Query 028870
Match_columns 202
No_of_seqs 158 out of 236
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ciu_A TIM21P, import inner me 100.0 1.8E-41 6.1E-46 267.3 12.0 109 86-196 2-120 (127)
2 3e8v_A Possible transglutamina 64.7 28 0.00095 24.8 6.9 48 134-194 34-81 (82)
3 1mzw_B U4/U6 snRNP 60KDA prote 58.9 2.2 7.7E-05 25.2 0.2 17 110-126 7-23 (31)
4 2dk4_A PRE-mRNA-splicing facto 50.2 3.6 0.00012 29.2 0.2 27 103-129 27-56 (76)
5 1r4g_A RNA polymerase alpha su 41.3 12 0.0004 24.5 1.5 22 91-112 20-41 (53)
6 3qby_A Hepatoma-derived growth 37.2 13 0.00044 26.6 1.4 30 79-108 62-91 (94)
7 2d7n_A Filamin-C; beta-sandwic 33.5 53 0.0018 23.2 4.2 30 148-179 24-53 (93)
8 2c9a_A Receptor-type tyrosine- 33.1 2.1E+02 0.0071 23.7 8.6 64 129-195 61-141 (259)
9 2oxg_Z SOXZ protein; immunoglo 29.4 1.6E+02 0.0056 21.3 6.6 29 147-177 74-102 (108)
10 3ibz_A Putative tellurium resi 29.3 48 0.0016 26.8 3.8 42 135-180 129-173 (191)
11 2wjn_H Reaction center protein 26.9 1.6E+02 0.0053 25.2 6.7 39 151-192 156-196 (258)
12 2w0p_A Filamin-A; alternative 25.8 1.1E+02 0.0036 21.1 4.7 29 148-180 36-64 (94)
13 2b7e_A PRE-mRNA processing pro 25.5 15 0.00053 24.6 0.1 30 82-111 9-41 (59)
14 2lon_A HIG1 domain family memb 31.1 15 0.00051 27.1 0.0 34 49-84 16-49 (99)
15 1v8h_A Sulfur oxidation protei 25.2 1.6E+02 0.0056 21.3 5.8 29 147-177 73-101 (107)
16 2k9u_A Gamma filamin; cytoskel 25.1 1E+02 0.0035 22.3 4.6 33 142-180 47-79 (119)
17 1uzc_A Hypothetical protein FL 24.1 20 0.00069 24.6 0.5 22 90-111 31-52 (71)
18 2bp3_A Filamin A; structural p 24.0 1.8E+02 0.0061 19.9 5.7 30 147-180 38-67 (97)
19 3mx7_A FAS apoptotic inhibitor 22.8 2.2E+02 0.0074 20.5 6.2 52 118-185 22-83 (90)
20 2qng_A Uncharacterized protein 22.2 73 0.0025 25.9 3.6 41 135-179 137-178 (199)
21 2d7m_A Filamin-C; beta-sandwic 22.0 89 0.0031 22.3 3.8 34 142-179 42-75 (115)
22 1ri0_A Hepatoma-derived growth 21.9 47 0.0016 24.3 2.2 27 83-109 80-106 (110)
23 3cnk_A Filamin-A; FLNA24, X-RA 20.9 1.1E+02 0.0037 20.7 3.8 34 142-179 28-61 (89)
24 3tre_A EF-P, elongation factor 20.4 2.6E+02 0.0089 22.4 6.6 34 140-173 20-54 (191)
25 1rzh_H Reaction center protein 20.4 1.9E+02 0.0066 24.6 5.9 38 151-192 152-191 (260)
26 3rgh_A Filamin-A; cell adhesio 20.2 1.5E+02 0.005 20.7 4.5 35 141-179 36-70 (100)
No 1
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=267.30 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=101.5
Q ss_pred ccCCcchHHHHHHHHHHhcchhhHhhh----C----CCceecccc-Ccccccccc-ccceEEECCCCceEEEEEEEEEcC
Q 028870 86 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGP 155 (202)
Q Consensus 86 f~~~s~~~iy~~Al~~ik~d~~V~~~L----G----~PI~ayG~~-s~~r~~R~r-I~~~~~~d~~G~eh~~m~F~V~Gp 155 (202)
|+++|++.+||+||++|++||+|+++| | +||+|||++ +++||+||| |+|++++|++|++||+|+|||+||
T Consensus 2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~ 81 (127)
T 2ciu_A 2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK 81 (127)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence 467789999999999999999999999 6 899999999 889999999 999999999999999999999999
Q ss_pred CCceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEEecCC
Q 028870 156 HGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY 196 (202)
Q Consensus 156 ~g~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Iile~~ 196 (202)
+++|+||+||+|+++.++|+|+||+|||+|++ +||||+.
T Consensus 82 ~~~G~V~le~~k~~~~~~~ef~Yl~vDV~g~~--Ri~Le~p 120 (127)
T 2ciu_A 82 KKIALVHLEAKESKQNYQPDFINMYVDVPGEK--RYYLIKP 120 (127)
T ss_dssp SCEEEEEEEEECCSSCSSCEEEEEEEECTTSC--CEEEECC
T ss_pred CCcEEEEEEEEecCCCCceEEEEEEEEeCCCc--eEEEECC
Confidence 99999999999988899999999999999976 7888884
No 2
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=64.69 E-value=28 Score=24.82 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=34.9
Q ss_pred ceEEECCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEEec
Q 028870 134 NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194 (202)
Q Consensus 134 ~~~~~d~~G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Iile 194 (202)
.+.++|.+|.-.+.+ |.|.+++-+.| +|.|-|.-| +....++-.|+|+
T Consensus 34 ~~~~TD~~G~~s~~~--------G~Gd~~v~A~k---~G~~g~a~l--~~~~~~~~~i~L~ 81 (82)
T 3e8v_A 34 ATKHTDRSGHASLTA--------GKGDMLVWASK---DGRFGYSKL--SFGKDNELKITLD 81 (82)
T ss_dssp EEEECCTTSEEEEEC--------CSEEEEEEEEE---TTEEEEEEE--EETTBCEEEEECC
T ss_pred EEEEECCCceEEEEE--------cCCceEEEecc---CCEEEEEEe--ccCCCceEEEEeC
Confidence 456778889866665 99999999988 588888654 4444455666664
No 3
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=58.94 E-value=2.2 Score=25.21 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=13.5
Q ss_pred hhhCCCceeccccCccc
Q 028870 110 VRIGSPITGYGQESRNR 126 (202)
Q Consensus 110 ~~LG~PI~ayG~~s~~r 126 (202)
..||+||+=|||....|
T Consensus 7 R~lgePi~lFGE~~~~R 23 (31)
T 1mzw_B 7 RALGEPITLFGEGPAER 23 (31)
T ss_dssp HHTTCCSEETTCCHHHH
T ss_pred HHcCCCeeecCCChHHH
Confidence 45899999999987543
No 4
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=50.17 E-value=3.6 Score=29.17 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=18.7
Q ss_pred hcchhhHhh---hCCCceeccccCcccccc
Q 028870 103 QDDGQVRVR---IGSPITGYGQESRNRAAR 129 (202)
Q Consensus 103 k~d~~V~~~---LG~PI~ayG~~s~~r~~R 129 (202)
-.|.+|+.. ||+||+=|||....|..|
T Consensus 27 ~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~R 56 (76)
T 2dk4_A 27 LSRQEVIRRLRERGEPIRLFGETDYDAFQR 56 (76)
T ss_dssp SCHHHHHHHHHHHTCCSSCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCeeecCCChHHHHHH
Confidence 345666655 699999999987554333
No 5
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=41.34 E-value=12 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHhcchhhHhhh
Q 028870 91 EYKIFNKALKRIQDDGQVRVRI 112 (202)
Q Consensus 91 ~~~iy~~Al~~ik~d~~V~~~L 112 (202)
.-+.|=+.+.+|+.|++|.+++
T Consensus 20 ~K~sYi~~L~~CktdqEV~~~M 41 (53)
T 1r4g_A 20 EKAAYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp HHHHHHHHHHTCCSSHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHH
Confidence 5688999999999999998875
No 6
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=37.16 E-value=13 Score=26.63 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=23.7
Q ss_pred hhhhhhhccCCcchHHHHHHHHHHhcchhh
Q 028870 79 YAVFKELIFEPKEYKIFNKALKRIQDDGQV 108 (202)
Q Consensus 79 Y~l~~ELf~~~s~~~iy~~Al~~ik~d~~V 108 (202)
|.-..|-|..++....|++||+-|++||.|
T Consensus 62 f~~~~~~~~k~~k~k~F~~Al~Eien~p~~ 91 (94)
T 3qby_A 62 YDKCKDKYGKPNKRKGFNEGLWEIQNNPHA 91 (94)
T ss_dssp HHHHHHHHCSCCSSTTHHHHHHHHHHCTTS
T ss_pred HHHHHHHHccCccHHHHHHHHHHHhhCCCC
Confidence 333456667777789999999999999976
No 7
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=33.55 E-value=53 Score=23.24 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.4
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 028870 148 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 179 (202)
Q Consensus 148 m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL 179 (202)
|+..|.+|.|+ .+..++..+ .+|.|+..|.
T Consensus 24 l~v~V~~PsG~-~~~~~v~d~-~dGtY~v~yt 53 (93)
T 2d7n_A 24 LTGEVRMPSGK-TARPNITDN-KDGTITVRYA 53 (93)
T ss_dssp EEEEEECTTSC-EECCEEEEC-SSSCEEEEEC
T ss_pred EEEEEECCCCC-ccceEEEEC-CCCEEEEEEE
Confidence 45679999987 577787765 6888887653
No 8
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein, hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL; 2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Probab=33.08 E-value=2.1e+02 Score=23.69 Aligned_cols=64 Identities=13% Similarity=0.268 Sum_probs=39.4
Q ss_pred cccccceEEECCCCceEEEEEEEEEcC--CCceEEEEEEEEcCC-------------CCceEEEEEEEEECC--CCeeEE
Q 028870 129 RQRIPNRVYTDEFGIEHVEVNFYIRGP--HGAGKVFTEMFKDKE-------------DKQWKFTYLIVEITS--PYKAQL 191 (202)
Q Consensus 129 R~rI~~~~~~d~~G~eh~~m~F~V~Gp--~g~G~V~le~~k~~~-------------~g~wey~yL~VdV~g--~~r~~I 191 (202)
+.|+.+-.+ ...+...+++.+|+.|. .+.|.+.|.+..+.. ...|... .|++.. ....+|
T Consensus 61 ~A~L~Sp~~-~~~~~~Cl~F~YhM~G~~g~~~G~L~V~v~~~~~~~~~~lW~~sG~qg~~W~~~--~v~l~~~~~~~fqv 137 (259)
T 2c9a_A 61 RAHLLLPQL-KENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA--ELAISTFWPNFYQV 137 (259)
T ss_dssp EEEEECCCB-CCSSCCEEEEEEEEECSSSSCSEEEEEEEEETTCCCCSCSEEECCCCCCCEEEE--EEEECCCTTSCEEE
T ss_pred eEEEEcccc-cCCCCcEEEEEEEeecCCCCCCcEEEEEEEeCCCccceEEEEEeCCCCCceEEE--EEEeecCCCCceEE
Confidence 344443333 23445568888899995 568888888876421 2346654 455554 567788
Q ss_pred EecC
Q 028870 192 MLES 195 (202)
Q Consensus 192 ile~ 195 (202)
++|.
T Consensus 138 vFeg 141 (259)
T 2c9a_A 138 IFEV 141 (259)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 9
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=29.38 E-value=1.6e+02 Score=21.35 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCceEEEEEEEEcCCCCceEEE
Q 028870 147 EVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 177 (202)
Q Consensus 147 ~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~ 177 (202)
.++|.+.|+ +.|.+.+.+..+ .++.|+..
T Consensus 74 ~~~F~~~~~-~~g~l~v~~~Dn-~G~~~~~~ 102 (108)
T 2oxg_Z 74 YFEFDAKVD-AAGEFKFTWYDD-DGSVYEDV 102 (108)
T ss_dssp EEEEEEEEC-SSEEEEEEEEET-TSCEEEEE
T ss_pred eEEEEEecC-CCcEEEEEEEEC-CCCEEEEE
Confidence 356788875 467999999887 57889875
No 10
>3ibz_A Putative tellurium resistant like protein TERD; structural genomics, stress protein, tellurium resistance; 1.78A {Streptomyces coelicolor A3}
Probab=29.35 E-value=48 Score=26.76 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=30.3
Q ss_pred eEEECC-CCceEEEEEEEEEc--CCCceEEEEEEEEcCCCCceEEEEEE
Q 028870 135 RVYTDE-FGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLI 180 (202)
Q Consensus 135 ~~~~d~-~G~eh~~m~F~V~G--p~g~G~V~le~~k~~~~g~wey~yL~ 180 (202)
+...|. +|.|- .+|.+.+ ..-+++|..|..+. +|+|+|+-+-
T Consensus 129 irv~d~~~g~el--ar~~l~~~~~~etA~v~~elYR~--~g~WkfrAvG 173 (191)
T 3ibz_A 129 IRVVNQAGEAEI--ARYDLSEDASTETAMVFGELYRH--GAEWKFRAIG 173 (191)
T ss_dssp EEEEETTTTEEE--EEEEHHHHSTTCSEEEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEECCCCcEE--EEEECCCCCCCcEEEEEEEEEEe--CCcEEEEEee
Confidence 344453 56654 4567764 56799999999997 7999998763
No 11
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=26.88 E-value=1.6e+02 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=27.6
Q ss_pred EEEcCCC-c-eEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEE
Q 028870 151 YIRGPHG-A-GKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 192 (202)
Q Consensus 151 ~V~Gp~g-~-G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Ii 192 (202)
.|.|..| + |+|.=-++. ..+|..|||.||.-+..++.+|
T Consensus 156 ~Vyg~DGe~iGsV~Dl~VD---~~eg~VRYLVVdtGgggrkVLL 196 (258)
T 2wjn_H 156 PVVAADGVEAGTVTDLWVD---RSEHYFRYLELSVAGSARTALI 196 (258)
T ss_dssp EEECTTSCEEEEEEEEEEE---TTTTEEEEEEEEETTTTEEEEE
T ss_pred EeEcCCCCeeEEEEEEEEE---CCCCEEEEEEEEcCCCCCEEEe
Confidence 4555544 4 888877777 4789999999999774444444
No 12
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=25.83 E-value=1.1e+02 Score=21.11 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEEEEE
Q 028870 148 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLI 180 (202)
Q Consensus 148 m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~ 180 (202)
+...|+||.+ +.++...+ .+|.|..+|..
T Consensus 36 ~~v~v~gp~~---~~~~v~d~-~dGty~v~Y~p 64 (94)
T 2w0p_A 36 LAIAVEGPSK---AEISFEDR-KDGSCGVAYVV 64 (94)
T ss_dssp EEEEEEESSC---CEEEEEEC-TTSCEEEEEEC
T ss_pred EEEEEECCCC---CeEEEEEC-CCCEEEEEEEE
Confidence 4456889987 45555444 67999887754
No 13
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.48 E-value=15 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=22.7
Q ss_pred hhhhccCCc--chHHHHHHHHHH-hcchhhHhh
Q 028870 82 FKELIFEPK--EYKIFNKALKRI-QDDGQVRVR 111 (202)
Q Consensus 82 ~~ELf~~~s--~~~iy~~Al~~i-k~d~~V~~~ 111 (202)
|.+|+-.++ ++.-|++|+..| .+||+-..+
T Consensus 9 F~~lL~~~~V~s~wsweqamr~i~i~DPrY~al 41 (59)
T 2b7e_A 9 FITMLKENQVDSTWSFSRIISELGTRDPRYWMV 41 (59)
T ss_dssp HHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHS
T ss_pred HHHHHHHcCCCCCCcHHHHHHHhccCCCccccc
Confidence 455555554 788999999999 899986543
No 14
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=31.09 E-value=15 Score=27.07 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCCCceeeeecceehhhhHHHHHHHHHhHhhhhhh
Q 028870 49 NIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKE 84 (202)
Q Consensus 49 ~~~eK~~~at~~~~~~~vIl~G~gltg~v~Y~l~~E 84 (202)
+..||..|-++.- -.++|+.+|++++++|.+++=
T Consensus 16 s~~~K~~rk~ke~--PlvpIg~l~~~~vl~~Gl~~~ 49 (99)
T 2lon_A 16 CVSEKLLRKTRES--PLVPIGLGGCLVVAAYRIYRL 49 (99)
Confidence 4458888877665 345666677888888888763
No 15
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=25.18 E-value=1.6e+02 Score=21.30 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=22.8
Q ss_pred EEEEEEEcCCCceEEEEEEEEcCCCCceEEE
Q 028870 147 EVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 177 (202)
Q Consensus 147 ~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~ 177 (202)
.++|.++|+ +.|.+.+.+..+ .++.|+..
T Consensus 73 ~~~F~~~~~-~~g~l~v~~~Dn-~G~~~~~~ 101 (107)
T 1v8h_A 73 LYAFKFKAE-KAGTFTIKLKDT-DGDTGEAS 101 (107)
T ss_dssp EEEEEEECC-SCEEEEEEEEET-TSCEEEEE
T ss_pred eEEEEEecC-CCceEEEEEEEC-CCCEEEEE
Confidence 467888886 468899999887 57888875
No 16
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=25.11 E-value=1e+02 Score=22.28 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=22.4
Q ss_pred CceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEE
Q 028870 142 GIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLI 180 (202)
Q Consensus 142 G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~ 180 (202)
|...+ ...|+||.+ +.++...+ .+|.|..+|..
T Consensus 47 g~~~l--~v~v~~p~~---~~~~v~d~-~dGty~v~Y~p 79 (119)
T 2k9u_A 47 GAGGL--SIAVEGPSK---AEIAFEDR-KDGSCGVSYVV 79 (119)
T ss_dssp CSEEE--EEEEESSSC---CEEEEECC-SSSEEEEEEEC
T ss_pred CCCcE--EEEEeCCCC---CeEEEEEC-CCCEEEEEEEE
Confidence 55444 456899987 66666554 67999887753
No 17
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.08 E-value=20 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHhcchhhHhh
Q 028870 90 KEYKIFNKALKRIQDDGQVRVR 111 (202)
Q Consensus 90 s~~~iy~~Al~~ik~d~~V~~~ 111 (202)
+|+.-+++++++|.+|||-..+
T Consensus 31 ~~~~tWe~~~~~i~~DpRY~al 52 (71)
T 1uzc_A 31 PSNASWEQAMKMIINDPRYSAL 52 (71)
T ss_dssp CTTCCHHHHHHHHHTSGGGGGC
T ss_pred CCCCCHHHHHHHHccCcccccc
Confidence 4788899999999999998754
No 18
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=23.96 E-value=1.8e+02 Score=19.94 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEE
Q 028870 147 EVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLI 180 (202)
Q Consensus 147 ~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~ 180 (202)
.+...|+||.+ +.++...+ .+|.|..+|.-
T Consensus 38 ~l~v~v~~p~~---~~~~v~d~-~dGty~v~Y~p 67 (97)
T 2bp3_A 38 GLSLAIEGPSK---AEISCTDN-QDGTCSVSYLP 67 (97)
T ss_dssp EEEEEEEESSC---CEEEEEEC-SSSEEEEEEEC
T ss_pred cEEEEEECCCC---CEEEEEEC-CCCEEEEEEEe
Confidence 34557899986 45565554 67999888754
No 19
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=22.75 E-value=2.2e+02 Score=20.46 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=34.1
Q ss_pred eccccCccccccccccceEEECCCCceEEEE----------EEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECC
Q 028870 118 GYGQESRNRAARQRIPNRVYTDEFGIEHVEV----------NFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITS 185 (202)
Q Consensus 118 ayG~~s~~r~~R~rI~~~~~~d~~G~eh~~m----------~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~VdV~g 185 (202)
.||..++.| +++ -||.+-++= .|.|.+.+-+..+.+++.. ...|+|. ++|+|
T Consensus 22 eHgtttGkr--------vi~--VDGkev~r~~wmfklvGke~F~ig~~~~k~~I~I~a~~---~~~y~Yt---L~Vng 83 (90)
T 3mx7_A 22 EHGTTSGKR--------VVY--VDGKEEIRKEWMFKLVGKETFYVGAAKTKATINIDAIS---GFAYEYT---LEING 83 (90)
T ss_dssp EECTTTCCE--------EEE--ETTEEEEEECCCSCCCEEEEEEETTTTEEEEEEEEEET---TTEEEEE---EEETT
T ss_pred EeccccceE--------EEE--ECCEEEEecCCeEEEEeeEeEEECCcceEEEEEEEecC---CccEEEE---EEECC
Confidence 367666643 333 466655543 5888888889999999854 4677773 45555
No 20
>2qng_A Uncharacterized protein SAV2460; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Streptomyces avermitilis}
Probab=22.25 E-value=73 Score=25.89 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=27.8
Q ss_pred eEEECCCCceEEEEEEEEEc-CCCceEEEEEEEEcCCCCceEEEEE
Q 028870 135 RVYTDEFGIEHVEVNFYIRG-PHGAGKVFTEMFKDKEDKQWKFTYL 179 (202)
Q Consensus 135 ~~~~d~~G~eh~~m~F~V~G-p~g~G~V~le~~k~~~~g~wey~yL 179 (202)
+...| .|.|-++ |.++. ..-+++|..|..+. .+|+|+|+-+
T Consensus 137 iri~d-~g~elar--y~l~~~~~etA~v~gElYR~-~~g~WKfrAv 178 (199)
T 2qng_A 137 LRMRE-GYTVLAE--DDFGGVLGSTAATVGEFVRD-DSGEWTFHPG 178 (199)
T ss_dssp EEEEE-TTEEEEE--ECSTTCTTCSEEEEEEEEEC-TTSCEEEECC
T ss_pred EEEEe-CCeEEEE--EecCCCCCceEEEEEEEEEc-CCCCEEEEEE
Confidence 34445 5655444 55554 45699999999995 2499999754
No 21
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=21.99 E-value=89 Score=22.35 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=23.3
Q ss_pred CceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 028870 142 GIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 179 (202)
Q Consensus 142 G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL 179 (202)
|...+ ...|.||.|+ .+.+++..+ .+|.|+..|.
T Consensus 42 G~~~l--~V~v~~p~g~-~~~~~v~d~-~dGty~v~Y~ 75 (115)
T 2d7m_A 42 GEGLL--TVQILDPEGK-PKKANIRDN-GDGTYTVSYL 75 (115)
T ss_dssp CSSCE--EEEEECTTSC-BCCEEEEEC-SSSCEEEEEC
T ss_pred CCCEE--EEEEECCCCC-eeeeEEEEC-CCCEEEEEEE
Confidence 55444 4568999876 566676665 6899987773
No 22
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=21.91 E-value=47 Score=24.31 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.4
Q ss_pred hhhccCCcchHHHHHHHHHHhcchhhH
Q 028870 83 KELIFEPKEYKIFNKALKRIQDDGQVR 109 (202)
Q Consensus 83 ~ELf~~~s~~~iy~~Al~~ik~d~~V~ 109 (202)
.+-|..++....|++|++.+++||.|.
T Consensus 80 ~~k~~~~~K~k~f~~Al~Eie~~p~v~ 106 (110)
T 1ri0_A 80 KEKFGKPNKRKGFSEGLWEIENNPTVK 106 (110)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHTCSSCC
T ss_pred HHHHccccccHHHHHHHHHHHhCcCCC
Confidence 344455556789999999999999884
No 23
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=20.92 E-value=1.1e+02 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=22.4
Q ss_pred CceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 028870 142 GIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 179 (202)
Q Consensus 142 G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL 179 (202)
|...+. ..|+||.|. .+.+++..+ .+|.|+..|.
T Consensus 28 G~~~l~--v~v~~p~g~-~~~~~v~d~-~dGty~v~Y~ 61 (89)
T 3cnk_A 28 GNNMLL--VGVHGPRTP-CEEILVKHV-GSRLYSVSYL 61 (89)
T ss_dssp CSCCEE--EEEECSSSC-CSEEEEEEE-ETTEEEEEEE
T ss_pred CCCcEE--EEEECCCCC-ceeEEEEEC-CCCEEEEEEE
Confidence 555554 468899975 256666554 5799987774
No 24
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=20.36 E-value=2.6e+02 Score=22.38 Aligned_cols=34 Identities=9% Similarity=-0.070 Sum_probs=23.8
Q ss_pred CCCceEEEEEEE-EEcCCCceEEEEEEEEcCCCCc
Q 028870 140 EFGIEHVEVNFY-IRGPHGAGKVFTEMFKDKEDKQ 173 (202)
Q Consensus 140 ~~G~eh~~m~F~-V~Gp~g~G~V~le~~k~~~~g~ 173 (202)
-+|.-+..+.|. ++--||.+.|++.++.-..+..
T Consensus 20 ~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~ 54 (191)
T 3tre_A 20 VDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRV 54 (191)
T ss_dssp ETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCE
T ss_pred ECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCE
Confidence 478888877774 4434799999999977544433
No 25
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=20.35 E-value=1.9e+02 Score=24.65 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=25.8
Q ss_pred EEEcCCC-c-eEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEE
Q 028870 151 YIRGPHG-A-GKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 192 (202)
Q Consensus 151 ~V~Gp~g-~-G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Ii 192 (202)
.|.|..| + |+|.=-++. ..+|..|||.||.. .+++.+|
T Consensus 152 ~Vyg~DGe~iGsV~Dl~VD---~~eg~VRYLVVdtG-ggrkVLL 191 (260)
T 1rzh_H 152 PVRGCDLEIAGKVVDIWVD---IPEQMARFLEVELK-DGSTRLL 191 (260)
T ss_dssp EEEETTSCEEEEEEEEEEE---TTTTEEEEEEEECT-TSCEEEE
T ss_pred EeEcCCCCeeEEEEEEEEE---CCCCEEEEEEEEeC-CCCEEEe
Confidence 4555433 3 888777777 46899999999995 3444443
No 26
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=20.21 E-value=1.5e+02 Score=20.73 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=24.0
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 028870 141 FGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 179 (202)
Q Consensus 141 ~G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL 179 (202)
-|... +...|.+|.|. .+.+++..+ .+|.|+.+|.
T Consensus 36 aG~~~--l~v~i~~~~g~-~~~~~v~d~-~dGty~V~Y~ 70 (100)
T 3rgh_A 36 AGSAE--LTIEICSEAGL-PAEVYIQDH-GDGTHTITYI 70 (100)
T ss_dssp SCSCC--EEEEEECTTSC-BCEEEEEEC-SSSEEEEEEE
T ss_pred CCCce--EEEEEECCCCC-EeEEEEEeC-CCCEEEEEEE
Confidence 35544 45578888875 567777665 6799887775
Done!