consensus 133 Lv~eGF~V-lPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 133 LVKKGFTV-LPYINADPMLAKHLEDI 157 (267)
T ss_pred HHHCCCEE-eecCCCCHHHHHHHHHc
Confidence 99999752 34455555555566554
No 143
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.74 E-value=4.1e+02 Score=22.47 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=67.2
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++..++++.+.+.|+..+.-+..-. -...+-+.++.+.+.| -.+.|.|... -.+.+. -+.|...
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~g-----~~~~l~TNG~--ll~~e~-----~~~L~~~ 104 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRLG-----LYTNLITSGV--GLTEAR-----LDALADA 104 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHcC-----CeEEEEeCCc--cCCHHH-----HHHHHhC
Confidence 5778888999999999988776542111 1122334554442112 1244555432 122222 2334455
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCcc--EEEeCCCCHHHHHHHHHhC
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK--AIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir--~iGvSn~~~~~l~~l~~~~ 186 (202)
|++.+.+ -++.++.... +. ... ..-.++.+.+++..+++.|.-- ...++..+..++.++++.+
T Consensus 105 g~~~v~i-Sldg~~~e~~-----d~-~rg-~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~ 169 (358)
T TIGR02109 105 GLDHVQL-SFQGVDEALA-----DR-IAG-YKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELA 169 (358)
T ss_pred CCCEEEE-eCcCCCHHHH-----HH-hcC-CccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHH
Confidence 6554432 2233221100 00 000 0113677888888999888421 2355788888888777765
No 144
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=25.27 E-value=4.6e+02 Score=22.85 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred CCCCCChhhHHHHHHHHHHHcCCCceeEeeecc-CCCCC-----CCCCCCCCccCCCCCCCHHHHHH-HHHHHHHcCCcc
Q 028869 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHW-PVSSK-----PGSYEFPIKKEDFLPMDFKSVWE-AMEECQNLGYTK 167 (202)
Q Consensus 95 ~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~-p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~G~ir 167 (202)
.-+..+.+.+.+.++..++ |+.+++.++.+.- |.... .+....|. .....+.++ +.+.|.+.|..
T Consensus 170 GlPgqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~------~~~~~~~~~~~~~~L~~~Gy~- 241 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPH------SDAAAEMYEWTNHYLESKKYF- 241 (390)
T ss_pred CCCCCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCC------hHHHHHHHHHHHHHHHHcCCc-
Confidence 4556777888888888875 7889999987763 22100 01111010 001122333 34456677875
Q ss_pred EEEeCCCCHH
Q 028869 168 AIGVSNFSCK 177 (202)
Q Consensus 168 ~iGvSn~~~~ 177 (202)
++++|||...
T Consensus 242 ~yeis~fa~~ 251 (390)
T PRK06582 242 RYEISNYAKI 251 (390)
T ss_pred eeeceeeeCC
Confidence 5899999853
No 145
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.23 E-value=4.3e+02 Score=22.53 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCccEEEeCCC-CHHHHHHHHHhCC
Q 028869 154 WEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAK 187 (202)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvSn~-~~~~l~~l~~~~~ 187 (202)
|+....+++.=++-=|++.++ +++.++++++...
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~ 308 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGH 308 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCC
Confidence 455555555545666777765 6888999988654
No 146
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=25.22 E-value=2.8e+02 Score=23.12 Aligned_cols=64 Identities=23% Similarity=0.162 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHH
Q 028869 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (202)
Q Consensus 105 ~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~ 184 (202)
+..+-+.|.++|++++++-.+..|.. .| . ..+.++.+..+.+...++...++ -+...++++++
T Consensus 28 k~~ia~~L~~~Gv~~IEvgsf~~p~~-~p-------------~--~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~ 90 (287)
T PRK05692 28 KIALIDRLSAAGLSYIEVASFVSPKW-VP-------------Q--MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALA 90 (287)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCccc-cc-------------c--cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHH
Confidence 34455668899999999874444421 11 1 22345666666554445555554 46777777776
Q ss_pred h
Q 028869 185 T 185 (202)
Q Consensus 185 ~ 185 (202)
.
T Consensus 91 ~ 91 (287)
T PRK05692 91 A 91 (287)
T ss_pred c
Confidence 4
No 147
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.13 E-value=94 Score=19.67 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCC
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFS 175 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~ 175 (202)
...+=..|+.|+++|+|+.+...+..
T Consensus 28 ~~~ve~mL~~l~~kG~I~~~~~~~~~ 53 (69)
T PF09012_consen 28 PEAVEAMLEQLIRKGYIRKVDMSSCC 53 (69)
T ss_dssp HHHHHHHHHHHHCCTSCEEEEEE--S
T ss_pred HHHHHHHHHHHHHCCcEEEecCCCCC
Confidence 45566778899999999999877653
No 148
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.07 E-value=2.6e+02 Score=22.35 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=42.0
Q ss_pred CChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcC-CccEEEeCCCCHH
Q 028869 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCK 177 (202)
Q Consensus 99 ~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~ 177 (202)
++.+...+ +-..|..+|++++++-..-.+... | ...+.++.++.+.+.+ .++...++.-...
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~-p---------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAV-P---------------QMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCcccc-c---------------cCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 34444444 344477889988888655433111 1 1235678888888887 5666566665566
Q ss_pred HHHHHHHh
Q 028869 178 KLGDILAT 185 (202)
Q Consensus 178 ~l~~l~~~ 185 (202)
.++.+.+.
T Consensus 79 ~i~~a~~~ 86 (265)
T cd03174 79 GIERALEA 86 (265)
T ss_pred hHHHHHhC
Confidence 66666654
No 149
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=25.01 E-value=1.2e+02 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=26.6
Q ss_pred HHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 028869 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI 169 (202)
Q Consensus 111 sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 169 (202)
.++.||+| +|=+++..|+. .+++++.+++|.+.|.+.-|
T Consensus 97 ~a~~lGvd-l~rllv~~P~~-------------------~E~al~~~e~lirsg~~~lV 135 (322)
T PF00154_consen 97 YAESLGVD-LDRLLVVQPDT-------------------GEQALWIAEQLIRSGAVDLV 135 (322)
T ss_dssp HHHHTT---GGGEEEEE-SS-------------------HHHHHHHHHHHHHTTSESEE
T ss_pred HHHhcCcc-ccceEEecCCc-------------------HHHHHHHHHHHhhcccccEE
Confidence 45678988 44455555753 67899999999999988766
No 150
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=24.87 E-value=4.9e+02 Score=23.07 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=65.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCC-CceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCC
Q 028869 61 TLYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFP 139 (202)
Q Consensus 61 ~~Yg~e~~~g~~l~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~ 139 (202)
..||.+.-+-++|+...+.. ++ +-++|.+-+.. ...-+++..-+++.-++++ +.++.+|.|+..... .
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~-~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~--~-- 165 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPT-GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVS--Q-- 165 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC---CccceEEEECCChH-HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCc--c--
Confidence 34788888888888776543 34 55677665432 2223455555555545555 678888988653210 0
Q ss_pred CccCCCCCCCHHHHHHH-HHHHH--------HcCCccEEEeCCCC--HHHHHHHHHhCCCCCe
Q 028869 140 IKKEDFLPMDFKSVWEA-MEECQ--------NLGYTKAIGVSNFS--CKKLGDILATAKIPPA 191 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-l~~l~--------~~G~ir~iGvSn~~--~~~l~~l~~~~~~~p~ 191 (202)
......+.++ ++.+. ++++|-=||-.++. .+.+.++++..++++.
T Consensus 166 -------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 166 -------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred -------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 0112333443 23343 24667777755543 4678888888776654
No 151
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=24.75 E-value=3.6e+02 Score=21.49 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHHh
Q 028869 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILAT 185 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~ 185 (202)
....++...+++ ||+|+|+.+++.++.+.
T Consensus 95 ~~ar~~~~~~~i--IG~S~h~~eea~~A~~~ 123 (211)
T COG0352 95 AEARELLGPGLI--IGLSTHDLEEALEAEEL 123 (211)
T ss_pred HHHHHhcCCCCE--EEeecCCHHHHHHHHhc
Confidence 444555566665 99999999998888875
No 152
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.61 E-value=58 Score=32.45 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEeC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDT 59 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dt 59 (202)
.+.+++.+-..++++.|..-|+-
T Consensus 386 ~~~~ea~~ka~~~~~~~~~~~~~ 408 (1050)
T TIGR01369 386 RTFEEALQKALRSLEIGATGFDL 408 (1050)
T ss_pred CCHHHHHHHHHHHhccCCCCCCc
Confidence 56788888888888888776653
No 153
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.55 E-value=5.4e+02 Score=23.42 Aligned_cols=106 Identities=11% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCcc
Q 028869 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK 142 (202)
Q Consensus 63 Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~ 142 (202)
+|.++.+-++|+...+.- +.+-++|.+-+.+ ..--+++..-+++.-..++ ++++.+|.|.....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~-eiIGDDi~~v~~~~~~~~~---~pVi~v~t~~f~g~--------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTS-SILQEDLQNFVDRASIESD---SDVILADVNHYRVN--------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCch-hhhhcCHHHHHHHhhcccC---CCEEEeCCCCCccc---------
Confidence 356666666776653322 3445556555422 2222333333333322333 58899998854311
Q ss_pred CCCCCCCHHHHHHHHHHHH------------------HcCCccEEEeCC------CCHHHHHHHHHhCCCCC
Q 028869 143 EDFLPMDFKSVWEAMEECQ------------------NLGYTKAIGVSN------FSCKKLGDILATAKIPP 190 (202)
Q Consensus 143 ~~~~~~~~~~~~~~l~~l~------------------~~G~ir~iGvSn------~~~~~l~~l~~~~~~~p 190 (202)
.......+++.++ .+++|-=||.++ .+...+.++++..++.+
T Consensus 131 ------~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 131 ------ELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred ------HHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 0112222233222 235677888774 45677888888776543
No 154
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.53 E-value=3.8e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=-0.084 Sum_probs=14.6
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ 64 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 64 (202)
.+++...++++.+.+.|+..|=.++.+|
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G 163 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVG 163 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 4455555555555555555554444444
No 155
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.36 E-value=1.6e+02 Score=28.73 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCc--eeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHH
Q 028869 107 ALQKSLENLQLEY--IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 107 ~~~~sL~~Lg~~~--vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
++.-+|..+=... ++++++.-|.... +.-....+.++|+.+... ++.|||-+|...
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~L-------------D~e~l~~l~~~l~~i~~~--~~qiiIISH~ee 884 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTL-------------DEERLEKLAEILEELLSD--GRQIIIISHVEE 884 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCC-------------CHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 4555555554455 9999999886432 122367788888888888 889999998863
No 156
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=24.34 E-value=4.3e+02 Score=22.21 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHH
Q 028869 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 181 (202)
++-.+.-++-|+++++..-|++.==...-.+| -+..+|+..++.|- +.||+||-.-..+.+
T Consensus 112 ED~~~~g~~dl~~~~lt~~DvvvgIaASGrTP------------------Yvigal~yAr~~Ga-~Ti~iacNp~s~i~~ 172 (298)
T COG2103 112 EDDEELGEADLKNIGLTAKDVVVGIAASGRTP------------------YVIGALEYARQRGA-TTIGIACNPGSAISR 172 (298)
T ss_pred cccHHHHHHHHHHcCCCcCCEEEEEecCCCCc------------------hhhHHHHHHHhcCC-eEEEeecCCCchhhh
Confidence 44556677888999999999987554433333 25689999999986 489999988777666
Q ss_pred HHH
Q 028869 182 ILA 184 (202)
Q Consensus 182 l~~ 184 (202)
..+
T Consensus 173 ~Ad 175 (298)
T COG2103 173 IAD 175 (298)
T ss_pred hcC
Confidence 554
No 157
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=23.96 E-value=1.1e+02 Score=25.94 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCC---cEEeCCCCCC---C-hHHHHHHHHH
Q 028869 40 ETTKLAILEAMKLGY---RHFDTATLYQ---T-EQPLGDAIAE 75 (202)
Q Consensus 40 ~~~~~~l~~A~~~Gi---~~~Dta~~Yg---~-e~~~g~~l~~ 75 (202)
.++.++++.|-+.|. +||||+..|. . |+.-++++..
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~ 179 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIAR 179 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHH
Confidence 346788888889886 7999999995 2 4455555544
No 158
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=23.71 E-value=1.4e+02 Score=25.31 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=47.2
Q ss_pred HcCCcEEeCCCCCC------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCCh-hhHHHHHHHHHHHcCCCceeEe
Q 028869 51 KLGYRHFDTATLYQ------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR-ELVVPALQKSLENLQLEYIDLY 123 (202)
Q Consensus 51 ~~Gi~~~Dta~~Yg------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~-~~i~~~~~~sL~~Lg~~~vDl~ 123 (202)
++..-.|=-+..|- .-..++++|++. +-..+||+.-+..+..+. -.....++...+.++-..+|.+
T Consensus 175 ~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s-------~a~kV~v~N~~~~~get~~~~~~d~v~~i~~~~~~~~~d~v 247 (308)
T cd07187 175 EADLIVYGPGSLYTSILPNLLVKGIAEAIRAS-------KAPKVYICNLMTQPGETDGFTLSDHVRALLRHLGEGLLDVV 247 (308)
T ss_pred hCCEEEECCCccHHHhhhhcCchhHHHHHHhC-------CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 44454554444554 244578888765 667788876654332222 3677788888888887889999
Q ss_pred eeccCC
Q 028869 124 VIHWPV 129 (202)
Q Consensus 124 ~lh~p~ 129 (202)
+++..+
T Consensus 248 lv~~~~ 253 (308)
T cd07187 248 LVNSER 253 (308)
T ss_pred EECCCC
Confidence 998654
No 159
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.70 E-value=4.7e+02 Score=22.41 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHH-----------------HHHHHHhCCCCCCCCceEEeeccCCCCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGD-----------------AIAEALSTGIIKSRDELFIASKLWCSDA 99 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~-----------------~l~~~~~~~~~~~R~~~~I~tK~~~~~~ 99 (202)
.+.+....+.+.+-+.|+.+|-|...-.+-..+-+ .|+.. .. ....++|+|=. .
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~---A~--~gkPvilStGm----a 143 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKI---AR--FGKPVILSTGM----A 143 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHH---Hh--cCCcEEEECCC----C
Confidence 56788888889999999999966543211111100 11211 10 33446666554 2
Q ss_pred ChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 100 ~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
+.+.+..+++...+. |.+.-++.++|+...+ | ...++ .+ +.++..|++.=. .-||.|.|+....
T Consensus 144 tl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~Y-P------~~~~~---~n----L~~I~~Lk~~f~-~pVG~SdHt~G~~ 207 (329)
T TIGR03569 144 TLEEIEAAVGVLRDA-GTPDSNITLLHCTTEY-P------APFED---VN----LNAMDTLKEAFD-LPVGYSDHTLGIE 207 (329)
T ss_pred CHHHHHHHHHHHHHc-CCCcCcEEEEEECCCC-C------CCccc---CC----HHHHHHHHHHhC-CCEEECCCCccHH
Confidence 568888888887643 4321258999986432 2 11111 12 244444444322 3599999997654
Q ss_pred HHHHHh
Q 028869 180 GDILAT 185 (202)
Q Consensus 180 ~~l~~~ 185 (202)
..+...
T Consensus 208 ~~~aAv 213 (329)
T TIGR03569 208 APIAAV 213 (329)
T ss_pred HHHHHH
Confidence 444443
No 160
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=23.59 E-value=1.5e+02 Score=18.48 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHcCCccEEE
Q 028869 149 DFKSVWEAMEECQNLGYTKAIG 170 (202)
Q Consensus 149 ~~~~~~~~l~~l~~~G~ir~iG 170 (202)
+...+.+.|..|.++|.|...+
T Consensus 35 ~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 35 SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEc
Confidence 3678999999999999998876
No 161
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.57 E-value=6.2e+02 Score=24.13 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC-----ChHHHHHHHHHHHhCCCCCCCCceEEee--ccCCC------C-----
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIAS--KLWCS------D----- 98 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-----~e~~~g~~l~~~~~~~~~~~R~~~~I~t--K~~~~------~----- 98 (202)
.|.++..+.++...+.|+.-|=.+..+. +|..+++.+++. - .++.|++ ++++. .
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~-------~-~~i~V~~shev~p~~~~~eR~~Tavl 207 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREI-------G-PDIPVSLSHEVSPEIGEYERANTAVL 207 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHh-------c-CCceEEechhcchhcCcccchhhhee
Confidence 6888899999999999999887766543 699999999986 3 4455655 66541 1
Q ss_pred ---CC--hhhHHHHHHHHHHHcCCCceeEeeeccCC
Q 028869 99 ---AH--RELVVPALQKSLENLQLEYIDLYVIHWPV 129 (202)
Q Consensus 99 ---~~--~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~ 129 (202)
.. .....++++..|+.-|.+ ..++++.+..
T Consensus 208 nA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 208 NAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred eeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 11 244566677777777765 6777777654
No 162
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=23.45 E-value=3.4e+02 Score=21.17 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=54.5
Q ss_pred HcCCcEEeCCCCCC---ChHHHHH---HHHHHHhCCCCCCCCceEEeecc---CC--------CCCChhhHHHHHHHHHH
Q 028869 51 KLGYRHFDTATLYQ---TEQPLGD---AIAEALSTGIIKSRDELFIASKL---WC--------SDAHRELVVPALQKSLE 113 (202)
Q Consensus 51 ~~Gi~~~Dta~~Yg---~e~~~g~---~l~~~~~~~~~~~R~~~~I~tK~---~~--------~~~~~~~i~~~~~~sL~ 113 (202)
..++-++||-..-. ++...|+ +++..+++ .|-++.|.+.= |. ...++..+.+-+++.|.
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~----~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~ 153 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE----YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLE 153 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh----cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHH
Confidence 45899999965421 2333331 23333222 57777776552 22 12356788888999999
Q ss_pred HcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcC
Q 028869 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG 164 (202)
Q Consensus 114 ~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 164 (202)
+-+..|+-+ ..++.... ...+.++.+++...+
T Consensus 154 ~~~~~~v~i---~~~~y~eR----------------~~~~~~aV~ell~~~ 185 (187)
T COG3172 154 ENNIPFVVI---EGEDYLER----------------YLQAVEAVEELLGEK 185 (187)
T ss_pred HhCCcEEEE---cCCCHHHH----------------HHHHHHHHHHHHhcc
Confidence 988776544 44432221 566788888887765
No 163
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.36 E-value=2.4e+02 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHHhCCCCCeeeeeecccCc
Q 028869 153 VWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIPPAANQVSFLKKY 201 (202)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~l~~~~~~~p~~~Q~e~~~~~ 201 (202)
....++.|.+.|-.+.+=|+ .|..+-+++.+..... ..++-+||.|
T Consensus 34 i~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~---~~~iv~N~~y 80 (239)
T COG1213 34 IYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPF---NAKIVINSDY 80 (239)
T ss_pred HHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCc---ceEEEeCCCc
Confidence 56889999999999988888 8999999999886532 6777777766
No 164
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=23.26 E-value=4.2e+02 Score=24.78 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHcCCCceeEeeec-cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHHhCCCCC
Q 028869 113 ENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIPP 190 (202)
Q Consensus 113 ~~Lg~~~vDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~l~~~~~~~p 190 (202)
..+|+|++=+++.. .|.. .+.+...+.+.+......++.+||. |-+++.+.++.+.. .+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~-----------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~--~l 80 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRF-----------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKN--GI 80 (610)
T ss_pred HHcCCCEEEEEecCCCCCC-----------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhc--CC
Confidence 45899998887533 2321 2233313444443333457789995 88889998888755 45
Q ss_pred eeeeee
Q 028869 191 AANQVS 196 (202)
Q Consensus 191 ~~~Q~e 196 (202)
+++|+.
T Consensus 81 d~vQLH 86 (610)
T PRK13803 81 DFVQLH 86 (610)
T ss_pred CEEEEC
Confidence 677763
No 165
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=23.17 E-value=58 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=20.9
Q ss_pred CccccceeeCCcCCCCChhHHHHHHHHHHH
Q 028869 22 RRMPVLGLGTAASPFSGSETTKLAILEAMK 51 (202)
Q Consensus 22 ~~v~~lglG~~~~~~~~~~~~~~~l~~A~~ 51 (202)
+-+|.||-|... .+.+++.+++..+++
T Consensus 107 IA~P~igtG~~g---~~~~~~a~i~~~~i~ 133 (133)
T cd03330 107 VAFPAMGTGVGG---LPKEDVARLMVEVIE 133 (133)
T ss_pred EEECcccccCCC---CCHHHHHHHHHHHhC
Confidence 678888888776 568888888887763
No 166
>PRK12435 ferrochelatase; Provisional
Probab=23.10 E-value=4.6e+02 Score=22.14 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHc-CCccEEEe-C-CCCHHH
Q 028869 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAIGV-S-NFSCKK 178 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGv-S-n~~~~~ 178 (202)
..+.+..+...++||....++.+--.. ..+++|..| .+-+.|++|.++ |. |.|=| + .|-.++
T Consensus 197 ~q~~~t~~~v~~~l~~~~~~l~yQSr~--~g~~~WL~P------------~t~d~l~~l~~~~G~-k~v~vvpigFvsDh 261 (311)
T PRK12435 197 DQLEETADLIAEQANVEHYAIGWQSEG--NTPDPWLGP------------DVQDLTRDLYEEHGY-KSFIYTPVGFVAEH 261 (311)
T ss_pred HHHHHHHHHHHHHcCCCCCeEeeecCC--CCCCCCCCC------------CHHHHHHHHHHhcCC-ceEEEECCchhhhh
Confidence 556666666667887654333222210 123344433 244688888877 75 33322 2 344555
Q ss_pred HHHHHH
Q 028869 179 LGDILA 184 (202)
Q Consensus 179 l~~l~~ 184 (202)
++-+.+
T Consensus 262 lETl~E 267 (311)
T PRK12435 262 LEVLYD 267 (311)
T ss_pred HHHHHH
Confidence 554443
No 167
>PF11181 YflT: Heat induced stress protein YflT
Probab=23.07 E-value=1.5e+02 Score=20.47 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCceEEeec
Q 028869 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (202)
Q Consensus 63 Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK 93 (202)
|.++.-+-.++.++..+|. ..++++|.+|
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy--~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGY--SEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcCC--CcccEEEEEc
Confidence 4467777788888888898 8899999998
No 168
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.05 E-value=4.6e+02 Score=22.10 Aligned_cols=79 Identities=18% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHc
Q 028869 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (202)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 163 (202)
.++.+.+..|.....+ ...+.+.+++..+.+|. ++.+ ..|... +.....+.++.++.+
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~-----------------d~~~q~~~i~~li~~ 79 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELGV---DVTY-DGPTEP-----------------SVSGQVQLINNFVNQ 79 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhCC---EEEE-ECCCCC-----------------CHHHHHHHHHHHHHc
Confidence 4566777778643322 35678889999999984 4443 334221 145667889999987
Q ss_pred CCccEEEeCCCCHHHHHHHHHh
Q 028869 164 GYTKAIGVSNFSCKKLGDILAT 185 (202)
Q Consensus 164 G~ir~iGvSn~~~~~l~~l~~~ 185 (202)
| +..|-++..++..+...++.
T Consensus 80 ~-vdgIiv~~~d~~al~~~l~~ 100 (336)
T PRK15408 80 G-YNAIIVSAVSPDGLCPALKR 100 (336)
T ss_pred C-CCEEEEecCCHHHHHHHHHH
Confidence 5 88999988886655554443
No 169
>PF15636 Tox-GHH: GHH signature containing HNH/Endo VII superfamily nuclease toxin
Probab=22.82 E-value=2.4e+02 Score=18.75 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCC
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKI 188 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~ 188 (202)
...+|..=.++++.|.. |--+|+..+..+|++.+.+
T Consensus 16 v~~aW~~Er~~v~~g~~---gtr~Wt~~Ek~ell~~G~v 51 (79)
T PF15636_consen 16 VRRAWEQERQLVRSGEE---GTRNWTEEEKQELLSTGKV 51 (79)
T ss_pred HHHHHHHHHHHHHcCCC---CcCccCHHHHHHHHHcCCC
Confidence 56789988999999985 9999999999999998764
No 170
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=22.77 E-value=2.9e+02 Score=19.71 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=43.7
Q ss_pred CCceEEeeccCCCCCChhhHHHHHHHHHHHcCC----C--ceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHH
Q 028869 85 RDELFIASKLWCSDAHRELVVPALQKSLENLQL----E--YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAME 158 (202)
Q Consensus 85 R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~----~--~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (202)
|=.+.|+-|+......+..+++.+.++...... . -.|++++-.+.... .++.+.-+.|+
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~---------------~~~~~l~~~l~ 111 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEE---------------INFSHLNYELS 111 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCccc---------------CCHHHHHHHHH
Confidence 556788888776667778899999999877643 2 57999998875432 24666666666
Q ss_pred HHH
Q 028869 159 ECQ 161 (202)
Q Consensus 159 ~l~ 161 (202)
.|.
T Consensus 112 ~l~ 114 (118)
T PRK01492 112 KII 114 (118)
T ss_pred HHH
Confidence 654
No 171
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.75 E-value=1.7e+02 Score=20.64 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 028869 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (202)
Q Consensus 105 ~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (202)
+..+.+.|+.+....+|.+++..+++... +..+....++.|.+.| |+-+-
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R---------------~~~~~~~~~~~l~~~g-i~l~~ 100 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSR---------------NLVDLLELLELLEAHG-VRVVT 100 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhC---------------CHHHHHHHHHHHHHCC-CEEEE
Confidence 45666666666656788999888876533 3456777777777765 44333
No 172
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=22.72 E-value=2.2e+02 Score=23.74 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCeeeeeec
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVSF 197 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~~~Q~e~ 197 (202)
++.+.+-++.+.+.|+.-=||.+.|+.++++++-+.++.-|++.--++
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~Nf 126 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNF 126 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 477899999999999888899999999999999888765555544333
No 173
>PF14177 YkyB: YkyB-like protein
Probab=22.71 E-value=78 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCccEEEeC
Q 028869 155 EAMEECQNLGYTKAIGVS 172 (202)
Q Consensus 155 ~~l~~l~~~G~ir~iGvS 172 (202)
++|.+|.++|+.+-||+-
T Consensus 31 ~aL~Kll~E~kA~kiGlH 48 (140)
T PF14177_consen 31 KALQKLLEEGKAKKIGLH 48 (140)
T ss_pred HHHHHHHHcCcceEEEEe
Confidence 789999999999999985
No 174
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=22.71 E-value=4.9e+02 Score=22.27 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=75.3
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCCh---------HHHHHHHHHHHhC-CCCCCCCce-----EEeeccCC-----
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTE---------QPLGDAIAEALST-GIIKSRDEL-----FIASKLWC----- 96 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e---------~~~g~~l~~~~~~-~~~~~R~~~-----~I~tK~~~----- 96 (202)
..++...++-+..+++|.+.+-|...+.+. +..-+..+.+++- .. .|+.+ +|..-+++
T Consensus 50 s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~--Are~~~~~~~~v~gsiGp~~A~l 127 (317)
T KOG1579|consen 50 SNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADL--ARERLGEETGYVAGSIGPYGATL 127 (317)
T ss_pred cChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHH--HHHHhccccceeeeeccccccee
Confidence 457888899999999999999997655421 1111111111100 00 22222 23222211
Q ss_pred -----------CCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCC-------CCCCCC----------ccCCCCCC
Q 028869 97 -----------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPG-------SYEFPI----------KKEDFLPM 148 (202)
Q Consensus 97 -----------~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~-------~~~~~~----------~~~~~~~~ 148 (202)
...+.+.+.+..+..|+.+.-.-+|++.+.....-..+ .+..|. +.....+
T Consensus 128 ~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~- 206 (317)
T KOG1579|consen 128 ADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRS- 206 (317)
T ss_pred cCCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccC-
Confidence 23455778888888888887667999988753211100 000000 1111111
Q ss_pred CHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHH
Q 028869 149 DFKSVWEAMEECQNLGY-TKAIGVSNFSCKKLGDILA 184 (202)
Q Consensus 149 ~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~l~~ 184 (202)
.++.+....+.++|. +-.|||-.+.+..+..++.
T Consensus 207 --G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~ 241 (317)
T KOG1579|consen 207 --GETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLK 241 (317)
T ss_pred --CCcHHHHHHHhccCCceEEEEeccCCchhccHHHH
Confidence 123334444666664 8899998877766554443
No 175
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=4.4e+02 Score=21.75 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=58.3
Q ss_pred cceeeCCcCCC-----CChhHHHHHHHHHHHcCCcEEeCCC-CCC--ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC
Q 028869 26 VLGLGTAASPF-----SGSETTKLAILEAMKLGYRHFDTAT-LYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS 97 (202)
Q Consensus 26 ~lglG~~~~~~-----~~~~~~~~~l~~A~~~Gi~~~Dta~-~Yg--~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~ 97 (202)
.||.+.|.+.. .+.+...+-.-..+....|.++.-. .|. +++.+-++.++ ..+++..+.|+...
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~~ 75 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPRA 75 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEeccc
Confidence 46777776543 2333333333445556677765544 455 78888888774 58889999998532
Q ss_pred ----CCCh---hhHHHHHHHHHHHcCCCceeEeeeccCC
Q 028869 98 ----DAHR---ELVVPALQKSLENLQLEYIDLYVIHWPV 129 (202)
Q Consensus 98 ----~~~~---~~i~~~~~~sL~~Lg~~~vDl~~lh~p~ 129 (202)
.... ..+.+.....+..|| +.+..+++.-|-
T Consensus 76 iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Pp 113 (263)
T COG1801 76 ITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPP 113 (263)
T ss_pred ccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCC
Confidence 1111 234444555556777 589999999874
No 176
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.61 E-value=2.9e+02 Score=21.20 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCC
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIP 189 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~ 189 (202)
+.++-+.|.+|++.|.--++--.+..++-..++++..++.
T Consensus 47 ypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 47 YPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp -TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 4567889999999998755555566788888999887766
No 177
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.52 E-value=1.5e+02 Score=20.52 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHcCCccEEEeCC
Q 028869 149 DFKSVWEAMEECQNLGYTKAIGVSN 173 (202)
Q Consensus 149 ~~~~~~~~l~~l~~~G~ir~iGvSn 173 (202)
+...+++.|+.|.+.|.|+.+-..+
T Consensus 34 ~~~TVYR~L~~L~~~Gli~~~~~~~ 58 (116)
T cd07153 34 SLATVYRTLELLEEAGLVREIELGD 58 (116)
T ss_pred CHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3678999999999999999986654
No 178
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=73 Score=26.22 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHcCC
Q 028869 37 SGSETTKLAILEAMKLGY 54 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi 54 (202)
.+.+++.+++..|+++||
T Consensus 183 lt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred cCHHHHHHHHHHHHHhhh
Confidence 789999999999999998
No 179
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.29 E-value=5.1e+02 Score=22.36 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=26.9
Q ss_pred eeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHH
Q 028869 29 LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAE 75 (202)
Q Consensus 29 lG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~ 75 (202)
||+---+..+++...++++.+.+.|.+.|-.++..| +-..+.+.++.
T Consensus 186 fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~ 234 (347)
T PLN02746 186 VGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEA 234 (347)
T ss_pred ecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHH
Confidence 444322335677777777777777777764444445 33444444444
No 180
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=22.17 E-value=74 Score=22.16 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHh
Q 028869 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT 185 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~ 185 (202)
..+.++.+-+|+++|+++-.=-..|+.+++.++++.
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~ 115 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHER 115 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHH
Confidence 356799999999999999776667888888887774
No 181
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=22.16 E-value=1.3e+02 Score=25.23 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCc
Q 028869 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT 166 (202)
Q Consensus 102 ~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 166 (202)
+...+.+++.+++||++ .|.+... .. ......+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~t----t~--------------~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRT----TS--------------PRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeC----CC--------------HHHHHHHHHHHHHHHHCCCE
Confidence 56778889999999986 5753221 11 01145678899999999998
No 182
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=22.08 E-value=5.2e+02 Score=22.37 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHHHcCCcEE---eCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeecc-CCCC-CChhhHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHF---DTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL-WCSD-AHRELVVPALQKS 111 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~---Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-~~~~-~~~~~i~~~~~~s 111 (202)
.+..++..+++...+.|.+.+ -....||.. ..+.+++.+ .+..+.|.... .+.. .+...........
T Consensus 155 ~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG~~--~~~~f~~~~------~~~GicIa~~e~~~~~~~~~~~~~~~~~~~ 226 (403)
T cd06361 155 SDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRS--ALETFIIQA------EANGVCIAFKEILPASLSDNTKLNRIIRTT 226 (403)
T ss_pred chHhHHHHHHHHHHHcCCcEEEEEEecCchHHH--HHHHHHHHH------HHCCeEEEEEEEecCccCcchhHHHHHHHH
Confidence 455667777777777787754 333556621 122222221 23345555432 1221 1111112223333
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCC
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVSNFS 175 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~ 175 (202)
++.+.....|++++... ..++..-+.++++.|. ...||-..|.
T Consensus 227 ~~~ik~~~a~vVvv~~~---------------------~~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 227 EKIIEENKVNVIVVFAR---------------------QFHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHhcCCCeEEEEEeC---------------------hHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 34444456899888764 2355666777777776 2245666665
No 183
>PRK07094 biotin synthase; Provisional
Probab=22.07 E-value=4.7e+02 Score=21.79 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=68.1
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCC----CCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTA----TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta----~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 112 (202)
.+.++..+.++.+.+.|++.|-.. +.| ....+-+.++... .+.++.+..- ....+.+. -..|
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~~~~l~~l~~~i~------~~~~l~i~~~--~g~~~~e~-----l~~L 135 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYY-TDEKIADIIKEIK------KELDVAITLS--LGERSYEE-----YKAW 135 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-CHHHHHHHHHHHH------ccCCceEEEe--cCCCCHHH-----HHHH
Confidence 477888888899999999877433 222 3334445555431 1123433321 11222222 2345
Q ss_pred HHcCCCceeEeeeccCCCCCCCCCCCCCccCCC-CCCCHHHHHHHHHHHHHcCCcc----EEEeCCCCHHHHHHHHHhC
Q 028869 113 ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDF-LPMDFKSVWEAMEECQNLGYTK----AIGVSNFSCKKLGDILATA 186 (202)
Q Consensus 113 ~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~G~ir----~iGvSn~~~~~l~~l~~~~ 186 (202)
+..|++.+.+ ..+...+ .-.+.+ .....++.+++++.+++.|.-- -+|+...+.+++.+.++..
T Consensus 136 k~aG~~~v~~----glEs~~~------~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l 204 (323)
T PRK07094 136 KEAGADRYLL----RHETADK------ELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFL 204 (323)
T ss_pred HHcCCCEEEe----ccccCCH------HHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHH
Confidence 5667655442 2222111 000000 0234788999999999999632 2566677888887766654
No 184
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.02 E-value=5.5e+02 Score=22.62 Aligned_cols=116 Identities=8% Similarity=0.092 Sum_probs=60.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCC-ceeEeeeccCCCCCCCCCCC
Q 028869 60 ATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE-YIDLYVIHWPVSSKPGSYEF 138 (202)
Q Consensus 60 a~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~-~vDl~~lh~p~~~~~~~~~~ 138 (202)
...||.++.+-++|+...+.. +.+-++|.|-+-+ ..--+++..-+++.-++.... .+.++.++.|..... .
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~-~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs---~- 135 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMA-EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS---H- 135 (435)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchH-hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccC---H-
Confidence 345788888888888765443 4455666665432 222244444444433333111 367888887754311 0
Q ss_pred CCccCCCCCCCHHHHHHHHHH-HHH-------cCCccEEE-eCC-CC-HHHHHHHHHhCCCCCe
Q 028869 139 PIKKEDFLPMDFKSVWEAMEE-CQN-------LGYTKAIG-VSN-FS-CKKLGDILATAKIPPA 191 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~-l~~-------~G~ir~iG-vSn-~~-~~~l~~l~~~~~~~p~ 191 (202)
......++++|-+ +.+ .+.|-=|| ..+ .+ .+.+.++++..++.+.
T Consensus 136 --------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 136 --------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred --------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 0113344444432 222 22344454 222 22 6789999998877654
No 185
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.94 E-value=5.1e+02 Score=22.17 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=66.4
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHH-----------------HHHHHHHhCCCCCCCCceEEeeccCCCCC
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLG-----------------DAIAEALSTGIIKSRDELFIASKLWCSDA 99 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g-----------------~~l~~~~~~~~~~~R~~~~I~tK~~~~~~ 99 (202)
.+.+.-.++.+.+-+.|+.++-|...-.+-..+- ..|+.. +. ....++++|=. .
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~v---a~--~gkPvilstG~----~ 144 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYV---AK--TGKPIIMSTGI----A 144 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHH---Hh--cCCcEEEECCC----C
Confidence 4566677888888899999986654321111110 011211 11 23345555443 3
Q ss_pred ChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 028869 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (202)
Q Consensus 100 ~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 179 (202)
+.+.+..+++...+ -| .-++.++|+...+ |.+ .+ ..+ +.+|..|++.=. .-||+|.|+....
T Consensus 145 t~~Ei~~Av~~i~~-~g--~~~i~LlhC~s~Y-P~~------~~---~~n----L~~i~~lk~~f~-~pVG~SDHt~G~~ 206 (327)
T TIGR03586 145 TLEEIQEAVEACRE-AG--CKDLVLLKCTSSY-PAP------LE---DAN----LRTIPDLAERFN-VPVGLSDHTLGIL 206 (327)
T ss_pred CHHHHHHHHHHHHH-CC--CCcEEEEecCCCC-CCC------cc---cCC----HHHHHHHHHHhC-CCEEeeCCCCchH
Confidence 55788888887653 23 2478999986433 311 11 112 344445554332 3599999997654
Q ss_pred HHHHHh
Q 028869 180 GDILAT 185 (202)
Q Consensus 180 ~~l~~~ 185 (202)
..+...
T Consensus 207 ~~~aAv 212 (327)
T TIGR03586 207 APVAAV 212 (327)
T ss_pred HHHHHH
Confidence 444443
No 186
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=21.93 E-value=86 Score=26.78 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCccEE
Q 028869 150 FKSVWEAMEECQNLGYTKAI 169 (202)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~i 169 (202)
+...++.|..++++|||++.
T Consensus 291 ~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 291 YPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred hHHHHHHHHHHHhcCceEEe
Confidence 56778999999999999986
No 187
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=21.77 E-value=1e+02 Score=27.97 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=32.9
Q ss_pred Cccccc-eeeCCcCCC-CChhHHHHHHHHHHHcCCcEE---eCCCC
Q 028869 22 RRMPVL-GLGTAASPF-SGSETTKLAILEAMKLGYRHF---DTATL 62 (202)
Q Consensus 22 ~~v~~l-glG~~~~~~-~~~~~~~~~l~~A~~~Gi~~~---Dta~~ 62 (202)
.+.|.| ..|+++..- .+++++.++++.|...|||.+ ||-..
T Consensus 230 ~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~PgH 275 (542)
T KOG2499|consen 230 PTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDTPGH 275 (542)
T ss_pred CCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeecccCCcc
Confidence 578888 888887433 789999999999999999975 66543
No 188
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.73 E-value=6.1e+02 Score=23.05 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCcc
Q 028869 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK 142 (202)
Q Consensus 63 Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~ 142 (202)
+|+++.+-++|+...+.. +.+-++|.+-+-. +-|-..++...+.++.+ +.++.++.|.....
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~s-----eiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~--------- 128 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCTA-----ELLQEDLGGLAKHAGLP-IPVLPLELNAYRVK--------- 128 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcHH-----HHhccCHHHHHHHhCCC-CCEEEEecCCcccc---------
Confidence 457777777777764432 3344566655422 22223333333444443 56888888864321
Q ss_pred CCCCCCCHHHHHHHHHH-HH-----------HcCCccEEEeCC------CCHHHHHHHHHhCCCCC
Q 028869 143 EDFLPMDFKSVWEAMEE-CQ-----------NLGYTKAIGVSN------FSCKKLGDILATAKIPP 190 (202)
Q Consensus 143 ~~~~~~~~~~~~~~l~~-l~-----------~~G~ir~iGvSn------~~~~~l~~l~~~~~~~p 190 (202)
. ......+++++-+ +. +.+.|-=||.++ .+...+.++++..++.+
T Consensus 129 -~--~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 129 -E--NWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred -c--chHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 0 0012223333222 11 234577788765 24577888888776544
No 189
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=21.52 E-value=3.8e+02 Score=20.57 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=26.6
Q ss_pred cccceeeCCcCCCCChhHHHHHHHHHHHcCCcEEeCCCCCC
Q 028869 24 MPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ 64 (202)
Q Consensus 24 v~~lglG~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 64 (202)
=|.+..|+-. .+++....+++.+-+..+..+-||+.++
T Consensus 37 rPLlivGp~~---~dee~~E~~vKi~ekfnipivaTa~~~~ 74 (170)
T COG1880 37 RPLLIVGPLA---LDEELLELAVKIIEKFNIPIVATASSMG 74 (170)
T ss_pred CceEEecccc---cCHHHHHHHHHHHHhcCCceEecchhhc
Confidence 3566667665 4555555555666666799999999997
No 190
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.49 E-value=4.8e+02 Score=21.70 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHHH
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEA 76 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~~ 76 (202)
.+.+...++++.+.+.|+..|-.++..| +-..+.+.++..
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHH
Confidence 5777788888888888887775555555 444455555443
No 191
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=21.48 E-value=3.8e+02 Score=25.51 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=47.5
Q ss_pred HcCCcEEeC--CCCCCChHHHHHHHHHHHhCCCCCCCCceEEeecc-CCCCCChhhHHHHHHHHHHHcCCCceeEeeecc
Q 028869 51 KLGYRHFDT--ATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL-WCSDAHRELVVPALQKSLENLQLEYIDLYVIHW 127 (202)
Q Consensus 51 ~~Gi~~~Dt--a~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-~~~~~~~~~i~~~~~~sL~~Lg~~~vDl~~lh~ 127 (202)
+.|+...|. .+.||+++.+-+.++.+ ....+.|..-+ .+.+.+... +..+... .-+|-|+|.+-.
T Consensus 112 D~gyDi~d~~Idp~~GT~eDf~~L~~~A-------h~~G~~vi~DlVpnHTs~ghd----F~lAr~~-~~~Y~g~Y~mve 179 (688)
T TIGR02455 112 DGNFDRISFDIDPLLGSEEELIQLSRMA-------AAHNAITIDDIIPAHTGKGAD----FRLAELA-HGDYPGLYHMVE 179 (688)
T ss_pred CCCCCcccCccCcccCCHHHHHHHHHHH-------HHCCCEEEEEeCCCCCCCCcc----hHHHhhc-CCCCCCceeecc
Confidence 345444444 55677777777777766 23334444333 222221111 3333334 448999983322
Q ss_pred CCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028869 128 PVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK 167 (202)
Q Consensus 128 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir 167 (202)
...++. ..+|.....++..++.. .+-+.|+++|.|-
T Consensus 180 i~~~~W--~vwpd~~~~~~~~~l~~--~~~~~L~~~g~i~ 215 (688)
T TIGR02455 180 IREEDW--ALLPEVPAGRDAVNLLP--AQCDELKAKHYIV 215 (688)
T ss_pred cccccc--ccCCCCCcccccccccH--HHHHHHhhccCcc
Confidence 111111 01122222233333332 5667888888874
No 192
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=21.43 E-value=5.2e+02 Score=22.13 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCCChHHHHHHHHHHHhC-CCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHc
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALST-GIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~~g~~l~~~~~~-~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 115 (202)
.+.++...+++.+.+.|++=+=-+ |-|..+-+-|...++. ... .-.++-++|.. ...+....-|+.-
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GGEPllR~dl~eIi~~l~~~-~~~~islTTNG--------~~L~~~a~~Lk~A 110 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GGEPLLRKDLDEIIARLARL-GIRDLSLTTNG--------VLLARRAADLKEA 110 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CCCchhhcCHHHHHHHHhhc-ccceEEEecch--------hhHHHHHHHHHHc
Confidence 478999999999999999987554 3344443333222110 100 13556666653 3455666777888
Q ss_pred CCCceeEeeeccCCCCCCCCCCCCCccCCCC-CCCHHHHHHHHHHHHHcCCc----cEEEeCCCCHHHHHHHHHhCCCCC
Q 028869 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFL-PMDFKSVWEAMEECQNLGYT----KAIGVSNFSCKKLGDILATAKIPP 190 (202)
Q Consensus 116 g~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~l~~l~~~~~~~p 190 (202)
|++.|.+ -+|..++.. ...+. .-.+..+++.+++..+.|.. -.+=+-+.+-.++..+++.++-..
T Consensus 111 Gl~rVNV-SLDsld~e~---------f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~ 180 (322)
T COG2896 111 GLDRVNV-SLDSLDPEK---------FRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERG 180 (322)
T ss_pred CCcEEEe-ecccCCHHH---------HHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcC
Confidence 8877766 334433221 01110 11278899999999999874 477888899999999999887544
Q ss_pred e
Q 028869 191 A 191 (202)
Q Consensus 191 ~ 191 (202)
.
T Consensus 181 ~ 181 (322)
T COG2896 181 A 181 (322)
T ss_pred C
Confidence 3
No 193
>PRK10508 hypothetical protein; Provisional
Probab=21.26 E-value=2.4e+02 Score=24.09 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.6
Q ss_pred CChhhHHHHHHHHHHHcCCCce
Q 028869 99 AHRELVVPALQKSLENLQLEYI 120 (202)
Q Consensus 99 ~~~~~i~~~~~~sL~~Lg~~~v 120 (202)
.+++.+.+.+++..+.+|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 5789999999999999998877
No 194
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=21.24 E-value=2.4e+02 Score=26.00 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHHhCCCCCe
Q 028869 148 MDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPA 191 (202)
Q Consensus 148 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~l~~~~~~~p~ 191 (202)
.+..++.+-+.+.++..+|+.||+=.+...++...++.++++++
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv 453 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVV 453 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCcee
Confidence 46788999999999999999999999999999999999887643
No 195
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.10 E-value=3.2e+02 Score=24.08 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=50.0
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCC----------------CCChh---hHHHHHHHHHHHcC
Q 028869 56 HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS----------------DAHRE---LVVPALQKSLENLQ 116 (202)
Q Consensus 56 ~~Dta~~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~----------------~~~~~---~i~~~~~~sL~~Lg 116 (202)
.+-|-..-|..+.-+++++.. . ++..++|+.=.|+. .++.+ --.+.+-..|+.+.
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~---~---~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~ 170 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARF---F---PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP 170 (396)
T ss_pred heecCCcchHHHHHHHHHHHh---C---CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCC
Confidence 334433334677777888776 3 66678898877752 11111 11233444445554
Q ss_pred CCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHH-cCCcc
Q 028869 117 LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN-LGYTK 167 (202)
Q Consensus 117 ~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~ir 167 (202)
.=|+++||..-.+..|-+ . -.+.|+.+.++.+ +|+|=
T Consensus 171 --~~~vvLLH~CcHNPTG~D-----------~-t~~qW~~l~~~~~~r~lip 208 (396)
T COG1448 171 --EGSVVLLHGCCHNPTGID-----------P-TEEQWQELADLIKERGLIP 208 (396)
T ss_pred --CCCEEEEecCCCCCCCCC-----------C-CHHHHHHHHHHHHHcCCee
Confidence 458899985422211111 1 4578888887764 55544
No 196
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.08 E-value=89 Score=31.22 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhCCCCCeeeeeec
Q 028869 175 SCKKLGDILATAKIPPAANQVSF 197 (202)
Q Consensus 175 ~~~~l~~l~~~~~~~p~~~Q~e~ 197 (202)
+...++++.+..++.|+..|++-
T Consensus 505 ~~~~v~~~r~~~~~~p~~k~vd~ 527 (1068)
T PRK12815 505 TEEEVRALRKKLGIRPSYKMVDT 527 (1068)
T ss_pred CHHHHHHHHHHCCCeeEEEEecC
Confidence 45567777777788999998763
No 197
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.03 E-value=1.8e+02 Score=23.65 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHcCCcEEeCC-CCCC-ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcC
Q 028869 40 ETTKLAILEAMKLGYRHFDTA-TLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ 116 (202)
Q Consensus 40 ~~~~~~l~~A~~~Gi~~~Dta-~~Yg-~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 116 (202)
+.+.+.++.|-+.|+...=+. ..|. +...+-+..+...+.|. +.+.|.-- .....|+.+.+-++...++++
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~----d~i~l~DT--~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGA----DCVYVTDS--AGAMLPDDVRERVRALREALD 184 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCC----CEEEEcCC--CCCcCHHHHHHHHHHHHHhCC
Confidence 455666677777676432111 1122 44444444444433332 23333222 223455666666666666665
No 198
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.88 E-value=2.2e+02 Score=20.14 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHcCCcEEeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCceEEeecc-CCC----------------
Q 028869 37 SGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKL-WCS---------------- 97 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~-~~~---------------- 97 (202)
.|.......---.++.|.-|+-|-..|. .|.++---|- . ..+++++.+|+ |..
T Consensus 17 KD~a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~ll-----d---~pekl~vagkVaWitP~gt~sr~~GiGv~f~ 88 (117)
T COG3215 17 KDMALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELL-----D---FPEKLPVAGKVAWITPVGTQSRPAGIGVQFT 88 (117)
T ss_pred hhHHHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhc-----C---chhhccccceEEEEccCCCCCCCCceeeecc
Confidence 4444455555566799999999999996 5555433332 1 45688999997 321
Q ss_pred -CCChhhHHHHHHHHHHH
Q 028869 98 -DAHRELVVPALQKSLEN 114 (202)
Q Consensus 98 -~~~~~~i~~~~~~sL~~ 114 (202)
.-.-..++.++|..|..
T Consensus 89 d~e~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 89 DGENGLKVRNQIETLLGG 106 (117)
T ss_pred CCCchhhHHHHHHHHHHh
Confidence 11124688888888743
No 199
>PRK10200 putative racemase; Provisional
Probab=20.76 E-value=4.4e+02 Score=21.03 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHH-H
Q 028869 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK-L 179 (202)
Q Consensus 101 ~~~i~~~~~~sL~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~-l 179 (202)
.+..++-++..-.+.+.++.+.+.++.++..+.-... ..+++ +.......+.++.|.+.| ++.|-++.-++.. +
T Consensus 16 ~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~---~~~~~-~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~ 90 (230)
T PRK10200 16 IPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQ---RRGEW-DKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVA 90 (230)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHH---HCCCc-chHHHHHHHHHHHHHHcC-CCEEEECCchHHHHH
Confidence 3555666666667788889999999988643220000 00111 112455677777787777 6888887777544 4
Q ss_pred HHHHHhCCCCCeee
Q 028869 180 GDILATAKIPPAAN 193 (202)
Q Consensus 180 ~~l~~~~~~~p~~~ 193 (202)
+++.+..++ |.++
T Consensus 91 ~~l~~~~~i-Pii~ 103 (230)
T PRK10200 91 DAIESRCSL-PFLH 103 (230)
T ss_pred HHHHHhCCC-CEee
Confidence 445544443 4444
No 200
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.76 E-value=5.4e+02 Score=22.00 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCcEEeCCCCCC------------ChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 028869 44 LAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (202)
Q Consensus 44 ~~l~~A~~~Gi~~~Dta~~Yg------------~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 111 (202)
+.++...+.|++.+..+-.-. +...+-++++.+.+.|. +.+.+..-+.-+..+.+.+.+.++..
T Consensus 100 e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~----~~v~~dli~GlPgqt~e~~~~~l~~~ 175 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGF----NNINVDLMFGLPNQTLEDWKETLEKV 175 (374)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CcEEEEeecCCCCCCHHHHHHHHHHH
Confidence 455666667887764333221 22223344444423232 12223332344566778888777766
Q ss_pred HHHcCCCceeEeeeccCCCCCCCCCCCCCccCCCCCCC---HHHHHH-HHHHHHHcCCccEEEeCCCCHH
Q 028869 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMD---FKSVWE-AMEECQNLGYTKAIGVSNFSCK 177 (202)
Q Consensus 112 L~~Lg~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~l~~l~~~G~ir~iGvSn~~~~ 177 (202)
+ .++.+++.++.+. |.+.++-.... ..+.+...+ ..+.++ +.+.|.+.|. .++++|||...
T Consensus 176 ~-~l~~~~is~y~l~-~~pgT~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~ye~~~fa~~ 240 (374)
T PRK05799 176 V-ELNPEHISCYSLI-IEEGTPFYNLY--ENGKLKLPDEEEEREMYHYTIEFLKEKGY-HQYEISNFAKP 240 (374)
T ss_pred H-hcCCCEEEEeccE-ecCCCHHHHHH--hcCCCCCCChHHHHHHHHHHHHHHHHcCC-cEEeeeeeECC
Confidence 5 5788888887765 22222200000 000000011 122333 3355777786 56899999853
No 201
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.51 E-value=5.9e+02 Score=22.38 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=60.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHcC-CCceeEeeeccCCCCCCCCCCCCC
Q 028869 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFPI 140 (202)
Q Consensus 62 ~Yg~e~~~g~~l~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg-~~~vDl~~lh~p~~~~~~~~~~~~ 140 (202)
.||.++-+-++|+...+.- +.+-++|.|-+.+. .--+++..-+++.-++.- ...+.++.+|.|+....
T Consensus 62 VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~e-iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~------- 130 (417)
T cd01966 62 ILGGGENLEEALDTLAERA---KPKVIGLLSTGLTE-TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGS------- 130 (417)
T ss_pred EECCHHHHHHHHHHHHHhc---CCCEEEEECCCccc-ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCc-------
Confidence 4778888888888765432 44556676665332 222445555544434421 01366888887764321
Q ss_pred ccCCCCCCCHHHHHHHHHH-H--------HHcCCccEEEeCCC---CHHHHHHHHHhCCCCCe
Q 028869 141 KKEDFLPMDFKSVWEAMEE-C--------QNLGYTKAIGVSNF---SCKKLGDILATAKIPPA 191 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~-l--------~~~G~ir~iGvSn~---~~~~l~~l~~~~~~~p~ 191 (202)
.......++++|.+ + ..+++|-=||-++. +.+.+.++++..++.+.
T Consensus 131 -----~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 131 -----LEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred -----HHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 01113344444432 2 12456777875554 34667777777776553
No 202
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.42 E-value=3.5e+02 Score=19.70 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCceEEeeccCCCCCC------hhhHHHHHHHHHHHcC--CCceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHH
Q 028869 85 RDELFIASKLWCSDAH------RELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEA 156 (202)
Q Consensus 85 R~~~~I~tK~~~~~~~------~~~i~~~~~~sL~~Lg--~~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
...+.++.+..+.... ...+.+..+...++|+ ...+.+.+... ..|++|..| .+-++
T Consensus 18 ~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~---~g~~~Wl~P------------~~~~~ 82 (135)
T cd00419 18 KDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSR---FGPGEWLEP------------STDDA 82 (135)
T ss_pred CCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCC---CCCCCCCCC------------CHHHH
Confidence 4556666665332111 4667777777778888 33344443322 223344433 24578
Q ss_pred HHHHHHcCC
Q 028869 157 MEECQNLGY 165 (202)
Q Consensus 157 l~~l~~~G~ 165 (202)
|++|.++|.
T Consensus 83 l~~l~~~G~ 91 (135)
T cd00419 83 LEELAKEGV 91 (135)
T ss_pred HHHHHHcCC
Confidence 888999884
No 203
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.38 E-value=1.4e+02 Score=25.46 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHcCC--CceeEeeeccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028869 103 LVVPALQKSLENLQL--EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK 167 (202)
Q Consensus 103 ~i~~~~~~sL~~Lg~--~~vDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir 167 (202)
...+.+.+.+++||+ ++-..+.-+.+ ...+.+++.+.+|.++|.|-
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~-------------------~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDP-------------------EYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCH-------------------HHHHHHHHHHHHHHHCCCEe
Confidence 445667788899997 32212211111 12567889999999999874
No 204
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.27 E-value=5.5e+02 Score=21.90 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCceEEeeccCCCC-----CChhhHHHHHHHHHHHcCCCceeE
Q 028869 85 RDELFIASKLWCSD-----AHRELVVPALQKSLENLQLEYIDL 122 (202)
Q Consensus 85 R~~~~I~tK~~~~~-----~~~~~i~~~~~~sL~~Lg~~~vDl 122 (202)
..++.|..|+...+ .+.+... .+-..|+..|+|++++
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~-~i~~~Le~~G~d~i~v 243 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVV-ALAKALEAAGADILNT 243 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHH-HHHHHHHHcCCCEEEe
Confidence 45677777775432 3333333 3444567889888887
No 205
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.06 E-value=5.1e+02 Score=21.45 Aligned_cols=26 Identities=4% Similarity=-0.106 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHHHHc-CCcEEeCCCC
Q 028869 37 SGSETTKLAILEAMKL-GYRHFDTATL 62 (202)
Q Consensus 37 ~~~~~~~~~l~~A~~~-Gi~~~Dta~~ 62 (202)
.+.++..++++..++. |++.++.+..
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~ 42 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASA 42 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 4566677777776544 9999999754
Done!