Query 028871
Match_columns 202
No_of_seqs 202 out of 872
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1616 Protein involved in Sn 100.0 2.2E-50 4.7E-55 354.7 14.3 193 8-202 70-289 (289)
2 PF04739 AMPKBI: 5'-AMP-activa 100.0 4.9E-36 1.1E-40 226.2 5.5 84 115-200 2-100 (100)
3 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.7E-27 3.6E-32 172.3 10.1 79 17-95 1-79 (79)
4 cd02861 E_set_proteins_like E 99.8 8.8E-20 1.9E-24 132.2 9.8 76 18-94 2-81 (82)
5 cd02858 Esterase_N_term Estera 99.4 7.1E-12 1.5E-16 91.5 9.5 75 19-94 7-84 (85)
6 cd02688 E_set E or "early" set 98.9 6.3E-09 1.4E-13 73.0 7.8 70 19-88 5-77 (83)
7 PF02922 CBM_48: Carbohydrate- 98.7 6.5E-08 1.4E-12 69.4 6.3 56 19-74 12-74 (85)
8 cd02854 Glycogen_branching_enz 98.6 2.6E-07 5.7E-12 69.5 8.8 64 20-83 7-85 (99)
9 cd02860 Pullulanase_N_term Pul 98.1 2E-05 4.4E-10 58.5 7.6 63 20-84 10-85 (100)
10 cd02855 Glycogen_branching_enz 97.9 0.00015 3.3E-09 53.6 9.4 65 20-84 23-96 (106)
11 PF00686 CBM_20: Starch bindin 97.8 7.6E-05 1.7E-09 55.1 6.9 53 18-70 2-68 (96)
12 cd05808 CBM20_alpha_amylase Al 97.8 0.00015 3.2E-09 53.1 8.3 53 18-70 1-63 (95)
13 cd05818 CBM20_water_dikinase P 97.7 0.00034 7.3E-09 51.6 9.2 63 18-80 2-76 (92)
14 cd02856 Glycogen_debranching_e 97.7 0.00021 4.6E-09 53.5 7.9 52 20-73 11-67 (103)
15 COG0296 GlgB 1,4-alpha-glucan 97.6 0.00013 2.9E-09 70.7 6.9 63 18-81 36-108 (628)
16 PLN02447 1,4-alpha-glucan-bran 97.6 0.00019 4.2E-09 71.0 8.0 62 19-81 115-191 (758)
17 cd05814 CBM20_Prei4 Prei4, N-t 97.5 0.00058 1.3E-08 52.6 8.1 47 26-72 13-68 (120)
18 cd05820 CBM20_novamyl Novamyl 97.5 0.0014 3E-08 49.3 9.9 64 17-80 2-85 (103)
19 cd05809 CBM20_beta_amylase Bet 97.5 0.00083 1.8E-08 50.1 8.6 54 17-70 2-68 (99)
20 PRK12568 glycogen branching en 97.5 0.00029 6.4E-09 69.5 7.4 63 19-82 139-210 (730)
21 PRK12313 glycogen branching en 97.5 0.00042 9E-09 67.3 8.1 65 19-83 39-111 (633)
22 cd02852 Isoamylase_N_term Isoa 97.4 0.00063 1.4E-08 52.0 6.5 55 20-76 9-74 (119)
23 PRK14705 glycogen branching en 97.3 0.00047 1E-08 71.4 7.2 61 19-80 639-709 (1224)
24 PRK14706 glycogen branching en 97.3 0.00065 1.4E-08 66.3 6.9 64 19-83 39-111 (639)
25 cd05816 CBM20_DPE2_repeat2 Dis 97.2 0.0046 1E-07 46.0 9.4 45 26-70 12-64 (99)
26 cd05813 CBM20_genethonin_1 Gen 97.2 0.0014 3.1E-08 48.2 6.6 53 18-70 1-62 (95)
27 PRK05402 glycogen branching en 97.2 0.0012 2.7E-08 65.1 7.8 63 19-81 132-203 (726)
28 PRK05402 glycogen branching en 96.9 0.0023 5E-08 63.2 7.2 61 19-80 29-95 (726)
29 cd05811 CBM20_glucoamylase Glu 96.9 0.012 2.5E-07 44.0 9.5 56 15-70 4-73 (106)
30 cd05817 CBM20_DSP Dual-specifi 96.9 0.0047 1E-07 46.1 7.1 45 26-70 11-62 (100)
31 TIGR02402 trehalose_TreZ malto 96.9 0.0038 8.3E-08 59.7 8.2 60 20-84 1-64 (542)
32 cd05807 CBM20_CGTase CGTase, C 96.8 0.012 2.6E-07 43.8 8.9 54 17-70 2-70 (101)
33 cd02853 MTHase_N_term Maltooli 96.7 0.0055 1.2E-07 44.1 6.3 60 20-83 10-72 (85)
34 TIGR01515 branching_enzym alph 96.7 0.0041 8.8E-08 60.3 7.2 63 19-82 29-101 (613)
35 cd05467 CBM20 The family 20 ca 96.7 0.0075 1.6E-07 43.8 7.0 45 26-70 11-65 (96)
36 cd05810 CBM20_alpha_MTH Glucan 96.6 0.017 3.7E-07 43.0 8.2 53 18-70 1-64 (97)
37 cd05815 CBM20_DPE2_repeat1 Dis 96.0 0.08 1.7E-06 39.2 8.9 49 22-70 6-65 (101)
38 PF03423 CBM_25: Carbohydrate 95.8 0.053 1.2E-06 39.7 7.2 56 19-74 3-74 (87)
39 TIGR02104 pulA_typeI pullulana 95.5 0.042 9.1E-07 53.2 7.1 62 20-82 21-93 (605)
40 cd05806 CBM20_laforin Laforin 95.2 0.11 2.3E-06 40.1 7.3 48 23-70 10-74 (112)
41 PLN02960 alpha-amylase 94.6 0.029 6.2E-07 56.7 3.5 50 22-71 133-198 (897)
42 PF11806 DUF3327: Domain of un 94.4 0.53 1.1E-05 36.6 9.4 81 19-99 3-115 (122)
43 PLN02950 4-alpha-glucanotransf 94.0 0.43 9.4E-06 48.7 10.2 73 13-85 148-237 (909)
44 PLN02950 4-alpha-glucanotransf 93.2 0.7 1.5E-05 47.2 10.2 66 14-79 5-89 (909)
45 TIGR02102 pullulan_Gpos pullul 93.1 0.45 9.9E-06 49.5 8.9 64 20-83 329-408 (1111)
46 TIGR02100 glgX_debranch glycog 92.8 0.32 6.9E-06 48.1 7.1 53 20-74 16-75 (688)
47 PRK10439 enterobactin/ferric e 91.9 0.77 1.7E-05 42.6 8.0 89 13-101 34-166 (411)
48 PF01357 Pollen_allerg_1: Poll 91.7 0.77 1.7E-05 33.1 6.2 61 14-77 10-77 (82)
49 cd02857 CD_pullulan_degrading_ 91.4 1.9 4.2E-05 31.8 8.4 55 16-70 16-79 (116)
50 PRK03705 glycogen debranching 91.0 0.78 1.7E-05 45.2 7.4 52 20-73 21-77 (658)
51 TIGR02103 pullul_strch alpha-1 90.8 0.7 1.5E-05 47.1 7.0 64 19-83 136-215 (898)
52 PLN02316 synthase/transferase 90.3 0.88 1.9E-05 47.1 7.3 60 18-77 154-226 (1036)
53 PLN02316 synthase/transferase 90.0 2.2 4.8E-05 44.3 9.8 60 14-73 325-399 (1036)
54 PF02903 Alpha-amylase_N: Alph 86.6 3.7 8E-05 31.2 7.0 57 15-71 20-88 (120)
55 PLN03244 alpha-amylase; Provis 85.2 0.85 1.8E-05 46.0 3.5 51 21-71 135-201 (872)
56 PRK14510 putative bifunctional 85.2 3.4 7.4E-05 43.6 8.0 53 20-74 25-84 (1221)
57 PLN02877 alpha-amylase/limit d 84.0 2.6 5.7E-05 43.4 6.4 63 19-83 223-302 (970)
58 COG3794 PetE Plastocyanin [Ene 73.9 11 0.00023 29.9 5.7 47 19-67 63-111 (128)
59 PRK10785 maltodextrin glucosid 62.6 44 0.00095 32.5 8.6 60 14-73 17-87 (598)
60 KOG0470 1,4-alpha-glucan branc 61.1 6.3 0.00014 39.4 2.5 38 20-58 115-157 (757)
61 PF11896 DUF3416: Domain of un 55.7 34 0.00074 28.6 5.7 39 38-77 55-99 (187)
62 PLN00115 pollen allergen group 53.3 51 0.0011 25.6 5.9 47 29-77 48-98 (118)
63 TIGR02657 amicyanin amicyanin. 51.2 41 0.00089 23.7 4.8 48 19-67 20-69 (83)
64 PF08308 PEGA: PEGA domain; I 50.3 44 0.00094 22.5 4.7 43 20-73 4-46 (71)
65 PF03370 CBM_21: Putative phos 50.2 66 0.0014 24.2 6.1 59 15-73 18-99 (113)
66 KOG0045 Cytosolic Ca2+-depende 49.0 17 0.00036 35.8 3.2 26 60-85 115-143 (612)
67 TIGR02375 pseudoazurin pseudoa 47.3 59 0.0013 25.0 5.4 49 17-67 22-71 (116)
68 TIGR03102 halo_cynanin halocya 45.3 60 0.0013 24.9 5.2 17 50-67 83-99 (115)
69 TIGR03503 conserved hypothetic 41.9 49 0.0011 30.7 4.9 25 49-73 169-195 (374)
70 TIGR03009 plancto_dom_2 Planct 40.5 44 0.00095 28.5 4.1 15 69-83 68-84 (210)
71 PF03422 CBM_6: Carbohydrate b 35.8 48 0.001 24.5 3.3 19 54-72 92-110 (125)
72 COG3397 Uncharacterized protei 35.6 2.3E+02 0.005 25.6 7.9 70 19-97 115-206 (308)
73 PF11797 DUF3324: Protein of u 35.6 99 0.0021 24.2 5.2 23 58-80 102-127 (140)
74 PLN00193 expansin-A; Provision 34.2 1.2E+02 0.0026 26.7 5.9 46 29-77 189-236 (256)
75 COG1477 ApbE Membrane-associat 32.4 97 0.0021 28.3 5.2 53 28-80 201-266 (337)
76 PF14347 DUF4399: Domain of un 32.4 72 0.0016 23.3 3.6 30 51-81 51-80 (87)
77 PF10634 Iron_transport: Fe2+ 32.1 1.6E+02 0.0034 24.0 5.8 28 44-71 88-117 (151)
78 PF14121 DUF4289: Domain of un 31.9 41 0.00089 32.8 2.9 41 152-192 494-535 (614)
79 PF13473 Cupredoxin_1: Cupredo 30.8 1.2E+02 0.0025 22.1 4.6 18 50-67 73-91 (104)
80 cd00503 Frataxin Frataxin is a 29.6 33 0.00071 26.0 1.4 19 60-79 65-83 (105)
81 PF07495 Y_Y_Y: Y_Y_Y domain; 29.5 50 0.0011 21.6 2.3 23 56-78 33-58 (66)
82 TIGR03422 mito_frataxin fratax 29.4 38 0.00082 25.3 1.7 18 61-79 66-83 (97)
83 KOG1263 Multicopper oxidases [ 29.1 35 0.00076 33.3 1.9 33 51-83 98-135 (563)
84 PLN00050 expansin A; Provision 28.6 1.6E+02 0.0034 25.8 5.7 45 30-77 182-228 (247)
85 PLN03023 Expansin-like B1; Pro 28.4 1.4E+02 0.0029 26.2 5.2 50 18-71 162-216 (247)
86 PF01491 Frataxin_Cyay: Fratax 28.0 1.1E+02 0.0024 23.0 4.2 26 54-80 61-87 (109)
87 PRK00446 cyaY frataxin-like pr 27.9 86 0.0019 23.7 3.5 24 52-79 59-82 (105)
88 smart00606 CBD_IV Cellulose Bi 25.5 93 0.002 23.2 3.4 18 55-72 101-118 (129)
89 COG5227 SMT3 Ubiquitin-like pr 25.2 71 0.0015 24.0 2.5 26 63-88 62-87 (103)
90 smart00230 CysPc Calpain-like 24.0 70 0.0015 28.5 2.8 25 59-83 98-125 (318)
91 PF00648 Peptidase_C2: Calpain 22.9 74 0.0016 27.6 2.7 22 61-82 87-111 (298)
92 PF07483 W_rich_C: Tryptophan- 22.7 2.8E+02 0.006 21.2 5.5 44 30-74 30-74 (109)
93 PF14645 Chibby: Chibby family 21.4 72 0.0016 24.6 2.0 18 57-75 43-60 (116)
94 cd00044 CysPc Calpains, domain 20.7 90 0.0019 27.5 2.8 25 59-83 106-133 (315)
95 TIGR01160 SUI1_MOF2 translatio 20.5 1E+02 0.0023 23.6 2.7 20 176-195 25-44 (110)
96 PF15655 Imm-NTF2: NTF2 fold i 20.3 84 0.0018 24.4 2.2 16 63-78 101-117 (130)
97 PRK10533 putative lipoprotein; 20.2 1.7E+02 0.0037 24.2 4.0 34 13-55 114-147 (171)
No 1
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=354.75 Aligned_cols=193 Identities=42% Similarity=0.715 Sum_probs=175.7
Q ss_pred cccCCCCCCceeEEEEEcCCCceEEEEecCCCCcccceeeecCCc---EEEEEEcCCceEEEEEEEcCeeecCCCCCeee
Q 028871 8 AAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKD---HSILLVLPSGVYHYKFIVDGDWRYIPDLPFVA 84 (202)
Q Consensus 8 ~~~~~~~~~~vpv~f~w~~~g~~V~V~GsF~nW~~~~~m~k~~~~---f~~~l~Lp~G~y~YKFiVDG~w~~dp~~p~~~ 84 (202)
.+.......+.||+|+|.+|++.|+|+|+|+||+.+++|.++++. |++++.|++|.|+|||+|||+|++|++.|+++
T Consensus 70 ~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~ 149 (289)
T KOG1616|consen 70 EDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAE 149 (289)
T ss_pred cccccccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccc
Confidence 344455677899999999999999999999999999999998765 99999999999999999999999999999999
Q ss_pred CCCCCeeeeEEeccCc--hhhccccccc----------cCCCCC-------CCCCccCCCCCCccCCC--CCCCChhccc
Q 028871 85 DELGGVCNLLDVHSCV--PEILDSVAEF----------EAPASP-------ESSYSQALPSEEDYAKE--PLTVPSQLHL 143 (202)
Q Consensus 85 d~~G~~nNvl~V~~~~--p~~~~~~~~~----------~~~~s~-------~~~y~~~~p~~~~~~~~--PP~lP~~L~~ 143 (202)
|..|+.||+++|.+.+ ++.++++.++ +.+..+ .++|+|++|+.+++.+. ||.|||||.+
T Consensus 150 d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~ 229 (289)
T KOG1616|consen 150 DSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHSESSEVPNLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQ 229 (289)
T ss_pred cccCCcccceEecCccccchhhhhhhhhccccccccccccCCCccccccccccccccccchhhcchhcccCCCCCcchhe
Confidence 9999999999999887 7777776665 444444 88999999998877765 9999999999
Q ss_pred ccCCCCCC---CCCCCCCCCeEeeceeEeecccccCceEEEeeeeEecceeEEEEEeeecCC
Q 028871 144 TLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR 202 (202)
Q Consensus 144 ~iLN~~~~---d~~~Lp~P~Hv~lNHLy~~s~~~~~~v~~~~~T~Ry~~KyvT~vlYkp~~~ 202 (202)
+|||+.+. |+..|++|+||+|||||+++| |++++++++||||++||||++||||+++
T Consensus 230 v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si--k~~~~~~~~~~r~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 230 VILNKDTQVSCDPALLPEPNHVALNHLYALSI--KDGVMVLSFTHRYKKKYVTTGLYKPLQL 289 (289)
T ss_pred eeccccccccccccccCCccchhhhhhhhhcc--CCCeeEecceecccccceeEEeeeeccC
Confidence 99999987 899999999999999999996 8999999999999999999999999975
No 2
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=4.9e-36 Score=226.24 Aligned_cols=84 Identities=51% Similarity=0.844 Sum_probs=63.5
Q ss_pred CCCCCCccCCCCC------------CccCCCCCCCChhcccccCCCCCC---CCCCCCCCCeEeeceeEeecccccCceE
Q 028871 115 SPESSYSQALPSE------------EDYAKEPLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVV 179 (202)
Q Consensus 115 s~~~~y~~~~p~~------------~~~~~~PP~lP~~L~~~iLN~~~~---d~~~Lp~P~Hv~lNHLy~~s~~~~~~v~ 179 (202)
+++++|++++|+. ++|+++||.||+||+++|||+... |++.||+|+||||||||+++| |+||+
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~i--k~~v~ 79 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSI--KDGVL 79 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEE--BTTEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEccc--CCCeE
Confidence 5788999999864 478999999999999999999965 799999999999999999997 89999
Q ss_pred EEeeeeEecceeEEEEEeeec
Q 028871 180 ALGLTHRFQSKYVTVVLYKPH 200 (202)
Q Consensus 180 ~~~~T~Ry~~KyvT~vlYkp~ 200 (202)
|+|+|||||+||||||||||+
T Consensus 80 al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 80 ALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEecceEEEEEEecCC
Confidence 999999999999999999996
No 3
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.95 E-value=1.7e-27 Score=172.35 Aligned_cols=79 Identities=53% Similarity=0.940 Sum_probs=75.4
Q ss_pred ceeEEEEEcCCCceEEEEecCCCCcccceeeecCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeeEE
Q 028871 17 GVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLD 95 (202)
Q Consensus 17 ~vpv~f~w~~~g~~V~V~GsF~nW~~~~~m~k~~~~f~~~l~Lp~G~y~YKFiVDG~w~~dp~~p~~~d~~G~~nNvl~ 95 (202)
.+||+|+|.++|++|+|+|+|++|+..++|.|+++.|++++.||+|.|+|||+|||+|.+||++|++.|++|+.||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 4799999999999999999999999878999987779999999999999999999999999999999999999999984
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.82 E-value=8.8e-20 Score=132.20 Aligned_cols=76 Identities=32% Similarity=0.687 Sum_probs=68.3
Q ss_pred eeEEEEEcC-CCceEEEEecCCCCcccceeeecC-CcEEEEEEcCCceEEEEEEEcCeee-cCCCCC-eeeCCCCCeeee
Q 028871 18 VPTIITWNY-GGNEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPSGVYHYKFIVDGDWR-YIPDLP-FVADELGGVCNL 93 (202)
Q Consensus 18 vpv~f~w~~-~g~~V~V~GsF~nW~~~~~m~k~~-~~f~~~l~Lp~G~y~YKFiVDG~w~-~dp~~p-~~~d~~G~~nNv 93 (202)
++++|+|.. ++++|+|+|+|++|+ ..+|.+.+ +.|++++.|++|.|+|||+|||.|. .||.++ ...|++|+.||+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 589999875 569999999999998 47999975 7899999999999999999999999 999998 478889999998
Q ss_pred E
Q 028871 94 L 94 (202)
Q Consensus 94 l 94 (202)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.35 E-value=7.1e-12 Score=91.55 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=62.0
Q ss_pred eEEEE-EcCCCceEEEEecCCCCcccceeeec-CCcEEEEE-EcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeeE
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSRRILHRS-GKDHSILL-VLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLL 94 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~~~m~k~-~~~f~~~l-~Lp~G~y~YKFiVDG~w~~dp~~p~~~d~~G~~nNvl 94 (202)
.++|+ |.+.+++|.|.|+|++|+. .+|.+. +|.|++++ .|.+|.|+|+|+|||.|+.||..+...-..+...|.+
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 46787 8899999999999998875 689886 46899988 4888999999999999999999997664455555543
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.91 E-value=6.3e-09 Score=73.03 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=57.7
Q ss_pred eEEEE-EcCCCceEEEEecCCCCcccceeeecC-CcEEEEEEcCC-ceEEEEEEEcCeeecCCCCCeeeCCCC
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPS-GVYHYKFIVDGDWRYIPDLPFVADELG 88 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~~~m~k~~-~~f~~~l~Lp~-G~y~YKFiVDG~w~~dp~~p~~~d~~G 88 (202)
.+.|+ |.+.+++|.|.+.|++|...++|.+.. +.|++.+.+.. |.|.|+|.|||.|..++.++...+...
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~ 77 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGS 77 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence 46788 557889999999999876678998864 68999999987 999999999999999988865544433
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.66 E-value=6.5e-08 Score=69.40 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=44.7
Q ss_pred eEEEE-EcCCCceEEEEecCCC-Cccc-ceeee--cCCcEEEEEE--cCCceEEEEEEEcCee
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDN-WTSR-RILHR--SGKDHSILLV--LPSGVYHYKFIVDGDW 74 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~n-W~~~-~~m~k--~~~~f~~~l~--Lp~G~y~YKFiVDG~w 74 (202)
-+.|+ |.+.|++|.|.+.|++ |... ++|.+ .++.|++++. +++|.+.|+|.|||..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 56777 9999999999999999 8754 68994 4679999998 8889888888888643
No 8
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.62 E-value=2.6e-07 Score=69.53 Aligned_cols=64 Identities=22% Similarity=0.481 Sum_probs=48.7
Q ss_pred EEEE-EcCCCceEEEEecCCCCcc-cceeeec-CCcEEEEEEc--------CCc-eEEEEEEE-cCee--ecCCCCCee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTS-RRILHRS-GKDHSILLVL--------PSG-VYHYKFIV-DGDW--RYIPDLPFV 83 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~-~~~m~k~-~~~f~~~l~L--------p~G-~y~YKFiV-DG~w--~~dp~~p~~ 83 (202)
++|+ |.+.|++|+|.|+||+|+. .++|.|. .|.|++.++. +.| .|+|++.. ||+| +.||-.-.+
T Consensus 7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~~ 85 (99)
T cd02854 7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKYV 85 (99)
T ss_pred EEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeEE
Confidence 5677 9999999999999999986 3689985 5689998764 455 46666666 7876 567766543
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.06 E-value=2e-05 Score=58.53 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=48.4
Q ss_pred EEEE-EcCCCceEEEEecCCCCc-----ccceeee-cCCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCCeee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWT-----SRRILHR-SGKDHSILLV-LPSGVYHYKFIVDGD-----WRYIPDLPFVA 84 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~-----~~~~m~k-~~~~f~~~l~-Lp~G~y~YKFiVDG~-----w~~dp~~p~~~ 84 (202)
+.|+ |.+.+++|.|.. |++|. ..++|.+ .++.|++.+. +.+|. .|+|.|+|. ...||-...+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence 5676 899999999988 88886 4578988 4678999886 55565 488888875 77888776544
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.88 E-value=0.00015 Score=53.57 Aligned_cols=65 Identities=20% Similarity=0.460 Sum_probs=43.9
Q ss_pred EEEE-EcCCCceEEEEecCCCCcc-cceeeec--CCcEEEEEE-cCCce-EEEEEEEc-Ce--eecCCCCCeee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTS-RRILHRS--GKDHSILLV-LPSGV-YHYKFIVD-GD--WRYIPDLPFVA 84 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~-~~~m~k~--~~~f~~~l~-Lp~G~-y~YKFiVD-G~--w~~dp~~p~~~ 84 (202)
++|+ |.+++++|.|.++|++|.. ..+|.+. .+.|.+.+. +++|. |+|++..+ |. .+.||....++
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~ 96 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE 96 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence 5676 8999999999999999964 3589874 568998775 56664 44444444 33 34455554333
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.82 E-value=7.6e-05 Score=55.10 Aligned_cols=53 Identities=28% Similarity=0.473 Sum_probs=43.6
Q ss_pred eeEEEEEc---CCCceEEEEecCC---CCcc--cceeeecC-----CcEEEEEEcCCc-eEEEEEEE
Q 028871 18 VPTIITWN---YGGNEVAVEGSWD---NWTS--RRILHRSG-----KDHSILLVLPSG-VYHYKFIV 70 (202)
Q Consensus 18 vpv~f~w~---~~g~~V~V~GsF~---nW~~--~~~m~k~~-----~~f~~~l~Lp~G-~y~YKFiV 70 (202)
|.|+|+-. ..|+.|+|+|+.. +|+. .++|...+ ..|++.+.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 67788864 4789999999996 8997 47888752 589999999988 59999999
No 12
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.81 E-value=0.00015 Score=53.06 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=41.1
Q ss_pred eeEEEEEc---CCCceEEEEec---CCCCccc--ceeeec-CCcEEEEEEcCCc-eEEEEEEE
Q 028871 18 VPTIITWN---YGGNEVAVEGS---WDNWTSR--RILHRS-GKDHSILLVLPSG-VYHYKFIV 70 (202)
Q Consensus 18 vpv~f~w~---~~g~~V~V~Gs---F~nW~~~--~~m~k~-~~~f~~~l~Lp~G-~y~YKFiV 70 (202)
|+++|+-. ..|+.|+|+|+ +.+|+.. ++|... ++.|++.+.||.| .++|||++
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 34555543 46899999995 7899864 588765 4589999999987 59999997
No 13
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.73 E-value=0.00034 Score=51.64 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=48.6
Q ss_pred eeEEEEEc---CCCceEEEEecC---CCCcccceeeecCCcEEEEEEcCCc-eEEEEEEE---cC--eeecCCCC
Q 028871 18 VPTIITWN---YGGNEVAVEGSW---DNWTSRRILHRSGKDHSILLVLPSG-VYHYKFIV---DG--DWRYIPDL 80 (202)
Q Consensus 18 vpv~f~w~---~~g~~V~V~GsF---~nW~~~~~m~k~~~~f~~~l~Lp~G-~y~YKFiV---DG--~w~~dp~~ 80 (202)
+.++|+-+ .-|+.++|+|+- .+|++..+|.-..+.|++.+.|+.| ..+|||++ || .|...++.
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE~g~Nr 76 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVIVKRDGSVIWEGGNNR 76 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEEeCCCE
Confidence 45666654 468999999988 5899877888777789999999987 59999999 33 46555443
No 14
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.71 E-value=0.00021 Score=53.46 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=40.4
Q ss_pred EEEE-EcCCCceEEEEecCCCCc--ccceeeec-CCcEEEEEE-cCCceEEEEEEEcCe
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWT--SRRILHRS-GKDHSILLV-LPSGVYHYKFIVDGD 73 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~--~~~~m~k~-~~~f~~~l~-Lp~G~y~YKFiVDG~ 73 (202)
+.|+ |.+.+++|.|.. |++|. ..++|.+. ++.|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 5675 899999999998 66554 34689876 578998874 66666 799999994
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00013 Score=70.68 Aligned_cols=63 Identities=16% Similarity=0.358 Sum_probs=49.2
Q ss_pred eeEEEE-EcCCCceEEEEecCCCCccc-ceeee--cCCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCC
Q 028871 18 VPTIIT-WNYGGNEVAVEGSWDNWTSR-RILHR--SGKDHSILLV-LPSGVYHYKFIVDGD-----WRYIPDLP 81 (202)
Q Consensus 18 vpv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k--~~~~f~~~l~-Lp~G~y~YKFiVDG~-----w~~dp~~p 81 (202)
-.|.|+ |.+.++.|.|.|+||+|... .+|.. ..+.|++++. +++| ++|||.+++. ++.||-.-
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~ 108 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYAR 108 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhh
Confidence 356777 99999999999999999984 23332 2368999998 9999 8999999753 36776554
No 16
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.60 E-value=0.00019 Score=71.00 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=46.4
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeeec-CCcEEEEEE-------cCCceEEEEEEEc---Ce--eecCCCCC
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLV-------LPSGVYHYKFIVD---GD--WRYIPDLP 81 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k~-~~~f~~~l~-------Lp~G~y~YKFiVD---G~--w~~dp~~p 81 (202)
-++|+ |.+.|++|+|.|+||+|+.. .+|.|. .|.|++.+. ++.|. .|||.|. |. .+.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence 46777 99999999999999999864 589985 468999876 34453 6777774 54 46676544
No 17
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.52 E-value=0.00058 Score=52.65 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=39.1
Q ss_pred CCCceEEEEec---CCCCcc--cceeeec--C-CcEEEEEEcCCc-eEEEEEEEcC
Q 028871 26 YGGNEVAVEGS---WDNWTS--RRILHRS--G-KDHSILLVLPSG-VYHYKFIVDG 72 (202)
Q Consensus 26 ~~g~~V~V~Gs---F~nW~~--~~~m~k~--~-~~f~~~l~Lp~G-~y~YKFiVDG 72 (202)
..|+.|+|+|+ +.+|+. ..+|.+. . +.|++.+.||.+ .++|||++..
T Consensus 13 ~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~ 68 (120)
T cd05814 13 APGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV 68 (120)
T ss_pred CCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence 36899999999 889985 3588875 3 579999999988 6999999953
No 18
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.51 E-value=0.0014 Score=49.33 Aligned_cols=64 Identities=27% Similarity=0.473 Sum_probs=47.9
Q ss_pred ceeEEEEEc-----CCCceEEEEecCC---CCcccc-----eeeec-CCcEEEEEEcCCce-EEEEEEE---cC--eeec
Q 028871 17 GVPTIITWN-----YGGNEVAVEGSWD---NWTSRR-----ILHRS-GKDHSILLVLPSGV-YHYKFIV---DG--DWRY 76 (202)
Q Consensus 17 ~vpv~f~w~-----~~g~~V~V~GsF~---nW~~~~-----~m~k~-~~~f~~~l~Lp~G~-y~YKFiV---DG--~w~~ 76 (202)
-|||+|+-+ ..|++|+|+|+-. +|+... +|... ...|.+.+.||.|. .+|||++ || .|..
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~WE~ 81 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLKAPADGTGTWEG 81 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEEEe
Confidence 389999986 2479999999874 899732 66543 35799999999985 9999999 34 3655
Q ss_pred CCCC
Q 028871 77 IPDL 80 (202)
Q Consensus 77 dp~~ 80 (202)
.++.
T Consensus 82 g~Nr 85 (103)
T cd05820 82 GSNH 85 (103)
T ss_pred CCCE
Confidence 5443
No 19
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.51 E-value=0.00083 Score=50.09 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=41.8
Q ss_pred ceeEEEEEc----CCCceEEEEe---cCCCCcccc-eeee---c-CCcEEEEEEcCCce-EEEEEEE
Q 028871 17 GVPTIITWN----YGGNEVAVEG---SWDNWTSRR-ILHR---S-GKDHSILLVLPSGV-YHYKFIV 70 (202)
Q Consensus 17 ~vpv~f~w~----~~g~~V~V~G---sF~nW~~~~-~m~k---~-~~~f~~~l~Lp~G~-y~YKFiV 70 (202)
-|||+|+-. ..|++|+|+| ++.+|+... +|.. . ...|++.+.||+|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 478999974 3589999999 567998642 2332 1 35899999999985 9999999
No 20
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.48 E-value=0.00029 Score=69.52 Aligned_cols=63 Identities=24% Similarity=0.445 Sum_probs=48.3
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeee-cCCcEEEEEE-cCCceEEEEEEE---cCeee--cCCCCCe
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHR-SGKDHSILLV-LPSGVYHYKFIV---DGDWR--YIPDLPF 82 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k-~~~~f~~~l~-Lp~G~y~YKFiV---DG~w~--~dp~~p~ 82 (202)
-|.|+ |.+.|++|.|.|+||+|..+ ++|.+ .++.|++.+. +.+|. .|||.| ||.+. .||-...
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~~ 210 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVARQ 210 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcceE
Confidence 46787 99999999999999999864 58876 4678999874 67774 577777 77654 6776654
No 21
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.45 E-value=0.00042 Score=67.27 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=47.9
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeeec-CCcEEEEEE-cCCc-eEEEEEEE-cCee--ecCCCCCee
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLV-LPSG-VYHYKFIV-DGDW--RYIPDLPFV 83 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k~-~~~f~~~l~-Lp~G-~y~YKFiV-DG~w--~~dp~~p~~ 83 (202)
-|+|+ |.+.|++|+|.|+|++|... .+|.+. ++.|.+.+. +.+| .|+|++.+ ||.| +.||-....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence 46787 88999999999999999864 589885 578999887 4455 57776654 4665 456655443
No 22
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.36 E-value=0.00063 Score=52.02 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=42.3
Q ss_pred EEEE-EcCCCceEEEEecCCCCc---c--cceeeec----CCcEEEEEE-cCCceEEEEEEEcCeeec
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWT---S--RRILHRS----GKDHSILLV-LPSGVYHYKFIVDGDWRY 76 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~---~--~~~m~k~----~~~f~~~l~-Lp~G~y~YKFiVDG~w~~ 76 (202)
+.|+ |.+.|++|.|.. |++|. . +++|.+. ++.|.+.+. +.+|. .|+|.|||.|.-
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p 74 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEP 74 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCC
Confidence 5675 999999999998 88876 2 3577654 478998775 67786 799999997543
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.34 E-value=0.00047 Score=71.41 Aligned_cols=61 Identities=23% Similarity=0.537 Sum_probs=47.2
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeee--cCCcEEEEEE-cCCceEEEEEEEc---Cee--ecCCCC
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHR--SGKDHSILLV-LPSGVYHYKFIVD---GDW--RYIPDL 80 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k--~~~~f~~~l~-Lp~G~y~YKFiVD---G~w--~~dp~~ 80 (202)
-|.|+ |.+.+++|+|.|+||+|..+ .+|.+ ..+.|++.+. +.+|. .|||.|+ |.| +.||-.
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 46777 99999999999999999864 58887 3578999875 78886 6888885 444 456644
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.26 E-value=0.00065 Score=66.26 Aligned_cols=64 Identities=23% Similarity=0.405 Sum_probs=48.2
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeeec-CCcEEEEEE-cCCceEEEEEEEcC---ee--ecCCCCCee
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLV-LPSGVYHYKFIVDG---DW--RYIPDLPFV 83 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k~-~~~f~~~l~-Lp~G~y~YKFiVDG---~w--~~dp~~p~~ 83 (202)
-+.|+ |.+.|++|+|.|+||+|+.. .+|.+. .+.|++.+. +.+| ..|||.|+| .+ +.||-...+
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~ 111 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF 111 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence 36787 99999999999999999864 589875 468998886 4555 468888865 33 667765543
No 25
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=97.19 E-value=0.0046 Score=45.98 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=36.7
Q ss_pred CCCceEEEEecC---CCCcc--cceeeecC-CcEEEEEEcCCc--eEEEEEEE
Q 028871 26 YGGNEVAVEGSW---DNWTS--RRILHRSG-KDHSILLVLPSG--VYHYKFIV 70 (202)
Q Consensus 26 ~~g~~V~V~GsF---~nW~~--~~~m~k~~-~~f~~~l~Lp~G--~y~YKFiV 70 (202)
..|+.|+|+|+. .+|+. .++|.... ..|++.+.+|++ ..+|||++
T Consensus 12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 12 PKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 368999999986 58995 45888754 479999999875 59999998
No 26
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.19 E-value=0.0014 Score=48.18 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=41.5
Q ss_pred eeEEEEEc----CCCceEEEEecC---CCCcccceeeecC-CcEEEEEEcCCce-EEEEEEE
Q 028871 18 VPTIITWN----YGGNEVAVEGSW---DNWTSRRILHRSG-KDHSILLVLPSGV-YHYKFIV 70 (202)
Q Consensus 18 vpv~f~w~----~~g~~V~V~GsF---~nW~~~~~m~k~~-~~f~~~l~Lp~G~-y~YKFiV 70 (202)
|+++|+-. .+++.++|+|+- -+|+...+|...+ ..|++.+.||.+. .+|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 35666643 356889999987 4798878997654 5799999999886 9999998
No 27
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.17 E-value=0.0012 Score=65.07 Aligned_cols=63 Identities=17% Similarity=0.443 Sum_probs=46.6
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeeec--CCcEEEEEE-cCCc-eEEEEEEEc-Cee--ecCCCCC
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHRS--GKDHSILLV-LPSG-VYHYKFIVD-GDW--RYIPDLP 81 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k~--~~~f~~~l~-Lp~G-~y~YKFiVD-G~w--~~dp~~p 81 (202)
-|+|+ |.+.|++|.|.|+|++|... .+|.+. ++.|.+.+. +++| .|+|++..+ |.| ..||-.-
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~ 203 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAF 203 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceE
Confidence 46788 88999999999999999864 589885 468998775 6667 577766665 454 4555443
No 28
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.92 E-value=0.0023 Score=63.22 Aligned_cols=61 Identities=16% Similarity=0.005 Sum_probs=43.6
Q ss_pred eEEEE-EcCCCceEEEEecCCCCcccceeeec--CCcEEEEEEcCCce-EEEEEEEcCe--eecCCCC
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSRRILHRS--GKDHSILLVLPSGV-YHYKFIVDGD--WRYIPDL 80 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~~~m~k~--~~~f~~~l~Lp~G~-y~YKFiVDG~--w~~dp~~ 80 (202)
=+.|+ |.+.|++|+|.|+||+ ....+|.+. .+.|++.+++..|. |+|...-||+ .+.||..
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence 45666 9999999999999997 445689974 57899988877774 4444322785 4455543
No 29
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.92 E-value=0.012 Score=44.03 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=43.8
Q ss_pred CCceeEEEEEc---CCCceEEEEecCC---CCccc--ceeeec-----CCcEEEEEEcCCce-EEEEEEE
Q 028871 15 EKGVPTIITWN---YGGNEVAVEGSWD---NWTSR--RILHRS-----GKDHSILLVLPSGV-YHYKFIV 70 (202)
Q Consensus 15 ~~~vpv~f~w~---~~g~~V~V~GsF~---nW~~~--~~m~k~-----~~~f~~~l~Lp~G~-y~YKFiV 70 (202)
+..+.+.|+-. ..|+.|+|+|+-. +|+.. ++|... +..|++.+.||.|. .+|||+|
T Consensus 4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 45677888764 4689999999874 79863 578653 35799999999885 9999996
No 30
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.89 E-value=0.0047 Score=46.08 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=37.0
Q ss_pred CCCceEEEEecC---CCCccc--ceeeecC-CcEEEEEEcCCc-eEEEEEEE
Q 028871 26 YGGNEVAVEGSW---DNWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 70 (202)
Q Consensus 26 ~~g~~V~V~GsF---~nW~~~--~~m~k~~-~~f~~~l~Lp~G-~y~YKFiV 70 (202)
..|+.|+|+|+- .+|+.. ++|...+ ..|++.+.||.| .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 468999999995 689964 5787654 479999999987 49999998
No 31
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.89 E-value=0.0038 Score=59.74 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=48.0
Q ss_pred EEEE-EcCCCceEEEEecCCCCcccceeeecC-CcEEEEEE-cCCceEEEEEEEcC-eeecCCCCCeee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTSRRILHRSG-KDHSILLV-LPSGVYHYKFIVDG-DWRYIPDLPFVA 84 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~~~~m~k~~-~~f~~~l~-Lp~G~y~YKFiVDG-~w~~dp~~p~~~ 84 (202)
|+|+ |.+.|++|.|.+. ++ .++|.+.+ +.|++++. +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4676 9999999999973 33 47999864 68999886 6778 789999999 788899887643
No 32
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.84 E-value=0.012 Score=43.83 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.0
Q ss_pred ceeEEEEEc----CCCceEEEEecCC---CCcccc--eee-e----cCCcEEEEEEcCCce-EEEEEEE
Q 028871 17 GVPTIITWN----YGGNEVAVEGSWD---NWTSRR--ILH-R----SGKDHSILLVLPSGV-YHYKFIV 70 (202)
Q Consensus 17 ~vpv~f~w~----~~g~~V~V~GsF~---nW~~~~--~m~-k----~~~~f~~~l~Lp~G~-y~YKFiV 70 (202)
-|+++|+-. ..|++|+|+|+-. +|+... .|. . ....|++.+.||.|. .+|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 478888864 3589999999874 899643 232 2 234799999999985 9999998
No 33
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.74 E-value=0.0055 Score=44.14 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=44.1
Q ss_pred EEEE-EcCCCceEEEEecCCCCcccceeeec-CCcEEEEEEcCCceEEEEEEEc-CeeecCCCCCee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIVD-GDWRYIPDLPFV 83 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~~~~m~k~-~~~f~~~l~Lp~G~y~YKFiVD-G~w~~dp~~p~~ 83 (202)
+.|+ |.+.+++|.|.... |. .++|.+. ++.|++.+..-+|. .|+|.|+ |..+.||.....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 5677 99999999999743 54 4789875 56899987633665 5777777 577888877653
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.74 E-value=0.0041 Score=60.33 Aligned_cols=63 Identities=22% Similarity=0.457 Sum_probs=47.7
Q ss_pred eEEEE-EcCCCceEEEEecCCCCccc-ceeeec--CCcEEEEEE-cCCceEEEEEEEc---Ce--eecCCCCCe
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWTSR-RILHRS--GKDHSILLV-LPSGVYHYKFIVD---GD--WRYIPDLPF 82 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~~~-~~m~k~--~~~f~~~l~-Lp~G~y~YKFiVD---G~--w~~dp~~p~ 82 (202)
-++|+ |.+.|++|.|.|+|++|... .+|.+. ++.|++.+. +.+|. .|||.|+ |. .+.||-.-.
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~ 101 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFY 101 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEee
Confidence 46787 99999999999999999764 488875 478998876 45565 5888884 54 467776653
No 35
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.73 E-value=0.0075 Score=43.80 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=37.5
Q ss_pred CCCceEEEEecCC---CCcc--cceeeecC--CcEEEEEEcCC--c-eEEEEEEE
Q 028871 26 YGGNEVAVEGSWD---NWTS--RRILHRSG--KDHSILLVLPS--G-VYHYKFIV 70 (202)
Q Consensus 26 ~~g~~V~V~GsF~---nW~~--~~~m~k~~--~~f~~~l~Lp~--G-~y~YKFiV 70 (202)
..|+.++|+|+.. +|+. .++|...+ +.|++.+.|+. | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 5789999999984 8985 46888654 68999999998 6 59999998
No 36
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.59 E-value=0.017 Score=43.00 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=40.4
Q ss_pred eeEEEEEc----CCCceEEEEecCC---CCccc--ceeeecC-CcEEEEEEcCCce-EEEEEEE
Q 028871 18 VPTIITWN----YGGNEVAVEGSWD---NWTSR--RILHRSG-KDHSILLVLPSGV-YHYKFIV 70 (202)
Q Consensus 18 vpv~f~w~----~~g~~V~V~GsF~---nW~~~--~~m~k~~-~~f~~~l~Lp~G~-y~YKFiV 70 (202)
|++.|.-. ..|+.|+|+|+.. +|+.. ++|.... ..|++.+.||.|. .+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 45666633 3689999999875 89963 5676543 4699999999984 9999988
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.96 E-value=0.08 Score=39.24 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=36.8
Q ss_pred EEEc-CCCceEEEEecC---CCCccc--ceeeec----CCcEEEEEEcCCce-EEEEEEE
Q 028871 22 ITWN-YGGNEVAVEGSW---DNWTSR--RILHRS----GKDHSILLVLPSGV-YHYKFIV 70 (202)
Q Consensus 22 f~w~-~~g~~V~V~GsF---~nW~~~--~~m~k~----~~~f~~~l~Lp~G~-y~YKFiV 70 (202)
+.+. .-|+.++|+|+- .+|+.. ++|... +..|++.+.++++. .+|||+|
T Consensus 6 i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 6 LPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 3344 468999999987 479754 578542 22699999998874 9999999
No 38
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.81 E-value=0.053 Score=39.67 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=36.3
Q ss_pred eEEEEEcC------CCceEEEEecCCCCccc--ceeeecC-----CcEEEEEEcCCceEEEEEEE-cC--ee
Q 028871 19 PTIITWNY------GGNEVAVEGSWDNWTSR--RILHRSG-----KDHSILLVLPSGVYHYKFIV-DG--DW 74 (202)
Q Consensus 19 pv~f~w~~------~g~~V~V~GsF~nW~~~--~~m~k~~-----~~f~~~l~Lp~G~y~YKFiV-DG--~w 74 (202)
++++.|++ ++.+|++.+.|++|... +.|.+.. +-|+++|.+|..-++..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 45666642 47899999999999864 5677753 67899999999999999988 55 55
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.47 E-value=0.042 Score=53.24 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=44.9
Q ss_pred EEEE-EcCCCceEEEEecCCCCcc-----cceeeec-CCcEEEEEE-cCCce-EEEEEEEcCe--eecCCCCCe
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTS-----RRILHRS-GKDHSILLV-LPSGV-YHYKFIVDGD--WRYIPDLPF 82 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~-----~~~m~k~-~~~f~~~l~-Lp~G~-y~YKFiVDG~--w~~dp~~p~ 82 (202)
+.|+ |.+.+++|.|.+ |++|.. .++|.+. ++.|++.+. +..|. |.|+...+|. ++.||-...
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence 6787 999999999998 888753 4688875 578999886 45564 4444444564 588887754
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.22 E-value=0.11 Score=40.10 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=37.6
Q ss_pred EEcCCCceEEEEecC---CCCccc--ceeeec-------C-CcEEEEEEcCCc----eEEEEEEE
Q 028871 23 TWNYGGNEVAVEGSW---DNWTSR--RILHRS-------G-KDHSILLVLPSG----VYHYKFIV 70 (202)
Q Consensus 23 ~w~~~g~~V~V~GsF---~nW~~~--~~m~k~-------~-~~f~~~l~Lp~G----~y~YKFiV 70 (202)
+..+.|++|+|+|+- -+|+.. ++|... . ..|.+.++|+.| ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 456789999999976 589864 466643 2 359999999986 69999998
No 41
>PLN02960 alpha-amylase
Probab=94.64 E-value=0.029 Score=56.66 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=37.6
Q ss_pred EEEcCCCceEEEEecCCCCcccc-eee-----ecC-CcEEEEEE--cCCce-------EEEEEEEc
Q 028871 22 ITWNYGGNEVAVEGSWDNWTSRR-ILH-----RSG-KDHSILLV--LPSGV-------YHYKFIVD 71 (202)
Q Consensus 22 f~w~~~g~~V~V~GsF~nW~~~~-~m~-----k~~-~~f~~~l~--Lp~G~-------y~YKFiVD 71 (202)
..|.+||..+.|.|+||||+... .|. |++ +.|.++++ |..|. -+|.|..|
T Consensus 133 ~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 133 MEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 45999999999999999999864 555 332 57888875 77762 46777765
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.36 E-value=0.53 Score=36.58 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=53.5
Q ss_pred eEEEEEc----CCCceEEEEecCCCCccc-----ceeeecCC--cEEEEEEcCCc-eEEEEEEEcCe-------------
Q 028871 19 PTIITWN----YGGNEVAVEGSWDNWTSR-----RILHRSGK--DHSILLVLPSG-VYHYKFIVDGD------------- 73 (202)
Q Consensus 19 pv~f~w~----~~g~~V~V~GsF~nW~~~-----~~m~k~~~--~f~~~l~Lp~G-~y~YKFiVDG~------------- 73 (202)
-|+|-|. +....|.|-|+.++...+ ..|+|-++ .|..++.|+.+ +=.|+|+.+-.
T Consensus 3 ~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~~ 82 (122)
T PF11806_consen 3 LVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRAI 82 (122)
T ss_dssp EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHHH
Confidence 5899999 445678999999988543 47888654 79999999987 58899997533
Q ss_pred ---eecCCCCCee-eCC---CCCeeeeEEeccC
Q 028871 74 ---WRYIPDLPFV-ADE---LGGVCNLLDVHSC 99 (202)
Q Consensus 74 ---w~~dp~~p~~-~d~---~G~~nNvl~V~~~ 99 (202)
-+.||-+|.. ... .|...++++.++.
T Consensus 83 l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 83 LAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp GGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3678888854 333 4788999988653
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=93.97 E-value=0.43 Score=48.69 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCCCceeEEEEEc----CCCceEEEEecCC---CCccc--ceeeec-CCcEEEEEEcCCc--eEEEEEEE---cC--eee
Q 028871 13 PLEKGVPTIITWN----YGGNEVAVEGSWD---NWTSR--RILHRS-GKDHSILLVLPSG--VYHYKFIV---DG--DWR 75 (202)
Q Consensus 13 ~~~~~vpv~f~w~----~~g~~V~V~GsF~---nW~~~--~~m~k~-~~~f~~~l~Lp~G--~y~YKFiV---DG--~w~ 75 (202)
.....++++|+-. ..|++|+|+|+-. +|+.. .+|... ...|.+.+.++.+ ..+|||++ +| .|.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE 227 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE 227 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence 4456788888864 3589999999874 89864 467654 4589999999988 49999998 34 477
Q ss_pred cCCCCCeeeC
Q 028871 76 YIPDLPFVAD 85 (202)
Q Consensus 76 ~dp~~p~~~d 85 (202)
..++.-....
T Consensus 228 ~g~NR~~~~p 237 (909)
T PLN02950 228 LGVNRELSLD 237 (909)
T ss_pred eCCCceeecC
Confidence 6666554444
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=93.19 E-value=0.7 Score=47.20 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=47.1
Q ss_pred CCCceeEEEEEc---CCCceEEEEecC---CCCccc--ceeeec----CCcEEEEEEcCCc-eEEEEEEE-c--Ce---e
Q 028871 14 LEKGVPTIITWN---YGGNEVAVEGSW---DNWTSR--RILHRS----GKDHSILLVLPSG-VYHYKFIV-D--GD---W 74 (202)
Q Consensus 14 ~~~~vpv~f~w~---~~g~~V~V~GsF---~nW~~~--~~m~k~----~~~f~~~l~Lp~G-~y~YKFiV-D--G~---w 74 (202)
....+.++|+-. .-|++|+|+|+- .+|+.. ++|... +..|++.+.|+.| ..+|||++ | |. |
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W 84 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW 84 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence 345677777754 358999999988 478854 578543 2369999999987 49999995 3 42 6
Q ss_pred ecCCC
Q 028871 75 RYIPD 79 (202)
Q Consensus 75 ~~dp~ 79 (202)
.-.++
T Consensus 85 E~g~N 89 (909)
T PLN02950 85 EAGKK 89 (909)
T ss_pred ecCCC
Confidence 65553
No 45
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=93.11 E-value=0.45 Score=49.49 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=46.6
Q ss_pred EEEE-EcCCCceEEEEe-cCCCCcc---cceeeec-CCcEEEEEE-cCCc-----eEEEEEEEcC----eeecCCCCCee
Q 028871 20 TIIT-WNYGGNEVAVEG-SWDNWTS---RRILHRS-GKDHSILLV-LPSG-----VYHYKFIVDG----DWRYIPDLPFV 83 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~G-sF~nW~~---~~~m~k~-~~~f~~~l~-Lp~G-----~y~YKFiVDG----~w~~dp~~p~~ 83 (202)
+.|+ |++.|++|.|.+ ++++|.. .++|.+. ++.|++.+. +.+| -+.|+|.|++ ....||....+
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~al 408 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAKSL 408 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhheEE
Confidence 5677 999999999997 4566653 5789875 578999886 4433 3678888876 56778876543
No 46
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.82 E-value=0.32 Score=48.12 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=39.2
Q ss_pred EEEE-EcCCCceEEEEecCCCCcc----cceeeec-CCcEEEEEE-cCCceEEEEEEEcCee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTS----RRILHRS-GKDHSILLV-LPSGVYHYKFIVDGDW 74 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~----~~~m~k~-~~~f~~~l~-Lp~G~y~YKFiVDG~w 74 (202)
|.|+ |++.|++|.|. -|+++.. .++|.+. ++.|.+.+. +.+|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 5677 88999999986 4554432 3578764 569999885 67777 5999999843
No 47
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=91.86 E-value=0.77 Score=42.59 Aligned_cols=89 Identities=17% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCCCceeEEEEEcC-CC-------ceEEEEe--cCC--CCcccceeeecCC--cEEEEEEcCCc-eEEEEEEEc---C--
Q 028871 13 PLEKGVPTIITWNY-GG-------NEVAVEG--SWD--NWTSRRILHRSGK--DHSILLVLPSG-VYHYKFIVD---G-- 72 (202)
Q Consensus 13 ~~~~~vpv~f~w~~-~g-------~~V~V~G--sF~--nW~~~~~m~k~~~--~f~~~l~Lp~G-~y~YKFiVD---G-- 72 (202)
..+...-|+|-|++ .| +.|+|.+ ..| .+.....|+|-++ .|..++.||.. +-.|+|+++ .
T Consensus 34 ~~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 34 LDDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEeccccccc
Confidence 34566899999995 23 2588743 222 2444457999654 69999999987 589999993 1
Q ss_pred -----------------------eeecCCCCCee-eCCCCCeeeeEEeccCch
Q 028871 73 -----------------------DWRYIPDLPFV-ADELGGVCNLLDVHSCVP 101 (202)
Q Consensus 73 -----------------------~w~~dp~~p~~-~d~~G~~nNvl~V~~~~p 101 (202)
.-+.||.++.. .+..|+..|+|++++..+
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~ 166 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPL 166 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCC
Confidence 11478988864 345566679999986543
No 48
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=91.68 E-value=0.77 Score=33.15 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCCceeEEEEEcCCC---ceEEEEecC-CCCcccceeeec-CCcEEEEEEcCCceEEEEEEE-c-CeeecC
Q 028871 14 LEKGVPTIITWNYGG---NEVAVEGSW-DNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIV-D-GDWRYI 77 (202)
Q Consensus 14 ~~~~vpv~f~w~~~g---~~V~V~GsF-~nW~~~~~m~k~-~~~f~~~l~Lp~G~y~YKFiV-D-G~w~~d 77 (202)
.+.-.-+.+.+.+|+ ..|.|.++= .+| .+|.|+ +..|.+.-.++.|-+.+|+-. | |++...
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS----EE-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 355677788887654 478899544 458 589998 558998778888899999988 7 888764
No 49
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=91.35 E-value=1.9 Score=31.76 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=36.5
Q ss_pred CceeEEEEEc-CCCceEEEEecCCC--Cc-ccceeeecCC-----cEEEEEEcCCceEEEEEEE
Q 028871 16 KGVPTIITWN-YGGNEVAVEGSWDN--WT-SRRILHRSGK-----DHSILLVLPSGVYHYKFIV 70 (202)
Q Consensus 16 ~~vpv~f~w~-~~g~~V~V~GsF~n--W~-~~~~m~k~~~-----~f~~~l~Lp~G~y~YKFiV 70 (202)
..+.+.|+-. ...++|.|.-.-+. +. ..++|.+.+. .|++.+.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 4444444433 34678888654432 22 3578987532 4888898888999999999
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.99 E-value=0.78 Score=45.24 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=39.3
Q ss_pred EEEE-EcCCCceEEEEecCCCCc--ccceeeec-CCcEEEEEE-cCCceEEEEEEEcCe
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWT--SRRILHRS-GKDHSILLV-LPSGVYHYKFIVDGD 73 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~--~~~~m~k~-~~~f~~~l~-Lp~G~y~YKFiVDG~ 73 (202)
|.|+ |++.|++|.|.. |+++. ..++|.+. ++.|++.+. +.+|. .|+|.|+|.
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~ 77 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGP 77 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEccc
Confidence 5776 899999999997 76542 34688765 679999875 56665 599999884
No 51
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=90.80 E-value=0.7 Score=47.15 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=44.5
Q ss_pred eEEEE-EcCCCceEEEEecCCCCc--ccceeeec--CCcEEEEEE-cCCceEEEEEEEc------Ce----eecCCCCCe
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWT--SRRILHRS--GKDHSILLV-LPSGVYHYKFIVD------GD----WRYIPDLPF 82 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~--~~~~m~k~--~~~f~~~l~-Lp~G~y~YKFiVD------G~----w~~dp~~p~ 82 (202)
-++|+ |.+.+++|.|.+-.++|. ..++|.+. .+.|++.+. ...|. .|+|.|+ |+ ...||..-.
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 45676 999999999996665553 24689875 579999885 44565 3666664 53 478887764
Q ss_pred e
Q 028871 83 V 83 (202)
Q Consensus 83 ~ 83 (202)
.
T Consensus 215 l 215 (898)
T TIGR02103 215 L 215 (898)
T ss_pred E
Confidence 4
No 52
>PLN02316 synthase/transferase
Probab=90.25 E-value=0.88 Score=47.08 Aligned_cols=60 Identities=22% Similarity=0.409 Sum_probs=45.1
Q ss_pred eeEEEEEcC------CCceEEEEecCCCCccc---ceeeec--CC-cEEEEEEcCCceEEEEEEE-cCeeecC
Q 028871 18 VPTIITWNY------GGNEVAVEGSWDNWTSR---RILHRS--GK-DHSILLVLPSGVYHYKFIV-DGDWRYI 77 (202)
Q Consensus 18 vpv~f~w~~------~g~~V~V~GsF~nW~~~---~~m~k~--~~-~f~~~l~Lp~G~y~YKFiV-DG~w~~d 77 (202)
-++.+.|+. +..+|.|.|.||+|+-. ..|.|+ ++ -|++.+.+|++-|..-|+. ||.-.+|
T Consensus 154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yD 226 (1036)
T PLN02316 154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYD 226 (1036)
T ss_pred CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccc
Confidence 356666652 35789999999999975 367776 34 4788999999999999998 7743333
No 53
>PLN02316 synthase/transferase
Probab=90.02 E-value=2.2 Score=44.27 Aligned_cols=60 Identities=22% Similarity=0.422 Sum_probs=44.6
Q ss_pred CCCceeEEEEEcC------CCceEEEEecCCCCcccc----eeeec----CCcEEEEEEcCCceEEEEEEE-cCe
Q 028871 14 LEKGVPTIITWNY------GGNEVAVEGSWDNWTSRR----ILHRS----GKDHSILLVLPSGVYHYKFIV-DGD 73 (202)
Q Consensus 14 ~~~~vpv~f~w~~------~g~~V~V~GsF~nW~~~~----~m~k~----~~~f~~~l~Lp~G~y~YKFiV-DG~ 73 (202)
...+-++++-|+. ++.+|+|.|.||+|.... .|.++ ++-|.+++.+|..-|..-|+. ||.
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 3445678888873 468999999999999632 23332 335788999999999999987 563
No 54
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=86.56 E-value=3.7 Score=31.15 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=38.6
Q ss_pred CCceeEEEEEc-CCCceEEEE-ecCCCC----c-ccceeeecC-----CcEEEEEEcCCceEEEEEEEc
Q 028871 15 EKGVPTIITWN-YGGNEVAVE-GSWDNW----T-SRRILHRSG-----KDHSILLVLPSGVYHYKFIVD 71 (202)
Q Consensus 15 ~~~vpv~f~w~-~~g~~V~V~-GsF~nW----~-~~~~m~k~~-----~~f~~~l~Lp~G~y~YKFiVD 71 (202)
...+-+.|+=. ...++|.|. |+-.+| . ...+|++.. +.|++++.++..+.+|.|.|-
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~ 88 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELE 88 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEE
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEE
Confidence 44566666654 467899885 777666 2 235888742 258999999999999999884
No 55
>PLN03244 alpha-amylase; Provisional
Probab=85.17 E-value=0.85 Score=46.03 Aligned_cols=51 Identities=24% Similarity=0.520 Sum_probs=36.8
Q ss_pred EEEEcCCCceEEEEecCCCCcccceeee------cC-CcEEEEEE--cCCce-------EEEEEEEc
Q 028871 21 IITWNYGGNEVAVEGSWDNWTSRRILHR------SG-KDHSILLV--LPSGV-------YHYKFIVD 71 (202)
Q Consensus 21 ~f~w~~~g~~V~V~GsF~nW~~~~~m~k------~~-~~f~~~l~--Lp~G~-------y~YKFiVD 71 (202)
.-.|.+||.--.|.|+||||++..-..| ++ +.|.++++ |..|. -+|.|.-|
T Consensus 135 ~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 135 FMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred eEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 4459999999999999999998643433 33 57888875 77763 35666544
No 56
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=85.17 E-value=3.4 Score=43.60 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=40.7
Q ss_pred EEEE-EcCCCceEEEEecCCCCcc----cceee-ecCCcEEEEEE-cCCceEEEEEEEcCee
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTS----RRILH-RSGKDHSILLV-LPSGVYHYKFIVDGDW 74 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~----~~~m~-k~~~~f~~~l~-Lp~G~y~YKFiVDG~w 74 (202)
|.|+ |++.+++|.|. -|+.|.. .++|. +.++.|.+.+. +.+|. .|+|.|+|.+
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 6776 88899999987 7888853 35664 45678988665 78887 6999999854
No 57
>PLN02877 alpha-amylase/limit dextrinase
Probab=84.03 E-value=2.6 Score=43.41 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=41.3
Q ss_pred eEEEE-EcCCCceEEEEecCCCCc---c--cceeeecCCcEEEEEEc-CCceEEEEEEEc------Ce----eecCCCCC
Q 028871 19 PTIIT-WNYGGNEVAVEGSWDNWT---S--RRILHRSGKDHSILLVL-PSGVYHYKFIVD------GD----WRYIPDLP 81 (202)
Q Consensus 19 pv~f~-w~~~g~~V~V~GsF~nW~---~--~~~m~k~~~~f~~~l~L-p~G~y~YKFiVD------G~----w~~dp~~p 81 (202)
-++|+ |.+.|++|.|.- |++|. . .++|.+.++.|++.+.- ..|. .|+|.|+ |. ...||..-
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~-~Y~Y~V~v~~p~~g~~~~~~v~DPYA~ 300 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGC-YYVYEVSVYHPSTGKVETCYANDPYAR 300 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCCC-eeEEEEeecccCCCcccccccCCccce
Confidence 46676 999999999884 55543 2 24677667899998763 4454 4666665 32 25677665
Q ss_pred ee
Q 028871 82 FV 83 (202)
Q Consensus 82 ~~ 83 (202)
..
T Consensus 301 al 302 (970)
T PLN02877 301 GL 302 (970)
T ss_pred EE
Confidence 43
No 58
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=73.91 E-value=11 Score=29.86 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=32.3
Q ss_pred eEEEEEcCC-CceEEEEecCCCCcccceee-ecCCcEEEEEEcCCceEEEE
Q 028871 19 PTIITWNYG-GNEVAVEGSWDNWTSRRILH-RSGKDHSILLVLPSGVYHYK 67 (202)
Q Consensus 19 pv~f~w~~~-g~~V~V~GsF~nW~~~~~m~-k~~~~f~~~l~Lp~G~y~YK 67 (202)
.|+|.|... +.+|...++..-|... .+. +.+..|+.+++- +|.|.|+
T Consensus 63 TVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 63 TVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYY 111 (128)
T ss_pred EEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEE
Confidence 567888876 8999999888544432 222 224567777665 8999997
No 59
>PRK10785 maltodextrin glucosidase; Provisional
Probab=62.55 E-value=44 Score=32.53 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=41.1
Q ss_pred CCCceeEEEEEcCC--CceEEEEecCCCCcccceeeecCC-----cEEEEEEcC--CceEEEEEEE--cCe
Q 028871 14 LEKGVPTIITWNYG--GNEVAVEGSWDNWTSRRILHRSGK-----DHSILLVLP--SGVYHYKFIV--DGD 73 (202)
Q Consensus 14 ~~~~vpv~f~w~~~--g~~V~V~GsF~nW~~~~~m~k~~~-----~f~~~l~Lp--~G~y~YKFiV--DG~ 73 (202)
....+.+.++-..+ .+.|.|.-.+++-....+|.+.+. .|++.+.++ .+++.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 44556666654432 468898777776555678987532 488888885 7889999988 553
No 60
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=61.15 E-value=6.3 Score=39.44 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=28.1
Q ss_pred EEEE-EcCCCceEEEEecCCCCcccceee---ec-CCcEEEEEE
Q 028871 20 TIIT-WNYGGNEVAVEGSWDNWTSRRILH---RS-GKDHSILLV 58 (202)
Q Consensus 20 v~f~-w~~~g~~V~V~GsF~nW~~~~~m~---k~-~~~f~~~l~ 58 (202)
+.++ |.++++.|.++|+||+|... .+. |. -+.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~-~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPS-SNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCc-ccccCcccccceeEEecC
Confidence 5555 99999999999999999985 333 32 246776654
No 61
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=55.66 E-value=34 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCcccceeeecCC-cEEEEEEc-CCceEEEEEE--Ec--CeeecC
Q 028871 38 DNWTSRRILHRSGK-DHSILLVL-PSGVYHYKFI--VD--GDWRYI 77 (202)
Q Consensus 38 ~nW~~~~~m~k~~~-~f~~~l~L-p~G~y~YKFi--VD--G~w~~d 77 (202)
..|+. .||...++ .|...+.+ .+|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 45876 79998866 69998887 5799999976 56 467765
No 62
>PLN00115 pollen allergen group 3; Provisional
Probab=53.34 E-value=51 Score=25.62 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=32.8
Q ss_pred ceEEEEecC-CCCcccceeeec-CCcEEEEEE-cCCceEEEEEEEc-CeeecC
Q 028871 29 NEVAVEGSW-DNWTSRRILHRS-GKDHSILLV-LPSGVYHYKFIVD-GDWRYI 77 (202)
Q Consensus 29 ~~V~V~GsF-~nW~~~~~m~k~-~~~f~~~l~-Lp~G~y~YKFiVD-G~w~~d 77 (202)
..|.|.++= .+|.. +|.|+ +..|.+.-. .+.|-..+||..+ |.+.+.
T Consensus 48 ~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~va 98 (118)
T PLN00115 48 SEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRVV 98 (118)
T ss_pred EEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEEE
Confidence 678888863 46732 89998 568987543 3458899999886 655433
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=51.22 E-value=41 Score=23.70 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=26.7
Q ss_pred eEEEEEcCC-CceEE-EEecCCCCcccceeeecCCcEEEEEEcCCceEEEE
Q 028871 19 PTIITWNYG-GNEVA-VEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 67 (202)
Q Consensus 19 pv~f~w~~~-g~~V~-V~GsF~nW~~~~~m~k~~~~f~~~l~Lp~G~y~YK 67 (202)
.++|++..+ +.+|. ..|.+.++...-.+...+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 456666643 56665 44565443322234444556766554 57888875
No 64
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=50.29 E-value=44 Score=22.53 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=30.0
Q ss_pred EEEEEcCCCceEEEEecCCCCcccceeeecCCcEEEEEEcCCceEEEEEEEcCe
Q 028871 20 TIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGD 73 (202)
Q Consensus 20 v~f~w~~~g~~V~V~GsF~nW~~~~~m~k~~~~f~~~l~Lp~G~y~YKFiVDG~ 73 (202)
+.++=.+.|-+|+|-|.+-+ ..|+ ....|++|.|.+++.-+|-
T Consensus 4 l~V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECCC
Confidence 34555677889999987766 2232 1223889999999999883
No 65
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=50.19 E-value=66 Score=24.21 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=38.7
Q ss_pred CCceeEEEEEcCC--CceEEEEecCCCCcccceee----e-----c--C--CcEEEEEEcCCc--------eEEEEEEEc
Q 028871 15 EKGVPTIITWNYG--GNEVAVEGSWDNWTSRRILH----R-----S--G--KDHSILLVLPSG--------VYHYKFIVD 71 (202)
Q Consensus 15 ~~~vpv~f~w~~~--g~~V~V~GsF~nW~~~~~m~----k-----~--~--~~f~~~l~Lp~G--------~y~YKFiVD 71 (202)
...+.-++.-..- .+.|.|.=+||+|+....+. . + + +.|...+.|++. .+--+|.|+
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 4556666666643 48899999999998753322 1 1 1 258888888643 367788888
Q ss_pred Ce
Q 028871 72 GD 73 (202)
Q Consensus 72 G~ 73 (202)
|.
T Consensus 98 g~ 99 (113)
T PF03370_consen 98 GQ 99 (113)
T ss_dssp TE
T ss_pred CC
Confidence 85
No 66
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.99 E-value=17 Score=35.81 Aligned_cols=26 Identities=27% Similarity=0.727 Sum_probs=21.4
Q ss_pred CCceEEEEEEEcCeee---cCCCCCeeeC
Q 028871 60 PSGVYHYKFIVDGDWR---YIPDLPFVAD 85 (202)
Q Consensus 60 p~G~y~YKFiVDG~w~---~dp~~p~~~d 85 (202)
..|.|++||.++|+|+ +|+.+|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 3599999999999996 4788887654
No 67
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=47.26 E-value=59 Score=24.96 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=24.1
Q ss_pred ceeEEEEEcCCCceEEEE-ecCCCCcccceeeecCCcEEEEEEcCCceEEEE
Q 028871 17 GVPTIITWNYGGNEVAVE-GSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 67 (202)
Q Consensus 17 ~vpv~f~w~~~g~~V~V~-GsF~nW~~~~~m~k~~~~f~~~l~Lp~G~y~YK 67 (202)
+=.|+|+|..++..|... |..- +....-....+..|+.+++ .+|.|.|.
T Consensus 22 GdTV~f~n~d~~Hnv~~~~~~~p-~g~~~~~s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 22 GDTVTFVPTDKGHNVETIKGMIP-EGAEAFKSKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCEEEEEECCCCeeEEEccCCCc-CCcccccCCCCCEEEEEeC-CCEEEEEE
Confidence 345678887767766642 2111 0000000112345665555 46777776
No 68
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=45.27 E-value=60 Score=24.91 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=11.1
Q ss_pred CCcEEEEEEcCCceEEEE
Q 028871 50 GKDHSILLVLPSGVYHYK 67 (202)
Q Consensus 50 ~~~f~~~l~Lp~G~y~YK 67 (202)
+..|+.++. .+|.|.|.
T Consensus 83 G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 83 GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEec-CCcEEEEE
Confidence 446666664 56777775
No 69
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=41.89 E-value=49 Score=30.74 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=20.0
Q ss_pred cCCcEEEEE--EcCCceEEEEEEEcCe
Q 028871 49 SGKDHSILL--VLPSGVYHYKFIVDGD 73 (202)
Q Consensus 49 ~~~~f~~~l--~Lp~G~y~YKFiVDG~ 73 (202)
.+|.|+..+ ..++|.|+.++.+||.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 456898765 4589999999999983
No 70
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=40.49 E-value=44 Score=28.50 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=11.6
Q ss_pred EEcC--eeecCCCCCee
Q 028871 69 IVDG--DWRYIPDLPFV 83 (202)
Q Consensus 69 iVDG--~w~~dp~~p~~ 83 (202)
|-|| .|.+||+...+
T Consensus 68 VsDGk~lW~YDpdleQV 84 (210)
T TIGR03009 68 ICNGTAVYAYNGLAKTV 84 (210)
T ss_pred EECCCEEEEECCChhhE
Confidence 3488 49999999854
No 71
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=35.79 E-value=48 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.8
Q ss_pred EEEEEcCCceEEEEEEEcC
Q 028871 54 SILLVLPSGVYHYKFIVDG 72 (202)
Q Consensus 54 ~~~l~Lp~G~y~YKFiVDG 72 (202)
+..+.|+.|+|..+|...+
T Consensus 92 ~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 92 SVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEESEEEEEEEEESS
T ss_pred EEEEeeCCCeeEEEEEEEC
Confidence 3468899999999999875
No 72
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.60 E-value=2.3e+02 Score=25.59 Aligned_cols=70 Identities=17% Similarity=0.357 Sum_probs=41.4
Q ss_pred eEEEEEcCCCc------eEEEEecCCCCcccceeeecCCc---EEEE--EEcCCc-eEEEEEEE----------cCeeec
Q 028871 19 PTIITWNYGGN------EVAVEGSWDNWTSRRILHRSGKD---HSIL--LVLPSG-VYHYKFIV----------DGDWRY 76 (202)
Q Consensus 19 pv~f~w~~~g~------~V~V~GsF~nW~~~~~m~k~~~~---f~~~--l~Lp~G-~y~YKFiV----------DG~w~~ 76 (202)
+.+|+|...+. ++||+ =.+|.+..||.+++=+ |..+ ..+.|| +|.+.-.| =+.|..
T Consensus 115 ~~~f~w~~TapH~t~~w~yYiT--K~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vWq~ 192 (308)
T COG3397 115 PQTFVWKATAPHNTAYWKYYIT--KPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVWQR 192 (308)
T ss_pred ceEEEEEeecCCCCcceEEEEC--CCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEEEe
Confidence 66899985432 57776 4678887788776422 3222 334454 34444433 356755
Q ss_pred CCCCCeeeCCCCCeeeeEEec
Q 028871 77 IPDLPFVADELGGVCNLLDVH 97 (202)
Q Consensus 77 dp~~p~~~d~~G~~nNvl~V~ 97 (202)
. |..+..+|+++|.
T Consensus 193 ~-------Dt~n~Fyn~iDv~ 206 (308)
T COG3397 193 A-------DTGNAFYNCIDVN 206 (308)
T ss_pred c-------cCCCcceEEEEEe
Confidence 4 3334689999985
No 73
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=35.57 E-value=99 Score=24.18 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=17.7
Q ss_pred EcCCceEEEEEEEc---CeeecCCCC
Q 028871 58 VLPSGVYHYKFIVD---GDWRYIPDL 80 (202)
Q Consensus 58 ~Lp~G~y~YKFiVD---G~w~~dp~~ 80 (202)
.|+||.|+++..+. +.|....+.
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 57899999999884 478876544
No 74
>PLN00193 expansin-A; Provisional
Probab=34.22 E-value=1.2e+02 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=32.4
Q ss_pred ceEEEEecCCCCcccceeeecC-CcEEEEEEcCCceEEEEEEE-cCeeecC
Q 028871 29 NEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPSGVYHYKFIV-DGDWRYI 77 (202)
Q Consensus 29 ~~V~V~GsF~nW~~~~~m~k~~-~~f~~~l~Lp~G~y~YKFiV-DG~w~~d 77 (202)
..|.|.|+=.+| ++|.|+- ..|.+...|+.+-..||+.. ||++.+.
T Consensus 189 ~~v~Ik~~~~~W---~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~ 236 (256)
T PLN00193 189 QSVSIKGSKTGW---MAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFF 236 (256)
T ss_pred EEEEEecCCCCe---eECcccccceeEecCCCCCCCEEEEEEEcCCeEEEE
Confidence 468888875566 6898884 58888766765578888866 5665443
No 75
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=32.40 E-value=97 Score=28.32 Aligned_cols=53 Identities=26% Similarity=0.279 Sum_probs=34.2
Q ss_pred CceEEEEe---cCCCCcccceeeecC-CcEEEEEEc------CCceEEEEEEEcCeee---cCCCC
Q 028871 28 GNEVAVEG---SWDNWTSRRILHRSG-KDHSILLVL------PSGVYHYKFIVDGDWR---YIPDL 80 (202)
Q Consensus 28 g~~V~V~G---sF~nW~~~~~m~k~~-~~f~~~l~L------p~G~y~YKFiVDG~w~---~dp~~ 80 (202)
|.++.+.| +=..|+-.+..-..+ +....++.| .+|.|+-.|.+||++. .||.-
T Consensus 201 GG~i~~~G~~~~g~pW~IgI~~P~~~~~~~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~HilDP~T 266 (337)
T COG1477 201 GGEIRVIGKNPDGKPWRIGIQNPFAPRGAVQGIVPLKDGAVATSGDYERYFEVDGKRYHHILDPKT 266 (337)
T ss_pred CcceEEeccCCCCCCcEEEEeCCCCCCCceeEEEecCCceEEcccCceeEEEECCEEEeeecCCCC
Confidence 45788888 445687654433333 345555555 5799999999999754 46644
No 76
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=32.38 E-value=72 Score=23.33 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCceEEEEEEEcCeeecCCCCC
Q 028871 51 KDHSILLVLPSGVYHYKFIVDGDWRYIPDLP 81 (202)
Q Consensus 51 ~~f~~~l~Lp~G~y~YKFiVDG~w~~dp~~p 81 (202)
+.=++.++|+||+|....+. |.+.+-|..|
T Consensus 51 Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~ 80 (87)
T PF14347_consen 51 GQTELNIELPPGKHTLTLQL-GDGDHVPHDP 80 (87)
T ss_pred CEEEEEEEeCCCCEEEEEEe-CCCCcccCCC
Confidence 44467799999999999877 4445555444
No 77
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=32.12 E-value=1.6e+02 Score=24.04 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=21.4
Q ss_pred ceeeecCC-cEEEEEEc-CCceEEEEEEEc
Q 028871 44 RILHRSGK-DHSILLVL-PSGVYHYKFIVD 71 (202)
Q Consensus 44 ~~m~k~~~-~f~~~l~L-p~G~y~YKFiVD 71 (202)
-||.-+++ -|-..+.| .+|+|+-+|.|+
T Consensus 88 mPM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 88 MPMVASDGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEEEETTEEEEEEEE-STSSEEEEEEEEEE
T ss_pred ceeecCcCccccccccCCCCccEEEEEEEc
Confidence 37887776 45667777 689999999997
No 78
>PF14121 DUF4289: Domain of unknown function (DUF4289)
Probab=31.93 E-value=41 Score=32.85 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCCCCCCCCeEeeceeEeecccc-cCceEEEeeeeEecceeE
Q 028871 152 DEASSSKPKHVVLNHVFVDDGWK-SKSVVALGLTHRFQSKYV 192 (202)
Q Consensus 152 d~~~Lp~P~Hv~lNHLy~~s~~~-~~~v~~~~~T~Ry~~Kyv 192 (202)
...+||.|.-++-|.||....-. |-=-+-+|++-||.+||-
T Consensus 494 ~~~il~lP~~~~~~~lYy~~~lfkk~L~lq~G~~~~YfT~Y~ 535 (614)
T PF14121_consen 494 GEDILPLPEFVTRNNLYYQFKLFKKALFLQTGFDVRYFTKYY 535 (614)
T ss_pred CCCcCccCeEEEEeEEEEEchhhhhhheeeeeeEEEEeeccc
Confidence 47889999999999999987644 333456999999999984
No 79
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.75 E-value=1.2e+02 Score=22.06 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=9.8
Q ss_pred CCcEEEEE-EcCCceEEEE
Q 028871 50 GKDHSILL-VLPSGVYHYK 67 (202)
Q Consensus 50 ~~~f~~~l-~Lp~G~y~YK 67 (202)
++..++.+ .+.+|.|+|.
T Consensus 73 g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp T-EEEEEEEE-S-EEEEEB
T ss_pred CCEEEEEEcCCCCEEEEEE
Confidence 34555554 7888988774
No 80
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.55 E-value=33 Score=25.95 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=15.1
Q ss_pred CCceEEEEEEEcCeeecCCC
Q 028871 60 PSGVYHYKFIVDGDWRYIPD 79 (202)
Q Consensus 60 p~G~y~YKFiVDG~w~~dp~ 79 (202)
|.|-|+|.|. ||.|++.-+
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 4588999995 999998754
No 81
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.45 E-value=50 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=13.3
Q ss_pred EEEcCCceEEEEEEE---cCeeecCC
Q 028871 56 LLVLPSGVYHYKFIV---DGDWRYIP 78 (202)
Q Consensus 56 ~l~Lp~G~y~YKFiV---DG~w~~dp 78 (202)
...|+||.|.++-.+ +|.|..+.
T Consensus 33 ~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 33 YTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEeCCCEEEEEEEEEECCCCCcCccc
Confidence 467999999988776 36776654
No 82
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=29.40 E-value=38 Score=25.33 Aligned_cols=18 Identities=44% Similarity=1.110 Sum_probs=14.7
Q ss_pred CceEEEEEEEcCeeecCCC
Q 028871 61 SGVYHYKFIVDGDWRYIPD 79 (202)
Q Consensus 61 ~G~y~YKFiVDG~w~~dp~ 79 (202)
.|-|+|.| +||.|++.-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 58899999 4999998654
No 83
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.14 E-value=35 Score=33.31 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=24.5
Q ss_pred CcEEEEEEcCCce-EEEEEEEcC----eeecCCCCCee
Q 028871 51 KDHSILLVLPSGV-YHYKFIVDG----DWRYIPDLPFV 83 (202)
Q Consensus 51 ~~f~~~l~Lp~G~-y~YKFiVDG----~w~~dp~~p~~ 83 (202)
|.+-+...++||. |.|+|.||+ -|-++.....-
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R 135 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQR 135 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccc
Confidence 4667788999995 999999994 36666555543
No 84
>PLN00050 expansin A; Provisional
Probab=28.55 E-value=1.6e+02 Score=25.82 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=31.3
Q ss_pred eEEEEecCCCCcccceeeecC-CcEEEEEEcCCceEEEEEEE-cCeeecC
Q 028871 30 EVAVEGSWDNWTSRRILHRSG-KDHSILLVLPSGVYHYKFIV-DGDWRYI 77 (202)
Q Consensus 30 ~V~V~GsF~nW~~~~~m~k~~-~~f~~~l~Lp~G~y~YKFiV-DG~w~~d 77 (202)
.|.|.|+=.+| ++|.|+- ..|.+.-.|+.+-..||+.. ||++...
T Consensus 182 ~V~ikg~~~~W---~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~ 228 (247)
T PLN00050 182 AVSIKGSKSNW---QAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVIS 228 (247)
T ss_pred EEEEecCCCCe---eECccccCceeEccCCCCCCcEEEEEEecCCcEEEE
Confidence 58888875456 6899984 48987666765578888866 4655443
No 85
>PLN03023 Expansin-like B1; Provisional
Probab=28.38 E-value=1.4e+02 Score=26.22 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=34.4
Q ss_pred eeEEEEEcCCC---ceEEEEec-CCCCcccceeeec-CCcEEEEEEcCCceEEEEEEEc
Q 028871 18 VPTIITWNYGG---NEVAVEGS-WDNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIVD 71 (202)
Q Consensus 18 vpv~f~w~~~g---~~V~V~Gs-F~nW~~~~~m~k~-~~~f~~~l~Lp~G~y~YKFiVD 71 (202)
..+.+.+.+|. ..|.|.|+ =.+| ++|.|+ +..|.+.-. +.|.+.+||.|.
T Consensus 162 l~vlv~~vgG~GdI~~V~Ik~~~~~~W---~~M~rnwGa~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 162 LAIVMLYQAGQNDILAVEIWQEDCKEW---RGMRKAYGAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred EEEEEEEcCCCccEEEEEEEecCCCCc---eECccCCcceeEcCCC-CCCceeEEEEEE
Confidence 45555555432 46788884 3577 489998 558988544 468899999885
No 86
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=27.99 E-value=1.1e+02 Score=23.03 Aligned_cols=26 Identities=38% Similarity=0.726 Sum_probs=19.4
Q ss_pred EEEEEcC-CceEEEEEEEcCeeecCCCC
Q 028871 54 SILLVLP-SGVYHYKFIVDGDWRYIPDL 80 (202)
Q Consensus 54 ~~~l~Lp-~G~y~YKFiVDG~w~~dp~~ 80 (202)
.+-+.=| .|-|+|.|. +|.|+..-+.
T Consensus 61 QIWlsSpisG~~hf~~~-~~~W~~~r~g 87 (109)
T PF01491_consen 61 QIWLSSPISGPFHFDYD-DGKWIDTRDG 87 (109)
T ss_dssp EEEEEETTTEEEEEEEE-SSSEEETTTT
T ss_pred HHHHhcccCCceEEEEc-CCEEEECCCC
Confidence 3344456 899999999 9999977543
No 87
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=27.88 E-value=86 Score=23.71 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=18.2
Q ss_pred cEEEEEEcCCceEEEEEEEcCeeecCCC
Q 028871 52 DHSILLVLPSGVYHYKFIVDGDWRYIPD 79 (202)
Q Consensus 52 ~f~~~l~Lp~G~y~YKFiVDG~w~~dp~ 79 (202)
.|... |.|-++|.|. ||.|+.+-+
T Consensus 59 IWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 59 LWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred eeEec---CCCCccceec-CCeEEECCC
Confidence 56554 5788999995 999998754
No 88
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=25.46 E-value=93 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=13.0
Q ss_pred EEEEcCCceEEEEEEEcC
Q 028871 55 ILLVLPSGVYHYKFIVDG 72 (202)
Q Consensus 55 ~~l~Lp~G~y~YKFiVDG 72 (202)
..+.++.|.|..+|+..|
T Consensus 101 ~~v~~~~G~~~l~~~~~~ 118 (129)
T smart00606 101 ATVTLPAGVHDVYLVFKG 118 (129)
T ss_pred EEEccCCceEEEEEEEEC
Confidence 346677899888887655
No 89
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=25.18 E-value=71 Score=24.05 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=18.0
Q ss_pred eEEEEEEEcCeeecCCCCCeeeCCCC
Q 028871 63 VYHYKFIVDGDWRYIPDLPFVADELG 88 (202)
Q Consensus 63 ~y~YKFiVDG~w~~dp~~p~~~d~~G 88 (202)
.-.+||++||+-+--..-|-.-|-.|
T Consensus 62 m~slRfL~dG~rI~~dqTP~dldmEd 87 (103)
T COG5227 62 MSSLRFLFDGKRIDLDQTPGDLDMED 87 (103)
T ss_pred cceeEEEEcceecCCCCChhhcCCcc
Confidence 36899999999776666665444333
No 90
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=24.02 E-value=70 Score=28.50 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=20.6
Q ss_pred cCCceEEEEEEEcCeeec---CCCCCee
Q 028871 59 LPSGVYHYKFIVDGDWRY---IPDLPFV 83 (202)
Q Consensus 59 Lp~G~y~YKFiVDG~w~~---dp~~p~~ 83 (202)
-+.|.|..||.++|.|+. |+..|..
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 367999999999998864 7788864
No 91
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=22.89 E-value=74 Score=27.61 Aligned_cols=22 Identities=32% Similarity=0.853 Sum_probs=17.6
Q ss_pred CceEEEEEEEcCeee---cCCCCCe
Q 028871 61 SGVYHYKFIVDGDWR---YIPDLPF 82 (202)
Q Consensus 61 ~G~y~YKFiVDG~w~---~dp~~p~ 82 (202)
.|.|.+||.+||.|+ +|+..|.
T Consensus 87 ~G~y~v~l~~~G~w~~V~VDd~lP~ 111 (298)
T PF00648_consen 87 NGIYTVRLFKNGEWREVTVDDRLPC 111 (298)
T ss_dssp SSEEEEEEEETTEEEEEEEES-EEE
T ss_pred CceeeEeeccCCeeeeeccchhhhc
Confidence 399999999999997 3666676
No 92
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=22.65 E-value=2.8e+02 Score=21.24 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=26.9
Q ss_pred eEEEEecCCCCccccee-eecCCcEEEEEEcCCceEEEEEEEcCee
Q 028871 30 EVAVEGSWDNWTSRRIL-HRSGKDHSILLVLPSGVYHYKFIVDGDW 74 (202)
Q Consensus 30 ~V~V~GsF~nW~~~~~m-~k~~~~f~~~l~Lp~G~y~YKFiVDG~w 74 (202)
..++.|+|.+|+. +.- +..++.|.+...-+--..-+-..+|+.|
T Consensus 30 ~~~~~g~~g~W~~-iaA~et~~GgyqVlWk~~~~~~~~vW~tDsng 74 (109)
T PF07483_consen 30 QPVVAGQFGGWQP-IAAEETSNGGYQVLWKNPGTDQFGVWNTDSNG 74 (109)
T ss_pred EEEecCccCCcce-eeeEEecCCeeEEEEecCCCCeEEEEEecCCC
Confidence 5688999999987 444 5566667776664432333334444433
No 93
>PF14645 Chibby: Chibby family
Probab=21.38 E-value=72 Score=24.59 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=14.0
Q ss_pred EEcCCceEEEEEEEcCeee
Q 028871 57 LVLPSGVYHYKFIVDGDWR 75 (202)
Q Consensus 57 l~Lp~G~y~YKFiVDG~w~ 75 (202)
+.|.=|.-+|+| .||.|+
T Consensus 43 ~~l~Lg~~~l~F-~dG~W~ 60 (116)
T PF14645_consen 43 PRLNLGDQTLVF-EDGQWT 60 (116)
T ss_pred ceEeECCeEEEE-ECCEEe
Confidence 334447888999 999999
No 94
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=20.74 E-value=90 Score=27.54 Aligned_cols=25 Identities=32% Similarity=0.725 Sum_probs=20.4
Q ss_pred cCCceEEEEEEEcCeeec---CCCCCee
Q 028871 59 LPSGVYHYKFIVDGDWRY---IPDLPFV 83 (202)
Q Consensus 59 Lp~G~y~YKFiVDG~w~~---dp~~p~~ 83 (202)
-+.|.|..||..+|.|+. |+..|..
T Consensus 106 ~~~G~y~v~l~~~G~w~~V~VDD~lP~~ 133 (315)
T cd00044 106 NYAGIYHFRFWKNGEWVEVVIDDRLPTS 133 (315)
T ss_pred CcCcEEEEEEEECCEEEEEEecCCCeec
Confidence 467999999999998875 7777764
No 95
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=20.47 E-value=1e+02 Score=23.62 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.6
Q ss_pred CceEEEeeeeEecceeEEEE
Q 028871 176 KSVVALGLTHRFQSKYVTVV 195 (202)
Q Consensus 176 ~~v~~~~~T~Ry~~KyvT~v 195 (202)
++++.+-...|=.+|+||+|
T Consensus 25 ~~~I~Iri~qR~grK~VTiI 44 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKTLTTV 44 (110)
T ss_pred cceEEEEEEEccCCccEEEE
Confidence 55777888888888999998
No 96
>PF15655 Imm-NTF2: NTF2 fold immunity protein
Probab=20.34 E-value=84 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=11.7
Q ss_pred eEEEEEE-EcCeeecCC
Q 028871 63 VYHYKFI-VDGDWRYIP 78 (202)
Q Consensus 63 ~y~YKFi-VDG~w~~dp 78 (202)
.|+|.++ +||.|.+|.
T Consensus 101 ~~~f~l~~~~g~W~ID~ 117 (130)
T PF15655_consen 101 KYRFILKRKDGKWKIDK 117 (130)
T ss_pred ceEEEEEEECCEEeEeh
Confidence 4555554 699999998
No 97
>PRK10533 putative lipoprotein; Provisional
Probab=20.18 E-value=1.7e+02 Score=24.22 Aligned_cols=34 Identities=15% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCCCceeEEEEEcCCCceEEEEecCCCCcccceeeecCCcEEE
Q 028871 13 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSI 55 (202)
Q Consensus 13 ~~~~~vpv~f~w~~~g~~V~V~GsF~nW~~~~~m~k~~~~f~~ 55 (202)
..++.||+.+...++.++ |+..+-|.|.|..|.+
T Consensus 114 ~DaRnIpLrv~L~~~~~~---------WqDEVLMirEg~cWvV 147 (171)
T PRK10533 114 RDARNIPLRVDLKQGDQG---------WQDEVLMIREGQCWVV 147 (171)
T ss_pred CccccccEEEEeccCCcc---------ceeEEEEEecCCeEEE
Confidence 345566666666655443 9998999999999987
Done!