BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028873
         (202 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O74545|YCV6_SCHPO Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1
          Length = 301

 Score = 96.7 bits (239), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 20/193 (10%)

Query: 18  GLDDLRDWT-NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE 75
           G+DDLR+WT   +Q  + IY+  R ++V++++  Y+V+      G +V    F++   ++
Sbjct: 107 GMDDLREWTLGFLQPSVKIYLTERTYKVIERSFPYMVNAKNATGGGSVPTFDFHVFSPDK 166

Query: 76  PFTVQDLKI--TPLPVWHGA---------GYRSLGFRFGNICYISDVSEIPEETYPFLQD 124
           PF + D+ I  TPLPV HG           Y  +GFR G++ YISD + +P  T   ++ 
Sbjct: 167 PFKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGDMSYISDCNYVPPTTKKLMEG 226

Query: 125 CEILIMDALRPDRSSSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLM 182
             ++++DAL+ +   S HF   +A E +  ++  P R L+ G  H ++H +  +EL  L 
Sbjct: 227 SNVVVVDALKHEPYPS-HFSFKQAEEFIASLEHVPSRVLYTGFSHKVEHNETVKELSVLK 285

Query: 183 ETEGLDVQLSYDG 195
               +  + +YDG
Sbjct: 286 ----VPTEPAYDG 294


>sp|Q7MUY1|LIPB_PORGI Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC
           BAA-308 / W83) GN=lipB PE=3 SV=1
          Length = 492

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 18  GLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPF 77
           GLDDLR  T    R + +Y      + ++   +Y+   +   PG  + +L   +  + PF
Sbjct: 83  GLDDLR--TICWHRELAVYAEQNVLDSIRDRLHYVFRKNPY-PGTPLLKL-CEVKPDMPF 138

Query: 78  TVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDR 137
            V DL + PL + HG     LG++ G + +++D+ +I  E    L+ C +L ++ LR  +
Sbjct: 139 QVADLTVEPLRIMHGR-LPILGYKIGEMAFLTDMKDIAAEEIECLKSCRLLFINGLRYRK 197

Query: 138 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 196
              +H  + +A++ + +I    ++ I   HL  H  +++E L+++      +   YDGL
Sbjct: 198 EHPSHQTIEQAIDTIGQIGNPESVLI---HLSHHAPLHQEHLEILPPH---IHSGYDGL 250


>sp|P16692|PHNP_ECOLI Protein PhnP OS=Escherichia coli (strain K12) GN=phnP PE=1 SV=1
          Length = 252

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 18/136 (13%)

Query: 75  EPFTV---QDLKITPLPVWHGA---GYRSLGFRFGNICYISDVSEIPEETYPFLQDC--E 126
           EPF V   Q L++TPLP+ H     GY  L      + ++SD + +PE+T  FL++   +
Sbjct: 124 EPFVVFDLQGLQVTPLPLNHSKLTFGYL-LETAHSRVAWLSDTAGLPEKTLKFLRNNQPQ 182

Query: 127 ILIMDALRPDRSSS--THFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMET 184
           +++MD   P R+ +   H  L   L   + I+  R +   + H  D   +   L    E 
Sbjct: 183 VMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGFE- 241

Query: 185 EGLDVQLSYDGLRVPV 200
                 + +DG+ + V
Sbjct: 242 ------VGFDGMEIGV 251


>sp|Q0C639|HIS4_HYPNA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
          imidazole-4-carboxamide isomerase OS=Hyphomonas
          neptunium (strain ATCC 15444) GN=hisA PE=3 SV=1
          Length = 241

 Score = 34.3 bits (77), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 40 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRS 97
          R F  M  TH ++VD +G   GA V+      I         LK TP PV  G G R+
Sbjct: 39 RAFHAMGFTHLHVVDLNGAFAGAPVNRAAVEGI---------LKATPAPVQLGGGIRT 87


>sp|Q9M9Q6|SCP50_ARATH Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50
           PE=2 SV=1
          Length = 444

 Score = 32.7 bits (73), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 122 LQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKL 181
            ++C   + D LR D   S  F +  ALE  + +     L+ GM+ L D     EE +K 
Sbjct: 305 FEECSDEVEDVLRADVMKSVKFMVEYALERTQVL-----LYQGMLDLRDGVVSTEEWMKT 359

Query: 182 METEGL 187
           M   GL
Sbjct: 360 MNWSGL 365


>sp|Q5NUA6|NF2L2_BOVIN Nuclear factor erythroid 2-related factor 2 OS=Bos taurus GN=NFE2L2
           PE=2 SV=2
          Length = 607

 Score = 31.2 bits (69), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 107 YISDVSEIPEETYPFLQDCEI--LIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164
           Y  D  ++  ET+PF+ D E+      +L PD  S  H   P       + Q   TL + 
Sbjct: 115 YFDDCMQLLAETFPFVDDNEVSSATFQSLVPDIPS--HIESP-VFTAPPQAQSPETLIVQ 171

Query: 165 MM-----HLMDHEKVNEELLKLMETEGLDVQ 190
           +       + D E+V EELL + E + L++Q
Sbjct: 172 VATAVLDDMQDIEQVWEELLSIPELQCLNIQ 202


>sp|Q33C20|CYF_NICTO Apocytochrome f OS=Nicotiana tomentosiformis GN=petA PE=3 SV=1
          Length = 320

 Score = 30.8 bits (68), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 57  GIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLG 99
           G +PG   SE+ F I+  +P T +D++    P++ G G R  G
Sbjct: 151 GPVPGQKYSEITFPILSPDPATKKDVRFLKYPIYVG-GNRGRG 192


>sp|A1RT13|SYA_PYRIL Alanine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
           JCM 9189) GN=alaS PE=3 SV=1
          Length = 892

 Score = 30.4 bits (67), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 29  VQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQ 80
           VQ ++P+YV +      +  + +++   G++P   +  LQ    DEEPF +Q
Sbjct: 650 VQENLPVYVKIMPRNEAEAKYGFILYQGGVVPTREIRVLQIG-PDEEPFDIQ 700


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.142    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,128,598
Number of Sequences: 539616
Number of extensions: 3157013
Number of successful extensions: 7412
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7401
Number of HSP's gapped (non-prelim): 16
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)