BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028871
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1
OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
Length = 283
Score = 294 bits (752), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/202 (67%), Positives = 166/202 (82%), Gaps = 1/202 (0%)
Query: 1 MRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLP 60
++ ++S NP E+G+PTIITWN GGN+VAVEGSWDNW SR+ L +SGKDHSIL VLP
Sbjct: 83 IQWNQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSRKKLQKSGKDHSILFVLP 142
Query: 61 SGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPESSY 120
SG+YHYK IVDG+ +YIPDLPFVADE+G VCN+LDVH+ VPE +S+ EFEAP SP+ SY
Sbjct: 143 SGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPDHSY 202
Query: 121 SQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLNHVFVDDGWKSKSVVA 180
Q LP+ EDYAKEPL VP QLHLTLLGT + A ++KP+HVVLNHVF++ GW +S+VA
Sbjct: 203 GQTLPAAEDYAKEPLAVPPQLHLTLLGT-TEETAIATKPQHVVLNHVFIEQGWTPQSIVA 261
Query: 181 LGLTHRFQSKYVTVVLYKPHKR 202
LGLTHRF+SKY+TVVLYKP R
Sbjct: 262 LGLTHRFESKYITVVLYKPLTR 283
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/196 (55%), Positives = 137/196 (69%), Gaps = 5/196 (2%)
Query: 10 ASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFI 69
ASN E+G+PT+ITW +GG E+AVEGSWDNW +R L RSGKD +I+ VLPSGVY Y+FI
Sbjct: 96 ASN--EQGIPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFI 153
Query: 70 VDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEED 129
VDG WR+ P+LP D+ G N+LD+ VPE + S++ FE P SPE+SYS L ED
Sbjct: 154 VDGQWRHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQSPENSYSNLLLGAED 213
Query: 130 YAKEPLTVPSQLHLTLLG--TENSDEASS-SKPKHVVLNHVFVDDGWKSKSVVALGLTHR 186
Y+KEP VP L +TLL N D S +P+HV+LNH+++ G SVVALG THR
Sbjct: 214 YSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHR 273
Query: 187 FQSKYVTVVLYKPHKR 202
F +KYVTVVLYK +R
Sbjct: 274 FLAKYVTVVLYKSLQR 289
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 13 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDG 72
P ++ PT+I W+ GG EV + GS++NW+++ L +S D +L LP G + YKF VDG
Sbjct: 72 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDG 131
Query: 73 DWRYIPDLPFVADELGGVCNLLDVHSCVPEI-----LDSVAEFEA-----PASPESSYSQ 122
W + P P V +LG + NL+ V E+ LDS+ E +SP Y Q
Sbjct: 132 QWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQ 191
Query: 123 ---ALPSEEDYAKEPLTVPSQLHLTLLGTEN--SDEASSSKPKHVVLNHVFVDDGWKSKS 177
A SEE + P+ P L + L N D A +P HV+LNH++ S
Sbjct: 192 EMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDS 249
Query: 178 VVALGLTHRFQSKYVTVVLYKP 199
V+ L THR++ KYVT +LYKP
Sbjct: 250 VMVLSATHRYKKKYVTTLLYKP 271
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 13 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDG 72
P ++ PT+I W+ GG EV + GS++NW+++ L +S D +L LP G + YKF VDG
Sbjct: 71 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDG 130
Query: 73 DWRYIPDLPFVADELGGVCNLLDVHSCVPEI-----LDSVAEFEA-----PASPESSYSQ 122
W + P P V +LG + NL+ V E+ LDS+ E +SP Y Q
Sbjct: 131 QWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQ 190
Query: 123 AL---PSEEDYAKEPLTVPSQLHLTLLGTEN--SDEASSSKPKHVVLNHVFVDDGWKSKS 177
+ SEE + P+ P L + L N D A +P HV+LNH++ S
Sbjct: 191 EMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--TKDS 248
Query: 178 VVALGLTHRFQSKYVTVVLYKP 199
V+ L THR++ KYVT +LYKP
Sbjct: 249 VMVLSATHRYKKKYVTTLLYKP 270
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 13 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDG 72
P ++ PT+I W+ GG EV + GS++NW+++ L +S D +L LP G + YKF VDG
Sbjct: 71 PAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDG 130
Query: 73 DWRYIPDLPFVADELGGVCNLLDVHSCVPEI-----LDSVAEFEA-----PASPESSYSQ 122
W + P P V +LG + NL+ V E+ LDS+ E +SP Y Q
Sbjct: 131 QWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQ 190
Query: 123 AL---PSEEDYAKEPLTVPSQLHLTLLGTEN--SDEASSSKPKHVVLNHVFVDDGWKSKS 177
+ SEE + P+ P L + L N D A +P HV+LNH++ S
Sbjct: 191 EMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDS 248
Query: 178 VVALGLTHRFQSKYVTVVLYKP 199
V+ L THR++ KYVT +LYKP
Sbjct: 249 VMVLSATHRYKKKYVTTLLYKP 270
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 3 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSG 62
QH+ A P + PT+ W GG EV + GS++NW S+ L RS + +L LP G
Sbjct: 64 QHDLEANDKAPAQ-ARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEG 121
Query: 63 VYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVA--------EFEAPA 114
+ YKF VDG W + P P V +LG V N++ V E+ D++ E +
Sbjct: 122 EHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSS 181
Query: 115 SPESSYSQA--LPSEEDYAKEPLTVPSQLHLTLLGTE---NSDEASSSKPKHVVLNHVF- 168
SP Y Q + E+ K P +P L +L + + D A +P HV+LNH++
Sbjct: 182 SPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYA 241
Query: 169 --VDDGWKSKSVVALGLTHRFQSKYVTVVLYKP 199
+ DG V+ L THR++ KYVT +LYKP
Sbjct: 242 LSIKDG-----VMVLSATHRYKKKYVTTLLYKP 269
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 23/213 (10%)
Query: 3 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSG 62
QH+ P + PT+ W GG EV + GS++NW S+ L RS + +L LP G
Sbjct: 64 QHDLEVNEKAPAQ-ARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEG 121
Query: 63 VYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVA--------EFEAPA 114
+ YKF VDG W + P P V +LG V N++ V E+ D++ E +
Sbjct: 122 EHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSS 181
Query: 115 SPESSYSQA--LPSEEDYAKEPLTVPSQLHLTLLGTE---NSDEASSSKPKHVVLNHVF- 168
SP Y Q + E+ K P +P L +L + + D A +P HV+LNH++
Sbjct: 182 SPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYA 241
Query: 169 --VDDGWKSKSVVALGLTHRFQSKYVTVVLYKP 199
+ DG V+ L THR++ KYVT +LYKP
Sbjct: 242 LSIKDG-----VMVLSATHRYKKKYVTTLLYKP 269
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 19 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIP 78
PT+ W GG EV + GS++NW S+ L RS + +L LP G + YKF VDG W + P
Sbjct: 79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDP 137
Query: 79 DLPFVADELGGVCNLLDVHSCVPEILDSVA--------EFEAPASPESSYSQA--LPSEE 128
P V +LG V N++ V E+ D++ E +SP Y Q + E
Sbjct: 138 SEPVVTSQLGTVNNVIQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYISKPE 197
Query: 129 DYAKEPLTVPSQLHLTLLGTE---NSDEASSSKPKHVVLNHVF---VDDGWKSKSVVALG 182
+ K P +P L +L + + D A +P HV+LNH++ + DG V+ L
Sbjct: 198 ERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG-----VMVLS 252
Query: 183 LTHRFQSKYVTVVLYKP 199
THR++ KYVT +LYKP
Sbjct: 253 ATHRYKKKYVTTLLYKP 269
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 19 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIP 78
PT+ W GG EV + GS++NW S+ L RS + +L LP G + YKF VDG W + P
Sbjct: 79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDP 137
Query: 79 DLPFVADELGGVCNLLDVHSCVPEILDSVA--------EFEAPASPESSYSQA--LPSEE 128
P V +LG V N++ V E+ D++ E +SP Y Q + E
Sbjct: 138 SEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYVCKPE 197
Query: 129 DYAKEPLTVPSQLHLTLLGTE---NSDEASSSKPKHVVLNHVF---VDDGWKSKSVVALG 182
+ + P +P L +L + + D A +P HV+LNH++ + DG V+ L
Sbjct: 198 ERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG-----VMVLS 252
Query: 183 LTHRFQSKYVTVVLYKP 199
THR++ KYVT +LYKP
Sbjct: 253 ATHRYKKKYVTTLLYKP 269
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 19 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIP 78
PT+ W GG EV + GS++NW S+ L RS + +L LP G + YKF VDG W + P
Sbjct: 79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDP 137
Query: 79 DLPFVADELGGVCNLLDVHSCVPEILDSVA--------EFEAPASPESSYSQA--LPSEE 128
P V +LG V N++ V E+ D++ E +SP Y Q + E
Sbjct: 138 SEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYVCKPE 197
Query: 129 DYAKEPLTVPSQLHLTLLGTE---NSDEASSSKPKHVVLNHVF---VDDGWKSKSVVALG 182
+ + P +P L +L + + D A +P HV+LNH++ + DG V+ L
Sbjct: 198 ERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG-----VMVLS 252
Query: 183 LTHRFQSKYVTVVLYKP 199
THR++ KYVT +LYKP
Sbjct: 253 ATHRYKKKYVTTLLYKP 269
>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3
OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
Length = 114
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 106 SVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLN 165
+V FE P SP SSY+ S ED ++P VP L +LLG + S E + + P++VVLN
Sbjct: 13 TVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSMELAYA-PQNVVLN 71
Query: 166 HVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR 202
H+++++ +SVVALG +HRF++K+VTVV+YKP +R
Sbjct: 72 HLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 18 VPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYI 77
VPTII W GG V V GS+ W + L +S +D+++LL L G +KF+VDG W
Sbjct: 99 VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKS-EDYTVLLQLRPGTQRFKFLVDGIWCCS 157
Query: 78 PDLPFVADELGGVCNLLDVH------SCVPEILDSV-AEFEAPASPES-SYSQALPS--- 126
D P D G + N L+V + + E L V + ES YS +P+
Sbjct: 158 SDFPTATDAEGNLYNYLEVEANEKLGASIDERLSQVHTDLPMEEKSESEQYSTEIPAFLT 217
Query: 127 ----EEDYAKEPLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVV 179
+E +P ++P L +L + + D++ P HV+LNH+ + V+
Sbjct: 218 SNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAAN--TQLGVL 275
Query: 180 ALGLTHRFQSKYVTVVLYK 198
AL T R+ KYVT ++K
Sbjct: 276 ALSATTRYHRKYVTTAMFK 294
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus
scrofa GN=PRKAB1 PE=1 SV=1
Length = 122
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 19 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIP 78
PT+ W GG EV + GS++NW S+ L RS + +L LP G + YKF+VDG W + P
Sbjct: 44 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDP 102
Query: 79 DLPFVADELGGVCNLLDV 96
P V +LG V N++ V
Sbjct: 103 SEPVVTSQLGTVNNIIQV 120
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 84/259 (32%)
Query: 19 PTIITWNYGGNEVAVEGSWDNWTSRRILH------RSGKDHSILLVLPSGVYHYKFIVDG 72
P ITW GGN+V V GS+ W R+++ + G H + L LP G + ++FIVD
Sbjct: 163 PVDITWQQGGNKVYVTGSFTGW--RKMIGLVPVPGQPGLMH-VKLQLPPGTHRFRFIVDN 219
Query: 73 DWRYIPDLPFVADELGGVCNLLDVHSCVP------------------------------- 101
+ R+ LP D++G N ++V S P
Sbjct: 220 ELRFSDYLPTATDQMGNFVNYMEV-SAPPDWGNEPQQHLAEKKANHVDDSKLSKRPMSAR 278
Query: 102 ------------EILDSVAEF--EAPASPESSYSQALPS--------EEDYAK------- 132
++ D F E PA P Y+Q +P+ E+ Y
Sbjct: 279 SRIALEIEKEPDDMGDGYTRFHDETPAKPNLEYTQDIPAVFTDPNVMEQYYLTLDQQQNN 338
Query: 133 -------EPLTVPSQLHLTLLGTENSDEASSSK-----PKHVVLNHVFVDDGWKSKSVVA 180
P +P L +L + ++ + ++ P HV+LNH+ K ++
Sbjct: 339 HQNMAWLTPPQLPPHLENVILNSYSNAQTDNTSGALPIPNHVILNHLAT-SSIKHNTLCV 397
Query: 181 LGLTHRFQSKYVTVVLYKP 199
+ R++ KYVT +LY P
Sbjct: 398 ASIV-RYKQKYVTQILYTP 415
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 18 VPTIITWNYGGNEVAVEGSWDNWTSRRIL------HRSGKDHSILLVLPSGVYHYKFIVD 71
VP I W GG++V V GS+ W R+++ +G H L +LP G + ++FIVD
Sbjct: 164 VPVEIRWQQGGSKVYVTGSFTKW--RKMIGLIPDSDNNGSFHVKLRLLP-GTHRFRFIVD 220
Query: 72 GDWRYIPDLPFVADELGGVCNLLDVH 97
+ R LP D++G N ++V
Sbjct: 221 NELRVSDFLPTATDQMGNFVNYIEVR 246
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 159 PKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKP 199
P HVVLNH V K ++ + R++ KYVT +LY P
Sbjct: 373 PNHVVLNH-LVTSSIKHNTLCVASIV-RYKQKYVTQILYTP 411
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 5 ESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTS---RRILHRSGKDHSILLVLPS 61
++AAS L PT W YGG V + GS+ WT L ++ L
Sbjct: 10 RGNSAASGQLL--TPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTP 67
Query: 62 GVYHYKFIVDGDWRYIPDLPFVADELGGVCNLL 94
G + YKF VDG+WR+ PFV+ GGV N +
Sbjct: 68 GYHQYKFFVDGEWRHDEHQPFVSGN-GGVVNTI 99
>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
thaliana GN=LSF1 PE=1 SV=1
Length = 591
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 17 GVPT---IITWN-YGGNEVAVEGSW-DNWTS-RRILHRSGKDHSILLVLPSGVYHYKFIV 70
G PT WN + G EV + G + NW + H+ G + L G Y+YK+I+
Sbjct: 451 GTPTHSVTFVWNGHEGEEVLLVGDFTGNWKEPIKATHKGGPRFETEVRLTQGKYYYKYII 510
Query: 71 DGDWRYIPDLPFVADELGGVCNLL---DVHSCVPEI 103
+GDWR+ P D+ G N++ DV + P I
Sbjct: 511 NGDWRHSATSPTERDDRGNTNNIIVVGDVANVRPTI 546
>sp|E7NIP0|CRP1_YEASO Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersO) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|C7GJZ2|CRP1_YEAS2 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|P38845|CRP1_YEAST Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CRP1 PE=1 SV=1
Length = 465
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|A6ZT54|CRP1_YEAS7 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|E7KDM2|CRP1_YEASA Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain AWRI796) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|B3LSR0|CRP1_YEAS1 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|E7LVH4|CRP1_YEASV Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain VIN 13) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|E7KPJ0|CRP1_YEASL Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin QA23) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|C8Z9U3|CRP1_YEAS8 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=CRP1 PE=3
SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVW 68
>sp|E7Q4T7|CRP1_YEASB Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersB) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 22 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH-----SILLVLPSGVYHYKFIVDGDW 74
+W G +V + G++D+W L ++ K + + L + +KFIVDG W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLXNKDDTFQFKFIVDGVW 68
>sp|B3LP25|MDG1_YEAS1 Signal transduction protein MDG1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=MDG1 PE=3 SV=1
Length = 366
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 24 WNYGGNEVAVEGSWDNW--TSRRILHRSGKDHSILLVL---PSGVYHYKFIVDGDWRYIP 78
W G + + G++D+W T + SG L V PS +++KFIVDG W
Sbjct: 12 WPKGPEAIILTGTFDDWKGTLPMVKDPSGAFEITLPVTFDSPSSKFYFKFIVDGQWLPSK 71
Query: 79 DLPFVADELGGVCN 92
D DE GV N
Sbjct: 72 DYKVNIDE--GVEN 83
>sp|C7GTE8|MDG1_YEAS2 Signal transduction protein MDG1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=MDG1 PE=3 SV=1
Length = 366
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 24 WNYGGNEVAVEGSWDNW--TSRRILHRSGKDHSILLVL---PSGVYHYKFIVDGDWRYIP 78
W G + + G++D+W T + SG L V PS +++KFIVDG W
Sbjct: 12 WPKGPEAIILTGTFDDWKGTLPMVKDPSGAFEITLPVTFDSPSSKFYFKFIVDGQWLPSK 71
Query: 79 DLPFVADELGGVCN 92
D DE GV N
Sbjct: 72 DYKVNIDE--GVEN 83
>sp|P53885|MDG1_YEAST Signal transduction protein MDG1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MDG1 PE=1 SV=1
Length = 366
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 24 WNYGGNEVAVEGSWDNW--TSRRILHRSGKDHSILLVL---PSGVYHYKFIVDGDWRYIP 78
W G + + G++D+W T + SG L V PS +++KFIVDG W
Sbjct: 12 WPKGPEAIILTGTFDDWKGTLPMVKDPSGAFEITLPVTFDSPSSKFYFKFIVDGQWLPSK 71
Query: 79 DLPFVADELGGVCN 92
D DE GV N
Sbjct: 72 DYKVNIDE--GVEN 83
>sp|C8ZG55|MDG1_YEAS8 Signal transduction protein MDG1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=MDG1 PE=3
SV=1
Length = 366
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 24 WNYGGNEVAVEGSWDNW--TSRRILHRSGKDHSILLVL---PSGVYHYKFIVDGDWRYIP 78
W G + + G++D+W T + SG L V PS +++KFIVDG W
Sbjct: 12 WPKGPEAIILTGTFDDWKGTLPMVKDPSGAFEITLPVTFDSPSSKFYFKFIVDGQWLPSK 71
Query: 79 DLPFVADELGGVCN 92
D DE GV N
Sbjct: 72 DYKVNIDE--GVEN 83
>sp|A6ZRR2|MDG1_YEAS7 Signal transduction protein MDG1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=MDG1 PE=3 SV=1
Length = 366
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 24 WNYGGNEVAVEGSWDNW--TSRRILHRSGKDHSILLVL---PSGVYHYKFIVDGDWRYIP 78
W G + + G++D+W T + SG L V PS +++KFIVDG W
Sbjct: 12 WPKGPEAIILTGTFDDWKGTLPMVKDPSGAFEITLPVTFDSPSSKFYFKFIVDGQWLPSK 71
Query: 79 DLPFVADELGGVCN 92
D DE GV N
Sbjct: 72 DYKVNIDE--GVEN 83
>sp|Q04512|HEM1_RHOS4 5-aminolevulinate synthase 1 OS=Rhodobacter sphaeroides (strain
ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hemA PE=3
SV=1
Length = 407
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 43 RRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHS 98
RRIL GKD IL+ S VY +DGD+ I ++ +ADE G + + +VH+
Sbjct: 168 RRILTSIGKDRPILVAFES-VYS----MDGDFGRIEEICDIADEFGALKYIDEVHA 218
>sp|Q9FEB5|DSP4_ARATH Phosphoglucan phosphatase DSP4, chloroplastic OS=Arabidopsis
thaliana GN=DSP4 PE=1 SV=1
Length = 379
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 14 LEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILH-RSGKDHSIL-LVLPSGVYHYKFIVD 71
L++ T+ + G + V + G W R L G IL LP G + YK+I+D
Sbjct: 252 LKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIID 311
Query: 72 GDWRYIPDLPFVA 84
G+W + PF+
Sbjct: 312 GEWTHNEAEPFIG 324
>sp|A1V9Q2|GREA_DESVV Transcription elongation factor GreA OS=Desulfovibrio vulgaris
subsp. vulgaris (strain DP4) GN=greA PE=3 SV=1
Length = 163
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 114 ASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPK 160
+ E Y+ P E DYAK ++V S + +LG E DE P+
Sbjct: 97 SGEEKEYTLLGPDEADYAKGSISVQSPVARAMLGKEEGDEIVVDAPR 143
>sp|Q725M4|GREA_DESVH Transcription elongation factor GreA OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=greA
PE=3 SV=1
Length = 163
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 114 ASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPK 160
+ E Y+ P E DYAK ++V S + +LG E DE P+
Sbjct: 97 SGEEKEYTLLGPDEADYAKGSISVQSPVARAMLGKEEGDEIVVDAPR 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,271,092
Number of Sequences: 539616
Number of extensions: 3713376
Number of successful extensions: 9675
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9605
Number of HSP's gapped (non-prelim): 52
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)