Query 028870
Match_columns 202
No_of_seqs 158 out of 236
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 05:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028870.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028870hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dk4a1 a.140.6.1 (A:8-70) Pre 49.0 1.8 0.00013 28.0 0.2 27 104-132 21-50 (63)
2 d1w2za3 d.17.2.1 (A:99-206) Co 48.4 6.6 0.00048 27.4 3.2 88 94-201 9-101 (108)
3 d1d6za3 d.17.2.1 (A:186-300) C 39.7 20 0.0014 25.0 4.7 20 94-113 6-25 (115)
4 d1r4ga_ a.8.5.1 (A:) RNA polym 37.0 7 0.00051 24.0 1.5 23 90-112 19-41 (53)
5 d2nlua1 b.34.9.2 (A:1-100) Hep 31.4 9.8 0.00071 25.7 1.7 26 84-109 71-96 (100)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 27.7 23 0.0017 19.1 2.5 12 75-86 4-15 (32)
7 d2dj4a1 b.1.18.10 (A:8-108) Fi 26.7 41 0.003 21.9 4.4 35 141-179 33-67 (101)
8 d1eysh1 b.41.1.1 (H:59-259) Ph 24.9 98 0.0072 23.3 6.9 39 151-192 97-137 (201)
9 d2h3ka1 b.1.28.1 (A:1-144) Iro 23.0 55 0.004 23.3 4.6 63 118-181 62-134 (144)
10 d2i5nh1 b.41.1.1 (H:37-258) Ph 20.6 1.2E+02 0.0087 23.3 6.7 39 151-192 120-160 (222)
No 1
>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.96 E-value=1.8 Score=28.02 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=19.0
Q ss_pred cchhhHhh---hCCCceeccccCccccccccc
Q 028870 104 DDGQVRVR---IGSPITGYGQESRNRAARQRI 132 (202)
Q Consensus 104 ~d~~V~~~---LG~PI~ayG~~s~~r~~R~rI 132 (202)
.|.+|+.. ||+||.=|||....| |+|+
T Consensus 21 ~~~eV~~~LR~lgePI~lFGE~~~~r--r~RL 50 (63)
T d2dk4a1 21 SRQEVIRRLRERGEPIRLFGETDYDA--FQRL 50 (63)
T ss_dssp CHHHHHHHHHHHTCCSSCTTCCHHHH--HHHH
T ss_pred CHHHHHHHHHHcCCCeehhcCChHHH--HHHH
Confidence 35567666 599999999987654 4443
No 2
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=48.36 E-value=6.6 Score=27.40 Aligned_cols=88 Identities=6% Similarity=0.014 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcchhhHhhh---CCCceeccccCccccccccccceEEECCCCceEEEEEEEEEcCCCceEEEEEEEEcCC
Q 028870 94 IFNKALKRIQDDGQVRVRI---GSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKE 170 (202)
Q Consensus 94 iy~~Al~~ik~d~~V~~~L---G~PI~ayG~~s~~r~~R~rI~~~~~~d~~G~eh~~m~F~V~Gp~g~G~V~le~~k~~~ 170 (202)
-|..|.+.+++||+++++| |-++..---. .|.--. +-+.+|+.-++.-.+++.+.... |++= -
T Consensus 9 E~~~a~~~~~~dp~~~~al~~RGId~~~V~~d---pw~~G~-----~~~e~~~Rl~~~~~f~r~~~~N~--YA~P----I 74 (108)
T d1w2za3 9 EQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCS---SFTMGW-----FGEEKNVRTVRLDCFMKESTVNI--YVRP----I 74 (108)
T ss_dssp HHHHHTTGGGGCHHHHHHHHHHTCCGGGEEEE---EEECCC-----SSCSCCCCEEEEEEEECTTCSCG--GGSB----C
T ss_pred HHHHHHHHHHhCHHHHHHHHHcCCChhhEEEe---cccccc-----cCCCCCceEEEEEEEEecCCCCc--cccc----c
Confidence 4788999999999999997 6443211000 010000 00235565666666666431111 1111 1
Q ss_pred CCceEEEEEEEEECCCCeeEEEecCC--CCCCC
Q 028870 171 DKQWKFTYLIVEITSPYKAQLMLESY--MPAAP 201 (202)
Q Consensus 171 ~g~wey~yL~VdV~g~~r~~Iile~~--~p~~~ 201 (202)
.| -...||++. .+.|=++|+ +|.|.
T Consensus 75 eG----l~~vVDl~~--~~Vi~i~D~~~vPiP~ 101 (108)
T d1w2za3 75 TG----ITIVADLDL--MKIVEYHDRDIEAVPT 101 (108)
T ss_dssp CS----EEEEEETTT--TEEEEEEECCCCCCCC
T ss_pred Cc----cEEEEECCC--CEEEEEECCCCccCCC
Confidence 11 246677775 346658888 56665
No 3
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=39.73 E-value=20 Score=25.02 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcchhhHhhhC
Q 028870 94 IFNKALKRIQDDGQVRVRIG 113 (202)
Q Consensus 94 iy~~Al~~ik~d~~V~~~LG 113 (202)
-|..|-+.+++||+++++|-
T Consensus 6 e~~~~e~~~~~dp~~~aal~ 25 (115)
T d1d6za3 6 DFASVQNIINNSEEFAAAVK 25 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHH
Confidence 37889999999999999973
No 4
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=37.02 E-value=7 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHhcchhhHhhh
Q 028870 90 KEYKIFNKALKRIQDDGQVRVRI 112 (202)
Q Consensus 90 s~~~iy~~Al~~ik~d~~V~~~L 112 (202)
+.-+.|=+.+.+|+.|.+|.+++
T Consensus 19 ~~K~aYi~~L~~Cktd~EV~evM 41 (53)
T d1r4ga_ 19 AEKAAYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp HHHHHHHHHHHTCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHH
Confidence 35788999999999999998875
No 5
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.38 E-value=9.8 Score=25.71 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=20.8
Q ss_pred hhccCCcchHHHHHHHHHHhcchhhH
Q 028870 84 ELIFEPKEYKIFNKALKRIQDDGQVR 109 (202)
Q Consensus 84 ELf~~~s~~~iy~~Al~~ik~d~~V~ 109 (202)
|-+...+....|.+||+.+++||.+.
T Consensus 71 ~~~~~~~k~~~f~~Av~e~e~~p~~~ 96 (100)
T d2nlua1 71 EKFGKPNKRKGFSEGLWEIENNPTVK 96 (100)
T ss_dssp HHHSCCSCCHHHHHHHHHHHTCSSCS
T ss_pred HHHhcccchHHHHHHHHHHHhCcccc
Confidence 44456667789999999999999875
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.74 E-value=23 Score=19.11 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=7.4
Q ss_pred HHhHhhhhhhhc
Q 028870 75 GAAAYAVFKELI 86 (202)
Q Consensus 75 g~v~Y~l~~ELf 86 (202)
|+++|.+|-.||
T Consensus 4 gavfyivfialf 15 (32)
T d2e74e1 4 GAVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeHHHHHHHHH
Confidence 455666666665
No 7
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.68 E-value=41 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 028870 141 FGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 179 (202)
Q Consensus 141 ~G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL 179 (202)
-|...+ ...|.||.|+= +.+++.++ .+|.|+..|.
T Consensus 33 aG~g~l--~v~i~~p~g~~-~~~~v~~~-~dG~y~v~y~ 67 (101)
T d2dj4a1 33 AGLAPL--EVRVLGPRGLV-EPVNVVDN-GDGTHTVTYT 67 (101)
T ss_dssp TCSCCE--EEEEECSSSCE-ECCCCEEC-SSSEEEEEEC
T ss_pred CCCCCE--EEEEEECCCCE-eEEEEEeC-CCCEEEEEEE
Confidence 345444 55689998763 55666664 5788876654
No 8
>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}
Probab=24.90 E-value=98 Score=23.35 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=26.6
Q ss_pred EEEcCCC-c-eEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEE
Q 028870 151 YIRGPHG-A-GKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 192 (202)
Q Consensus 151 ~V~Gp~g-~-G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Ii 192 (202)
.|.|.-| + |+|.=-++. ..+|..+||.||+.+-.++.++
T Consensus 97 ~V~~~DG~~vGtV~Dv~vD---~~e~~vRYleVdtg~ggk~vLv 137 (201)
T d1eysh1 97 TVVGLDGEVAGTVSDVWVD---RSEPQIRYLEVEVAANKKKVLL 137 (201)
T ss_dssp EEECSSSCEEEEEEEEEEE---TTTTEEEEEEEEETTTCCEEEE
T ss_pred eeEcCCCCEEEEEEEEEEE---CCCCcEEEEEEEecCCCcEEEE
Confidence 3555544 3 777666666 4789999999999765555554
No 9
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Probab=22.98 E-value=55 Score=23.32 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=39.9
Q ss_pred eccccCccccccc-------c--ccceEEECCCCceEEEEEEEEE-cCCCceEEEEEEEEcCCCCceEEEEEEE
Q 028870 118 GYGQESRNRAARQ-------R--IPNRVYTDEFGIEHVEVNFYIR-GPHGAGKVFTEMFKDKEDKQWKFTYLIV 181 (202)
Q Consensus 118 ayG~~s~~r~~R~-------r--I~~~~~~d~~G~eh~~m~F~V~-Gp~g~G~V~le~~k~~~~g~wey~yL~V 181 (202)
..|.-+++-|+.- . |.-+.| |.-...|..++|+|. |.+---.|...-..+.+..+|+|..|..
T Consensus 62 EL~l~tastWkKFEVYE~dkKLPv~LVSY-d~v~kD~AYIRFpVSnGt~evKIVSSt~~~~~ee~~YDYT~mvF 134 (144)
T d2h3ka1 62 ELDINTASTWKKFEVYENNQKLPVRLVSY-SPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTKLVF 134 (144)
T ss_dssp EEEETTGGGCCCCCEEETTEEECCEEEEE-ECTTTCEEEEEEECCTTCCEEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred EEcccccceeeeeEEecCCccCceEEEec-CCCCCcceEEEEecCCCceEEEEEEEeeeCCCcccccceEEEEE
Confidence 3455555566542 1 333445 565788999999998 5666666666666655555777877654
No 10
>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=20.62 E-value=1.2e+02 Score=23.25 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=26.9
Q ss_pred EEEcCCC--ceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEE
Q 028870 151 YIRGPHG--AGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 192 (202)
Q Consensus 151 ~V~Gp~g--~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Ii 192 (202)
.|-|.-| -|+|.=-.+. ..+|..+||.||+.+-.++.++
T Consensus 120 ~V~g~DGekIGtV~DvwVD---~~e~~vRYleVetg~ggk~vLv 160 (222)
T d2i5nh1 120 PVVAADGVEAGTVTDLWVD---RSEHYFRYLELSVAGSARTALI 160 (222)
T ss_dssp EEECTTSCEEEEEEEEEEE---TTTTEEEEEEEEETTTTEEEEE
T ss_pred eeEcCCCCeeeEEEEEEEe---CCCCeEEEEEEEeCCCCceEee
Confidence 3555555 4777666665 4689999999999875555554
Done!