Query 028873
Match_columns 202
No_of_seqs 115 out of 1158
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 6.3E-35 1.4E-39 236.0 18.7 181 6-200 70-252 (252)
2 TIGR02649 true_RNase_BN ribonu 100.0 1.1E-34 2.3E-39 240.7 15.3 181 6-200 58-303 (303)
3 TIGR02651 RNase_Z ribonuclease 100.0 1.3E-33 2.9E-38 233.4 15.9 181 6-200 55-299 (299)
4 PRK05184 pyrroloquinoline quin 100.0 1.5E-31 3.1E-36 221.5 17.6 178 6-200 84-302 (302)
5 COG1234 ElaC Metal-dependent h 100.0 1.5E-31 3.3E-36 220.1 15.7 190 7-201 58-292 (292)
6 PRK02126 ribonuclease Z; Provi 100.0 3E-30 6.6E-35 215.8 17.2 168 6-179 51-329 (334)
7 PRK11244 phnP carbon-phosphoru 100.0 3.7E-30 8E-35 208.0 15.9 171 6-200 70-250 (250)
8 TIGR02108 PQQ_syn_pqqB coenzym 100.0 2.5E-29 5.3E-34 207.8 16.6 176 6-200 83-302 (302)
9 TIGR03307 PhnP phosphonate met 100.0 4.4E-29 9.5E-34 200.3 14.8 169 6-198 60-238 (238)
10 PRK00055 ribonuclease Z; Revie 100.0 8.9E-28 1.9E-32 195.4 13.2 184 6-201 57-267 (270)
11 TIGR02650 RNase_Z_T_toga ribon 99.9 2.6E-26 5.6E-31 185.3 11.8 161 5-174 43-253 (277)
12 PF12706 Lactamase_B_2: Beta-l 99.9 4.6E-23 1E-27 159.6 12.6 147 5-165 32-194 (194)
13 PRK00685 metal-dependent hydro 99.9 3.3E-20 7.2E-25 147.6 16.5 165 5-200 43-228 (228)
14 KOG2121 Predicted metal-depend 99.8 1.5E-21 3.3E-26 171.6 3.2 182 7-200 506-715 (746)
15 PRK04286 hypothetical protein; 99.8 4.4E-20 9.6E-25 152.7 10.0 189 6-198 69-282 (298)
16 COG1235 PhnP Metal-dependent h 99.8 3.4E-19 7.3E-24 145.6 9.5 159 7-179 67-249 (269)
17 TIGR00649 MG423 conserved hypo 99.7 1.8E-16 3.9E-21 137.2 12.5 149 6-169 62-230 (422)
18 PRK11709 putative L-ascorbate 99.7 8.3E-15 1.8E-19 123.6 16.9 156 6-177 113-299 (355)
19 PF02112 PDEase_II: cAMP phosp 99.6 6.4E-14 1.4E-18 116.7 12.5 189 7-195 84-335 (335)
20 COG5212 PDE1 Low-affinity cAMP 99.5 2.9E-13 6.4E-18 107.7 14.2 189 7-198 117-354 (356)
21 COG0595 mRNA degradation ribon 99.2 1.8E-10 4E-15 101.8 11.7 118 6-136 70-203 (555)
22 smart00849 Lactamase_B Metallo 99.0 2E-09 4.3E-14 81.8 10.0 136 5-164 44-183 (183)
23 TIGR03675 arCOG00543 arCOG0054 99.0 6.7E-10 1.5E-14 100.3 7.9 138 6-148 232-387 (630)
24 COG1236 YSH1 Predicted exonucl 99.0 2.8E-09 6.1E-14 92.4 9.0 137 6-151 53-204 (427)
25 PF13483 Lactamase_B_3: Beta-l 98.8 3.5E-08 7.6E-13 74.6 8.9 86 74-164 68-163 (163)
26 TIGR03413 GSH_gloB hydroxyacyl 98.5 2.6E-07 5.6E-12 74.7 7.2 80 5-113 46-129 (248)
27 COG2248 Predicted hydrolase (m 98.5 7.7E-07 1.7E-11 70.7 7.8 120 72-192 137-275 (304)
28 PRK11921 metallo-beta-lactamas 98.5 6.8E-07 1.5E-11 76.9 8.1 86 6-111 73-163 (394)
29 KOG1361 Predicted hydrolase in 98.4 1.7E-06 3.7E-11 75.0 9.6 129 4-155 114-256 (481)
30 COG2220 Predicted Zn-dependent 98.3 9.6E-05 2.1E-09 60.0 16.4 142 5-166 55-213 (258)
31 PLN02398 hydroxyacylglutathion 98.2 3.5E-06 7.5E-11 70.7 7.1 82 5-113 124-209 (329)
32 PRK05452 anaerobic nitric oxid 98.2 7.5E-06 1.6E-10 72.2 8.3 88 5-111 74-167 (479)
33 PRK10241 hydroxyacylglutathion 98.1 6.4E-06 1.4E-10 66.7 5.1 79 6-112 49-129 (251)
34 COG1782 Predicted metal-depend 97.9 0.00011 2.3E-09 64.0 10.7 186 7-200 239-451 (637)
35 KOG1136 Predicted cleavage and 97.9 4.4E-05 9.5E-10 63.3 8.0 125 7-136 65-208 (501)
36 KOG1137 mRNA cleavage and poly 97.8 3.1E-05 6.7E-10 67.7 5.7 124 6-136 69-211 (668)
37 PLN02469 hydroxyacylglutathion 97.8 7.1E-05 1.5E-09 60.9 7.1 80 5-112 49-137 (258)
38 KOG0813 Glyoxylase [General fu 97.7 0.00012 2.6E-09 59.2 6.4 80 5-111 54-140 (265)
39 COG0491 GloB Zn-dependent hydr 97.6 0.00024 5.2E-09 56.2 7.7 100 5-114 65-171 (252)
40 KOG3798 Predicted Zn-dependent 97.6 0.00056 1.2E-08 54.7 9.2 145 4-165 134-299 (343)
41 COG1237 Metal-dependent hydrol 97.5 0.00093 2E-08 53.7 8.9 37 4-43 60-96 (259)
42 PF00753 Lactamase_B: Metallo- 97.3 0.00026 5.6E-09 53.3 4.0 20 6-25 47-66 (194)
43 PLN02962 hydroxyacylglutathion 97.3 0.00063 1.4E-08 55.1 6.0 79 5-112 64-152 (251)
44 TIGR00361 ComEC_Rec2 DNA inter 97.2 0.0052 1.1E-07 56.5 12.2 142 6-180 494-650 (662)
45 PRK11539 ComEC family competen 97.0 0.0095 2.1E-07 55.6 11.5 138 6-180 555-708 (755)
46 KOG0814 Glyoxylase [General fu 97.0 0.0023 5E-08 48.6 5.8 79 5-111 60-141 (237)
47 COG2333 ComEC Predicted hydrol 95.7 0.11 2.4E-06 43.0 9.4 148 6-181 94-259 (293)
48 COG0426 FpaA Uncharacterized f 95.1 0.088 1.9E-06 45.1 6.9 85 7-111 77-166 (388)
49 PF07521 RMMBL: RNA-metabolisi 92.5 0.22 4.8E-06 28.8 3.3 27 139-165 14-40 (43)
50 TIGR03675 arCOG00543 arCOG0054 73.5 8.3 0.00018 35.6 5.7 58 139-200 570-629 (630)
51 PF14597 Lactamase_B_5: Metall 69.6 7.4 0.00016 30.1 3.7 84 3-112 54-138 (199)
52 COG2015 Alkyl sulfatase and re 67.2 3.7 8E-05 36.5 1.9 36 8-43 170-205 (655)
53 PRK09875 putative hydrolase; P 66.8 15 0.00033 30.5 5.4 33 147-179 167-201 (292)
54 TIGR00649 MG423 conserved hypo 60.8 23 0.0005 30.8 5.7 58 139-201 358-418 (422)
55 KOG1135 mRNA cleavage and poly 60.3 33 0.00071 31.9 6.5 122 7-134 56-200 (764)
56 cd07187 YvcK_like family of mo 48.6 37 0.00081 28.4 4.8 67 101-169 152-220 (308)
57 PF09370 TIM-br_sig_trns: TIM- 48.3 72 0.0016 26.2 6.2 73 104-180 153-236 (268)
58 TIGR01826 CofD_related conserv 47.6 42 0.00091 28.2 4.9 64 102-167 150-215 (310)
59 COG3946 VirJ Type IV secretory 45.0 58 0.0013 28.5 5.4 64 104-170 263-338 (456)
60 PRK13681 hypothetical protein; 44.3 5.9 0.00013 21.6 -0.4 10 1-10 24-33 (35)
61 PF07522 DRMBL: DNA repair met 42.7 29 0.00064 24.0 2.9 24 140-163 82-105 (110)
62 smart00846 Gp_dh_N Glyceraldeh 42.7 51 0.0011 24.4 4.3 38 123-168 86-123 (149)
63 PF08915 tRNA-Thr_ED: Archaea- 39.7 83 0.0018 23.1 4.8 27 144-170 59-88 (138)
64 PF02126 PTE: Phosphotriestera 39.6 58 0.0013 27.3 4.6 46 144-196 168-215 (308)
65 PTZ00175 diphthine synthase; P 38.7 1.2E+02 0.0026 24.8 6.3 25 109-133 11-35 (270)
66 PF01073 3Beta_HSD: 3-beta hyd 38.1 1E+02 0.0022 25.2 5.8 58 106-164 49-115 (280)
67 TIGR00067 glut_race glutamate 37.1 35 0.00076 27.5 2.9 32 104-135 25-72 (251)
68 PF10087 DUF2325: Uncharacteri 36.5 1.1E+02 0.0023 20.5 4.9 53 118-179 42-94 (97)
69 cd07186 CofD_like LPPG:FO 2-ph 36.0 64 0.0014 27.0 4.2 67 101-169 159-228 (303)
70 KOG2535 RNA polymerase II elon 35.1 35 0.00076 29.2 2.6 60 138-198 265-324 (554)
71 COG3845 ABC-type uncharacteriz 34.3 88 0.0019 28.0 5.0 61 98-164 128-198 (501)
72 KOG1138 Predicted cleavage and 34.2 76 0.0016 28.7 4.5 55 76-132 203-266 (653)
73 PF02593 dTMP_synthase: Thymid 33.6 1.7E+02 0.0037 23.2 6.1 41 117-164 44-84 (217)
74 PF01339 CheB_methylest: CheB 32.8 46 0.00099 25.5 2.8 40 156-199 26-65 (182)
75 COG1735 Php Predicted metal-de 31.6 1.1E+02 0.0023 25.8 4.8 44 146-195 179-224 (316)
76 PF06057 VirJ: Bacterial virul 31.5 1E+02 0.0022 24.0 4.4 64 104-170 5-80 (192)
77 KOG2145 Cytoplasmic tryptophan 31.4 53 0.0012 27.5 3.0 49 120-169 111-161 (397)
78 PRK11889 flhF flagellar biosyn 29.9 1.7E+02 0.0036 25.9 5.9 48 124-174 320-367 (436)
79 COG0595 mRNA degradation ribon 27.7 3.6E+02 0.0078 24.7 7.9 94 104-201 329-428 (555)
80 PF03527 RHS: RHS protein; In 25.7 21 0.00046 20.3 -0.1 14 8-22 1-14 (41)
81 KOG1136 Predicted cleavage and 25.5 2.2E+02 0.0049 24.4 5.7 57 140-200 389-445 (501)
82 KOG2781 U3 small nucleolar rib 24.8 1.4E+02 0.003 24.3 4.2 57 104-164 84-140 (290)
83 PRK00865 glutamate racemase; P 24.6 88 0.0019 25.3 3.2 32 104-135 32-78 (261)
84 cd07044 CofD_YvcK Family of Co 24.5 1.2E+02 0.0026 25.4 4.1 63 102-166 151-216 (309)
85 PRK05703 flhF flagellar biosyn 24.4 1.7E+02 0.0037 25.6 5.2 51 144-198 346-396 (424)
86 PF13460 NAD_binding_10: NADH( 23.7 87 0.0019 23.1 2.9 52 108-163 45-96 (183)
87 smart00854 PGA_cap Bacterial c 23.1 3.2E+02 0.0069 21.5 6.2 47 117-163 25-80 (239)
88 COG0391 Uncharacterized conser 22.7 2.4E+02 0.0052 23.9 5.4 67 102-169 166-234 (323)
89 COG0796 MurI Glutamate racemas 22.4 1E+02 0.0022 25.3 3.1 32 104-135 32-78 (269)
90 PF13082 DUF3931: Protein of u 22.2 52 0.0011 19.8 1.1 8 158-165 50-57 (66)
91 cd03829 Sina Seven in absentia 21.9 1E+02 0.0022 22.2 2.7 39 96-134 65-109 (127)
92 KOG1137 mRNA cleavage and poly 21.9 2.5E+02 0.0053 25.8 5.5 25 140-164 396-420 (668)
93 COG4175 ProV ABC-type proline/ 21.7 4.5E+02 0.0098 22.6 6.8 67 120-200 178-246 (386)
94 PRK14721 flhF flagellar biosyn 21.4 2E+02 0.0043 25.3 4.9 50 145-198 316-365 (420)
95 COG2224 AceA Isocitrate lyase 21.4 1.7E+02 0.0036 25.7 4.3 44 120-171 279-325 (433)
96 PF00448 SRP54: SRP54-type pro 20.8 2.8E+02 0.006 21.3 5.2 52 143-198 128-179 (196)
97 PF00919 UPF0004: Uncharacteri 20.7 1.7E+02 0.0036 19.9 3.5 54 123-178 35-90 (98)
98 COG1419 FlhF Flagellar GTP-bin 20.6 2.3E+02 0.005 24.8 5.1 78 118-199 275-378 (407)
99 KOG4584 Uncharacterized conser 20.5 48 0.001 27.7 0.9 24 112-135 287-310 (348)
100 COG4892 Predicted heme/steroid 20.3 1.8E+02 0.0039 18.8 3.3 14 188-201 18-31 (81)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=6.3e-35 Score=236.00 Aligned_cols=181 Identities=35% Similarity=0.544 Sum_probs=147.2
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I 84 (202)
-+|||.|.||++||+.++.+. +.++++||||+++.+.+++...+.+.+. .+++ .+.++++++++ +++++++++|
T Consensus 70 I~lTH~H~DH~~gl~~l~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~i 144 (252)
T PRK02113 70 VLITHEHYDHVGGLDDLRPFC--RFGEVPIYAEQYVAERLRSRMPYCFVEH-SYPG--VPNIPLREIEPDRPFLVNHTEV 144 (252)
T ss_pred EEECCCChhhhCCHHHHHHhc--cCCCceEEECHHHHHHHHhhCCeeeccC-CCCC--CcceeeEEcCCCCCEEECCeEE
Confidence 469999999999999997653 4578999999999999988766544322 1222 12466777764 7899999999
Q ss_pred EEEEecCCCCceeeeEEEccEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 85 TPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++++++|+. .+++||++++++|++||++++++.+++++++|+||+||++. ...++|+++++++++++++++|+++|||
T Consensus 145 ~~~~~~H~~-~~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~-~~~~~H~t~~~a~~~~~~~~~k~l~l~H 222 (252)
T PRK02113 145 TPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALRI-APHPTHQSLEEALENIKRIGAKETYLIH 222 (252)
T ss_pred EEEEecCCC-ccEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhcC-CCCCCcCCHHHHHHHHHHhCCCEEEEEc
Confidence 999999974 38999999999999999988777889999999999999874 3568999999999999999999999999
Q ss_pred CCCCCC-hHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 165 MMHLMD-HEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 165 l~~~~~-~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
+++++. .+++.++ ...++.+|+|||++++
T Consensus 223 ~s~~~~~~~~~~~~-------~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 223 MSHHIGLHADVEKE-------LPPHVHFAYDGLEIIF 252 (252)
T ss_pred ccccchhHHHHHHh-------CCCCceeccCceEEeC
Confidence 999873 3333322 2236899999999964
No 2
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=1.1e-34 Score=240.65 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=143.4
Q ss_pred cchhhhhccccCChhhhhhh--hccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCE
Q 028873 6 STIALFVGFLPMGLDDLRDW--TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDL 82 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~--~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (202)
-+|||+|+||+.||+.|... ...+.++++||||+++.+.++..+.+... ++. ..++++++.+ +.++.+++
T Consensus 58 IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~----~~~---~~~~~~~i~~~~~~~~~~~ 130 (303)
T TIGR02649 58 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGS----WTD---YPLEIVEIGAGEILDDGLR 130 (303)
T ss_pred EEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhccc----ccC---CceEEEEcCCCceEecCCe
Confidence 47999999999999998643 23456789999999998887764332110 011 1355677754 66777899
Q ss_pred EEEEEEecCCCCceeeeEEEc------------------------------------------------------cEEEe
Q 028873 83 KITPLPVWHGAGYRSLGFRFG------------------------------------------------------NICYI 108 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~gy~i~------------------------------------------------------~~~y~ 108 (202)
+|++++++|+. +|+||+|+ +++|+
T Consensus 131 ~v~~~~~~H~~--~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~ 208 (303)
T TIGR02649 131 KVTAYPLEHPL--ECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIF 208 (303)
T ss_pred EEEEEEccCcc--ceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEe
Confidence 99999999987 99999994 48999
Q ss_pred CCCCCCCcchhhhccCCCEEEEeccCCCC-----CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCCh---HHHHHHHhh
Q 028873 109 SDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH---EKVNEELLK 180 (202)
Q Consensus 109 ~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~---~~~~~~~~~ 180 (202)
|||++.+ +++++++|+|+||+||+|.+. ..++|+|+++|+++|+++++|+++|||++++++. +++.+++++
T Consensus 209 gDt~~~~-~~~~~~~~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~ 287 (303)
T TIGR02649 209 GDTGPCD-AALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRS 287 (303)
T ss_pred cCCCChH-HHHHHhcCCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHH
Confidence 9999864 789999999999999999753 2489999999999999999999999999999853 344455554
Q ss_pred ccccCCCcEEEeecCeEEee
Q 028873 181 LMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 181 ~~~~~~~~v~~A~DG~~i~l 200 (202)
.+. ++.+|+|||++.+
T Consensus 288 ---~~~-~~~~a~d~~~~~~ 303 (303)
T TIGR02649 288 ---IFP-ATELANDFTVFNV 303 (303)
T ss_pred ---HCC-CCEecccccEEeC
Confidence 243 6899999999875
No 3
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=1.3e-33 Score=233.43 Aligned_cols=181 Identities=21% Similarity=0.250 Sum_probs=143.8
Q ss_pred cchhhhhccccCChhhhhhhh--ccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-C-ceEeCC
Q 028873 6 STIALFVGFLPMGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-E-PFTVQD 81 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~--~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 81 (202)
-+|||+|.||+.||+.+.... .++.++++||||+++.+.++..+.+.... . ...++++++.+ + .++.++
T Consensus 55 IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~ 127 (299)
T TIGR02651 55 IFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTY----L---NYPIKIHEIEEGGLVFEDDG 127 (299)
T ss_pred EEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHcccC----C---CceEEEEEccCCCceEecCC
Confidence 479999999999999987532 24456899999999988877643322111 1 11356677754 4 588899
Q ss_pred EEEEEEEecCCCCceeeeEEEc------------------------------------------------------cEEE
Q 028873 82 LKITPLPVWHGAGYRSLGFRFG------------------------------------------------------NICY 107 (202)
Q Consensus 82 ~~I~~~~v~H~~~~~~~gy~i~------------------------------------------------------~~~y 107 (202)
++|+++++.|+. +|+||+|+ +++|
T Consensus 128 ~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y 205 (299)
T TIGR02651 128 FKVEAFPLDHSI--PSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAY 205 (299)
T ss_pred EEEEEEEcCCCC--ceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEE
Confidence 999999999987 89999985 5999
Q ss_pred eCCCCCCCcchhhhccCCCEEEEeccCCCC-----CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCC-hHHHHHHHhhc
Q 028873 108 ISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD-HEKVNEELLKL 181 (202)
Q Consensus 108 ~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~-~~~~~~~~~~~ 181 (202)
+|||++.+ +++++++|+|+||+||+|.+. ..++|+++++++++++++++|+++|||++++++ .+++.+++++
T Consensus 206 ~gDt~~~~-~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~- 283 (299)
T TIGR02651 206 TGDTRPCE-EVIEFAKNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKK- 283 (299)
T ss_pred ecCCCChH-HHHHHHcCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHH-
Confidence 99999875 688999999999999999863 248999999999999999999999999999874 4444444443
Q ss_pred cccCCCcEEEeecCeEEee
Q 028873 182 METEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 182 ~~~~~~~v~~A~DG~~i~l 200 (202)
.. .++.+|+|||++++
T Consensus 284 --~~-~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 284 --IF-PNTYIAEDFMEIEI 299 (299)
T ss_pred --hC-CCcEEccCccEeeC
Confidence 23 38999999999975
No 4
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.98 E-value=1.5e-31 Score=221.49 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=135.3
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeC---C
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQ---D 81 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~ 81 (202)
-+|||+|+|||.||+.|+ +..+|+||||+++.+.+++.+++.... .. .+.++++++.+ ++++++ +
T Consensus 84 v~lTH~H~DHi~Gl~~l~-----~~~~l~Vyg~~~~~~~l~~~~~~f~~~-----~~-~~~~~~~~i~~~~~~~i~~~~~ 152 (302)
T PRK05184 84 VVLTDGQIDHTTGLLTLR-----EGQPFPVYATPAVLEDLSTGFPIFNVL-----DH-YGGVQRRPIALDGPFAVPGLPG 152 (302)
T ss_pred EEEeCCchhhhhChHhhc-----cCCCeEEEeCHHHHHHHHhcCCccccc-----cc-ccceeeEEecCCCceEecCCCC
Confidence 379999999999999884 367999999999999888755532111 10 12467777764 678886 8
Q ss_pred EEEEEEEecCCC-----------CceeeeEEEc------cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCC-------
Q 028873 82 LKITPLPVWHGA-----------GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR------- 137 (202)
Q Consensus 82 ~~I~~~~v~H~~-----------~~~~~gy~i~------~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~------- 137 (202)
++|+++++.|+. +.+|+||||+ +++|++|+...+++++++++|+|+||+||++...
T Consensus 153 ~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~~~~~~~g 232 (302)
T PRK05184 153 LRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTDDEMIRAG 232 (302)
T ss_pred cEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcCHHHHhcc
Confidence 999999998752 1379999993 7999999977778899999999999999985321
Q ss_pred ------CCCCCCCHH---HHHHHHHHcCCCEEEEecCCCCCCh---H-HHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 138 ------SSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMDH---E-KVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 138 ------~~~~H~~~~---ea~~~~~~~~~k~lvltHl~~~~~~---~-~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
...+|++++ ++++.+.++++||++|||++|.++. . +++++++. . ++++|||||+|+|
T Consensus 233 ~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~~~~~~~~----~--~~~~A~DGm~i~l 302 (302)
T PRK05184 233 VGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSPERAELEA----A--GIEVAHDGMEIEL 302 (302)
T ss_pred cCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCHHHHHHHh----C--CCEEccCCcEEeC
Confidence 135788865 5688888889999999999986532 1 23333332 2 6899999999975
No 5
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=220.07 Aligned_cols=190 Identities=18% Similarity=0.120 Sum_probs=131.4
Q ss_pred chhhhhccccCChhhhhhhh--ccCCCceeeeeCHHHHHHHHhcCceeee-cCC---CCCCCcccceEEEe--eC----C
Q 028873 7 TIALFVGFLPMGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVD-TSG---IIPGAAVSELQFNI--ID----E 74 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~--~~~~~~l~iy~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~--~~----~ 74 (202)
+|||+|+|||.||+.|...+ ..+..|+.||||++..+.+......... ..+ ..+.. ...+.+.. ++ .
T Consensus 58 fITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~-~~~~~v~~~~~~h~~~~ 136 (292)
T COG1234 58 FITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIE-EDAFEVEALELDHGVPA 136 (292)
T ss_pred EeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEec-cCceEEEEEecCCCccc
Confidence 79999999999999987643 3445589999999887766553211000 000 00000 00011111 00 0
Q ss_pred ------CceEeC------------CEEEEEEEecCCCC--ceeeeEEEc------cEEEeCCCCCCCcchhhhccCCCEE
Q 028873 75 ------EPFTVQ------------DLKITPLPVWHGAG--YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEIL 128 (202)
Q Consensus 75 ------~~~~~~------------~~~I~~~~v~H~~~--~~~~gy~i~------~~~y~~Dt~~~~~~~~~~~~~~DlL 128 (202)
+....+ +..++.+++.|+.. ..+.++++. +++|+|||++++ +++++++|||+|
T Consensus 137 ~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~-~~~~~a~~aDlL 215 (292)
T COG1234 137 LGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCD-ELIDLAKGADLL 215 (292)
T ss_pred cceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCH-HHHHHhcCCCEE
Confidence 011112 57788888888720 156666665 799999999996 699999999999
Q ss_pred EEeccCCCC----CC-CCCCCHHHHHHHHHHcCCCEEEEecCCCCCC--hHHHHHHHhhccccCCCcEEEeecCeEEeec
Q 028873 129 IMDALRPDR----SS-STHFGLPRALEEVRKIQPKRTLFIGMMHLMD--HEKVNEELLKLMETEGLDVQLSYDGLRVPVM 201 (202)
Q Consensus 129 i~e~~~~~~----~~-~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~--~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l~ 201 (202)
||||++.+. .. .+|+|.+||+++|+++|+|+++|||+|++++ .+++.+++++. +.+++.+|+|||++++.
T Consensus 216 iHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~~~~ea~~~---f~~~~~~a~D~~~~~v~ 292 (292)
T COG1234 216 IHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYPKDDEELLKEARAI---FPGETIVARDGLVFEVP 292 (292)
T ss_pred EEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccccchHHHHHHHHHHh---CCCceEEeccceEEecC
Confidence 999999763 22 3499999999999999999999999999994 55555555542 44369999999999863
No 6
>PRK02126 ribonuclease Z; Provisional
Probab=99.97 E-value=3e-30 Score=215.79 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=129.7
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-eeeecCCCCCCCcccceEEEeeC-----------
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-YLVDTSGIIPGAAVSELQFNIID----------- 73 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------- 73 (202)
-+|||.|+||++|++.|+.+...+.++++||||+++.+.++..+. |.+.....+ .+.+.++.++
T Consensus 51 I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 126 (334)
T PRK02126 51 IFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENY----PTTFRVHEVELHDGRIRRALF 126 (334)
T ss_pred EEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhccccccCcccC----CCceEEEEEEccCccceeeee
Confidence 479999999999999998776566789999999999999888654 322110000 0112221110
Q ss_pred ------------------CCceEeCCEEEEEEEecCCCCceeeeEEEc--------------------------------
Q 028873 74 ------------------EEPFTVQDLKITPLPVWHGAGYRSLGFRFG-------------------------------- 103 (202)
Q Consensus 74 ------------------~~~~~~~~~~I~~~~v~H~~~~~~~gy~i~-------------------------------- 103 (202)
+..++.++++|++++++|+. ||+||+|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v--p~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~ 204 (334)
T PRK02126 127 SCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI--PCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLR 204 (334)
T ss_pred cccccccccccccccCCCCeEEeCCCEEEEEEEccCCC--ceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhc
Confidence 12356789999999999998 99999995
Q ss_pred ---------------------------------------cEEEeCCCCCCCc---chhhhccCCCEEEEeccCCCC----
Q 028873 104 ---------------------------------------NICYISDVSEIPE---ETYPFLQDCEILIMDALRPDR---- 137 (202)
Q Consensus 104 ---------------------------------------~~~y~~Dt~~~~~---~~~~~~~~~DlLi~e~~~~~~---- 137 (202)
+++|+|||++.++ .+.++++|+|+||+||+|.++
T Consensus 205 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~ 284 (334)
T PRK02126 205 GEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVELAAGVDLLFIEAVFLDEDAEK 284 (334)
T ss_pred cCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHHHHcCCCEEEEEcccChHHhhh
Confidence 4999999998874 477899999999999999863
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCC--hHHHHHHHh
Q 028873 138 -SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD--HEKVNEELL 179 (202)
Q Consensus 138 -~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~--~~~~~~~~~ 179 (202)
..++|+++++++++|+++++|+++|||++|++. .+++.++++
T Consensus 285 a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~~~~~l~~e~~ 329 (334)
T PRK02126 285 ARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQGRGAELYREAR 329 (334)
T ss_pred cccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCCcHHHHHHHHH
Confidence 347999999999999999999999999999984 234444444
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=208.00 Aligned_cols=171 Identities=26% Similarity=0.460 Sum_probs=130.8
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEE-EeeC-CCceEeCCEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NIID-EEPFTVQDLK 83 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 83 (202)
-+|||+|.||+.||+.++ ..+.++++||+|+++.. +.+.+.+ ++ .+++ ..++ ++++++++++
T Consensus 70 i~iTH~H~DHi~gl~~l~---~~~~~~i~i~~~~~~~~-~~~~~~~--------~~----~~~~~~~l~~~~~~~~~~~~ 133 (250)
T PRK11244 70 ILLTHYHMDHVQGLFPLR---WGVGDPIPVYGPPDPEG-CDDLFKH--------PG----ILDFSHPLEPFEPFDLGGLQ 133 (250)
T ss_pred EEEccCchhhhccHHHHH---hhcCCceeEEeCCchhh-HHHHhcC--------cc----ccccccccCCCCCeeECCEE
Confidence 469999999999998764 23457899999987642 2222211 11 1222 2343 3789999999
Q ss_pred EEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhhc--cCCCEEEEeccCCCC--CCCCCCCHHHHHHHHHHc
Q 028873 84 ITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPRALEEVRKI 155 (202)
Q Consensus 84 I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~--~~~DlLi~e~~~~~~--~~~~H~~~~ea~~~~~~~ 155 (202)
|+++|+.|+. +++||+|+ +++|+|||+++++.+.+++ +++|+|++||++.+. ..++|+++++++++++++
T Consensus 134 I~~~~~~H~~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~~~a~~~ 211 (250)
T PRK11244 134 VTPLPLNHSK--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTALAIIEVL 211 (250)
T ss_pred EEEEeeCCCc--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHHHHHHhc
Confidence 9999999987 89999998 8999999998876666665 589999999999754 357899999999999999
Q ss_pred CCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 156 QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 156 ~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
++|++++||++++++ ++..+.+ ....++.+|+|||+++|
T Consensus 212 ~~k~lvltH~~~~~~--~~~~~~~----~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 212 RPPRVILTHISHQLD--AWLMENA----ALPSGVEVAYDGMEIGL 250 (250)
T ss_pred CCceEEEEcccCCcc--hhhhhhh----hcCCceEEecCccEeeC
Confidence 999999999998764 2222222 12247999999999975
No 8
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.97 E-value=2.5e-29 Score=207.79 Aligned_cols=176 Identities=18% Similarity=0.275 Sum_probs=132.4
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEe-----
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTV----- 79 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----- 79 (202)
-++||.|.||+.||+.|+ ++.+|+||+++++++.|++ ++ .+... +. ..++++.++. +++.+
T Consensus 83 I~lTH~H~DHi~GL~~L~-----~~~~lpVya~~~t~~~L~~-~~-~~~~~---~~---~~~~~~~i~~~~~~~~~~~~~ 149 (302)
T TIGR02108 83 VVLTDGEIDHTTGLLTLR-----EGQPFTLYATEMVLQDLSD-NP-IFNVL---DH---WNVRRQPIALNEKFEFRIVAR 149 (302)
T ss_pred EEEeCCCcchhhCHHHHc-----CCCCceEEECHHHHHHHHh-CC-Ccccc---ch---hhccceEecCCCcEEeccccc
Confidence 479999999999999985 3469999999999999976 43 22210 10 1233454543 55655
Q ss_pred CCEEEEEEEec--------C--C-C-CceeeeEEEc------cEEEeCCCCCCCcchhhhccCCCEEEEeccC-CCC---
Q 028873 80 QDLKITPLPVW--------H--G-A-GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALR-PDR--- 137 (202)
Q Consensus 80 ~~~~I~~~~v~--------H--~-~-~~~~~gy~i~------~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~-~~~--- 137 (202)
++++|++++++ | + . +.+++||+|+ +++|+||++.++++++++++++|+||+||++ .+.
T Consensus 150 ~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~~~d~e~l 229 (302)
T TIGR02108 150 PGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTLWRDDEMI 229 (302)
T ss_pred CCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCCCCcHHHH
Confidence 36999999999 5 2 2 1489999997 3999999999999999999999999999984 321
Q ss_pred ---------CCCCCCCHH---HHHHHHHHcCCCEEEEecCCCCC---C-hHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 138 ---------SSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLM---D-HEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 138 ---------~~~~H~~~~---ea~~~~~~~~~k~lvltHl~~~~---~-~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
...+|++.+ ++++.+.+.++++++|||+++.+ + +....++++. . ++++|||||+|++
T Consensus 230 ~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~~~~~~~~----~--~~~~ayDG~~~~l 302 (302)
T TIGR02108 230 RAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSPERAEVEA----A--GWEVAYDGMEIVL 302 (302)
T ss_pred hcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCHHHHHHHH----c--CCEEecCCcEEeC
Confidence 246788776 66666677899999999999987 3 3344444453 2 7999999999975
No 9
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.96 E-value=4.4e-29 Score=200.35 Aligned_cols=169 Identities=28% Similarity=0.501 Sum_probs=128.1
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEE-eeC-CCceEeCCEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFN-IID-EEPFTVQDLK 83 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 83 (202)
-+|||.|.||+.||+.++ + .+.++++||+|+++.. +...+.+ ++ ..++. .+. ++++++++++
T Consensus 60 i~iTH~H~DHi~gl~~l~-~--~~~~~~~v~~~~~~~~-~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~ 123 (238)
T TIGR03307 60 ILLTHYHMDHVQGLFPLR-W--GVGEPIPVYGPPDEEG-CDDLFKH--------PG----ILDFSKPLEAFEPFDLGGLR 123 (238)
T ss_pred EEEecCchhhhcchHHHH-H--hcCCceeEEeCchHhh-HHHHhcC--------cc----cccccccccCCceEEECCEE
Confidence 469999999999998774 2 3456899999998743 2222211 11 01121 233 3788899999
Q ss_pred EEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhhcc--CCCEEEEeccCCCC--CCCCCCCHHHHHHHHHHc
Q 028873 84 ITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR--SSSTHFGLPRALEEVRKI 155 (202)
Q Consensus 84 I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~--~~DlLi~e~~~~~~--~~~~H~~~~ea~~~~~~~ 155 (202)
|+++|+.|+. +++||+|+ +++|+|||.++++.++++++ ++|+||+||++... ..++|+++++++++++++
T Consensus 124 i~~~~~~H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~ 201 (238)
T TIGR03307 124 VTPLPLVHSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQL 201 (238)
T ss_pred EEEEecCCCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHc
Confidence 9999999987 89999998 89999999988777777776 79999999998643 347899999999999999
Q ss_pred CCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 156 QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 156 ~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
+++++++||+++.++. .+.+ ... ...++.+|+|||+|
T Consensus 202 ~~~~lil~H~~~~~~~-~~~~-~~~----~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 202 RPKQVILTHISHQLDA-WLME-NPD----LPSGVAVGYDGQTL 238 (238)
T ss_pred CCCEEEEEecccccch-HHHh-hhh----cCCceEEecccccC
Confidence 9999999999987742 1211 111 11279999999985
No 10
>PRK00055 ribonuclease Z; Reviewed
Probab=99.95 E-value=8.9e-28 Score=195.41 Aligned_cols=184 Identities=17% Similarity=0.123 Sum_probs=127.1
Q ss_pred cchhhhhccccCChhhhhhhh--ccCCCceeeeeCHHHHHHHHhcC------ceeeecCCCCCCCcccceEEE-----ee
Q 028873 6 STIALFVGFLPMGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTH------YYLVDTSGIIPGAAVSELQFN-----II 72 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~--~~~~~~l~iy~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~ 72 (202)
-+|||+|.||+.||+.+...+ .++.++++||||+++.+.++... .|.+.... .+. .++.. .+
T Consensus 57 i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~ 131 (270)
T PRK00055 57 IFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKD-KPG----KLDAEKLKALGV 131 (270)
T ss_pred EEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcC-CCC----CCCHHHHHHCCC
Confidence 479999999999999987432 23567999999999887665421 22221100 000 01000 00
Q ss_pred CC-Cce-Ee-CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCC-----CCC
Q 028873 73 DE-EPF-TV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSS 140 (202)
Q Consensus 73 ~~-~~~-~~-~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~~~ 140 (202)
.+ ..+ ++ .+.++.. ..|....+++||+++ +++|+|||++.+ +++++++++|+||+||++.+. ..+
T Consensus 132 ~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~-~~~~~~~~~d~li~E~~~~~~~~~~~~~~ 208 (270)
T PRK00055 132 PPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPRKGRKVAYCGDTRPCE-ALVELAKGADLLVHEATFGDEDEELAKEY 208 (270)
T ss_pred CCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCCCCcEEEEeCCCCCcH-HHHHHhCCCCEEEEeccCCcchhhHHhhc
Confidence 00 000 01 1122221 123211268999997 799999999885 688999999999999999764 147
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCCCCC--hHHHHHHHhhccccCCCcEEEeecCeEEeec
Q 028873 141 THFGLPRALEEVRKIQPKRTLFIGMMHLMD--HEKVNEELLKLMETEGLDVQLSYDGLRVPVM 201 (202)
Q Consensus 141 ~H~~~~ea~~~~~~~~~k~lvltHl~~~~~--~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l~ 201 (202)
+|+++++++++++++++|++++||++++++ ++++.+++++. . .++.+|+|||+|+|+
T Consensus 209 ~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~---~-~~v~~a~Dg~~i~l~ 267 (270)
T PRK00055 209 GHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREI---F-PNTELAEDLMRVEVP 267 (270)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHH---c-CCcEEccCCcEEEec
Confidence 899999999999999999999999999884 55666666542 3 389999999999985
No 11
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.94 E-value=2.6e-26 Score=185.26 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=119.9
Q ss_pred ccchhhhhccccCChhhhhh---hhccCCCceeeeeCHHHHHHHHhcCcee--eecCCCCCCCcccceEEEeeCC-CceE
Q 028873 5 FSTIALFVGFLPMGLDDLRD---WTNNVQRHIPIYVAMRDFEVMKKTHYYL--VDTSGIIPGAAVSELQFNIIDE-EPFT 78 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~---~~~~~~~~l~iy~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (202)
.-+|||.|.||++||+.+.. +...+.+|++||+|+++.+.++.....+ +.+. . ...+++...++ +.+.
T Consensus 43 ~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~----~--~~~~~~~~~~~~e~~~ 116 (277)
T TIGR02650 43 VFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAANED----L--FFFFNHHLEEEDERFF 116 (277)
T ss_pred EEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHhhhh----h--ccCcccCCCCCCcEEE
Confidence 56899999999999987654 2234667999999999777666321111 1111 0 11234444444 3334
Q ss_pred eC----CEEEEEEEecCCC-CceeeeEEEc------------------------------------cEEEeCCCCCCCcc
Q 028873 79 VQ----DLKITPLPVWHGA-GYRSLGFRFG------------------------------------NICYISDVSEIPEE 117 (202)
Q Consensus 79 ~~----~~~I~~~~v~H~~-~~~~~gy~i~------------------------------------~~~y~~Dt~~~~~~ 117 (202)
.. .+.|+++++.|.. .++|+||.|. +++|+|||.+++.
T Consensus 117 ~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~- 195 (277)
T TIGR02650 117 LDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD- 195 (277)
T ss_pred eecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh-
Confidence 43 3899999999984 3589999984 4999999998863
Q ss_pred hhhhccCCCEEEEeccCCCC---CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHH
Q 028873 118 TYPFLQDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKV 174 (202)
Q Consensus 118 ~~~~~~~~DlLi~e~~~~~~---~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~ 174 (202)
++++|||+|||||||.+. ..++|++..|++++|+++++++++|||+++++..+.+
T Consensus 196 --~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry~~~~~ 253 (277)
T TIGR02650 196 --EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHISRRIIRIL 253 (277)
T ss_pred --HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCCCEEEEEeecccccHHHH
Confidence 788999999999999864 2368999999999999999999999999999854443
No 12
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.90 E-value=4.6e-23 Score=159.59 Aligned_cols=147 Identities=24% Similarity=0.330 Sum_probs=114.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhc-CceeeecCCCCCCCcccceEEEeeCC-CceEeCCE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT-HYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDL 82 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (202)
.-+|||.|.||+.||+.+......... +||||+++.+.+++. ... ... ++. ....+++.+.+ +.++++++
T Consensus 32 ~v~iTH~H~DH~~gl~~l~~~~~~~~~--~i~~~~~~~~~l~~~~~~~--~~~--~~~--~~~~~~~~~~~~~~~~~~~~ 103 (194)
T PF12706_consen 32 AVFITHSHPDHIAGLPSLIPAWAKHPK--PIYGPPETKEFLREYKFGI--LDL--YPE--EDNFDIIEISPGDEFEIGDF 103 (194)
T ss_dssp EEE-SBSSHHHHTTHHHHHHHHHHCTT--EEEECHHHHHHHHHHHHTH--HTT--CCT--TSGEEEEEECTTEEEEETTE
T ss_pred EEEECCCCccccCChHHHHHHhhcccc--eEEecHHHHHHHHhhhccc--ccc--ccc--ccceeEEEeccCceEEeceE
Confidence 357999999999999999876433222 999999999988831 111 000 011 12456677754 68999999
Q ss_pred EEEEEEecCCCCceeee----EEEc----cEEEeCCCCCCCcchhhhccCCCEEEEeccCCC------CCCCCCCCHHHH
Q 028873 83 KITPLPVWHGAGYRSLG----FRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPD------RSSSTHFGLPRA 148 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~g----y~i~----~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~------~~~~~H~~~~ea 148 (202)
+|+++|+.|.. ++.+ |+|+ +++|+||+.+ . ++.++++|++++||++.. ...+.|++++++
T Consensus 104 ~i~~~~~~H~~--~~~~~~~g~~i~~~~~~i~~~gD~~~-~---~~~~~~~D~li~~~~~~~~~~~~~~~~~~h~~~~~~ 177 (194)
T PF12706_consen 104 RITPFPANHGP--PSYGGNKGFVIEPDGKKIFYSGDTNY-D---FEELKNIDLLILECGYIDEEEEPPARGPGHMTLEEA 177 (194)
T ss_dssp EEEEEEEESSS--CCEEECCEEEEEETTEEEEEETSSSS-C---HHHHTTBSEEEEEBCBSSGGHHCHHCCTTSBBHHHH
T ss_pred EEEEEeccccc--cccccCceEEEecCCcceEEeeccch-h---hhhhccCCEEEEeCCCcchhhcccccCCCCCCHHHH
Confidence 99999999988 5554 9998 8999999998 2 355599999999999983 245899999999
Q ss_pred HHHHHHcCCCEEEEecC
Q 028873 149 LEEVRKIQPKRTLFIGM 165 (202)
Q Consensus 149 ~~~~~~~~~k~lvltHl 165 (202)
++++++.++|+++++|+
T Consensus 178 ~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 178 LELAKELKAKKVILIHF 194 (194)
T ss_dssp HHHHHHHTTSEEEEESB
T ss_pred HHHHHHcCCCEEEEECC
Confidence 99999999999999996
No 13
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.85 E-value=3.3e-20 Score=147.64 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=124.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
+-.|||.|.||+.|+..+.. ...+++|+++++.+.+++. + + + ++++++ ++++++++++
T Consensus 43 ~vliTH~H~DH~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~-~--~------~-------~~~~~~~~~~~~~~~~~ 101 (228)
T PRK00685 43 YILLTHGHGDHLGDTVEIAK-----RTGATVIANAELANYLSEK-G--V------E-------KTHPMNIGGTVEFDGGK 101 (228)
T ss_pred EEEeCCCCccccccHHHHHH-----hCCCEEEEeHHHHHHHHhc-C--C------C-------ceeeccCCCcEEECCEE
Confidence 34799999999999876531 2468899999887766542 1 0 0 244554 3678999999
Q ss_pred EEEEEecCCCCc----------eeeeEEEc----cEEEeCCCCCCCcchhhh--ccCCCEEEEeccCCCCCCCCCCCHHH
Q 028873 84 ITPLPVWHGAGY----------RSLGFRFG----NICYISDVSEIPEETYPF--LQDCEILIMDALRPDRSSSTHFGLPR 147 (202)
Q Consensus 84 I~~~~v~H~~~~----------~~~gy~i~----~~~y~~Dt~~~~~~~~~~--~~~~DlLi~e~~~~~~~~~~H~~~~e 147 (202)
|+++|+.|+... .++||+|+ +++|+|||+++++ +..+ ..++|++++.+. ...||+.+|
T Consensus 102 i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~-~~~~~~~~~~D~~~~~~~-----~~~h~~~~e 175 (228)
T PRK00685 102 VKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSD-MKLIGELHKPDVALLPIG-----DNFTMGPED 175 (228)
T ss_pred EEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhH-HHHHHHhhCCCEEEEecC-----CccccCHHH
Confidence 999999997621 16999997 8999999998863 3332 357999998652 257999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC----CChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 148 ALEEVRKIQPKRTLFIGMMHL----MDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 148 a~~~~~~~~~k~lvltHl~~~----~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
|+++++++++|++++||++-. .+.+++.+++++ .+.++.++.+|+.++|
T Consensus 176 a~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 176 AALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG----LGTKVVILKPGESIEL 228 (228)
T ss_pred HHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh----cCCcEEECCCCCEeeC
Confidence 999999999999999999632 245666666654 4458999999999875
No 14
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.83 E-value=1.5e-21 Score=171.60 Aligned_cols=182 Identities=17% Similarity=0.136 Sum_probs=129.4
Q ss_pred chhhhhccccCChhhhhh-hhc----cCCCceeeeeCHHHHHHHHhcC--ceeee---cCCCCCCCcccceEEEee----
Q 028873 7 TIALFVGFLPMGLDDLRD-WTN----NVQRHIPIYVAMRDFEVMKKTH--YYLVD---TSGIIPGAAVSELQFNII---- 72 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~-~~~----~~~~~l~iy~~~~~~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~~~~---- 72 (202)
+|||.|+||..||+.++. |.. ....|+-|.+|....++++... +.... .....++.- +.-+..
T Consensus 506 ~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~l---f~~~s~~s~~ 582 (746)
T KOG2121|consen 506 FISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGAL---FAQKSPDSVP 582 (746)
T ss_pred HHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhh---hhccCccccc
Confidence 699999999999999875 431 2456899999999999888733 11100 000001100 000001
Q ss_pred C---CCc-eEeCCEEEEEEEecCCCCceeeeEEEc-----cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCC-----C
Q 028873 73 D---EEP-FTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----S 138 (202)
Q Consensus 73 ~---~~~-~~~~~~~I~~~~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~ 138 (202)
+ ... -+.+...|..+|+.|-. .++|.+|. +++|+|||++.+ .+.+..+|+||||||||+.+. .
T Consensus 583 ~~~~~~~l~~~~l~~i~tc~viHCp--~syg~~i~~~~~~Ki~YSGDTrP~~-~~v~~g~datlLIHEAT~ED~l~EeAv 659 (746)
T KOG2121|consen 583 ERLLSYLLRELGLESIQTCPVIHCP--QSYGCSITHGSGWKIVYSGDTRPCE-DLVKAGKDATLLIHEATLEDDLEEEAV 659 (746)
T ss_pred hhhhhHHHHhcCceeEEecCcEecC--hhhceeEecccceEEEEcCCCCCch-hHhhhccCCceEEeehhhchhHHHHHH
Confidence 0 011 24578899999999987 89999997 899999999986 699999999999999999874 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
..+|+|.+||++.++++++|+++|||||+++..-.+-..-. -.++-+|.|+|.|..
T Consensus 660 ~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~pl~~d~~------~~~~~~afd~m~v~~ 715 (746)
T KOG2121|consen 660 EKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVPLPSDGE------MDPVCVAFDKMAVSV 715 (746)
T ss_pred HhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCCCCCccc------cchHHHhhhcceeec
Confidence 58999999999999999999999999999993111211000 014556777777764
No 15
>PRK04286 hypothetical protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=152.71 Aligned_cols=189 Identities=17% Similarity=0.182 Sum_probs=123.3
Q ss_pred cchhhhhccccCChhhhhhhh-ccCCCceeeeeCHHHHHH-HHhcCce--eeecCCCCCCCcccce-EEEee-CCCceEe
Q 028873 6 STIALFVGFLPMGLDDLRDWT-NNVQRHIPIYVAMRDFEV-MKKTHYY--LVDTSGIIPGAAVSEL-QFNII-DEEPFTV 79 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~-~~~~~~l~iy~~~~~~~~-l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 79 (202)
-+|||.|.|||.|+..++ |. ..++.++++|++..++.. ..+..+. .+.... ++.. ...+ ....+ +++.+++
T Consensus 69 IliTH~H~DHi~g~~~~~-y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-v~~~~~~~~~~~g~~~~i 145 (298)
T PRK04286 69 ITISHYHYDHHTPFYEDP-YELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPR-FLKA-VKDIAKKIEYADGKTFRF 145 (298)
T ss_pred EEecCCccccCCCccccc-cccccccchHHHhcCceecccCHHHHcCHHHHhhHHh-HHHH-HHhcCCceEECCCCEEEE
Confidence 368999999999987763 22 123457888888766531 1110110 000000 0000 0001 11223 3478999
Q ss_pred CCEEEEEE-EecCCCCceeeeEEE----c----cEEEeCCCC-CCCcchhhhcc--CCCEEEEecc--CCC-C---CCCC
Q 028873 80 QDLKITPL-PVWHGAGYRSLGFRF----G----NICYISDVS-EIPEETYPFLQ--DCEILIMDAL--RPD-R---SSST 141 (202)
Q Consensus 80 ~~~~I~~~-~v~H~~~~~~~gy~i----~----~~~y~~Dt~-~~~~~~~~~~~--~~DlLi~e~~--~~~-~---~~~~ 141 (202)
++++|++. +++|+...++.||++ + +++|+|||+ ..++++.++++ ++|+|+++|. +.+ . ...+
T Consensus 146 g~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~ 225 (298)
T PRK04286 146 GGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDL 225 (298)
T ss_pred CCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccH
Confidence 99999966 899976214666654 4 899999999 66777888887 9999999984 332 1 2356
Q ss_pred CCCHHHHHHHHHHcCCCEEEEe-cCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 142 HFGLPRALEEVRKIQPKRTLFI-GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 142 H~~~~ea~~~~~~~~~k~lvlt-Hl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
|++.+.+.++++. ++|+++|| |+|++++++++.+++.+.++..+..+..|-|-|-.
T Consensus 226 h~s~~~~~~l~~~-~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 282 (298)
T PRK04286 226 EKGIENLEEIVKN-TPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAAEFLGL 282 (298)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHHHHcCC
Confidence 7777777788777 99999999 99999999888777654433455567777766543
No 16
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.79 E-value=3.4e-19 Score=145.56 Aligned_cols=159 Identities=25% Similarity=0.265 Sum_probs=99.3
Q ss_pred chhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCEEEEE
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITP 86 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 86 (202)
++||.|+|||.|+++|+.++..................+.+.+++.+.... + ......++++++++
T Consensus 67 ~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~ 132 (269)
T COG1235 67 LLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRASTSDRLLGGFPYLFRHPF--P------------PFSLPAIGGLEVTP 132 (269)
T ss_pred EEecccHHhhcChHHHHHHhcCCcccccceecccchhhhhccchhhhcCCC--C------------ccccccccceeeec
Confidence 689999999999999998653211111111111121122333443332110 0 01222333344444
Q ss_pred EEecCCCC----------------ceeeeEEEc----cEEEeCCCCCCCcchhhhcc---CCCEEEEeccCCCC-CCCCC
Q 028873 87 LPVWHGAG----------------YRSLGFRFG----NICYISDVSEIPEETYPFLQ---DCEILIMDALRPDR-SSSTH 142 (202)
Q Consensus 87 ~~v~H~~~----------------~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~---~~DlLi~e~~~~~~-~~~~H 142 (202)
++++|... ..+.||+++ .++|++|+..+++.....+. ..++.+.++++.+. ...+|
T Consensus 133 ~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~~h 212 (269)
T COG1235 133 FPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLSNH 212 (269)
T ss_pred CCCCCccccCCCcccccCcccccccccceeeeeeeeccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCCCc
Confidence 44444321 246677655 78999999988764443443 46777778887664 34889
Q ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHh
Q 028873 143 FGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELL 179 (202)
Q Consensus 143 ~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~ 179 (202)
++++++.+++++.++||++|||+++.+++.++.+..+
T Consensus 213 ~~~~~a~~~~~~~~~~rivLtHls~~~~~~~~~~~~~ 249 (269)
T COG1235 213 LSAEEALELIEKLKPKRLVLTHLSHKNDDEELPELEA 249 (269)
T ss_pred hhHHHHHHHHHhCCcceEEEEecCCCCCHHHHhhhhh
Confidence 9999999999999999999999999998766655434
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.70 E-value=1.8e-16 Score=137.18 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=106.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeC-CEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQ-DLK 83 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 83 (202)
-+|||.|.||++||+.|.... ...+||+++.+.+.++..+.. .. .+. ..+++.+++ ++++++ +++
T Consensus 62 I~iTH~H~DHiggl~~l~~~~----~~~~Vy~~~~t~~~l~~~~~~---~~--~~~----~~~~~~~~~~~~~~ig~~~~ 128 (422)
T TIGR00649 62 IFITHGHEDHIGAVPYLFHTV----GFPPIYGTPLTIALIKSKIKE---NK--LNV----RTDLLEIHEGEPIETGENHT 128 (422)
T ss_pred EEECCCChHHhCcHHHHHHhC----CCCeEEeCHHHHHHHHHHHHh---cC--CCC----CCceEEeCCCCEEEeCCceE
Confidence 469999999999999886321 246899999998877654320 00 000 122455653 789996 699
Q ss_pred EEEEEecCCCCceeeeEEEc----cEEEeCCCCCC-------Ccc---hhhhc-cCCCEEEEeccCCCC---CCCCCCCH
Q 028873 84 ITPLPVWHGAGYRSLGFRFG----NICYISDVSEI-------PEE---TYPFL-QDCEILIMDALRPDR---SSSTHFGL 145 (202)
Q Consensus 84 I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~-------~~~---~~~~~-~~~DlLi~e~~~~~~---~~~~H~~~ 145 (202)
|+++++.|+.+ .|+||+++ +++|+||+... +.+ +.+.. +++|+||+|+|+... ....|...
T Consensus 129 v~~~~~~H~~p-~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~ 207 (422)
T TIGR00649 129 IEFIRITHSIP-DSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVL 207 (422)
T ss_pred EEEEECCCCCc-ceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHH
Confidence 99999999862 59999996 79999999642 111 22222 579999999998743 22457777
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCC
Q 028873 146 PRALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 146 ~ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
+++.+++++.+ ++++++|+++..
T Consensus 208 ~~i~~~~~~~~-~~viv~~fa~~~ 230 (422)
T TIGR00649 208 EQLNDIFKNAK-GRVIVATFASNI 230 (422)
T ss_pred HHHHHHHHhCC-CEEEEEEccccH
Confidence 78888887665 679999999664
No 18
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.65 E-value=8.3e-15 Score=123.58 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=111.5
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I 84 (202)
-.|||.|.||+ +++.+.........+..+++|.++.+.++.. + + +.-++++++. +++++++++|
T Consensus 113 VLiTH~H~DHl-D~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~-G--v-----------p~~rv~~v~~Ge~i~ig~v~I 177 (355)
T PRK11709 113 VLATHDHSDHI-DVNVAAAVLQNCADHVKFIGPQACVDLWIGW-G--V-----------PKERCIVVKPGDVVKVKDIKI 177 (355)
T ss_pred EEECCCccccc-ChHHHHHHHhhcCCCcEEEEcHHHHHHHHhc-C--C-----------CcceEEEecCCCcEEECCEEE
Confidence 36899999996 6666665433223468899999987655441 1 0 1234566654 8899999999
Q ss_pred EEEEecCC-----------C---------CceeeeEEEc----cEEEeCCCCCCCcchhhhcc--CCCEEEEeccCCCCC
Q 028873 85 TPLPVWHG-----------A---------GYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDRS 138 (202)
Q Consensus 85 ~~~~v~H~-----------~---------~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~--~~DlLi~e~~~~~~~ 138 (202)
+++|+.|. . ...++||+|+ ++.|+|||++++ .+.+..+ ++|++++...-....
T Consensus 178 t~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~-~~~~i~~~~~iDvall~iG~~p~~ 256 (355)
T PRK11709 178 HALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSN-YFAKHGNDHQIDVALGSYGENPRG 256 (355)
T ss_pred EEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccH-HHHHHHhcCCCCEEEecCCCCCCC
Confidence 99999552 1 0247999997 899999999875 4554443 599999865432223
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCC----ChHHHHHH
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLM----DHEKVNEE 177 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~----~~~~~~~~ 177 (202)
...||+++|++++++.+++|+++.+|..--. +++++.+.
T Consensus 257 ~~~hm~p~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp~~~~~~ 299 (355)
T PRK11709 257 ITDKMTSIDILRMAESLNAKVVIPVHHDIWSNFQADPQEILVL 299 (355)
T ss_pred CcCCCCHHHHHHHHHHcCCCEEEEEChhhccccccCHHHHHHH
Confidence 3579999999999999999999999986522 45666554
No 19
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.55 E-value=6.4e-14 Score=116.73 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=119.8
Q ss_pred chhhhhccccCChhhhhhhhccC-CCceeeeeCHHHHHHHHh-cCceeeecCCCCCCCc--ccceEEEeeCC-C------
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNV-QRHIPIYVAMRDFEVMKK-THYYLVDTSGIIPGAA--VSELQFNIIDE-E------ 75 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~-~~~l~iy~~~~~~~~l~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~------ 75 (202)
+|||-|.|||.||---.+....+ ..+-+|||.+.|.+.|++ .|+...||.+...+.. ....++..+.. .
T Consensus 84 lItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (335)
T PF02112_consen 84 LITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELIPLNN 163 (335)
T ss_pred EecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccceeeccc
Confidence 69999999999994322221111 268899999999999986 7888777765222211 01122222221 1
Q ss_pred -ceEe------CCEEEEEEEecCCCCc----eeeeEEEc------cEEEeCCCCCC-------Ccchhhhcc------CC
Q 028873 76 -PFTV------QDLKITPLPVWHGAGY----RSLGFRFG------NICYISDVSEI-------PEETYPFLQ------DC 125 (202)
Q Consensus 76 -~~~~------~~~~I~~~~v~H~~~~----~~~gy~i~------~~~y~~Dt~~~-------~~~~~~~~~------~~ 125 (202)
..++ .+..|+++|++|+... .+.+|.|+ .|+|.||+++- .+.+|+.+. ..
T Consensus 164 ~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~L 243 (335)
T PF02112_consen 164 TTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKL 243 (335)
T ss_pred cccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhcccccc
Confidence 1111 2467788999998721 37999997 69999999841 124555444 47
Q ss_pred CEEEEeccCCCC----CCCCCCCHHHHHHHHHHc----CC-------CEEEEecCCCCCC----hHH-HHHHHhhccc--
Q 028873 126 EILIMDALRPDR----SSSTHFGLPRALEEVRKI----QP-------KRTLFIGMMHLMD----HEK-VNEELLKLME-- 183 (202)
Q Consensus 126 DlLi~e~~~~~~----~~~~H~~~~ea~~~~~~~----~~-------k~lvltHl~~~~~----~~~-~~~~~~~~~~-- 183 (202)
.-+++||+|++. ...|||++....+.++.. +- =+||+||+.+... +++ +..++++..+
T Consensus 244 kaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n 323 (335)
T PF02112_consen 244 KAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEEN 323 (335)
T ss_pred CEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhcc
Confidence 789999999864 338999997776665443 21 1799999999773 222 2333343321
Q ss_pred cCCCcEEEeecC
Q 028873 184 TEGLDVQLSYDG 195 (202)
Q Consensus 184 ~~~~~v~~A~DG 195 (202)
..|.++.+|..|
T Consensus 324 ~LGv~fii~~QG 335 (335)
T PF02112_consen 324 NLGVNFIIPEQG 335 (335)
T ss_pred CCceEEEEcCCC
Confidence 244567777655
No 20
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.54 E-value=2.9e-13 Score=107.65 Aligned_cols=189 Identities=21% Similarity=0.225 Sum_probs=127.4
Q ss_pred chhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHh-cCceeeecCCCCCCCcccceEEEeeCC---CceEeCCE
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK-THYYLVDTSGIIPGAAVSELQFNIIDE---EPFTVQDL 82 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 82 (202)
+|||.|.|||.|+-.=.+ ..+..++-+|||.+.|++.|++ .|+++.||.+.-.+ .-.+++..++| ....+-.+
T Consensus 117 ~ITH~HLDHIsGlVinSp-~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~g--s~~~~~qvv~P~~~~slt~t~l 193 (356)
T COG5212 117 FITHAHLDHISGLVINSP-DDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSG--SGTYRMQVVRPAQSLSLTLTRL 193 (356)
T ss_pred EeccccccchhceeecCc-cccccCCceEEechhHHHHHHHHhhcccccCCccccc--CceEEEEEeChhHeeeeeeeee
Confidence 699999999999943222 2356678899999999999987 68888887643222 22577888876 34445578
Q ss_pred EEEEEEecCCC--Cce--eeeEEEc------cEEEeCCCCCCC-------cchhhhcc------CCCEEEEeccCCCC--
Q 028873 83 KITPLPVWHGA--GYR--SLGFRFG------NICYISDVSEIP-------EETYPFLQ------DCEILIMDALRPDR-- 137 (202)
Q Consensus 83 ~I~~~~v~H~~--~~~--~~gy~i~------~~~y~~Dt~~~~-------~~~~~~~~------~~DlLi~e~~~~~~-- 137 (202)
++.++|++|+. +.| +..|.|. -|+|.||+++-. +.+|+.+. ..--+++||+++..
T Consensus 194 ~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~~~~ 273 (356)
T COG5212 194 TGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSYPNDVA 273 (356)
T ss_pred cceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecCCCCCC
Confidence 89999999975 123 4778886 499999997521 13444332 24558899999874
Q ss_pred --CCCCCCCHHHHHHHHHHc----C------CCEEEEecCCCCC----ChHH-HHHHHhhccc--c-CCCcEEEeecCeE
Q 028873 138 --SSSTHFGLPRALEEVRKI----Q------PKRTLFIGMMHLM----DHEK-VNEELLKLME--T-EGLDVQLSYDGLR 197 (202)
Q Consensus 138 --~~~~H~~~~ea~~~~~~~----~------~k~lvltHl~~~~----~~~~-~~~~~~~~~~--~-~~~~v~~A~DG~~ 197 (202)
.-.|||++.-.+..+... + -=.+++||+.+.. |+++ +.++++-.++ + .+.++.++..|..
T Consensus 274 ~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~fLae~~nl~~~~f~i~~~G~~ 353 (356)
T COG5212 274 DNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQFLAEQGNLMGIEFIIMEQGDS 353 (356)
T ss_pred hhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcccccCCHHHHHHHHHHHHHhcCCccceEEEeeecccc
Confidence 237999997666555433 1 2378999998865 3443 4556663221 1 2235677887765
Q ss_pred E
Q 028873 198 V 198 (202)
Q Consensus 198 i 198 (202)
.
T Consensus 354 ~ 354 (356)
T COG5212 354 Q 354 (356)
T ss_pred c
Confidence 4
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.20 E-value=1.8e-10 Score=101.80 Aligned_cols=118 Identities=17% Similarity=0.098 Sum_probs=86.4
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I 84 (202)
-+|||-|-|||+|+|.|..- ...++||+++-+...++..+... . ......+++++++ ..++++++.|
T Consensus 70 I~lTHgHeDHIGaip~ll~~----~~~~piy~s~lt~~Li~~k~~~~---~-----~~~~~~~~~ev~~~~~i~~~~~~v 137 (555)
T COG0595 70 IFLTHGHEDHIGALPYLLKQ----VLFAPIYASPLTAALIKEKLKEH---G-----LFKNENELHEVKPGSEIKFGSFEV 137 (555)
T ss_pred EEecCCchhhccchHHHHhc----CCcCceecCHhhHHHHHHHHHHh---c-----cccccCceEEeCCCCeEEeCcEEE
Confidence 37999999999999988632 22399999999988877654310 0 0011234777764 7889999999
Q ss_pred EEEEecCCCCceeeeEEEc----cEEEeCCCCCC----C---c---chhhhcc-CCCEEEEeccCCC
Q 028873 85 TPLPVWHGAGYRSLGFRFG----NICYISDVSEI----P---E---ETYPFLQ-DCEILIMDALRPD 136 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~----~---~---~~~~~~~-~~DlLi~e~~~~~ 136 (202)
++++++|+.+ .|+||.++ .++|++|...- . . .+.+..+ |+++||+|+|...
T Consensus 138 ~f~~vtHSIP-ds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~ 203 (555)
T COG0595 138 EFFPVTHSIP-DSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAE 203 (555)
T ss_pred EEEeecccCc-cceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccC
Confidence 9999999983 69999998 79999998521 1 1 2223333 5999999999875
No 22
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.04 E-value=2e-09 Score=81.77 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=83.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
+-+|||.|.||++|++.+... ..++||+++.+.+.+++......... .. .........++ ++++++++.+
T Consensus 44 ~i~iTH~H~DH~~g~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 114 (183)
T smart00849 44 AIILTHGHPDHIGGLPELLEA-----PGAPVYAPEGTAELLKDLLKLGGALG---AE-APPPPPDRTLKDGEELDLGGLE 114 (183)
T ss_pred EEEecccCcchhccHHHHHhC-----CCCcEEEchhhhHHHhccchhccccC---cC-CCCCccceecCCCCEEEeCCce
Confidence 457999999999999877533 35789999999887765322100000 00 00112244444 4788998888
Q ss_pred EEEEEe-cCCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 028873 84 ITPLPV-WHGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRT 160 (202)
Q Consensus 84 I~~~~v-~H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~l 160 (202)
++.+++ .|.. .+++|+++ +++|++|+...++ . ...........+..+.++.+-+.+.+.+.+
T Consensus 115 ~~~~~~~~h~~--~~~~~~~~~~~vl~~gD~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 179 (183)
T smart00849 115 LEVIHTPGHTP--GSIVLYLPEGKILFTGDLLFSGG-I------------GRTDDDGGDASASDSLESLLKLLALDPELV 179 (183)
T ss_pred EEEEECCCCCC--CcEEEEECCCCEEEECCeeeccC-C------------CCcccCCCCccHHHHHHHHHHhhcCCccEe
Confidence 888888 3444 67889997 7999999986653 2 111111122334444555555555566666
Q ss_pred EEec
Q 028873 161 LFIG 164 (202)
Q Consensus 161 vltH 164 (202)
+..|
T Consensus 180 ~~~H 183 (183)
T smart00849 180 VPGH 183 (183)
T ss_pred ecCC
Confidence 5554
No 23
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.03 E-value=6.7e-10 Score=100.26 Aligned_cols=138 Identities=19% Similarity=0.137 Sum_probs=82.4
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-ee--eecCCCCC-CC--c-ccc-eEEEeeCC-Cc
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-YL--VDTSGIIP-GA--A-VSE-LQFNIIDE-EP 76 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-~~--~~~~~~~~-~~--~-~~~-~~~~~~~~-~~ 76 (202)
-+|||.|.||++|||.|..+. ...+||+++.|.+.+...+. ++ .......+ .. . ... -.+..++. ++
T Consensus 232 VlITHaH~DHiG~LP~L~k~g----~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~ 307 (630)
T TIGR03675 232 VVITHAHLDHSGLVPLLFKYG----YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEV 307 (630)
T ss_pred EEECCCCHHHHhhHHHHHHhC----CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCe
Confidence 479999999999999886431 23479999998765432111 10 00000000 00 0 000 12344543 67
Q ss_pred eEe-CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhh----hccCCCEEEEeccCCCCCCCCCCCHHH
Q 028873 77 FTV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFGLPR 147 (202)
Q Consensus 77 ~~~-~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~----~~~~~DlLi~e~~~~~~~~~~H~~~~e 147 (202)
+++ ++++|+++++.|..+...+-+.+. +++|+||.+..++.+++ ...++|+||+|+||... ...|-+.++
T Consensus 308 ~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~-~~~~~~r~~ 386 (630)
T TIGR03675 308 TDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGR-DDYQPSREE 386 (630)
T ss_pred EEecCCEEEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCC-CCCCCCHHH
Confidence 787 589999999999762223334453 79999999875433222 23579999999999852 223444444
Q ss_pred H
Q 028873 148 A 148 (202)
Q Consensus 148 a 148 (202)
+
T Consensus 387 ~ 387 (630)
T TIGR03675 387 A 387 (630)
T ss_pred H
Confidence 4
No 24
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.8e-09 Score=92.39 Aligned_cols=137 Identities=15% Similarity=0.012 Sum_probs=87.6
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeee-------cCCCCCCCcccceEEEeeCC-Cce
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVD-------TSGIIPGAAVSELQFNIIDE-EPF 77 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~ 77 (202)
.+|||+|.||++||+-+..-. -.-+||+.+.|.+..+-....... +.+...+.....-+++.++. +++
T Consensus 53 vllTHaHlDH~g~lp~l~~~~----~~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~ 128 (427)
T COG1236 53 VLLTHAHLDHIGALPYLVRNG----FEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPV 128 (427)
T ss_pred EEeccCchhhhcccHHHHHhc----cCCceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCce
Confidence 589999999999999875321 237899999987654432211100 00000000001123444553 889
Q ss_pred EeCCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhh---hccCCCEEEEeccCCCCCCCCCCCHHHHHH
Q 028873 78 TVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYP---FLQDCEILIMDALRPDRSSSTHFGLPRALE 150 (202)
Q Consensus 78 ~~~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~---~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~ 150 (202)
++++++|+++++-|-. .+-+|.++ +++|+||.+.-.+.+.+ ....+|+||+|+||.. ..|.+..+..+
T Consensus 129 ~v~~~~v~~~~AGHil--Gsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~---~~~~~r~~~e~ 203 (427)
T COG1236 129 EVGGVKVTFYNAGHIL--GSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGD---RLHPNRDEVER 203 (427)
T ss_pred EeeeEEEEEecCCCcc--ceeEEEEEeCCceEEEEeccCCCcCCCCCccccCCCCcEEEEecccCC---ccCCCHHHHHH
Confidence 9999999999999977 57777776 89999999864433322 2223699999999986 44555544444
Q ss_pred H
Q 028873 151 E 151 (202)
Q Consensus 151 ~ 151 (202)
.
T Consensus 204 ~ 204 (427)
T COG1236 204 R 204 (427)
T ss_pred H
Confidence 3
No 25
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.80 E-value=3.5e-08 Score=74.56 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=60.5
Q ss_pred CCceEeCCEEEEEEEecCCC-----CceeeeEEEc----cEEEeCCCCCCC-cchhhhccCCCEEEEeccCCCCCCCCCC
Q 028873 74 EEPFTVQDLKITPLPVWHGA-----GYRSLGFRFG----NICYISDVSEIP-EETYPFLQDCEILIMDALRPDRSSSTHF 143 (202)
Q Consensus 74 ~~~~~~~~~~I~~~~v~H~~-----~~~~~gy~i~----~~~y~~Dt~~~~-~~~~~~~~~~DlLi~e~~~~~~~~~~H~ 143 (202)
++.+++++++|+.++..|.. ..++.||.++ ++.+.||+...+ .+..+.+.++|++++.+.- ...|
T Consensus 68 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g-----~~~~ 142 (163)
T PF13483_consen 68 GGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG-----PFTM 142 (163)
T ss_dssp TEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEEEE--T-----TTS-
T ss_pred ceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEEecCCC-----Cccc
Confidence 36788899999999999952 1368999998 899999998542 3445666789999998752 4579
Q ss_pred CHHHHHHHHHHcCCCEEEEec
Q 028873 144 GLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 144 ~~~ea~~~~~~~~~k~lvltH 164 (202)
+.+++.+++++.++|.++-+|
T Consensus 143 ~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 143 GPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp -HHHHHHHHHHCT-SEEEEES
T ss_pred CHHHHHHHHHHcCCCEEEeCC
Confidence 999999999999999999888
No 26
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.53 E-value=2.6e-07 Score=74.69 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=59.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (202)
.-++||.|.||++|+..+.... +++|||++.. .++ . . .+.+ +++.+++++.+
T Consensus 46 ~Il~TH~H~DHigG~~~l~~~~-----~~~V~~~~~~------~~~----------~-----~-~~~v~~g~~~~~g~~~ 98 (248)
T TIGR03413 46 AILLTHHHHDHVGGVAELLEAF-----PAPVYGPAEE------RIP----------G-----I-THPVKDGDTVTLGGLE 98 (248)
T ss_pred EEEeCCCCccccCCHHHHHHHC-----CCeEEecccc------cCC----------C-----C-cEEeCCCCEEEECCEE
Confidence 3578999999999999886432 4789998754 111 1 0 1233 34788999999
Q ss_pred EEEEEec-CCCCceeeeEEEc--cEEEeCCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
|+.++++ |.. ..++|.++ +++|+||+-.
T Consensus 99 i~v~~tpGHT~--g~i~~~~~~~~~lftGDtl~ 129 (248)
T TIGR03413 99 FEVLAVPGHTL--GHIAYYLPDSPALFCGDTLF 129 (248)
T ss_pred EEEEECCCCCc--ccEEEEECCCCEEEEcCccc
Confidence 9999988 776 78999996 7999999953
No 27
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.46 E-value=7.7e-07 Score=70.72 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=76.4
Q ss_pred eCCCceEeCCEEEEEE-EecCCCCceeeeEEEc--------cEEEeCCCC-CCCcchhhhc--cCCCEEEEeccCC--CC
Q 028873 72 IDEEPFTVQDLKITPL-PVWHGAGYRSLGFRFG--------NICYISDVS-EIPEETYPFL--QDCEILIMDALRP--DR 137 (202)
Q Consensus 72 ~~~~~~~~~~~~I~~~-~v~H~~~~~~~gy~i~--------~~~y~~Dt~-~~~~~~~~~~--~~~DlLi~e~~~~--~~ 137 (202)
-++++|++|+..|+.- |++|+....-+||++. ++++++|+. ++.++..+++ ++.|++|++.-.. -.
T Consensus 137 ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg 216 (304)
T COG2248 137 ADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLG 216 (304)
T ss_pred cCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhh
Confidence 3468999999999764 5789873367888886 899999996 6666667777 4699999987432 11
Q ss_pred CCCCCCC----HHHHHHHHHHcCCCEEEEecC-CCCCChHHHHHHHhhccccCCCcEEEe
Q 028873 138 SSSTHFG----LPRALEEVRKIQPKRTLFIGM-MHLMDHEKVNEELLKLMETEGLDVQLS 192 (202)
Q Consensus 138 ~~~~H~~----~~ea~~~~~~~~~k~lvltHl-~~~~~~~~~~~~~~~~~~~~~~~v~~A 192 (202)
...+--+ .+-..+++.+.+ +++|+-|. --+.++++..+++.+..+..|.+|.-|
T Consensus 217 ~r~~~~~~E~~irNl~~ii~~~~-~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~Ta 275 (304)
T COG2248 217 YRVGPKSLEKGIRNLERIIEETN-ATLVIDHHLLRDKNYREFLEELFERAEKAGVEVATA 275 (304)
T ss_pred hhcChHHHHHHHHHHHHHHHhCc-ceEEEeehhhcCCCHHHHHHHHHhhHhhcCceeeeH
Confidence 1112223 333444555555 66666664 344577777666665444444444433
No 28
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.45 E-value=6.8e-07 Score=76.94 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=61.8
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-++||.|.||++|++.+... -...+||+++.+.+.+...+. . ..+.+.++ ++.+++|+.++
T Consensus 73 IilTH~H~DHiggl~~l~~~----~p~a~V~~~~~~~~~l~~~~~----~----------~~~~~~v~~g~~l~lG~~~l 134 (394)
T PRK11921 73 IVANHGEIDHSGALPELMKE----IPDTPIYCTKNGAKSLKGHYH----Q----------DWNFVVVKTGDRLEIGSNEL 134 (394)
T ss_pred EEeCCCCCchhhHHHHHHHH----CCCCEEEECHHHHHHHHHHhC----C----------CCceEEeCCCCEEeeCCeEE
Confidence 46899999999999988633 135789999988777654321 0 01234454 47899999999
Q ss_pred EEEEec--CCCCceeeeEEEc--cEEEeCCC
Q 028873 85 TPLPVW--HGAGYRSLGFRFG--NICYISDV 111 (202)
Q Consensus 85 ~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt 111 (202)
+.++++ |.. .++.+-++ +++|++|+
T Consensus 135 ~~i~tP~~H~p--~~~~~y~~~~~vLFsgD~ 163 (394)
T PRK11921 135 IFIEAPMLHWP--DSMFTYLTGDNILFSNDA 163 (394)
T ss_pred EEEeCCCCCCC--CceEEEEcCCCEEEecCc
Confidence 999666 866 45544444 89999999
No 29
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.42 E-value=1.7e-06 Score=74.98 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=87.7
Q ss_pred cccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCE
Q 028873 4 SFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDL 82 (202)
Q Consensus 4 ~~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (202)
++-+.||||+||-.||- ..| .+|. +|+++-+.+.+...+.... + . ++.++ .+++.+.++
T Consensus 114 s~yFLsHFHSDHy~GL~--~sW----~~p~-lYCS~ita~Lv~~~~~v~~--~---------~--i~~l~l~~~~~i~~~ 173 (481)
T KOG1361|consen 114 SAYFLSHFHSDHYIGLT--KSW----SHPP-LYCSPITARLVPLKVSVTK--Q---------S--IQALDLNQPLEIPGI 173 (481)
T ss_pred ceeeeeccccccccccc--ccc----cCCc-ccccccchhhhhhhcccCh--h---------h--ceeecCCCceeecce
Confidence 45678999999999985 223 2333 9999999888776554211 1 1 34443 378888899
Q ss_pred EEEEEEecCCCCceeeeEEEc-----cEEEeCCCCCCCcchhh----hc-cCCCEEEEeccCCCCC-C--CCCCCHHHHH
Q 028873 83 KITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYP----FL-QDCEILIMDALRPDRS-S--STHFGLPRAL 149 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~~~~~~----~~-~~~DlLi~e~~~~~~~-~--~~H~~~~ea~ 149 (202)
+|+.++.+|-. .++-|.++ .++++||.++..+ ..+ .. +.+|.+.+|++|-+.. . ..+-+.+.++
T Consensus 174 ~vt~ldAnHCP--Ga~mf~F~~~~~~~~lhtGDFR~s~~-m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~ 250 (481)
T KOG1361|consen 174 QVTLLDANHCP--GAVMFLFELSFGPCILHTGDFRASAD-MSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESVQEVV 250 (481)
T ss_pred EEEEeccccCC--CceEEEeecCCCceEEecCCcccChh-hhhChHHhcCCccceEEEeecccCCCCCCccHHHHHHHHH
Confidence 99999999977 67777776 7999999997643 333 22 4699999999997631 1 1224445555
Q ss_pred HHHHHc
Q 028873 150 EEVRKI 155 (202)
Q Consensus 150 ~~~~~~ 155 (202)
++....
T Consensus 251 ~~i~~~ 256 (481)
T KOG1361|consen 251 DVIRSH 256 (481)
T ss_pred HHHHhh
Confidence 554443
No 30
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.28 E-value=9.6e-05 Score=59.95 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=94.3
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
+=.|||-|.||+ +...++... ....-.++.|......+.+ .+ .+...++.+. +..+++++.+
T Consensus 55 ~ilitH~H~DHl-~~~~~~~~~--~~~~~~~~~p~~~~~~~~~-~g-------------~~~~~~~~~~~~~~~~~~~~~ 117 (258)
T COG2220 55 YILITHDHYDHL-DDETLIALR--TNKAPVVVVPLGAGDLLIR-DG-------------VEAERVHELGWGDVIELGDLE 117 (258)
T ss_pred EEEEeCCCcccc-CHHHHHHHh--cCCCcEEEeHHHHHHHHHh-cC-------------CCcceEEeecCCceEEecCcE
Confidence 446899999994 455544332 1223344555544222212 11 1122355554 3678889999
Q ss_pred EEEEEecCCC-----------CceeeeEEEc----cEEEeCCCCCCCcchhhhcc-CCCEEEEeccCCCCCCCCCCCHHH
Q 028873 84 ITPLPVWHGA-----------GYRSLGFRFG----NICYISDVSEIPEETYPFLQ-DCEILIMDALRPDRSSSTHFGLPR 147 (202)
Q Consensus 84 I~~~~v~H~~-----------~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~-~~DlLi~e~~~~~~~~~~H~~~~e 147 (202)
|+..++.|.. .....||+|+ ++..++||++.. ....... .+|++.++.--.. ...++..++
T Consensus 118 i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~-~~~~~~~~~~DvallPig~~~--~~~~~~~~~ 194 (258)
T COG2220 118 ITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLF-LIIEELDGPVDVALLPIGGYP--NATMMPPEA 194 (258)
T ss_pred EEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHH-HhhhhhcCCccEEEeccCCCC--CCccCCHHH
Confidence 9999999853 1236789998 789999999732 1222222 2799999876442 678999999
Q ss_pred HHHHHHHcCCCEEEEecCC
Q 028873 148 ALEEVRKIQPKRTLFIGMM 166 (202)
Q Consensus 148 a~~~~~~~~~k~lvltHl~ 166 (202)
+.+.++..++|+++-+|..
T Consensus 195 ~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 195 AVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred HHHHHHHhcCCeEEeeccc
Confidence 9999999999999999987
No 31
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.23 E-value=3.5e-06 Score=70.66 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=59.9
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (202)
.-.+||.|.||++|...|.... ..+|||+....+.+. + .. +.+ +++.+.+++.+
T Consensus 124 ~ILlTH~H~DH~GG~~~L~~~~-----ga~V~g~~~~~~~i~--------------~-----~d-~~v~dGd~i~lgg~~ 178 (329)
T PLN02398 124 YILNTHHHYDHTGGNLELKARY-----GAKVIGSAVDKDRIP--------------G-----ID-IVLKDGDKWMFAGHE 178 (329)
T ss_pred EEEECCCCchhhCCHHHHHHhc-----CCEEEEehHHhhhcc--------------C-----Cc-EEeCCCCEEEECCeE
Confidence 3468999999999999986432 478999986543211 1 11 223 34678889999
Q ss_pred EEEEEec-CCCCceeeeEEEc--cEEEeCCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
++.+.++ |.. ..++|.+. .++|+||+-.
T Consensus 179 l~vi~tPGHT~--GhI~~~~~~~~vLFtGDtLf 209 (329)
T PLN02398 179 VLVMETPGHTR--GHISFYFPGSGAIFTGDTLF 209 (329)
T ss_pred EEEEeCCCcCC--CCEEEEECCCCEEEECCCcC
Confidence 9999887 776 78888885 7999999953
No 32
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.17 E-value=7.5e-06 Score=72.20 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=63.0
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeC-CE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DL 82 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~ 82 (202)
+-++||.|.||++|++.|+... ...+||+++.+.+.+...... + ..+++.++ ++.+++| +.
T Consensus 74 ~IilTH~H~DH~Ggl~~Ll~~~----p~a~V~~s~~~~~~l~~~~~~--------~-----~~~~~~v~~G~~l~lG~~~ 136 (479)
T PRK05452 74 YIVINHAEEDHAGALTELMAQI----PDTPIYCTANAIDSINGHHHH--------P-----EWNFNVVKTGDTLDIGNGK 136 (479)
T ss_pred EEEeCCCCcchhchHHHHHHHC----CCCEEEECHHHHHHHHHhhcC--------C-----cCeEEEeCCCCEEecCCCc
Confidence 4468999999999999886431 358899999988776553210 0 13356665 4789998 57
Q ss_pred EEEEEEec--CCCCceeeeEEEc--cEEEeCCC
Q 028873 83 KITPLPVW--HGAGYRSLGFRFG--NICYISDV 111 (202)
Q Consensus 83 ~I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt 111 (202)
+++.+.++ |.. .++.+-++ +++|++|.
T Consensus 137 ~l~~i~tP~~H~p--gs~~~y~~~~~vLFsgD~ 167 (479)
T PRK05452 137 QLIFVETPMLHWP--DSMMTYLTGDAVLFSNDA 167 (479)
T ss_pred EEEEEECCCCCCC--CceEEEEcCCCEEEeccc
Confidence 78888776 766 56666565 89999996
No 33
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.06 E-value=6.4e-06 Score=66.72 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=57.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-.+||.|.||++|+..|+... ...+||++..... .+ . .+.+. ++.+++++.++
T Consensus 49 IllTH~H~DHigG~~~l~~~~----~~~~V~~~~~~~~----------------~~-----~-~~~v~~g~~i~ig~~~~ 102 (251)
T PRK10241 49 IFLTHHHHDHVGGVKELVEKF----PQIVVYGPQETQD----------------KG-----T-TQVVKDGETAFVLGHEF 102 (251)
T ss_pred EEeCCCCchhhccHHHHHHHC----CCCEEEecccccc----------------cC-----C-ceEeCCCCEEEeCCcEE
Confidence 468999999999999886432 2478999764311 00 0 12332 46788888899
Q ss_pred EEEEec-CCCCceeeeEEEccEEEeCCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFGNICYISDVS 112 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~~~~y~~Dt~ 112 (202)
+.+.++ |.. ..++|..+.++|+||+-
T Consensus 103 ~vi~tPGHT~--ghi~~~~~~~lFtGDtl 129 (251)
T PRK10241 103 SVFATPGHTL--GHICYFSKPYLFCGDTL 129 (251)
T ss_pred EEEEcCCCCc--cceeeecCCcEEEcCee
Confidence 999888 876 77888667889999985
No 34
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=97.95 E-value=0.00011 Score=63.96 Aligned_cols=186 Identities=19% Similarity=0.111 Sum_probs=103.9
Q ss_pred chhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHh-cCceeeec--CC---CCCCCcc-cce-EEEeeCC-Cce
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK-THYYLVDT--SG---IIPGAAV-SEL-QFNIIDE-EPF 77 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~-~~~~~~~~--~~---~~~~~~~-~~~-~~~~~~~-~~~ 77 (202)
.|||-|.||++=||.|-.+. ..=+||+.+.|.+.+-- +.+|+-.. .. .+..... ..+ ..+.++. +..
T Consensus 239 iiTHAHLDH~G~lP~LfkYg----y~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevT 314 (637)
T COG1782 239 IITHAHLDHCGFLPLLFKYG----YDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVT 314 (637)
T ss_pred EEeecccccccchhhhhhcC----CCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCccc
Confidence 68999999999999885542 23489999998765432 12222110 00 0000000 011 1122332 344
Q ss_pred Ee-CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhh----hccCCCEEEEeccCCCCCCCCCCCHHHH
Q 028873 78 TV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFGLPRA 148 (202)
Q Consensus 78 ~~-~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~----~~~~~DlLi~e~~~~~~~~~~H~~~~ea 148 (202)
.+ -++++|...+-|-.+....=+-|. .++|+||..+-.-.+++ -+..++.||+|+||.. ...-+.+-+||
T Consensus 315 DIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg-~~d~q~~R~ea 393 (637)
T COG1782 315 DIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGG-RDDVQPPREEA 393 (637)
T ss_pred ccCCccEEEEecccchhcceeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCC-ccccCccHHHH
Confidence 45 389999999999542233444554 89999999865433333 3345999999999984 34556677776
Q ss_pred HHHHHHc------CCCEEEEecCCCCCChHHH---HHHHhhccccCCCcEEEeecCeEEee
Q 028873 149 LEEVRKI------QPKRTLFIGMMHLMDHEKV---NEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 149 ~~~~~~~------~~k~lvltHl~~~~~~~~~---~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-+-+.+. +-.++.+-=|.-....+-| ++.+++- ... ++-+=-|||.++.
T Consensus 394 E~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g--~ip-e~PVYlDGMI~Ea 451 (637)
T COG1782 394 EKELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKG--LIP-EVPVYLDGMIWEA 451 (637)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcC--CCC-CCceeeeeeeeeh
Confidence 6544332 2234544333333333322 3333321 111 3555679998863
No 35
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.94 E-value=4.4e-05 Score=63.25 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=69.6
Q ss_pred chhhhhccccCChhhhhhhhccCCCceeeeeCHHHH-------HHHHhcCceeeecCCCCCCCcc-cce-EEEeeC-CCc
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDF-------EVMKKTHYYLVDTSGIIPGAAV-SEL-QFNIID-EEP 76 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~ 76 (202)
.|||||.||++.||-+.... +..=+||..-.|+ +..++..-......-.+..... ..+ +...+. .+.
T Consensus 65 IIsHFHlDHcGaLPyfsEv~---GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt 141 (501)
T KOG1136|consen 65 IISHFHLDHCGALPYFSEVV---GYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQT 141 (501)
T ss_pred EEeeecccccccccchHhhh---CCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehhe
Confidence 68999999999999886543 2233455554432 3333321100000000000000 000 011121 156
Q ss_pred eEe-CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhhc----cCCCEEEEeccCCC
Q 028873 77 FTV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL----QDCEILIMDALRPD 136 (202)
Q Consensus 77 ~~~-~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~----~~~DlLi~e~~~~~ 136 (202)
+++ +++.|+++-+-|-- .+.-|.+. +++|+||-+..|+.-.-.+ -..|+||.|++|..
T Consensus 142 ~~vD~dl~IrayYAGHVL--GAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYat 208 (501)
T KOG1136|consen 142 IQVDEDLQIRAYYAGHVL--GAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYAT 208 (501)
T ss_pred EEecccceeeeeeccccc--ceeEEEEEecceeEEEecCccCCcccccchhhhccccCceEEeecccee
Confidence 676 58999999999976 33334343 9999999987765322111 25899999999954
No 36
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.84 E-value=3.1e-05 Score=67.67 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=71.8
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHH---HHHHHhcCceeeecCCCCC------CCcccce-EEEeeCC-
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRD---FEVMKKTHYYLVDTSGIIP------GAAVSEL-QFNIIDE- 74 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~---~~~l~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~- 74 (202)
..|||||.||.+-||.+..-...++ .+|..+.| .+++..- |........+ +.-..++ ++..++.
T Consensus 69 llIthFhldh~aslp~~~qkTsf~g---rvfmth~TkAi~kwllsd--yvrvs~~s~~~~Ly~e~dl~~s~dKie~idfh 143 (668)
T KOG1137|consen 69 LLITHFHLDHAASLPFTLQKTSFIG---RVFMTHPTKAIYKWLLSD--YVRVSNRSGDDRLYTEGDLMESMDKIETIDFH 143 (668)
T ss_pred HHHhhhhhhhcccccceeeeccccc---eeEEecchHHHHHhhhhc--ceEeeeccCccccccchhHHHhhhhheeeeec
Confidence 4699999999999998864322233 35555555 3333321 2111110000 0000111 1122222
Q ss_pred CceEeCCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhh--c--cCCCEEEEeccCCC
Q 028873 75 EPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPF--L--QDCEILIMDALRPD 136 (202)
Q Consensus 75 ~~~~~~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~--~--~~~DlLi~e~~~~~ 136 (202)
+..+++|++++|+.+-|-. .+--|.++ ++.|+||-+.-.++=... + .+.|+||.|.+|..
T Consensus 144 e~~ev~gIkf~p~~aGhVl--gacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv 211 (668)
T KOG1137|consen 144 ETVEVNGIKFWPYHAGHVL--GACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGV 211 (668)
T ss_pred cccccCCeEEEeeccchhh--hheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeE
Confidence 5677899999999988865 34446676 899999997543321111 1 25899999999864
No 37
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.81 E-value=7.1e-05 Score=60.87 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=55.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCC-E
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQD-L 82 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 82 (202)
.-.+||.|.||++|+..|+... ...+||++... ..+ + . .+.+ +++.+++|+ .
T Consensus 49 ~Il~TH~H~DH~gG~~~l~~~~----~~~~V~~~~~~------~~~----------~-----~-~~~v~~gd~i~lg~~~ 102 (258)
T PLN02469 49 LVLTTHHHWDHAGGNEKIKKLV----PGIKVYGGSLD------NVK----------G-----C-THPVENGDKLSLGKDV 102 (258)
T ss_pred EEEecCCCCccccCHHHHHHHC----CCCEEEEechh------cCC----------C-----C-CeEeCCCCEEEECCce
Confidence 3568999999999999987432 23689997632 011 1 0 1223 346788885 6
Q ss_pred EEEEEEec-CCCCceeeeEEEc------cEEEeCCCC
Q 028873 83 KITPLPVW-HGAGYRSLGFRFG------NICYISDVS 112 (202)
Q Consensus 83 ~I~~~~v~-H~~~~~~~gy~i~------~~~y~~Dt~ 112 (202)
+++.+.++ |.. .++.|.++ .++|+|||-
T Consensus 103 ~~~vi~tPGHT~--ghi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 103 NILALHTPCHTK--GHISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred EEEEEECCCCCC--CCEEEEeccCCCCCCEEEecCcc
Confidence 78888877 766 78888885 389999984
No 38
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=97.68 E-value=0.00012 Score=59.17 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=57.1
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
+.+.||.|.||++|+..|.... ...+.+||.. .+ ..+. + -+.++ ++.+.++|.+
T Consensus 54 ~Il~THhH~DHsGGn~~i~~~~---~~~~~v~g~~--~~----r~~~---------------i-~~~~~~~e~~~~~g~~ 108 (265)
T KOG0813|consen 54 AILTTHHHYDHSGGNEDIKREI---PYDIKVIGGA--DD----RIPG---------------I-TRGLKDGETVTVGGLE 108 (265)
T ss_pred EEEeccccccccCcHHHHHhhc---cCCcEEecCC--hh----cCcc---------------c-cccCCCCcEEEECCEE
Confidence 4568999999999999986432 2468888875 11 1211 1 01133 3789999999
Q ss_pred EEEEEec-CCCCceeeeEEEc-----cEEEeCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG-----NICYISDV 111 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~-----~~~y~~Dt 111 (202)
|+++.++ |.. ..+.|.+. ..+++|||
T Consensus 109 v~~l~TPgHT~--~hi~~~~~~~~~e~~iFtGDt 140 (265)
T KOG0813|consen 109 VRCLHTPGHTA--GHICYYVTESTGERAIFTGDT 140 (265)
T ss_pred EEEEeCCCccC--CcEEEEeecCCCCCeEEeCCc
Confidence 9999998 766 77778776 58889998
No 39
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.64 E-value=0.00024 Score=56.18 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=59.0
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeee---cCCCCCCCcccceEEEee-CCCceEeC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVD---TSGIIPGAAVSELQFNII-DEEPFTVQ 80 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (202)
.-.+||+|.||++|+..+..... ..+++.++............... .....+. ....... .++.+.++
T Consensus 65 ~vilTH~H~DH~gg~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 136 (252)
T COG0491 65 AILLTHGHFDHIGGAAVLKEAFG----AAPVIAPAEVPLLLREEILRKAGVTAEAYAAPG----ASPLRALEDGDELDLG 136 (252)
T ss_pred eeeecCCchhhhccHHHHHhhcC----CceEEccchhhhhhhcccccccccccccCCCCc----cccceecCCCCEEEec
Confidence 35789999999999988764321 24446666654443332111000 0000010 0111222 34678888
Q ss_pred CEEEEEEEec-CCCCceeeeEEEcc--EEEeCCCCCC
Q 028873 81 DLKITPLPVW-HGAGYRSLGFRFGN--ICYISDVSEI 114 (202)
Q Consensus 81 ~~~I~~~~v~-H~~~~~~~gy~i~~--~~y~~Dt~~~ 114 (202)
+..++.++++ |.. ...+|.++. ++|++|.-..
T Consensus 137 ~~~~~~i~tpGHT~--g~~~~~~~~~~~l~~gD~~~~ 171 (252)
T COG0491 137 GLELEVLHTPGHTP--GHIVFLLEDGGVLFTGDTLFA 171 (252)
T ss_pred CeEEEEEECCCCCC--CeEEEEECCccEEEecceecc
Confidence 8666666666 777 799999983 9999999644
No 40
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.61 E-value=0.00056 Score=54.74 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=92.1
Q ss_pred cccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEe--CC
Q 028873 4 SFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTV--QD 81 (202)
Q Consensus 4 ~~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 81 (202)
+|+..+|-|.|| ..+.++..+. .+..++ =++|.+.+..+... . .+ ...+..-.....+.- +-
T Consensus 134 d~~~vsh~h~dh-ld~~~~~~~~-~~~~~~-wfvp~g~k~~m~~~-------g---c~---~v~el~wwe~~~~vkn~~~ 197 (343)
T KOG3798|consen 134 DFAVVSHDHYDH-LDADAVKKIT-DRNPQI-WFVPLGMKKWMEGD-------G---SS---TVTELNWGESSEFVKNGKT 197 (343)
T ss_pred ceeccccccccc-cchHHHHhhh-ccCccc-eeehhhhhheecCC-------C---CC---ceeEeeccchhceecCCcE
Confidence 678899999999 6777777664 344445 67887776554331 0 11 001111111111211 23
Q ss_pred EEEEEEEecCCCCcee---------eeEEEc----cEEEeCCCCCCCcchhhh---ccCCCEEEEeccCCC-C--CCCCC
Q 028873 82 LKITPLPVWHGAGYRS---------LGFRFG----NICYISDVSEIPEETYPF---LQDCEILIMDALRPD-R--SSSTH 142 (202)
Q Consensus 82 ~~I~~~~v~H~~~~~~---------~gy~i~----~~~y~~Dt~~~~~~~~~~---~~~~DlLi~e~~~~~-~--~~~~H 142 (202)
++|.+.|..|.. ..+ -++.+- +|+++|||++++.+..+. +--+||-.+.+--.+ + -...|
T Consensus 198 ~ti~~tPaqHw~-~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaYePrWfmK~~H 276 (343)
T KOG3798|consen 198 YTIWCLPAQHWG-QRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAYEPRWFMKSQH 276 (343)
T ss_pred EEEEEcchhhhc-ccccccCCcceeeeeEEecCCceEEecCCCCcccHHHHHHHHhcCCcceeeccccccCchhhccccc
Confidence 788999999954 111 234443 899999999998544332 223899888875543 2 23679
Q ss_pred CCHHHHHHHHHHcCCCEEEEecC
Q 028873 143 FGLPRALEEVRKIQPKRTLFIGM 165 (202)
Q Consensus 143 ~~~~ea~~~~~~~~~k~lvltHl 165 (202)
.+++||+++-+..++|+.+-.|-
T Consensus 277 InPeEav~Ihkdv~arns~gIHW 299 (343)
T KOG3798|consen 277 INPEEAVEIHKDVRAKNSIGIHW 299 (343)
T ss_pred CCHHHHHHHHHHHhhhcceeEee
Confidence 99999999999999998888774
No 41
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.48 E-value=0.00093 Score=53.70 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=30.0
Q ss_pred cccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHH
Q 028873 4 SFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFE 43 (202)
Q Consensus 4 ~~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~ 43 (202)
.+.+|||-|.||.+||+.+.. .....++||++++..+
T Consensus 60 d~vvlSHgH~DH~GGL~~~~~---~~~~~i~v~ahp~af~ 96 (259)
T COG1237 60 DAVVLSHGHYDHTGGLPYLLE---ENNPGIPVYAHPDAFK 96 (259)
T ss_pred cEEEEeCCCccccCchHhHHh---ccCCCceEEeChHHHh
Confidence 357899999999999996643 2346799999998876
No 42
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=97.33 E-value=0.00026 Score=53.26 Aligned_cols=20 Identities=15% Similarity=-0.081 Sum_probs=17.3
Q ss_pred cchhhhhccccCChhhhhhh
Q 028873 6 STIALFVGFLPMGLDDLRDW 25 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~ 25 (202)
-++||.|.||++|++.+...
T Consensus 47 vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 47 VILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEESSSSHHHHTTHHHHHHH
T ss_pred EEECcccccccccccccccc
Confidence 36899999999999998754
No 43
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.28 E-value=0.00063 Score=55.14 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=53.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (202)
.-.+||.|.||++|...|+... ...++|..+.. . .. .+ +.+ +++.+.+++.+
T Consensus 64 ~Il~TH~H~DHigg~~~l~~~~----~~a~v~~~~~~--------~----~~----------~d-~~l~~g~~i~~g~~~ 116 (251)
T PLN02962 64 YAMNTHVHADHVTGTGLLKTKL----PGVKSIISKAS--------G----SK----------AD-LFVEPGDKIYFGDLY 116 (251)
T ss_pred EEEcCCCCchhHHHHHHHHHHC----CCCeEEecccc--------C----CC----------CC-EEeCCCCEEEECCEE
Confidence 3468999999999999886321 12455654310 0 00 11 223 34778999999
Q ss_pred EEEEEec-CCCCceeeeEEEc--------cEEEeCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG--------NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~--------~~~y~~Dt~ 112 (202)
++.+.++ |.. .++.|.++ .++|+||+-
T Consensus 117 l~vi~tPGHT~--g~v~~~~~d~~~~~~~~~lftGD~L 152 (251)
T PLN02962 117 LEVRATPGHTA--GCVTYVTGEGPDQPQPRMAFTGDAL 152 (251)
T ss_pred EEEEECCCCCc--CcEEEEeccCCCCCccceEEECCee
Confidence 9999888 766 78889875 489999983
No 44
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.24 E-value=0.0052 Score=56.52 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=80.5
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~I 84 (202)
-.|||.|.||++|++.+..-. +...+|.|.+..+ . + ...... +++.++.++.++
T Consensus 494 lilTH~d~DHiGGl~~ll~~~----~v~~i~~~~~~~~---~-------------~-----~~~~~~~~G~~~~~~~~~~ 548 (662)
T TIGR00361 494 LILSHADQDHIGGAEIILKHH----PVKRLVIPKGFVE---E-------------G-----VAIEECKRGDVWQWQGLQF 548 (662)
T ss_pred EEECCCchhhhCcHHHHHHhC----CccEEEeccchhh---C-------------C-----CceEecCCCCEEeECCEEE
Confidence 469999999999999986432 2235677654210 0 0 001222 246677788888
Q ss_pred EEEEecC----CCCceeeeEEEc----cEEEeCCCCCCCcc-hhhhcc--CCCEEEEeccCCCCCCCCCCCHHHHHHHHH
Q 028873 85 TPLPVWH----GAGYRSLGFRFG----NICYISDVSEIPEE-TYPFLQ--DCEILIMDALRPDRSSSTHFGLPRALEEVR 153 (202)
Q Consensus 85 ~~~~v~H----~~~~~~~gy~i~----~~~y~~Dt~~~~~~-~~~~~~--~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~ 153 (202)
+.+.-.. ..+..+..++++ ++.++||.+.-.|+ +.+... ++|+|.. +|+|-- .+...++.+
T Consensus 549 ~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~-------~HHGS~-~Sss~~fl~ 620 (662)
T TIGR00361 549 HVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMRVFPNIKADVLQV-------GHHGSK-TSTSEELIQ 620 (662)
T ss_pred EEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHHHHHhcccCcCccEEEe-------CCCCCC-CCChHHHHH
Confidence 7773221 112467788887 89999999754332 222111 3566654 232211 112357788
Q ss_pred HcCCCEEEEecCC-CCC--ChHHHHHHHhh
Q 028873 154 KIQPKRTLFIGMM-HLM--DHEKVNEELLK 180 (202)
Q Consensus 154 ~~~~k~lvltHl~-~~~--~~~~~~~~~~~ 180 (202)
+.+++..+++==. -++ +++++.+.+++
T Consensus 621 ~v~P~~aiiS~g~~N~yghP~~~vl~rl~~ 650 (662)
T TIGR00361 621 QVQPKVAIISAGRNNRWHHPHQKVLQRLQR 650 (662)
T ss_pred hcCCCEEEEECCCCCCCCCChHHHHHHHHH
Confidence 8899888875211 111 45667666665
No 45
>PRK11539 ComEC family competence protein; Provisional
Probab=97.00 E-value=0.0095 Score=55.65 Aligned_cols=138 Identities=14% Similarity=0.014 Sum_probs=77.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCEEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKIT 85 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 85 (202)
-.|||.|.||++|++.+..-. ....+|.+....+ . . ...+++.++.++.+++
T Consensus 555 lilSH~d~DH~GGl~~Ll~~~----~~~~i~~~~~~~~-------~---------------~--~~~~g~~~~~~~~~~~ 606 (755)
T PRK11539 555 IILSHEHLDHRGGLASLLHAW----PMAWIRSPLNWAN-------H---------------L--PCVRGEQWQWQGLTFS 606 (755)
T ss_pred EEeCCCCcccCCCHHHHHHhC----CcceeeccCcccC-------c---------------c--cccCCCeEeECCEEEE
Confidence 469999999999999986432 2345666531100 0 0 0112345566677766
Q ss_pred EEEe-cCC---CCceeeeEEEc----cEEEeCCCCCCCc-chhhhc---cCCCEEEEeccCCCCCCCCCCCHHHHHHHHH
Q 028873 86 PLPV-WHG---AGYRSLGFRFG----NICYISDVSEIPE-ETYPFL---QDCEILIMDALRPDRSSSTHFGLPRALEEVR 153 (202)
Q Consensus 86 ~~~v-~H~---~~~~~~gy~i~----~~~y~~Dt~~~~~-~~~~~~---~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~ 153 (202)
.+.- .|. .+..+..++++ ++.++||.+.-.| ++.+.. -++|+|.. +|+| +..+...++.+
T Consensus 607 vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~v-------pHHG-S~tSss~~fl~ 678 (755)
T PRK11539 607 VHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQV-------PHHG-SNTSSSLPFIR 678 (755)
T ss_pred EEecCcccCCCCCCccEEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEe-------CCCC-CCCCChHHHHH
Confidence 6622 222 12356777886 7999999964332 222211 13566544 2322 12223456888
Q ss_pred HcCCCEEEEecCCCCC----ChHHHHHHHhh
Q 028873 154 KIQPKRTLFIGMMHLM----DHEKVNEELLK 180 (202)
Q Consensus 154 ~~~~k~lvltHl~~~~----~~~~~~~~~~~ 180 (202)
+.+++-.+++= ..++ +++++.+.+++
T Consensus 679 ~v~P~~aiiS~-g~~NryghP~~~v~~rl~~ 708 (755)
T PRK11539 679 AVNGKVALASA-SRYNAWRLPSVKVKQRYQQ 708 (755)
T ss_pred hcCCCEEEEeC-CCCCCCCCCCHHHHHHHHH
Confidence 89998888643 2222 35666666665
No 46
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=96.96 E-value=0.0023 Score=48.58 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=54.3
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCEEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKI 84 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 84 (202)
||.=||.|+|||-|-..|+... ++.+..+.+.-+. .-+.+.-+++.+++|++.+
T Consensus 60 Ya~NTH~HADHiTGtg~Lkt~~------------pg~kSVis~~SGa--------------kAD~~l~~Gd~i~~G~~~l 113 (237)
T KOG0814|consen 60 YALNTHVHADHITGTGLLKTLL------------PGCKSVISSASGA--------------KADLHLEDGDIIEIGGLKL 113 (237)
T ss_pred eeecceeecccccccchHHHhc------------ccHHHHhhhcccc--------------ccccccCCCCEEEEccEEE
Confidence 6777999999999998776331 1222222221110 1123444467899999999
Q ss_pred EEEEec-CCCCceeeeEEEc--cEEEeCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFG--NICYISDV 111 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt 111 (202)
+....+ |.. .|+-|+.. +.+|+||+
T Consensus 114 e~ratPGHT~--GC~TyV~~d~~~aFTGDa 141 (237)
T KOG0814|consen 114 EVRATPGHTN--GCVTYVEHDLRMAFTGDA 141 (237)
T ss_pred EEecCCCCCC--ceEEEEecCcceeeecce
Confidence 988888 666 89999997 88999987
No 47
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=95.70 E-value=0.11 Score=43.02 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=81.2
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEe-eCCCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNI-IDEEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I 84 (202)
-..||.|.||++|++.+..-. .-+.+-++.+.......+. ... ....+. ..++.+++++..+
T Consensus 94 lIlTH~d~DHiGg~~~vl~~~--~v~~~~i~~~~~~~~~~~~-----~~~----------~~~~~~~~~G~~~~~~~~~f 156 (293)
T COG2333 94 LILTHPDADHIGGLDEVLKTI--KVPELWIYAGSDSTSTFVL-----RDA----------GIPVRSCKAGDSWQWGGVVF 156 (293)
T ss_pred EEeccCCccccCCHHHHHhhC--CCCcEEEeCCCCccchhhh-----hhc----------CCceeccccCceEEECCeEE
Confidence 357999999999999997422 2345777776654222110 000 011222 2246677777776
Q ss_pred EEEEec-C---CCCceeeeEEEc----cEEEeCCCCCCCcchhhhcc-C----CCEEEEeccCCCCCCCCCCCHHHHHHH
Q 028873 85 TPLPVW-H---GAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ-D----CEILIMDALRPDRSSSTHFGLPRALEE 151 (202)
Q Consensus 85 ~~~~v~-H---~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~-~----~DlLi~e~~~~~~~~~~H~~~~ea~~~ 151 (202)
+.+-=. . ..+..+...+++ ++.++||.+.-.| ..+.+ + +|+|.. +|.| +..+....+
T Consensus 157 ~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~E--~~l~~~~~~l~~dVLkV-------~HHG-S~tSss~~F 226 (293)
T COG2333 157 QVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKGE--KLLKKYGPDLRADVLKV-------GHHG-SKTSSSLAF 226 (293)
T ss_pred EEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchhH--HHHHhhCCCccceEEEe-------ccCC-ccccCcHHH
Confidence 654222 1 112356667776 8999999986543 22232 2 555543 2222 122345678
Q ss_pred HHHcCCCEEEEecCCCCC----ChHHHHHHHhhc
Q 028873 152 VRKIQPKRTLFIGMMHLM----DHEKVNEELLKL 181 (202)
Q Consensus 152 ~~~~~~k~lvltHl~~~~----~~~~~~~~~~~~ 181 (202)
.+.+++|-.++.= ...+ ++.++.+++++.
T Consensus 227 l~~v~Pk~AliS~-G~~N~yghPh~~Vl~rl~~~ 259 (293)
T COG2333 227 LEAVKPKVALISS-GRNNRYGHPHQEVLERLQKR 259 (293)
T ss_pred HHhcCCcEEEEEe-eccCCCCCCcHHHHHHHHhc
Confidence 8888888765432 2222 356666666653
No 48
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=95.05 E-value=0.088 Score=45.12 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=62.6
Q ss_pred chhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEEE
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKIT 85 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I~ 85 (202)
+.+|.-.||+++|+.++..+ ...+|+++.-..+.|+..+... ..+.+++ ++.+.+||-+++
T Consensus 77 i~~H~ePDhsg~l~~ll~~~----p~a~ii~s~~~~~~L~~~~~~~--------------~~~~ivk~Gd~ldlGg~tL~ 138 (388)
T COG0426 77 IVNHTEPDHSGSLPELLELA----PNAKIICSKLAARFLKGFYHDP--------------EWFKIVKTGDTLDLGGHTLK 138 (388)
T ss_pred EECCCCcchhhhHHHHHHhC----CCCEEEeeHHHHHHHHHhcCCc--------------cceeecCCCCEeccCCcEEE
Confidence 56888899999999997553 3689999999888888754321 1145554 478999998888
Q ss_pred EEEec--CCCCcee-eeEEEc-cEEEeCCC
Q 028873 86 PLPVW--HGAGYRS-LGFRFG-NICYISDV 111 (202)
Q Consensus 86 ~~~v~--H~~~~~~-~gy~i~-~~~y~~Dt 111 (202)
.++++ |.+ ++ +-|-.+ ++.||+|.
T Consensus 139 Fi~ap~LHWP--d~m~TYd~~~kILFS~D~ 166 (388)
T COG0426 139 FIPAPFLHWP--DTMFTYDPEDKILFSCDA 166 (388)
T ss_pred EEeCCCCCCC--CceeEeecCCcEEEcccc
Confidence 88776 876 34 335544 89999996
No 49
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=92.47 E-value=0.22 Score=28.80 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecC
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGM 165 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl 165 (202)
-.+|.+.++..++++..+++++++.|=
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 368999999999999999999999993
No 50
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=73.47 E-value=8.3 Score=35.59 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHcCC--CEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~--k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-.+|....+..+++++.++ ++++++|=.+.. ...+.+.+++ ..+.++.....|.++.+
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~-~~~la~~l~~---~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSK-ILDLASSIYK---KFNIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHH-HHHHHHHHHH---HhCCcEEeCCCCCEEEe
Confidence 4789999999999999865 899999955543 4555555553 23446778888888875
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=69.59 E-value=7.4 Score=30.08 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=48.5
Q ss_pred ccccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCE
Q 028873 3 ASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDL 82 (202)
Q Consensus 3 ~~~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (202)
+|-+.|=.-|.||+-.-...+. .....||+|.+..+ .+++. ++ +-+.+.+.-++|+
T Consensus 54 ggv~~IvLTn~dHvR~A~~ya~-----~~~a~i~~p~~d~~----~~p~~-------~D--------~~l~dge~i~~g~ 109 (199)
T PF14597_consen 54 GGVAWIVLTNRDHVRAAEDYAE-----QTGAKIYGPAADAA----QFPLA-------CD--------RWLADGEEIVPGL 109 (199)
T ss_dssp T--SEEE-SSGGG-TTHHHHHH-----HS--EEEEEGGGCC----C-SS---------S--------EEE-TT-BSSTTE
T ss_pred CCceEEEEeCChhHhHHHHHHH-----HhCCeeeccHHHHh----hCCCC-------Cc--------cccccCCCccCce
Confidence 3445566666777766655442 23578899887753 23321 11 2233323445899
Q ss_pred EEEEEEecCCCCceeeeEEEc-cEEEeCCCC
Q 028873 83 KITPLPVWHGAGYRSLGFRFG-NICYISDVS 112 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~gy~i~-~~~y~~Dt~ 112 (202)
+|..++-.|+. ..++|.++ ++.++||--
T Consensus 110 ~vi~l~G~ktp--GE~ALlled~vLi~GDl~ 138 (199)
T PF14597_consen 110 WVIHLPGSKTP--GELALLLEDRVLITGDLL 138 (199)
T ss_dssp EEEEE-SSSST--TEEEEEETTTEEEESSSE
T ss_pred EEEEcCCCCCC--ceeEEEeccceEEeccee
Confidence 99999988887 68899998 889999963
No 52
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.16 E-value=3.7 Score=36.45 Aligned_cols=36 Identities=8% Similarity=-0.088 Sum_probs=27.6
Q ss_pred hhhhhccccCChhhhhhhhccCCCceeeeeCHHHHH
Q 028873 8 IALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFE 43 (202)
Q Consensus 8 i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~ 43 (202)
-||-|.||.+|...+..-..-..-.++|-+|.+-.+
T Consensus 170 YtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme 205 (655)
T COG2015 170 YTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFME 205 (655)
T ss_pred eecccccccCCeeeccCHHHcccCceeEecchhHHH
Confidence 389999999999888644333445799999998654
No 53
>PRK09875 putative hydrolase; Provisional
Probab=66.77 E-value=15 Score=30.47 Aligned_cols=33 Identities=6% Similarity=-0.118 Sum_probs=24.0
Q ss_pred HHHHHHHHcCC--CEEEEecCCCCCChHHHHHHHh
Q 028873 147 RALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELL 179 (202)
Q Consensus 147 ea~~~~~~~~~--k~lvltHl~~~~~~~~~~~~~~ 179 (202)
+.++++++.|+ +|++++|.....|.+.+.+.++
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~ 201 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMID 201 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH
Confidence 45788888887 9999999986655555554443
No 54
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=60.84 E-value=23 Score=30.78 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCC---cEEEeecCeEEeec
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL---DVQLSYDGLRVPVM 201 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~---~v~~A~DG~~i~l~ 201 (202)
-.+|.+-+|..++.+.+++|.++.+|=..+. .....+.+++ .|. ++.+...|.++.++
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~-~~~~~~~a~~----~g~~~~~~~~~~nG~~~~~~ 418 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGEYRM-LINHTKLAEE----EGYPGENIFILRNGDVLEIN 418 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCcHHH-HHHHHHHHHH----cCCCcccEEEecCCcEEEec
Confidence 3789999999999999999999999933222 1122222332 332 68889999998763
No 55
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=60.34 E-value=33 Score=31.90 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=69.7
Q ss_pred chhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee-eec-----CCCC--CCCcccceE-EEeeCC-Cc
Q 028873 7 TIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL-VDT-----SGII--PGAAVSELQ-FNIIDE-EP 76 (202)
Q Consensus 7 ~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~-~~~-----~~~~--~~~~~~~~~-~~~~~~-~~ 76 (202)
.+||.-.=|++|||-...- -.-..+||++-.+++ |.+.+-|- +.. ++.. ...-...|+ +..+.. ++
T Consensus 56 LLShpd~~hlGaLpY~~~k---~gl~~~VYAT~PV~~-mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~ 131 (764)
T KOG1135|consen 56 LLSHPDILHLGALPYAVGK---LGLNAPVYATLPVIK-MGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQP 131 (764)
T ss_pred EecCCChHHhccchhhHhh---CCccceEEEecchhh-hhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccce
Confidence 3578888899998876421 112378888877654 22221110 000 0000 000001121 222332 44
Q ss_pred eEe----CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCC-----CCcchhhhccCCCEEEEeccC
Q 028873 77 FTV----QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSE-----IPEETYPFLQDCEILIMDALR 134 (202)
Q Consensus 77 ~~~----~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~-----~~~~~~~~~~~~DlLi~e~~~ 134 (202)
..+ .|++|+|+++-|-. ...-|+|. +++|+.|-+. .+.-.++-+.++.+||.++..
T Consensus 132 v~L~gk~~Gl~itaynAGhmi--GGsIWkI~k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~ 200 (764)
T KOG1135|consen 132 VALKGKGSGLTITAYNAGHMI--GGSIWKISKVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANH 200 (764)
T ss_pred EEeccccCceEEeeecCCCcc--CceEEEEEecCceEEEEEecccchhcccCCccccccCCcceEEecccc
Confidence 443 47899999999977 45568885 8999999964 232344566678999999754
No 56
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=48.56 E-value=37 Score=28.42 Aligned_cols=67 Identities=7% Similarity=0.094 Sum_probs=48.0
Q ss_pred EEccEEEeCC-CCCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028873 101 RFGNICYISD-VSEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 101 ~i~~~~y~~D-t~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
+|+++.|.+- .... ++.++.++++|++|+-- ++.. +.--++...+..+.+++.+++++++.-+..+.
T Consensus 152 ~I~~v~l~~~~~~~~-~~a~~AI~~AD~Iv~gPGSlyT-SI~P~Llv~gI~eAi~~s~a~kV~v~N~~~~~ 220 (308)
T cd07187 152 PIKRVFLEPPDPKAN-PEALEAIEEADLIVYGPGSLYT-SILPNLLVKGIAEAIRASKAPKVYICNLMTQP 220 (308)
T ss_pred CceEEEEECCCCCCC-HHHHHHHHhCCEEEECCCccHH-HhhhhcCchhHHHHHHhCCCCEEEEecCCCCC
Confidence 5557888764 4444 46889999999988742 2221 33457888888888888889999988886654
No 57
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=48.30 E-value=72 Score=26.17 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=40.8
Q ss_pred cEEEeCCCCCCCcchhhhc-cCCCEEEEeccCCCCC---CCCCCCHHHHHHHHHH-------cCCCEEEEecCCCCCChH
Q 028873 104 NICYISDVSEIPEETYPFL-QDCEILIMDALRPDRS---SSTHFGLPRALEEVRK-------IQPKRTLFIGMMHLMDHE 172 (202)
Q Consensus 104 ~~~y~~Dt~~~~~~~~~~~-~~~DlLi~e~~~~~~~---~~~H~~~~ea~~~~~~-------~~~k~lvltHl~~~~~~~ 172 (202)
++.|.-+. ++..+.+ .|+|+++.-.-...+. -....+.+++++.+++ .++.-++|.|=.|-..++
T Consensus 153 T~~yvf~~----e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 153 TTAYVFNE----EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp E--EE-SH----HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred eeeeecCH----HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 45565443 2233333 4899999998776542 2356788888877655 478899999988888898
Q ss_pred HHHHHHhh
Q 028873 173 KVNEELLK 180 (202)
Q Consensus 173 ~~~~~~~~ 180 (202)
++...+++
T Consensus 229 D~~~~l~~ 236 (268)
T PF09370_consen 229 DAQYVLRN 236 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88777765
No 58
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=47.60 E-value=42 Score=28.17 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=45.5
Q ss_pred EccEEEeC-CCCCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 028873 102 FGNICYIS-DVSEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 167 (202)
Q Consensus 102 i~~~~y~~-Dt~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~ 167 (202)
|+++.|.+ +.... ++..+.++++|++|+-- ++.. +.--++...+..+..++.+++++++.-+..
T Consensus 150 I~~v~l~~~~~~a~-~~al~AI~~ADlIvlgPGSlyT-SIiPnLlv~gI~eAI~~s~a~kV~v~N~~t 215 (310)
T TIGR01826 150 IDRVRLEPEDVPAL-REAVEAIREADLIILGPGSLYT-SIIPNLLVPEIAEALRESKAPKVYVCNLMT 215 (310)
T ss_pred ceEEEEeCCCCCCC-HHHHHHHHhCCEEEECCCcCHH-HhchhcCchhHHHHHHhCCCCEEEEeCCCC
Confidence 55888888 44555 46889999999988842 2221 234567778888888888888888877753
No 59
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=44.96 E-value=58 Score=28.52 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=46.0
Q ss_pred cEEEeCCCCC--CCcchhhhcc--CCCEEEEeccCCCCCCCCCCCHHHHHH--------HHHHcCCCEEEEecCCCCCC
Q 028873 104 NICYISDVSE--IPEETYPFLQ--DCEILIMDALRPDRSSSTHFGLPRALE--------EVRKIQPKRTLFIGMMHLMD 170 (202)
Q Consensus 104 ~~~y~~Dt~~--~~~~~~~~~~--~~DlLi~e~~~~~~~~~~H~~~~ea~~--------~~~~~~~k~lvltHl~~~~~ 170 (202)
.++||||-++ ++.++-+.++ |+-++=.|+..+ -|.+-++++.+. +.+++|+++++|.-.|...|
T Consensus 263 av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRY---fW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGAD 338 (456)
T COG3946 263 AVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRY---FWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGAD 338 (456)
T ss_pred EEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhh---hhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccch
Confidence 5899999986 4445556664 466666666543 578888877654 33557999999999998875
No 60
>PRK13681 hypothetical protein; Provisional
Probab=44.29 E-value=5.9 Score=21.64 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=8.6
Q ss_pred Ccccccchhh
Q 028873 1 MLASFSTIAL 10 (202)
Q Consensus 1 ~~~~~~~i~h 10 (202)
||||++.|.|
T Consensus 24 mLaGy~~i~~ 33 (35)
T PRK13681 24 MLAGYTFILR 33 (35)
T ss_pred eeeeeEEEEe
Confidence 7899999887
No 61
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=42.73 E-value=29 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEe
Q 028873 140 STHFGLPRALEEVRKIQPKRTLFI 163 (202)
Q Consensus 140 ~~H~~~~ea~~~~~~~~~k~lvlt 163 (202)
.-|++..|..++++..++++++=|
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEcc
Confidence 569999999999999999999844
No 62
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=42.66 E-value=51 Score=24.36 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=23.9
Q ss_pred cCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCC
Q 028873 123 QDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHL 168 (202)
Q Consensus 123 ~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~ 168 (202)
.|+| +|+||+-. +...+.++.-.+.|+||++++.-+.+
T Consensus 86 ~gvD-iVie~tG~-------f~~~~~~~~hl~~GakkViisap~~~ 123 (149)
T smart00846 86 LGVD-IVVECTGK-------FTTREKASAHLKAGAKKVIISAPAKD 123 (149)
T ss_pred cCCe-EEEecccc-------ccchHHHHHHHHcCCCEEEeCCCCCC
Confidence 3788 78899521 22223333334469999999996654
No 63
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=39.72 E-value=83 Score=23.13 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHcCCCEEEEe---cCCCCCC
Q 028873 144 GLPRALEEVRKIQPKRTLFI---GMMHLMD 170 (202)
Q Consensus 144 ~~~ea~~~~~~~~~k~lvlt---Hl~~~~~ 170 (202)
..++....+++.++++++|. |+|.+..
T Consensus 59 av~eI~~~a~kv~~~~ivlyPyAHLSs~La 88 (138)
T PF08915_consen 59 AVEEIKWVAKKVKAKRIVLYPYAHLSSSLA 88 (138)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE-GGGSSSB-
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCCcC
Confidence 35678889999999999985 8887773
No 64
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=39.57 E-value=58 Score=27.25 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHcCC--CEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCe
Q 028873 144 GLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 196 (202)
Q Consensus 144 ~~~ea~~~~~~~~~--k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~ 196 (202)
...|.++++++.|+ +|+++.|+....|.+-+.+.++. ++.+.+|..
T Consensus 168 ~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~-------G~~l~~D~~ 215 (308)
T PF02126_consen 168 MGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADR-------GVYLEFDTI 215 (308)
T ss_dssp CHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHT-------T-EEEETTT
T ss_pred CHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhc-------CCEEEecCC
Confidence 46688899888874 79999999965565555554442 567777765
No 65
>PTZ00175 diphthine synthase; Provisional
Probab=38.70 E-value=1.2e+02 Score=24.82 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=19.7
Q ss_pred CCCCCCCcchhhhccCCCEEEEecc
Q 028873 109 SDVSEIPEETYPFLQDCEILIMDAL 133 (202)
Q Consensus 109 ~Dt~~~~~~~~~~~~~~DlLi~e~~ 133 (202)
||.+.++....+.+++||++++|..
T Consensus 11 Gdp~lLTlkal~~L~~ADvV~~d~~ 35 (270)
T PTZ00175 11 GDEKDITVKGLEAVKSADVVYLESY 35 (270)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecc
Confidence 4666666677789999999999873
No 66
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=38.15 E-value=1e+02 Score=25.15 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=37.8
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCC--C----CC---CCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSS--S----TH---FGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~--~----~H---~~~~ea~~~~~~~~~k~lvltH 164 (202)
.+-+|...- +++.+.++|+|.++|=|....... . .. -..+..++.|++.++||+|.|=
T Consensus 49 ~~~~Di~d~-~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 49 YIQGDITDP-ESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred EEEeccccH-HHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 556777533 467788999999999876543110 0 00 1224556677788999998774
No 67
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=37.14 E-value=35 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=23.8
Q ss_pred cEEEeCCCCCCCc-------------chhhhcc---CCCEEEEeccCC
Q 028873 104 NICYISDVSEIPE-------------ETYPFLQ---DCEILIMDALRP 135 (202)
Q Consensus 104 ~~~y~~Dt~~~~~-------------~~~~~~~---~~DlLi~e~~~~ 135 (202)
.++|.+|+..+|= +..+++. |+|++|+-|+-.
T Consensus 25 ~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA 72 (251)
T TIGR00067 25 HYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTA 72 (251)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 6899999986642 2445555 799999999753
No 68
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.53 E-value=1.1e+02 Score=20.51 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=35.8
Q ss_pred hhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHh
Q 028873 118 TYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELL 179 (202)
Q Consensus 118 ~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~ 179 (202)
+.+.++.+|++|+=+.+ -+|-....+.+.|++.+.+ +++++ ......+++.++
T Consensus 42 l~~~i~~aD~VIv~t~~-----vsH~~~~~vk~~akk~~ip-~~~~~---~~~~~~l~~~l~ 94 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDY-----VSHNAMWKVKKAAKKYGIP-IIYSR---SRGVSSLERALE 94 (97)
T ss_pred HHHhcCCCCEEEEEeCC-----cChHHHHHHHHHHHHcCCc-EEEEC---CCCHHHHHHHHH
Confidence 55677889999996543 4689999999999998854 44444 223445544444
No 69
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=35.96 E-value=64 Score=27.00 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=49.7
Q ss_pred EEccEEEeC--CCCCCCcchhhhccCCCEEEEe-ccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028873 101 RFGNICYIS--DVSEIPEETYPFLQDCEILIMD-ALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 101 ~i~~~~y~~--Dt~~~~~~~~~~~~~~DlLi~e-~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
+++++.|.+ |..+.+ +.++.++++|++|+- .+... +.--++...+..+.+++.++++++..-+--..
T Consensus 159 ~i~~V~~~~~e~a~~~p-~vl~AI~~AD~IVlGPgsp~T-SI~P~LlVpgI~eAL~~s~A~vV~Vspiig~~ 228 (303)
T cd07186 159 EVRDVRFVGAEEARPAP-EVLEAIEDADLVIIGPSNPVT-SIGPILALPGIREALRDKKAPVVAVSPIIGGK 228 (303)
T ss_pred CeEEEEeCCcccCCCCH-HHHHHHHhCCEEEECCCccHH-HhhhhccchhHHHHHHhCCCCEEEEcCCCCCC
Confidence 344677766 556665 688999999988873 22221 34568999999999999999999998877765
No 70
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=35.06 E-value=35 Score=29.19 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 138 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 138 ~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
...||.--.-+..++....+.--+.+||.|+.+.-.+++.+.+..+.+. |-.+-.||++|
T Consensus 265 TNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~Fe-nP~FR~DGLKi 324 (554)
T KOG2535|consen 265 TNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFE-NPAFRPDGLKI 324 (554)
T ss_pred ccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHHHHHhc-CcCcCCCccee
Confidence 4588986655554443333444566999999853233322222222332 45667788776
No 71
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=34.30 E-value=88 Score=28.04 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=37.0
Q ss_pred eeEEEccEEEeCCCCCCCc---chh-hhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHc------CCCEEEEec
Q 028873 98 LGFRFGNICYISDVSEIPE---ETY-PFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI------QPKRTLFIG 164 (202)
Q Consensus 98 ~gy~i~~~~y~~Dt~~~~~---~~~-~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~------~~k~lvltH 164 (202)
||+-++.=.+.+|-+--.+ +++ .+++|+|+||.|= ....+|++|+-++.... |..-+++||
T Consensus 128 yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE------PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 128 YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE------PTAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred hCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC------CcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4444443344555532111 233 4557999999863 36789999988876443 455677777
No 72
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=34.20 E-value=76 Score=28.65 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=38.2
Q ss_pred ceEe-CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCc--chh--hhccCCCEEEEec
Q 028873 76 PFTV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPE--ETY--PFLQDCEILIMDA 132 (202)
Q Consensus 76 ~~~~-~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~--~~~--~~~~~~DlLi~e~ 132 (202)
.+.+ |-+.|+|+-.-|.- .+.-|.|. +++|.++++..+- ..+ .-+|++|+||.-.
T Consensus 203 kidlfga~~vtplsSG~~l--GSsnW~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~ 266 (653)
T KOG1138|consen 203 KIDLFGALIVTPLSSGYDL--GSSNWLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTG 266 (653)
T ss_pred eeeccceEEEEeccccccc--cccceEEecCCcceEEEecCcccccCCccccccccccccEEEEec
Confidence 3444 57888888777766 56667776 8999998875431 222 3457899999864
No 73
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=33.59 E-value=1.7e+02 Score=23.23 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=24.4
Q ss_pred chhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 117 ETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 117 ~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
+.++-+.++|++|.=...++ ++ -+..+.+++.|+|-++.-=
T Consensus 44 e~Lp~i~~~Dl~I~y~lHPD------l~-~~l~~~~~e~g~kavIvp~ 84 (217)
T PF02593_consen 44 EYLPKIPEADLLIAYGLHPD------LT-YELPEIAKEAGVKAVIVPS 84 (217)
T ss_pred HHccCCCCCCEEEEeccCch------hH-HHHHHHHHHcCCCEEEEec
Confidence 34444678898887444433 22 2566666667777776533
No 74
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=32.77 E-value=46 Score=25.47 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=20.0
Q ss_pred CCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEe
Q 028873 156 QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVP 199 (202)
Q Consensus 156 ~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~ 199 (202)
++.-++.-|+++.. ...+.+.+++. ...+|..|.||+.+.
T Consensus 26 ~~~ivivqH~~~~~-~~~l~~~L~~~---t~l~V~~a~~g~~l~ 65 (182)
T PF01339_consen 26 PAAIVIVQHMPPGF-TSSLAERLARH---TSLPVREAEDGEPLE 65 (182)
T ss_dssp SSEEEEEE---TTH-HHHHHHHHHHH---SSSEEEE--TT-B--
T ss_pred CceEEEEECCCCCc-chHHHHHHhCc---CCCeEEEcCCCCEec
Confidence 45678888999987 44554555542 334778888887654
No 75
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=31.59 E-value=1.1e+02 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHHHHHcC--CCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecC
Q 028873 146 PRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDG 195 (202)
Q Consensus 146 ~ea~~~~~~~~--~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG 195 (202)
-|.+++..+-| +.++.+-|+.+.-+.-..++.+... ++.+++|+
T Consensus 179 ~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~------Ga~l~fD~ 224 (316)
T COG1735 179 LEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADR------GAFLEFDR 224 (316)
T ss_pred HHHHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHhc------CceEEecc
Confidence 35566666655 5799999999988766666666642 45556664
No 76
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=31.54 E-value=1e+02 Score=24.04 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred cEEEeCCCCCC--Ccchhhhc--cCCCEEEEeccCCCCCCCCCCCHHHHHHHH--------HHcCCCEEEEecCCCCCC
Q 028873 104 NICYISDVSEI--PEETYPFL--QDCEILIMDALRPDRSSSTHFGLPRALEEV--------RKIQPKRTLFIGMMHLMD 170 (202)
Q Consensus 104 ~~~y~~Dt~~~--~~~~~~~~--~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~--------~~~~~k~lvltHl~~~~~ 170 (202)
.++||+|-++- +..+.+.+ +|.-++=+|+... -|.+-+++++..-+ ++.+.++++|.-.|-..|
T Consensus 5 ~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGAD 80 (192)
T PF06057_consen 5 AVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRY---FWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGAD 80 (192)
T ss_pred EEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHH---HhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCch
Confidence 37889999864 34455555 3677777777643 35566776665533 445899999999998875
No 77
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.35 E-value=53 Score=27.46 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=35.6
Q ss_pred hhccC-CCE-EEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028873 120 PFLQD-CEI-LIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 120 ~~~~~-~Dl-Li~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
+++++ .|+ ||++.|-+++-.|.+++.+++.+++++ ++|-++..-+.|..
T Consensus 111 KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arE-NaKDIia~GFDp~k 161 (397)
T KOG2145|consen 111 KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARE-NAKDIIAVGFDPKK 161 (397)
T ss_pred HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHh-cccceEEeccCCcc
Confidence 44444 344 666777666566899999999999875 67878877777754
No 78
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.86 E-value=1.7e+02 Score=25.91 Aligned_cols=48 Identities=8% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHH
Q 028873 124 DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKV 174 (202)
Q Consensus 124 ~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~ 174 (202)
+.|++++|+.-.. +......++..++++...+..++|+ ++......++
T Consensus 320 ~~DvVLIDTaGRs--~kd~~lm~EL~~~lk~~~PdevlLV-LsATtk~~d~ 367 (436)
T PRK11889 320 RVDYILIDTAGKN--YRASETVEEMIETMGQVEPDYICLT-LSASMKSKDM 367 (436)
T ss_pred CCCEEEEeCcccc--CcCHHHHHHHHHHHhhcCCCeEEEE-ECCccChHHH
Confidence 5799999975321 1112223444444444444555555 5544434443
No 79
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=27.73 E-value=3.6e+02 Score=24.72 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=54.8
Q ss_pred cEEEeCCCCCCCcc----hhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCC--ChHHHHHH
Q 028873 104 NICYISDVSEIPEE----TYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM--DHEKVNEE 177 (202)
Q Consensus 104 ~~~y~~Dt~~~~~~----~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~--~~~~~~~~ 177 (202)
++++++...+-.+. +.+.+....+-+....+..--..||.+.+|...+.+..++|.++-+|=..+. .+.++.
T Consensus 329 ~vIfss~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la-- 406 (555)
T COG0595 329 TVIFSSSPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLA-- 406 (555)
T ss_pred eEEEeccCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHHHH--
Confidence 67888877554322 2222222333333433311123899999999999999999999999833322 122221
Q ss_pred HhhccccCCCcEEEeecCeEEeec
Q 028873 178 LLKLMETEGLDVQLSYDGLRVPVM 201 (202)
Q Consensus 178 ~~~~~~~~~~~v~~A~DG~~i~l~ 201 (202)
.+.. ....++.....|..+.+.
T Consensus 407 -~~~G-~~~~~i~i~~nG~v~~l~ 428 (555)
T COG0595 407 -EEEG-IPQENIFILRNGDVLELE 428 (555)
T ss_pred -HhcC-CCcccEEEecCceEEEec
Confidence 1110 011268889999888763
No 80
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=25.73 E-value=21 Score=20.34 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=9.4
Q ss_pred hhhhhccccCChhhh
Q 028873 8 IALFVGFLPMGLDDL 22 (202)
Q Consensus 8 i~h~H~DHi~GL~~l 22 (202)
|.++|.|| .|.|.-
T Consensus 1 v~~yH~D~-~GtP~~ 14 (41)
T PF03527_consen 1 VYYYHTDH-LGTPQE 14 (41)
T ss_pred CeEEecCC-CCCcHH
Confidence 45789999 566543
No 81
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=25.55 E-value=2.2e+02 Score=24.45 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 140 STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 140 ~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
..|....-..++.+...+|.+.|.|=.. ..-+-+++.+++ +++.++.+.-.|.++.+
T Consensus 389 SaHaDAkGIm~li~~csPknVmlVHGE~-~kM~~Lk~ki~~---e~~ip~~mPaNGetv~i 445 (501)
T KOG1136|consen 389 SAHADAKGIMQLIKQCSPKNVMLVHGEK-SKMKFLKEKIES---EFDIPTFMPANGETVVI 445 (501)
T ss_pred ccccCchhHHHHHHhcCcceEEEEeccc-hhhHHHHHhhHh---hcCCceeeCCCCCEEEe
Confidence 5799999999999999999999999322 223334333443 35556666666766654
No 82
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=24.81 E-value=1.4e+02 Score=24.34 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=43.8
Q ss_pred cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 104 NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 104 ~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++..+|--.+.. .+..|+|..-+++=.+..- ..|+.-..+..+.|++-+..-+++.|
T Consensus 84 KimvTTSR~PSs-rL~~FaKelkLvfPNaqr~---nRG~~~~~~lv~a~ra~~~Td~iivH 140 (290)
T KOG2781|consen 84 KIMVTTSRDPSS-RLKMFAKELKLVFPNAQRL---NRGNYVVGELVDAARANGVTDLIIVH 140 (290)
T ss_pred cEEEEeCCCchH-HHHHHHHhheEeccChhhh---cccceeHHHHHHHHHHCCCceEEEEe
Confidence 777777666654 6889999999887666544 47899999999999988866666655
No 83
>PRK00865 glutamate racemase; Provisional
Probab=24.64 E-value=88 Score=25.31 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=22.9
Q ss_pred cEEEeCCCCCCCc-------------chhhhc--cCCCEEEEeccCC
Q 028873 104 NICYISDVSEIPE-------------ETYPFL--QDCEILIMDALRP 135 (202)
Q Consensus 104 ~~~y~~Dt~~~~~-------------~~~~~~--~~~DlLi~e~~~~ 135 (202)
.++|.+|+..+|- +..+++ .|+|.+|+-|+-.
T Consensus 32 ~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa 78 (261)
T PRK00865 32 HIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTA 78 (261)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 6999999986542 233444 4699999999753
No 84
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=24.51 E-value=1.2e+02 Score=25.41 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=43.7
Q ss_pred EccEEEeC-C-CCCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCC
Q 028873 102 FGNICYIS-D-VSEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM 166 (202)
Q Consensus 102 i~~~~y~~-D-t~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~ 166 (202)
|+++.|.+ + ....+ +..+.+.++|++|+-- ++.. +.--++......+..++.++++++..-+.
T Consensus 151 I~~v~l~~~~~~~~~~-~~l~AI~~ADlIvlgPGSlyT-SI~P~Llv~gi~eAi~~s~a~kV~V~ni~ 216 (309)
T cd07044 151 IDRVFLTPVDEASPSR-EVLEAIEKADNIVIGPGSLYT-SILPNISVPGIREALKKTXAKKVYVSNIX 216 (309)
T ss_pred ceEEEEcCCCCCCCCH-HHHHHHHhCCEEEECCCcCHH-HhhhhcCcHhHHHHHHhcCCCeEEECCCC
Confidence 44777766 3 45554 6889999999988843 2221 23457778888888888888888887773
No 85
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.39 E-value=1.7e+02 Score=25.61 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 144 GLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 144 ~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
...++.+..+..++..+++|.+.....+..+...+.+ .+.++..--+|..|
T Consensus 346 ~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~~~~~----~~lPv~yit~Gq~V 396 (424)
T PRK05703 346 DLKDIYKHFSRLPLDGLIFTKLDETSSLGSILSLLIE----SGLPISYLTNGQRV 396 (424)
T ss_pred HHHHHHHHhCCCCCCEEEEecccccccccHHHHHHHH----HCCCEEEEeCCCCC
Confidence 3444445555567788999999887765555444443 33366666666655
No 86
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.68 E-value=87 Score=23.05 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=32.8
Q ss_pred eCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEe
Q 028873 108 ISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 163 (202)
Q Consensus 108 ~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvlt 163 (202)
.+|.... +.+.+.++++|.+|+=.....+ .--......+.+++.+++++++.
T Consensus 45 ~~d~~d~-~~~~~al~~~d~vi~~~~~~~~---~~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 45 QGDLFDP-DSVKAALKGADAVIHAAGPPPK---DVDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp ESCTTCH-HHHHHHHTTSSEEEECCHSTTT---HHHHHHHHHHHHHHTTSSEEEEE
T ss_pred eeeehhh-hhhhhhhhhcchhhhhhhhhcc---cccccccccccccccccccceee
Confidence 5666432 3577888999999986543321 12234455666677899888763
No 87
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=23.11 E-value=3.2e+02 Score=21.51 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=31.8
Q ss_pred chhhhccCCCEEEEe--ccCCCC-----C--CCCCCCHHHHHHHHHHcCCCEEEEe
Q 028873 117 ETYPFLQDCEILIMD--ALRPDR-----S--SSTHFGLPRALEEVRKIQPKRTLFI 163 (202)
Q Consensus 117 ~~~~~~~~~DlLi~e--~~~~~~-----~--~~~H~~~~ea~~~~~~~~~k~lvlt 163 (202)
.+.++++++|+.++. +...+. . .....+.++.++.++++|..-+-+-
T Consensus 25 ~v~~~~~~aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~G~d~~~la 80 (239)
T smart00854 25 GVKPLLRAADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVSLA 80 (239)
T ss_pred HHHHHHhcCCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHHHHhCCCEEEec
Confidence 466778899999986 333221 1 1223466788999999999877654
No 88
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=22.65 E-value=2.4e+02 Score=23.90 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=45.3
Q ss_pred EccEEEeC-CCCCCCcchhhhccCCCEEEEe-ccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028873 102 FGNICYIS-DVSEIPEETYPFLQDCEILIMD-ALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 102 i~~~~y~~-Dt~~~~~~~~~~~~~~DlLi~e-~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
+.++.|.+ +.-.-+++.++.++++|+.|+- .++.. +.--++...+..+.+++..+++++..-++-..
T Consensus 166 v~~V~~~~~~~~~a~~eaveAI~~AD~IviGPgSl~T-SIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~ 234 (323)
T COG0391 166 VHRVRLEGPEKPSAAPEAVEAIKEADLIVIGPGSLFT-SILPILLLPGIAEALRETVAPIVYVCNLMTQA 234 (323)
T ss_pred ceEEEEecCCCCCCCHHHHHHHHhCCEEEEcCCccHh-hhchhhchhHHHHHHHhCCCCEEEeccCCCCC
Confidence 55788883 3322334788999999987773 33221 23456778888888888888888877777655
No 89
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.40 E-value=1e+02 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=22.6
Q ss_pred cEEEeCCCCCCCc-------------chhhhc--cCCCEEEEeccCC
Q 028873 104 NICYISDVSEIPE-------------ETYPFL--QDCEILIMDALRP 135 (202)
Q Consensus 104 ~~~y~~Dt~~~~~-------------~~~~~~--~~~DlLi~e~~~~ 135 (202)
.++|.+|+..+|- ++.+++ ++++++|+-|+-.
T Consensus 32 ~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTA 78 (269)
T COG0796 32 DIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTA 78 (269)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 7999999986642 233333 3599999999764
No 90
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=22.18 E-value=52 Score=19.79 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=5.3
Q ss_pred CEEEEecC
Q 028873 158 KRTLFIGM 165 (202)
Q Consensus 158 k~lvltHl 165 (202)
+|++|||+
T Consensus 50 rrlvlthm 57 (66)
T PF13082_consen 50 RRLVLTHM 57 (66)
T ss_pred cEEEEEEE
Confidence 56677775
No 91
>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi
Probab=21.94 E-value=1e+02 Score=22.18 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=28.8
Q ss_pred eeeeEEEc------cEEEeCCCCCCCcchhhhccCCCEEEEeccC
Q 028873 96 RSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALR 134 (202)
Q Consensus 96 ~~~gy~i~------~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~ 134 (202)
.++.|+++ ++..=+=.+.+-|...+...+.|.||++.+.
T Consensus 65 ~nf~Y~Lel~~n~RkL~we~~PRSIrds~~~~~~~~D~Lii~~~~ 109 (127)
T cd03829 65 ENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNSDCLVFDTSI 109 (127)
T ss_pred hcceEEEEEcCCCcEEEeecCCccHHHhhHHHhhcCcceEEechH
Confidence 57888887 6777665665666666667789999998653
No 92
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=21.85 E-value=2.5e+02 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 140 STHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 140 ~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
..|....+..++++++.+++++|.|
T Consensus 396 aAhvdy~q~s~fi~~i~~~~lilVH 420 (668)
T KOG1137|consen 396 AAHVDYLQNSEFIADITPPHLILVH 420 (668)
T ss_pred eechhhhhhHHHHHHhCCCeEEEEe
Confidence 5699999999999999999999999
No 93
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.70 E-value=4.5e+02 Score=22.60 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=39.3
Q ss_pred hhccCCCEEEEeccCCCC-CC-CCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeE
Q 028873 120 PFLQDCEILIMDALRPDR-SS-STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLR 197 (202)
Q Consensus 120 ~~~~~~DlLi~e~~~~~~-~~-~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~ 197 (202)
.++.++|+|++|=.|..- +- +.-| -.|.+++-++.+-.-+++|| ++.+.++ .|..|-+-+||..
T Consensus 178 Ala~~~~IlLMDEaFSALDPLIR~~m-QdeLl~Lq~~l~KTIvFitH--------DLdEAlr-----iG~rIaimkdG~i 243 (386)
T COG4175 178 ALANDPDILLMDEAFSALDPLIRTEM-QDELLELQAKLKKTIVFITH--------DLDEALR-----IGDRIAIMKDGEI 243 (386)
T ss_pred HHccCCCEEEecCchhhcChHHHHHH-HHHHHHHHHHhCCeEEEEec--------CHHHHHh-----ccceEEEecCCeE
Confidence 345689999998766531 11 1111 13566666666655566666 3333333 4447788888887
Q ss_pred Eee
Q 028873 198 VPV 200 (202)
Q Consensus 198 i~l 200 (202)
|.+
T Consensus 244 vQ~ 246 (386)
T COG4175 244 VQV 246 (386)
T ss_pred EEe
Confidence 764
No 94
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.41 E-value=2e+02 Score=25.33 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 145 LPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 145 ~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
..++.+..+..++..+++|++......-.+...+.+ .+.++..--+|..|
T Consensus 316 ~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~~~~~----~~lPi~yvt~Gq~V 365 (420)
T PRK14721 316 LDEVISAYQGHGIHGCIITKVDEAASLGIALDAVIR----RKLVLHYVTNGQKV 365 (420)
T ss_pred HHHHHHHhcCCCCCEEEEEeeeCCCCccHHHHHHHH----hCCCEEEEECCCCc
Confidence 345555555678899999999887765444443332 33367666677665
No 95
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=21.39 E-value=1.7e+02 Score=25.67 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=34.5
Q ss_pred hhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcC---CCEEEEecCCCCCCh
Q 028873 120 PFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQ---PKRTLFIGMMHLMDH 171 (202)
Q Consensus 120 ~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~---~k~lvltHl~~~~~~ 171 (202)
.++..+|++=||+..++ ++++.++++.++ +.+.+...+||.+|.
T Consensus 279 A~ApyaDl~W~ET~~Pd--------le~ak~Fae~Ih~~~P~~~LaYN~SPSFNW 325 (433)
T COG2224 279 AYAPYADLLWCETSTPD--------LEEARQFAEAIHAKYPGKLLAYNCSPSFNW 325 (433)
T ss_pred hcCcccceEEEecCCCC--------HHHHHHHHHHHHHhCCcceeeecCCCCcCc
Confidence 34445788888887664 789999998876 578999999998864
No 96
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.81 E-value=2.8e+02 Score=21.34 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 143 FGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 143 ~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
-..+++.++.+..+.+.+++|.+......-.+...+.+ .+.++.+--+|..|
T Consensus 128 ~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~~~----~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 128 EDLEQALAFYEAFGIDGLILTKLDETARLGALLSLAYE----SGLPISYITTGQRV 179 (196)
T ss_dssp HHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHHHH----HTSEEEEEESSSST
T ss_pred HHHHHHHHHhhcccCceEEEEeecCCCCcccceeHHHH----hCCCeEEEECCCCh
Confidence 34556777777788999999999997766555443333 33367776677655
No 97
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=20.68 E-value=1.7e+02 Score=19.91 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=32.9
Q ss_pred cCCCEEEEecc-CCCCCCCCCCCHHHHHHHHHHc-CCCEEEEecCCCCCChHHHHHHH
Q 028873 123 QDCEILIMDAL-RPDRSSSTHFGLPRALEEVRKI-QPKRTLFIGMMHLMDHEKVNEEL 178 (202)
Q Consensus 123 ~~~DlLi~e~~-~~~~~~~~H~~~~ea~~~~~~~-~~k~lvltHl~~~~~~~~~~~~~ 178 (202)
+++|++|+.+. ..+.. -.-......++.+.- .-+++++|-..+....+++.+..
T Consensus 35 e~AD~iiiNTC~V~~~A--e~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~~~ 90 (98)
T PF00919_consen 35 EEADVIIINTCTVRESA--EQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEELKKEF 90 (98)
T ss_pred ccCCEEEEEcCCCCcHH--HHHHHHHHHHHHHhcCCCCEEEEEeCccccChHHHHhhC
Confidence 57999999854 44311 112233344444333 34789999999988777776543
No 98
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=20.65 E-value=2.3e+02 Score=24.83 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=45.4
Q ss_pred hhhhccCCCEEEEeccCCCC--------------------------CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCCh
Q 028873 118 TYPFLQDCEILIMDALRPDR--------------------------SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH 171 (202)
Q Consensus 118 ~~~~~~~~DlLi~e~~~~~~--------------------------~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~ 171 (202)
.+..++++|+.++|+.-... ....+-...++.+-....+.+.+++|=+...-..
T Consensus 275 ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 275 AIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSL 354 (407)
T ss_pred HHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCch
Confidence 45677889999999743220 0122334444444445566788888888776655
Q ss_pred HHHHHHHhhccccCCCcEEEeecCeEEe
Q 028873 172 EKVNEELLKLMETEGLDVQLSYDGLRVP 199 (202)
Q Consensus 172 ~~~~~~~~~~~~~~~~~v~~A~DG~~i~ 199 (202)
-.+-..+.+ .+.+|..--+|+.|+
T Consensus 355 G~~~s~~~e----~~~PV~YvT~GQ~VP 378 (407)
T COG1419 355 GNLFSLMYE----TRLPVSYVTNGQRVP 378 (407)
T ss_pred hHHHHHHHH----hCCCeEEEeCCCCCC
Confidence 444433333 222666666776664
No 99
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.46 E-value=48 Score=27.72 Aligned_cols=24 Identities=8% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCCcchhhhccCCCEEEEeccCC
Q 028873 112 SEIPEETYPFLQDCEILIMDALRP 135 (202)
Q Consensus 112 ~~~~~~~~~~~~~~DlLi~e~~~~ 135 (202)
+.+++++....+++||+|+|.+-.
T Consensus 287 rrvsqeLa~l~~daDLVViEGMGR 310 (348)
T KOG4584|consen 287 RRVSQELAYLSSDADLVVIEGMGR 310 (348)
T ss_pred HhhhHHHHHHhcCCCEEEEeccch
Confidence 345667888889999999998743
No 100
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=20.28 E-value=1.8e+02 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=12.5
Q ss_pred cEEEeecCeEEeec
Q 028873 188 DVQLSYDGLRVPVM 201 (202)
Q Consensus 188 ~v~~A~DG~~i~l~ 201 (202)
++.+|++|.++++.
T Consensus 18 paYiA~~G~VYDvS 31 (81)
T COG4892 18 PAYIAVNGTVYDVS 31 (81)
T ss_pred CeEEEECCEEEeec
Confidence 89999999999874
Done!