Query 028873
Match_columns 202
No_of_seqs 115 out of 1158
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md7_A Beta-lactamase-like; ss 100.0 6.4E-35 2.2E-39 239.5 19.0 186 6-202 103-293 (293)
2 3jxp_A Coenzyme PQQ synthesis 100.0 4.6E-32 1.6E-36 225.3 14.7 178 6-200 86-305 (321)
3 2cbn_A Ribonuclease Z; phospho 100.0 1.3E-31 4.4E-36 220.2 14.8 182 5-200 60-306 (306)
4 3zwf_A Zinc phosphodiesterase 100.0 1.1E-31 3.9E-36 226.8 13.6 184 6-202 56-359 (368)
5 1y44_A Ribonuclease Z; zinc-de 100.0 1.6E-30 5.5E-35 215.2 15.0 182 6-201 59-305 (320)
6 3g1p_A Protein PHNP; C-P lyase 100.0 5.5E-31 1.9E-35 212.2 8.1 170 6-200 72-251 (258)
7 1zkp_A Hypothetical protein BA 100.0 3.2E-28 1.1E-32 196.7 17.6 175 6-199 79-267 (268)
8 2e7y_A TRNAse Z; tRNA maturati 100.0 3.7E-29 1.3E-33 202.7 11.5 183 6-200 44-280 (280)
9 3bv6_A Metal-dependent hydrola 99.8 4.8E-20 1.6E-24 156.1 16.4 180 5-200 136-348 (379)
10 2wyl_A L-ascorbate-6-phosphate 99.8 9.5E-20 3.2E-24 153.2 17.4 180 5-200 112-323 (360)
11 3rpc_A Possible metal-dependen 99.8 7.2E-20 2.5E-24 147.7 15.2 171 5-200 67-264 (264)
12 3kl7_A Putative metal-dependen 99.8 6.1E-20 2.1E-24 145.9 13.8 143 5-180 68-224 (235)
13 2az4_A Hypothetical protein EF 99.8 3.6E-18 1.2E-22 146.5 14.7 162 6-179 88-273 (429)
14 2p4z_A Metal-dependent hydrola 99.8 5.6E-20 1.9E-24 150.0 1.7 177 5-200 71-284 (284)
15 3bk2_A RNAse J, metal dependen 99.7 1.5E-16 5.3E-21 140.9 13.9 152 6-169 78-251 (562)
16 1vjn_A Zn-dependent hydrolase 99.7 2.6E-16 8.9E-21 123.8 12.6 89 76-169 80-178 (220)
17 4b87_A DNA cross-LINK repair 1 99.7 2E-15 6.8E-20 127.2 14.4 121 6-150 55-183 (367)
18 3zdk_A 5' exonuclease apollo; 99.7 3.3E-15 1.1E-19 124.5 15.4 135 6-165 28-183 (336)
19 3zq4_A Ribonuclease J 1, RNAse 99.6 1.7E-14 5.8E-19 127.5 13.9 148 6-169 70-235 (555)
20 3iek_A Ribonuclease TTHA0252; 99.5 4.7E-14 1.6E-18 121.2 9.9 152 6-166 55-224 (431)
21 3af5_A Putative uncharacterize 99.5 4E-13 1.4E-17 120.8 12.4 187 5-198 251-463 (651)
22 2ycb_A Beta-CAsp RNAse, cleava 99.4 1.6E-12 5.4E-17 116.7 9.2 154 5-165 237-417 (636)
23 2i7x_A Protein CFT2; polyadeny 99.3 8.4E-13 2.9E-17 119.7 6.9 130 6-137 57-219 (717)
24 2i7t_A Cleavage and polyadenyl 99.3 3.8E-12 1.3E-16 110.0 10.6 126 6-136 67-209 (459)
25 2xr1_A Cleavage and polyadenyl 99.3 1.4E-11 4.9E-16 110.5 13.5 186 5-198 240-452 (640)
26 3adr_A Putative uncharacterize 99.1 1.1E-10 3.7E-15 92.9 7.4 155 5-179 53-224 (261)
27 1ycg_A Nitric oxide reductase; 98.9 1.1E-08 3.7E-13 86.3 11.0 89 5-112 75-168 (398)
28 1e5d_A Rubredoxin\:oxygen oxid 98.9 1.1E-08 3.7E-13 86.3 10.6 89 5-112 74-167 (402)
29 2ohh_A Type A flavoprotein FPR 98.8 1.7E-08 5.9E-13 85.2 10.4 90 5-112 78-172 (404)
30 2r2d_A AGR_PTI_140P, Zn-depend 98.8 7.7E-09 2.6E-13 82.9 6.2 141 5-165 106-260 (276)
31 2bib_A CBPE, teichoic acid pho 98.7 5.2E-08 1.8E-12 85.7 10.8 155 5-180 80-272 (547)
32 3l6n_A Metallo-beta-lactamase; 98.7 5.1E-08 1.7E-12 75.4 7.9 86 5-113 71-161 (219)
33 4ax1_B Metallo-beta-lactamase 98.6 3.7E-07 1.3E-11 73.7 11.4 145 5-168 99-254 (303)
34 3m8t_A 'BLR6230 protein; subcl 98.6 5.9E-08 2E-12 78.3 6.2 98 6-112 97-204 (294)
35 2xf4_A Hydroxyacylglutathione 98.6 2.8E-08 9.6E-13 76.4 3.7 100 6-114 52-155 (210)
36 1k07_A FEZ-1 beta-lactamase; m 98.6 1.3E-07 4.6E-12 75.2 7.7 98 5-113 66-177 (263)
37 3dha_A N-acyl homoserine lacto 98.5 1.2E-07 4.1E-12 75.0 6.5 93 5-115 103-200 (254)
38 3hnn_A Putative diflavin flavo 98.5 3.4E-07 1.2E-11 73.0 7.4 87 6-111 83-175 (262)
39 3h3e_A Uncharacterized protein 98.5 2.2E-07 7.4E-12 74.8 6.1 51 144-201 216-266 (267)
40 4efz_A Metallo-beta-lactamase 98.5 2.5E-07 8.6E-12 75.2 6.5 97 5-114 67-178 (298)
41 1sml_A Protein (penicillinase) 98.4 6.9E-07 2.4E-11 71.3 8.4 98 5-113 79-187 (269)
42 1m2x_A Class B carbapenemase B 98.4 6.8E-07 2.3E-11 69.3 7.8 85 5-112 67-156 (223)
43 1xm8_A Glyoxalase II; structur 98.4 2.6E-07 8.9E-12 73.7 5.0 82 5-113 49-134 (254)
44 2q9u_A A-type flavoprotein; fl 98.4 9.5E-07 3.2E-11 74.8 8.1 89 5-112 80-173 (414)
45 4hl2_A Beta-lactamase NDM-1; s 98.4 1.4E-07 4.8E-12 74.2 2.5 92 6-113 89-184 (243)
46 3aj3_A MLR6805 protein, 4-pyri 98.3 5.9E-07 2E-11 71.8 5.8 140 5-166 91-254 (274)
47 4ad9_A Lactb2, beta-lactamase- 98.3 5.6E-06 1.9E-10 66.7 10.9 90 6-112 74-167 (289)
48 1a7t_A Metallo-beta-lactamase; 98.3 9.8E-07 3.3E-11 68.9 6.0 127 5-168 77-210 (232)
49 2vw8_A PA1000, PQSE; quinolone 98.3 2E-06 6.8E-11 69.8 8.0 99 6-112 67-182 (303)
50 1mqo_A Beta-lactamase II; alph 98.2 1.5E-06 5.2E-11 67.5 5.8 86 5-113 81-171 (227)
51 2gcu_A Putative hydroxyacylglu 98.2 1.5E-06 5.2E-11 68.8 5.8 81 5-114 56-146 (245)
52 2fhx_A SPM-1; metallo-beta-lac 98.2 1.6E-06 5.6E-11 68.0 5.4 135 6-167 72-224 (246)
53 3tp9_A Beta-lactamase and rhod 98.2 7.9E-07 2.7E-11 76.9 3.6 87 5-112 54-151 (474)
54 2zwr_A Metallo-beta-lactamase 98.2 1.6E-06 5.5E-11 66.5 4.5 97 5-114 49-148 (207)
55 2qed_A Hydroxyacylglutathione 98.1 2.6E-06 9E-11 67.9 5.4 80 6-113 56-137 (258)
56 2zo4_A Metallo-beta-lactamase 98.1 1.9E-06 6.4E-11 70.3 3.8 146 5-170 65-239 (317)
57 1qh5_A Glyoxalase II, protein 98.1 3.2E-06 1.1E-10 67.6 5.1 79 5-112 49-136 (260)
58 3q6v_A Beta-lactamase; metallo 98.1 1.4E-05 4.6E-10 62.0 8.4 143 5-174 66-221 (233)
59 3r2u_A Metallo-beta-lactamase 98.1 2E-06 6.9E-11 74.3 3.6 87 5-113 75-172 (466)
60 2p18_A Glyoxalase II; metallop 98.1 3.9E-06 1.3E-10 68.8 5.1 86 5-114 87-184 (311)
61 4dik_A Flavoprotein; TM0755, e 98.1 8.7E-06 3E-10 69.3 7.4 87 5-111 92-181 (410)
62 1jjt_A IMP-1 metallo beta-lact 98.0 4E-06 1.4E-10 65.2 4.3 124 6-169 73-202 (228)
63 2y8b_A Metallo-B-lactamase; hy 97.9 9.7E-06 3.3E-10 64.7 4.6 90 5-114 108-201 (265)
64 1ztc_A Hypothetical protein TM 97.9 4.3E-06 1.5E-10 64.9 1.8 97 5-115 76-179 (221)
65 3esh_A Protein similar to meta 97.8 1.3E-05 4.4E-10 64.3 3.2 100 5-115 103-211 (280)
66 3iog_A Beta-lactamase; hydrola 97.7 0.00017 5.7E-09 55.5 8.0 139 5-171 63-211 (227)
67 2cfu_A SDSA1; SDS-hydrolase, l 97.6 0.00017 5.8E-09 64.9 8.3 106 6-113 165-302 (658)
68 1p9e_A Methyl parathion hydrol 97.4 5.2E-05 1.8E-09 62.5 2.7 102 5-115 142-260 (331)
69 4eyb_A Beta-lactamase NDM-1; m 97.2 0.00014 4.7E-09 58.1 2.3 92 6-112 116-210 (270)
70 2p97_A Hypothetical protein; p 96.8 0.0009 3.1E-08 50.8 3.7 80 6-114 60-141 (201)
71 2yhe_A SEC-alkyl sulfatase; hy 95.8 0.0002 6.9E-09 64.4 0.0 106 5-112 174-312 (668)
72 2i7t_A Cleavage and polyadenyl 78.8 1.5 5.2E-05 37.1 3.6 62 140-202 394-458 (459)
73 2ycb_A Beta-CAsp RNAse, cleava 74.1 2.6 8.9E-05 37.4 3.9 58 139-200 576-635 (636)
74 2xr1_A Cleavage and polyadenyl 74.0 3.2 0.00011 37.0 4.4 58 139-200 580-639 (640)
75 3af5_A Putative uncharacterize 73.9 2.8 9.6E-05 37.4 4.1 58 139-200 591-650 (651)
76 3bk2_A RNAse J, metal dependen 72.1 4.3 0.00015 35.5 4.7 58 139-201 380-440 (562)
77 2az4_A Hypothetical protein EF 61.1 7.4 0.00025 32.4 3.9 51 139-200 379-429 (429)
78 3zq4_A Ribonuclease J 1, RNAse 54.4 10 0.00034 33.1 3.7 57 139-200 365-424 (555)
79 2ppv_A Uncharacterized protein 44.0 22 0.00074 29.0 3.9 65 101-167 154-220 (332)
80 3dqp_A Oxidoreductase YLBE; al 41.7 57 0.002 23.7 5.8 59 106-164 45-105 (219)
81 2hl0_A Threonyl-tRNA synthetas 41.4 50 0.0017 23.4 5.0 26 144-169 60-88 (143)
82 3sft_A CHEB, chemotaxis respon 40.5 33 0.0011 25.6 4.2 39 156-198 34-72 (193)
83 3iek_A Ribonuclease TTHA0252; 39.2 33 0.0011 28.6 4.5 55 139-200 377-431 (431)
84 3e8x_A Putative NAD-dependent 37.5 92 0.0031 22.8 6.5 57 105-164 68-130 (236)
85 4b87_A DNA cross-LINK repair 1 35.9 30 0.001 28.4 3.6 41 139-179 318-359 (367)
86 1chd_A CHEB methylesterase; ch 33.6 65 0.0022 24.1 4.9 50 145-198 22-74 (203)
87 3e48_A Putative nucleoside-dip 33.2 17 0.00057 28.0 1.6 59 106-165 48-106 (289)
88 3b9q_A Chloroplast SRP recepto 32.7 85 0.0029 24.7 5.8 65 123-197 218-284 (302)
89 1qyd_A Pinoresinol-lariciresin 31.6 83 0.0028 24.1 5.5 56 107-164 60-116 (313)
90 2o2z_A Hypothetical protein; s 30.4 20 0.00068 29.1 1.6 64 101-166 155-220 (323)
91 1qys_A TOP7; alpha-beta, novel 29.9 1.1E+02 0.0036 19.3 5.4 55 145-201 33-91 (106)
92 3m2p_A UDP-N-acetylglucosamine 27.7 1.3E+02 0.0043 23.1 6.0 57 106-164 46-108 (311)
93 2og2_A Putative signal recogni 27.5 1.1E+02 0.0038 24.9 5.7 65 123-197 275-341 (359)
94 3r6d_A NAD-dependent epimerase 27.0 55 0.0019 23.8 3.5 52 106-164 56-107 (221)
95 3zdk_A 5' exonuclease apollo; 26.6 42 0.0014 27.1 2.9 26 139-164 274-299 (336)
96 2q7x_A UPF0052 protein SP_1565 24.8 52 0.0018 26.6 3.1 64 102-167 158-227 (326)
97 3qvo_A NMRA family protein; st 24.6 56 0.0019 24.2 3.2 54 106-164 71-124 (236)
98 2jvf_A De novo protein M7; tet 24.1 1.3E+02 0.0045 18.5 4.7 56 145-201 35-93 (96)
99 2zcu_A Uncharacterized oxidore 23.9 97 0.0033 23.3 4.5 56 106-164 48-103 (286)
100 3dcm_X AdoMet, uncharacterized 21.9 1.1E+02 0.0038 22.7 4.2 44 104-153 137-180 (192)
101 2p0y_A Hypothetical protein LP 21.6 48 0.0016 27.0 2.3 64 102-167 163-231 (341)
102 3rft_A Uronate dehydrogenase; 20.5 89 0.003 23.6 3.7 58 105-163 46-109 (267)
103 3dhn_A NAD-dependent epimerase 20.1 56 0.0019 23.8 2.3 58 106-164 50-111 (227)
No 1
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=100.00 E-value=6.4e-35 Score=239.47 Aligned_cols=186 Identities=30% Similarity=0.491 Sum_probs=155.1
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCC---
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQD--- 81 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 81 (202)
-+|||.|.||++||+.|+.+...++.+++||+++++.+.+++.+++.+.... .....+.++++.+++ +++++++
T Consensus 103 IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~~g~~~~ 180 (293)
T 3md7_A 103 AVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPV--GSSYPPILSMHDIAPETPFSIEGAGG 180 (293)
T ss_dssp EECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCT--TCCCCCCEEEEECCTTCCEEECCTTC
T ss_pred EEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhhhhcccc--ccCCCCceEEEEcCCCCcEEECCCCC
Confidence 4789999999999999987544456789999999999999887766543210 001123467788864 7899999
Q ss_pred -EEEEEEEecCCCCceeeeEEEccEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 028873 82 -LKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRT 160 (202)
Q Consensus 82 -~~I~~~~v~H~~~~~~~gy~i~~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~l 160 (202)
++|++++++|+. .+++||+|++++|+|||++++++++++++++|+||+||++.. .+++|+++++++++++++++|++
T Consensus 181 ~~~v~~~~~~H~~-~~~~g~~i~~~~y~gDt~~~~~~~~~~~~~~Dlli~e~~~~~-~~~~H~~~~~a~~~~~~~~~k~l 258 (293)
T 3md7_A 181 AIRFEPFSQVHGD-IESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYR-PHPSHFSLGEALEWIEKLSPKRA 258 (293)
T ss_dssp CEEEEEEEEEETT-EEEEEEEETTEEEECSCSBCCGGGHHHHTTCSEEEEECCCSS-CBTTBCCHHHHHHHHHHHCCSEE
T ss_pred cEEEEEEEecCCC-CCEEEEEEeEEEEECCCCCCCHHHHHHhcCCCEEEEeCccCC-CCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999984 389999999999999999887789999999999999998764 67899999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEeecC
Q 028873 161 LFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 202 (202)
Q Consensus 161 vltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l~~ 202 (202)
++||++++++++++.+++. .++.+|+|||+|+|+.
T Consensus 259 vl~H~~~~~~~~~~~~~~~-------~~v~~a~DG~~i~l~~ 293 (293)
T 3md7_A 259 ILTHMHVPLDYETVMRETP-------HHVEPGYDGLRFEVAV 293 (293)
T ss_dssp EEESBCTTCCHHHHHHHSC-------TTEEECCTTCEEEECC
T ss_pred EEECCCCCCCHHHHHhhcC-------CCcEEeeCCcEEEecC
Confidence 9999999998776654433 3899999999999863
No 2
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.98 E-value=4.6e-32 Score=225.28 Aligned_cols=178 Identities=18% Similarity=0.263 Sum_probs=141.7
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEe---CC
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTV---QD 81 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~ 81 (202)
-+|||.|.||++||+.|+. ..+++||+++.+.+.+++.++ .+... .+. .+.++++++++ +++++ ++
T Consensus 86 i~lTH~H~DH~~gl~~l~~-----~~~~~vy~~~~~~~~l~~~~~-~f~~~--~~~--~~~i~~~~i~~g~~~~i~~~~~ 155 (321)
T 3jxp_A 86 IVLLDSQIDHTTGLLSLRE-----GCPHQVWCTDMVHQDLTTGFP-LFNML--SHW--NGGLQWNRIELEGSFVIDACPN 155 (321)
T ss_dssp EECSCCCHHHHGGGGGGGG-----GCCEEEEECHHHHHHTTTTSC-HHHHH--TTT--TTCEEEEECCSSSCEECTTSTT
T ss_pred EEECCCChhhhhhHHHHHh-----cCCCeEEECHHHHHHHHhhCc-ccccc--ccc--cCceeEEEcCCCCeEEeccCCC
Confidence 4789999999999999853 358999999999988876553 22210 011 12367788864 78999 99
Q ss_pred EEEEEEEec--------CCCC---ceeeeEEEc------cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCC-------
Q 028873 82 LKITPLPVW--------HGAG---YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR------- 137 (202)
Q Consensus 82 ~~I~~~~v~--------H~~~---~~~~gy~i~------~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~------- 137 (202)
++|++++++ |+.. .+++||+|+ +++|+|||++++++++++++++|+||+||++...
T Consensus 156 ~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~~~~~~~~~~D~li~eat~~~d~e~~~~g 235 (321)
T 3jxp_A 156 LKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEMQRRG 235 (321)
T ss_dssp EEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCHHHHHHHHHCSEEEEECCCSSTTHHHHHT
T ss_pred eEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCCHHHHHHhcCCCEEEEeCCCCCcHHHhhcc
Confidence 999999998 6531 389999998 7999999999888899999999999999987641
Q ss_pred ------CCCCCCCHH---HHHHHHHHcCCCEEEEecCCCCCC-----hHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 138 ------SSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMD-----HEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 138 ------~~~~H~~~~---ea~~~~~~~~~k~lvltHl~~~~~-----~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
..++|++++ +|+++++++++|+++|||++++++ .++.++.++. ++++|||||+|++
T Consensus 236 lk~r~~~~~gH~s~~~~~eA~~~a~~~~~k~lvLtH~s~~np~l~~~~~e~~~~~~~-------~v~~A~DGm~i~~ 305 (321)
T 3jxp_A 236 VGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRR-------GVEVAFDGMSIEL 305 (321)
T ss_dssp SCSCCCC-CCCCCSSSTTCHHHHHTTCSSSEEEEESBCTTCGGGSTTCHHHHHHHHT-------TEEECCTTCEEEE
T ss_pred ccccccCCCcccCCCCHHHHHHHHHhCCCCeEEEEEeCCCCcccccchHHHHHhhcC-------CcEEecCCcEEEe
Confidence 357999999 999999999999999999999973 2234433332 8999999999986
No 3
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.97 E-value=1.3e-31 Score=220.23 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=144.2
Q ss_pred ccchhhhhccccCChhhhhhhh--ccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQD 81 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~--~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (202)
.-+|||.|.||++|++.++... ..+..+++||+|+++.+.++..+.+... +.. ..++++++++ +.+++++
T Consensus 60 ~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~----~~~---~~~~~~~~~~g~~~~~~~ 132 (306)
T 2cbn_A 60 KIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGS----WTD---YPLEIVEIGAGEILDDGL 132 (306)
T ss_dssp EEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTC----CCS---SCEEEEECCSEEEEECSS
T ss_pred EEEEecCCchhhCChHHHHHHHHhcCCCCCeEEEcCccHHHHHHHHHHhhcc----CCC---ceEEEEEcCCCcEeecCC
Confidence 3479999999999999987532 2345689999999998877764321110 011 1255677764 6788999
Q ss_pred EEEEEEEecCCCCceeeeEEEc------------------------------------------------------cEEE
Q 028873 82 LKITPLPVWHGAGYRSLGFRFG------------------------------------------------------NICY 107 (202)
Q Consensus 82 ~~I~~~~v~H~~~~~~~gy~i~------------------------------------------------------~~~y 107 (202)
++|+++++.|+. +++||+++ +++|
T Consensus 133 ~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~~ 210 (306)
T 2cbn_A 133 RKVTAYPLEHPL--ECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAI 210 (306)
T ss_dssp EEEEEEECBSSS--CCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEE
T ss_pred EEEEEEEccCCC--CccEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCCCEEEE
Confidence 999999999987 89999984 5999
Q ss_pred eCCCCCCCcchhhhccCCCEEEEeccCCCC-----CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHH---HHHHHh
Q 028873 108 ISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEK---VNEELL 179 (202)
Q Consensus 108 ~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~---~~~~~~ 179 (202)
+|||++.+ ++.++++++|+||+||+|.++ ..++|+++++|+++++++++|++++||++++++..+ +.++++
T Consensus 211 sgDt~~~~-~~~~~~~~~D~li~E~t~~~~~~~~a~~~~H~t~~~a~~~a~~~~~~~lvl~H~s~~~~~~~~~~~~~e~~ 289 (306)
T 2cbn_A 211 FGDTGPCD-AALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECR 289 (306)
T ss_dssp CCSCBSCS-THHHHHTTCSEEEEECCBCGGGHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHH
T ss_pred eCCCCCHH-HHHHHhcCCCEEEEECcCChhhHhHHhhcCCCCHHHHHHHHHHcCCcEEEEEeecCCCCCCchhHHHHHHH
Confidence 99999887 688999999999999999864 358999999999999999999999999999986433 444444
Q ss_pred hccccCCCcEEEeecCeEEee
Q 028873 180 KLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 180 ~~~~~~~~~v~~A~DG~~i~l 200 (202)
+ .+. ++.+|+|||+++|
T Consensus 290 ~---~~~-~~~~a~Dg~~~~~ 306 (306)
T 2cbn_A 290 S---IFP-ATELANDFTVFNV 306 (306)
T ss_dssp T---TCS-CEEECCTTCEEEC
T ss_pred H---hCC-CcEEcccccEeeC
Confidence 3 233 7999999999975
No 4
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=226.76 Aligned_cols=184 Identities=16% Similarity=0.152 Sum_probs=131.7
Q ss_pred cchhhhhccccCChhhhhhhh--cc----CCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC------
Q 028873 6 STIALFVGFLPMGLDDLRDWT--NN----VQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID------ 73 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~--~~----~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 73 (202)
-+|||+|.||++||+.|+... .+ +..+++||||+++.+.++..+.+... . .. ..+.++++.
T Consensus 56 I~iTH~H~DHi~gl~~l~~~~~~~~~~~~~~~~l~iygp~~~~~~l~~~l~~~~~-~---~~---~~~~~~el~~~~~~~ 128 (368)
T 3zwf_A 56 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHT-E---LV---FHYVVHELVPTADQC 128 (368)
T ss_dssp EECCCSSGGGTTTHHHHHHHHHHHC------CCEEEEEETTHHHHHHHHHHHTTC-C---CS---SCEEEEEECCCGGGS
T ss_pred EEECCCChHHhCcHHHHHHHhhhccccccCCCCeEEEEcHHHHHHHHHHHHhhCc-C---CC---ceEEEEEeecCcccc
Confidence 379999999999999998542 11 23589999999998887763221100 0 00 012233331
Q ss_pred ----------------------C------------CceEeCCEEEEEEEecCCCCceeeeEEEc----------------
Q 028873 74 ----------------------E------------EPFTVQDLKITPLPVWHGAGYRSLGFRFG---------------- 103 (202)
Q Consensus 74 ----------------------~------------~~~~~~~~~I~~~~v~H~~~~~~~gy~i~---------------- 103 (202)
+ ..++.++++|+++|+.|+. +|+||+|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~V~a~~~~H~v--p~~gy~i~e~~~~g~~~~ek~~~~ 206 (368)
T 3zwf_A 129 PAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKAFRLFHRI--PSFGFSVVEKKRPGKLNAQKLKDL 206 (368)
T ss_dssp CC-------------------CCCEECCBTTTTBEEEEECSSEEEEEEEEESSS--CEEEEEEEECC-------------
T ss_pred ccccccccccccccccCcccccccccccccccCceeEEeCCCEEEEEEeccCCC--ceEEEEEEecCCcCccCHHHHHHc
Confidence 1 1234489999999999998 99999994
Q ss_pred --------------------------------------cEEEeCCCCC--CCcchhhhccCCCEEEEeccCCCC-----C
Q 028873 104 --------------------------------------NICYISDVSE--IPEETYPFLQDCEILIMDALRPDR-----S 138 (202)
Q Consensus 104 --------------------------------------~~~y~~Dt~~--~~~~~~~~~~~~DlLi~e~~~~~~-----~ 138 (202)
+++|+|||++ ++ ++.++++++|+||+||+|.+. .
T Consensus 207 gip~G~~~~~Lk~G~~v~~~dG~~i~~~~v~~~~~~g~~v~~~GDT~~~~~~-~~~~~~~~~Dlli~Eat~~~~~~~~a~ 285 (368)
T 3zwf_A 207 GVPPGPAYGKLKNGISVVLENGVTISPQDVLKKPIVGRKICILGDCSGVVGD-GGVKLCFEADLLIHEATLDDAQMDKAK 285 (368)
T ss_dssp -----------------------------------CCCEEEEECSCSEECSS-HHHHHTTTCSEEEEECCSCGGGHHHHH
T ss_pred CCCchHHHHhcCCCCeEEecCCEEEEhHHhccccccceEEEEEecCCcccch-hHHHHhcCCCEEEEecCCChHHHhhhh
Confidence 3899999997 54 688999999999999999864 2
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCCh------------HHHHHHHhhccccCCC-cEEEeecCeEEeecC
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH------------EKVNEELLKLMETEGL-DVQLSYDGLRVPVML 202 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~------------~~~~~~~~~~~~~~~~-~v~~A~DG~~i~l~~ 202 (202)
.++||++++|+++|+++++|++++||++++++. +++.+++++ .+.+ ++.+|+|||+++|.+
T Consensus 286 ~~~H~t~~~A~~~a~~~~~k~lil~H~s~ry~~~~~~~~~~~~~~~~~~~ea~~---~f~~~~~~~a~dg~~~~i~~ 359 (368)
T 3zwf_A 286 EHGHSTPQMAATFAKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAES---VLDLQEVTLAEDFMVISIPI 359 (368)
T ss_dssp HTTCCCHHHHHHHHHHTTCSEEEEECBCCCC------------------------------CEEEECCTTCEEECCC
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEEeeCcccCccccccccccchHHHHHHHHHH---hcCCCceEEecCCcEEEeec
Confidence 378999999999999999999999999999852 234444443 2332 799999999999853
No 5
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.97 E-value=1.6e-30 Score=215.18 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=144.2
Q ss_pred cchhhhhccccCChhhhhhhh--ccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCE
Q 028873 6 STIALFVGFLPMGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDL 82 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~--~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (202)
-+|||.|.||++|++.|+... ..+..+++||+|+++.+.++....+... +.. ..++++++++ +.++++++
T Consensus 59 I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~----~~~---~~~~~~~~~~g~~~~~~~~ 131 (320)
T 1y44_A 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT----HLT---YPLAIQEIEEGIVFEDDQF 131 (320)
T ss_dssp EECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTC----CCS---SCEEEEECCSEEEEECSSE
T ss_pred EEEeCCChhhhCCHHHHHHHHHhcCCCCCEEEEeCHHHHHHHHHHHHhhcc----CCC---CceEEEEcCCCceEecCCE
Confidence 479999999999999987532 2345689999999998877664321110 011 1245667754 67889999
Q ss_pred EEEEEEecCCCCceeeeEEEc------------------------------------------------------cEEEe
Q 028873 83 KITPLPVWHGAGYRSLGFRFG------------------------------------------------------NICYI 108 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~gy~i~------------------------------------------------------~~~y~ 108 (202)
+|+++|+.|+. +++||+++ +++|+
T Consensus 132 ~v~~~p~~H~~--~~~gy~i~~~~~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g~~i~~s 209 (320)
T 1y44_A 132 IVTAVSVIHGV--EAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFS 209 (320)
T ss_dssp EEEEEECBSSS--SBEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEEC
T ss_pred EEEEEEccCCC--CcceEEEecCCCcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCCCEEEEe
Confidence 99999999988 89999984 59999
Q ss_pred CCCCCCCcchhhhccCCCEEEEeccCCCC-----CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCCh---HHHHHHHhh
Q 028873 109 SDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH---EKVNEELLK 180 (202)
Q Consensus 109 ~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~---~~~~~~~~~ 180 (202)
|||++.+ ++.++++++|+||+||+|.++ ..++|+++++|+++++++++|++++||++++++. +++.+++++
T Consensus 210 gDt~~~~-~~~~~~~~~D~li~E~t~~~~~~~~a~~~~H~t~~~a~~~a~~~~~~~lil~H~s~~~~~~~~~~~~~e~~~ 288 (320)
T 1y44_A 210 GDTRVSD-KLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD 288 (320)
T ss_dssp CSCBCCH-HHHHHTTTCSEEEEECCBCTTCHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHH
T ss_pred CCCCCHH-HHHHHhCCCCEEEEeccCCcchHhHHhhcCCCCHHHHHHHHHHcCCCEEEEEeEcCCCCCcchHHHHHHHHH
Confidence 9999886 688999999999999999864 2489999999999999999999999999998854 335555554
Q ss_pred ccccCCCcEEEeecCeEEeec
Q 028873 181 LMETEGLDVQLSYDGLRVPVM 201 (202)
Q Consensus 181 ~~~~~~~~v~~A~DG~~i~l~ 201 (202)
. .. ++.+|+|||++++.
T Consensus 289 ~---~~-~~~~a~dg~~~~l~ 305 (320)
T 1y44_A 289 V---FP-NSVAAYDFLEVNVP 305 (320)
T ss_dssp H---CS-SEEECCTTCEEECC
T ss_pred h---CC-CcEeccCCCEEEec
Confidence 2 33 79999999999874
No 6
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.97 E-value=5.5e-31 Score=212.21 Aligned_cols=170 Identities=25% Similarity=0.428 Sum_probs=133.9
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEE-EeeC-CCceEeCCEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NIID-EEPFTVQDLK 83 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 83 (202)
-+|||.|.||++|++.++ ..++.+++||+|+++.. +.+.+.+ ++ ..++ +.++ ++.+++++++
T Consensus 72 IliTH~H~DHi~gl~~l~---~~~~~~~~v~~~~~~~~-~~~~~~~--------~~----~~~~~~~~~~g~~~~~g~~~ 135 (258)
T 3g1p_A 72 FLLTHYHMDHVQGLFPLR---WGVGDPIPVYGPPDEQG-CDDLFKH--------PG----LLDFSHTVEPFVVFDLQGLQ 135 (258)
T ss_dssp EECSCCCHHHHGGGTTTT---TCSSSCEEEEECCCSSC-STTTTTS--------CT----TEEEEEECCTTCCEEETTEE
T ss_pred EEEccCchhHhCCHHHHh---ccCCCCeEEEeChhhhh-HHHHhcC--------CC----ccccccccCCCCeEEECCEE
Confidence 479999999999998874 23456799999998751 1111110 11 1222 3454 4789999999
Q ss_pred EEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhhc--cCCCEEEEeccCCCC--CCCCCCCHHHHHHHHHHc
Q 028873 84 ITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPRALEEVRKI 155 (202)
Q Consensus 84 I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~--~~~DlLi~e~~~~~~--~~~~H~~~~ea~~~~~~~ 155 (202)
|++++++|+. +++||+|+ +++|+|||+++++++++.+ +++|+||+||++.++ ..++|+++++++++++++
T Consensus 136 v~~~~~~H~~--~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~l~~~~~Dlli~e~t~~~~~~~~~~H~~~~~a~~~~~~~ 213 (258)
T 3g1p_A 136 VTPLPLNHSK--LTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLALNQVI 213 (258)
T ss_dssp EEEEECCSSS--CCEEEEEECSSCEEEEECSCSSCCHHHHHHHHHTCCSEEEEECCBSSCSSCCSSSCBHHHHHHHHHHH
T ss_pred EEEEECCCCC--CceEEEEEeCCcEEEEECCCCCCCHHHHHHHHhCCCCEEEEeCCCCCccccCCCCCCHHHHHHHHHHc
Confidence 9999999987 89999998 7999999999987677777 799999999999764 358999999999999999
Q ss_pred CCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 156 QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 156 ~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
++|++++||++++++++.++ + ....++++|+|||+|++
T Consensus 214 ~~k~lil~H~s~~~~~~~~~----~---~~~~~v~~a~Dg~~~~~ 251 (258)
T 3g1p_A 214 RSPRVILTHISHQFDAWLME----N---ALPSGFEVGFDGMEIGV 251 (258)
T ss_dssp CCSCEEEESCCHHHHHHHTT----C---CCCTTEEECCTTEEEC-
T ss_pred CCCEEEEECccCccchhhhh----h---hCCCCeEEccCCCEEee
Confidence 99999999999988654332 1 23448999999999986
No 7
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.96 E-value=3.2e-28 Score=196.70 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=143.0
Q ss_pred cchhhhhccccCChhhhhhhhc------cCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceE
Q 028873 6 STIALFVGFLPMGLDDLRDWTN------NVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFT 78 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~------~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (202)
-+|||.|.||++|++.+..... .+..+++||+|+++.+.+++.. + +. ..+.+.+++ +.++
T Consensus 79 v~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~------~~----~~~~~~~~~g~~~~ 145 (268)
T 1zkp_A 79 VVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLT---H------EP----HTKGIPYNPEETLQ 145 (268)
T ss_dssp EECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHHHTTC---B------TT----TEEEEECCTTSCEE
T ss_pred EEEecCCchhhCCHHHHHHHHHhcccccCCCCceEEEeCccHHHHHHhcc---c------CC----ccceEEecCCCeEE
Confidence 4799999999999998875311 1456799999999988777632 1 11 123555653 7899
Q ss_pred eCCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCC---CCCCCCCHHHHHHH
Q 028873 79 VQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR---SSSTHFGLPRALEE 151 (202)
Q Consensus 79 ~~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~---~~~~H~~~~ea~~~ 151 (202)
+++++|++++++|+. +++||+++ +++|+||+.+.+ ++.++++++|+||+||++.+. ..++|+++++++++
T Consensus 146 ~g~~~v~~~~~~H~~--~~~~~~i~~~~~~i~~~GD~~~~~-~~~~~~~~~d~li~e~~~~~~~~~~~~~H~~~~~a~~~ 222 (268)
T 1zkp_A 146 IGPFSISFLKTVHPV--TCFAMRITAGNDIVVYSADSSYIP-EFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASI 222 (268)
T ss_dssp ETTEEEEEEECCSSS--CCEEEEEEETTEEEEECCSCCCCT-THHHHHTTCSEEEEECCBCTTSCCGGGTCCBHHHHHHH
T ss_pred ECCEEEEEEECCCCC--CceEEEEEECCeEEEEeCCCCCCH-HHHHHHcCCCEEEEECCCCccccccCCCCCCHHHHHHH
Confidence 999999999999987 89999996 799999999876 688889999999999998753 24679999999999
Q ss_pred HHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEe
Q 028873 152 VRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVP 199 (202)
Q Consensus 152 ~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~ 199 (202)
++++++|+++++|++++++.+++.+++++ ..+.++.+|+|||+++
T Consensus 223 ~~~~~~~~lil~H~~~~~~~~~~~~~~~~---~~~~~v~~a~dg~~~~ 267 (268)
T 1zkp_A 223 AKDANVKELLLTHLPHTGNPADLVTEAKQ---IFSGHITLAHSGYVWN 267 (268)
T ss_dssp HHHTTCSEEEEESBCSSSCTHHHHHHHHT---TCCSEEEECCTTCEEE
T ss_pred HHHcCCCEEEEECCCCCCChHHHHHHHHH---hCCCCEEEEeCCcccc
Confidence 99999999999999999887777766665 2444799999999985
No 8
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.96 E-value=3.7e-29 Score=202.70 Aligned_cols=183 Identities=10% Similarity=0.113 Sum_probs=135.0
Q ss_pred cchhhhhccccCChhhhhhh----hccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeC
Q 028873 6 STIALFVGFLPMGLDDLRDW----TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQ 80 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~----~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (202)
-+|||.|.||++|++.|... ...+.++++||+|+++. .+++...+..... +. ....++++.+++ +.++++
T Consensus 44 IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~---~~-~~~~~~~~~~~~g~~~~~g 118 (280)
T 2e7y_A 44 VFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR-AVEEYTEFIKRAN---PD-LRFSFNVHPLKEGERVFLR 118 (280)
T ss_dssp EECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-HHHHHHHHHHHHC---GG-GTTTEEEEEECTTCCEECC
T ss_pred EEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-HHHHHHHHHhhcc---cC-CCCceEEEEcCCCCEEEeC
Confidence 47999999999999998532 11235679999999887 6665322110000 00 001245667754 789998
Q ss_pred -----CEEEEEEEecCCCCce--eeeEEEc-------------------------------------cEEEeCCCCCCCc
Q 028873 81 -----DLKITPLPVWHGAGYR--SLGFRFG-------------------------------------NICYISDVSEIPE 116 (202)
Q Consensus 81 -----~~~I~~~~v~H~~~~~--~~gy~i~-------------------------------------~~~y~~Dt~~~~~ 116 (202)
+++|+++++.|+. + |+||+|+ +++|+|||++.
T Consensus 119 ~~~~~~~~v~~~~~~H~~--~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~~~~~~~g~~i~ysgDt~~~-- 194 (280)
T 2e7y_A 119 NAGGFKRYVQPFRTKHVS--SEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLAL-- 194 (280)
T ss_dssp CSSCSCEEEEEEECCSCS--SSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEEEEECCSCSSC--
T ss_pred CcccCCEEEEEEEccCCC--CCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCceecCCccCCEEEEECCCChH--
Confidence 8999999999987 6 9999994 59999999976
Q ss_pred chhhhccCCCEEEEeccCCCCC---CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCCh--HHHHHHHhhccccCCCcEEE
Q 028873 117 ETYPFLQDCEILIMDALRPDRS---SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH--EKVNEELLKLMETEGLDVQL 191 (202)
Q Consensus 117 ~~~~~~~~~DlLi~e~~~~~~~---~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~--~~~~~~~~~~~~~~~~~v~~ 191 (202)
..++++++|+||+||++.+.. .++|+++++++++++++++|++++||++++++. +++.+++++. ..+.++.+
T Consensus 195 -~~~~~~~~d~li~e~t~~~~~~~~~~~H~t~~~a~~~~~~~~~~~lvl~H~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 271 (280)
T 2e7y_A 195 -DPEEIRGTELLIHECTFLDARDRRYKNHAAIDEVMESVKAAGVKKVILYHISTRYIRQLKSVIKKYREE--MPDVEILY 271 (280)
T ss_dssp -CHHHHTTCSCEEEECCBC--------CCCBHHHHHHHHHHHTCCEEEEESCCGGGHHHHHHHHHHHHHH--CTTSEEEE
T ss_pred -HHHhhcCCCEEEEeCCcCChhhHHhcCCCCHHHHHHHHHHcCCCEEEEEeecCcCcchHHHHHHHHHHh--CCCceEEE
Confidence 467789999999999997631 478999999999999999999999999998842 3344444432 22348999
Q ss_pred eecCeEEee
Q 028873 192 SYDGLRVPV 200 (202)
Q Consensus 192 A~DG~~i~l 200 (202)
|+||++++|
T Consensus 272 a~~G~~~~~ 280 (280)
T 2e7y_A 272 MDPRKVFEM 280 (280)
T ss_dssp CCTTSCEEC
T ss_pred eCCCceeeC
Confidence 999999875
No 9
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.84 E-value=4.8e-20 Score=156.13 Aligned_cols=180 Identities=8% Similarity=-0.017 Sum_probs=131.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-+|||.|.||+ |++.+..+.....++++||+|.++.+.+++. + + + ..+++.++ ++.+++++++
T Consensus 136 ~IliTH~H~DHi-g~~~l~~l~~~~~~~~~v~~~~~~~~~l~~~-g--~------~-----~~~~~~l~~g~~~~~g~~~ 200 (379)
T 3bv6_A 136 AVLASHDHADHI-DVNVAAAVLQNCGEHVKFIGPQACVDLWLGW-G--V------P-----QERCIVAKVGDVLEIGDVK 200 (379)
T ss_dssp EEECSBCSGGGC-CHHHHHHHHHHSCTTCEEEECHHHHHHHHHH-T--C------C-----GGGEEECCTTCEEEETTEE
T ss_pred EEEECCCCcccC-ChHHHHHHHhcCCCCcEEEecHHHHHHHHHc-C--C------C-----hhhEEEeCCCCEEEECCEE
Confidence 347999999999 7777665543322379999999998877652 1 0 0 12356665 3788999999
Q ss_pred EEEEEecCCC-------------C-------ceeeeEEEc----cEEEeCCCCCCCcchhhhcc--CCCEEEEeccCCCC
Q 028873 84 ITPLPVWHGA-------------G-------YRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR 137 (202)
Q Consensus 84 I~~~~v~H~~-------------~-------~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~--~~DlLi~e~~~~~~ 137 (202)
|+++++.|+. + ..++||+|+ +++|+|||.+.+ ++.+..+ ++|++++.+.....
T Consensus 201 v~~~~~~H~~~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~-~~~~i~~~~~~Dv~il~~g~~~~ 279 (379)
T 3bv6_A 201 IRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSN-YYAKHGNDYQIDVALLSYGENPR 279 (379)
T ss_dssp EEEEECCCHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCT-THHHHHHHSCCSEEEEEBCCCCT
T ss_pred EEEEecccccccccccccccccccccccccCCceEEEEEEeCCeEEEEeCCCCccH-HHHHHhhcCCCCEEEecCCCCcc
Confidence 9999999841 0 148999996 899999999886 4554443 78999997654222
Q ss_pred CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCC----ChHHHHHHHhhcccc--CCCcEEEeecCeEEee
Q 028873 138 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM----DHEKVNEELLKLMET--EGLDVQLSYDGLRVPV 200 (202)
Q Consensus 138 ~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~----~~~~~~~~~~~~~~~--~~~~v~~A~DG~~i~l 200 (202)
...+||+.++|+++++++++|+++++|+++.. +.+++.+.+++..++ .+.++.++.+|+++++
T Consensus 280 ~~~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~G~~~~l 348 (379)
T 3bv6_A 280 GVTDKMTSSDVLRAAESLDCQVVVPFHHDIWANFQNDPREIEVLWNMKKDRLQYQFAPFFWQVGGKYTY 348 (379)
T ss_dssp TCCCSBCHHHHHHHHHHHTCSEEEEESTTSBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEE
T ss_pred cccccCCHHHHHHHHHHcCCCEEEEEeecccccccCCHHHHHHHHHhhhhhhcCCCceEEccCCcEEEe
Confidence 34679999999999999999999999998753 456666666532111 1236778899999887
No 10
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.84 E-value=9.5e-20 Score=153.25 Aligned_cols=180 Identities=9% Similarity=0.015 Sum_probs=130.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (202)
.-+|||.|.||+ |++.+..+.....++++||+|+++.+.+++. + + + ..+++.++. +.+++++++
T Consensus 112 ~VliTH~H~DHi-g~~~l~~l~~~~~~~~~v~~p~~~~~~l~~~-g--~------~-----~~~~~~l~~g~~~~~g~~~ 176 (360)
T 2wyl_A 112 AVLATHDHNDHI-DVNVAAAVMQNCADDVPFIGPKTCVDLWIGW-G--V------P-----KERCIVVKPGDVVKVKDIE 176 (360)
T ss_dssp EEECSBSCTTTC-CHHHHHHHHHHSCTTCCEEECHHHHHHHHHH-T--C------C-----GGGEEECCTTCEEEETTEE
T ss_pred EEEECCCchhcC-CHHHHHHHHhcCCCCCEEEEcHHHHHHHHHc-C--C------C-----hheEEEcCCCCEEEECCEE
Confidence 347999999999 7666655543222379999999998877652 1 0 0 123566653 788999999
Q ss_pred EEEEEecCCC-------------------CceeeeEEEc----cEEEeCCCCCCCcchhhhcc--CCCEEEEeccCCCCC
Q 028873 84 ITPLPVWHGA-------------------GYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDRS 138 (202)
Q Consensus 84 I~~~~v~H~~-------------------~~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~--~~DlLi~e~~~~~~~ 138 (202)
|+++++.|+. ...++||+|+ +++|+|||.+.+ ++.++.+ ++|++++.+......
T Consensus 177 v~~~~~~H~~~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~-~~~~i~~~~~~Dv~il~~g~~~~~ 255 (360)
T 2wyl_A 177 IHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSN-YYAKHGNEHQIDVALGSYGENPRG 255 (360)
T ss_dssp EEEEECCCC------------------CCTTTBEEEEEEETTEEEEECTTCCCCT-THHHHHHHSCCCEEEEEBCCCCTT
T ss_pred EEEEeccCcccccccccccccccccccccCcccEEEEEEECCcEEEEeCCCCcCH-HHHHHhhCCCCCEEEecCCCCccc
Confidence 9999999852 1258999996 899999999876 4554443 789999977542223
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCC----ChHHHHHHHhhcccc--CCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLM----DHEKVNEELLKLMET--EGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~----~~~~~~~~~~~~~~~--~~~~v~~A~DG~~i~l 200 (202)
..+||+.++|+++++++++|+++++|+++.. +.+++.+.+++..++ .+.++.++.+|.++++
T Consensus 256 ~~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l 323 (360)
T 2wyl_A 256 ITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTW 323 (360)
T ss_dssp CCCSBCHHHHHHHHHHHTCSEEEEESTTTBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEE
T ss_pred ccCCCCHHHHHHHHHHhCCCEEEEEeeccccccCCCHHHHHHHHHhhhhhhcCCcceEEccCCcEEEe
Confidence 3679999999999999999999999998853 466776666532111 1236778888888876
No 11
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.83 E-value=7.2e-20 Score=147.69 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=130.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeC-HHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVA-MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (202)
+-.|||.|.||+.|+..+.. ....+||++ .++.+.+++. .. + +.+.+ ++++++++++
T Consensus 67 ~iliTH~H~DH~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~-g~--------~-------~~~~~-~~~~~~~~~~ 124 (264)
T 3rpc_A 67 AVVVTHTHLDHWDDTAINSI-----PKSLPIFVQNTADKELITSQ-GF--------I-------DVRII-FESLEFNGIT 124 (264)
T ss_dssp EEECSCCCGGGSCHHHHHHS-----CTTSCEEESSHHHHHHHHHT-TC--------S-------CEEEC-SSEEEETTEE
T ss_pred EEEECCCchhhCCCHHHHhh-----ccCCeEEEeCHHHHHHHHhc-CC--------C-------eeEEe-cccEEECCEE
Confidence 45789999999999976642 346889998 8888777652 10 0 12334 3688999999
Q ss_pred EEEEEecCCCC------------ceeeeEEEc-----cEEEeCCCCCCCcchhhhcc--CCCEEEEeccCCCC-C--CCC
Q 028873 84 ITPLPVWHGAG------------YRSLGFRFG-----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR-S--SST 141 (202)
Q Consensus 84 I~~~~v~H~~~------------~~~~gy~i~-----~~~y~~Dt~~~~~~~~~~~~--~~DlLi~e~~~~~~-~--~~~ 141 (202)
|+++|+.|+.. ..+.||+|+ ++.|+|||++++ ++.+..+ ++|++++++..... . ...
T Consensus 125 i~~~pa~H~~~~~~~~p~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~-~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~ 203 (264)
T 3rpc_A 125 LRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTS-DVEKALLRFDPNVIIMNTGYAQILGFEDSI 203 (264)
T ss_dssp EEEECCCSSCHHHHTSTTHHHHHCCCCEEEEECTTSCCEEECCSCCSCH-HHHHHHHHHCCSEEEEECSCBCBTTCSSCS
T ss_pred EEEeccccCCccccccccccccccccEEEEEEeCCccEEEEECCcCchH-HHHHHHHHhCCCEEEEecCccccccccCCc
Confidence 99999999862 147999996 799999999986 4655543 69999999985432 1 478
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCCCCC----ChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 142 HFGLPRALEEVRKIQPKRTLFIGMMHLM----DHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 142 H~~~~ea~~~~~~~~~k~lvltHl~~~~----~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
||+++||+++++.+++|+++++|++... +.+++.+.+++.. .+.++.+..+|.+++|
T Consensus 204 hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~~~~~~~g--~~~~~~~~~~Ge~~~l 264 (264)
T 3rpc_A 204 IMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKGNN--IESHVAVPEDGETITL 264 (264)
T ss_dssp SCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHHHHHHHTT--CTTTEECCCTTCEEEC
T ss_pred ccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHHHHHHHcC--CCCcEEecCCCCEEeC
Confidence 9999999999999999999999998632 4667777666421 2237999999999875
No 12
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.83 E-value=6.1e-20 Score=145.94 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=115.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CC-ceEeCCE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE-PFTVQDL 82 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 82 (202)
+-+|||.|.||+ |++.++... ...++||+++++.+.+++ .+.++ ++ +++++++
T Consensus 68 ~VliTH~H~DH~-~~~~l~~~~---~~~~~v~~~~~~~~~l~~---------------------~~~l~~g~~~~~~g~~ 122 (235)
T 3kl7_A 68 IILITHEHGDHL-DPKAIQAVE---KSDTEIIANENSQKKLGK---------------------GKVLKNGDTDTSISYM 122 (235)
T ss_dssp EEEECCSSTTTC-CHHHHHHHC---CTTCEEEECHHHHHHHTC---------------------SEECCTTCEECCSTTC
T ss_pred EEEECCCccccC-CHHHHHHhh---cCCCEEEEcHHHHHHhcC---------------------cEEecCCCEEEEECCE
Confidence 457999999999 888876542 357999999999876642 12232 35 7888999
Q ss_pred EEEEEEecCCCC--------ceeeeEEEc----cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHH
Q 028873 83 KITPLPVWHGAG--------YRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALE 150 (202)
Q Consensus 83 ~I~~~~v~H~~~--------~~~~gy~i~----~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~ 150 (202)
+|+++|+.|+.. ..+.||+|+ +++|+|||++++ ++ +.++++|++++++. ...||++++|++
T Consensus 123 ~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g~~i~~~GDt~~~~-~~-~~l~~~Dv~il~~~-----~~~h~~~~ea~~ 195 (235)
T 3kl7_A 123 KIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTEDIP-EM-KDLKDIDIAFLPVN-----QPYTMTVSQAAK 195 (235)
T ss_dssp EEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCCSCG-GG-GGCCSCSEEEEECC-----TTTSCCHHHHHH
T ss_pred EEEEEEeecCCCccccccCCCCceEEEEEeCCeEEEEECCCCchh-hH-HhhcCCCEEEECCC-----CCcccCHHHHHH
Confidence 999999999751 136899997 899999999886 44 34689999999996 357999999999
Q ss_pred HHHHcCCCEEEEecCCCCCChHHHHHHHhh
Q 028873 151 EVRKIQPKRTLFIGMMHLMDHEKVNEELLK 180 (202)
Q Consensus 151 ~~~~~~~k~lvltHl~~~~~~~~~~~~~~~ 180 (202)
+++++++|+++++|++. .+++++++++++
T Consensus 196 ~~~~l~~k~vip~H~~~-~~~~~~~~~l~~ 224 (235)
T 3kl7_A 196 AARMFSPKILYPYHYGD-TKIGELKDALKD 224 (235)
T ss_dssp HHHHHCCSEEEEESCTT-CCTTHHHHHTTT
T ss_pred HHHHcCCCEEEEEcCCC-CCHHHHHHHHhh
Confidence 99999999999999999 678888777764
No 13
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.78 E-value=3.6e-18 Score=146.48 Aligned_cols=162 Identities=11% Similarity=0.094 Sum_probs=113.2
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee---eecCCCCCCCcccceEEEeeCC-CceEeCC
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL---VDTSGIIPGAAVSELQFNIIDE-EPFTVQD 81 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (202)
-+|||.|.||++|++.|. ++++||+++.+.+.++....+. +... ........+++.+++ +.+++++
T Consensus 88 v~lTH~H~DHiggl~~l~-------~~~~iy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~g~ 157 (429)
T 2az4_A 88 VFLSHAHLDHSRMINYLD-------PAVPLYTLKETKMILNSLNRKGDFLIPSP---FEEKNFTREMIGLNKNDVIKVGE 157 (429)
T ss_dssp EECSCSCHHHHTTGGGBC-------TTSCEEEEHHHHHHHHHHTTTSCSSCCCT---TSCTTCCCCCEEECTTCEEEETT
T ss_pred EEECCchHHHhCcHhHhc-------CCCCEEECHHHHHHHHHHHHhCccccccc---cccccccceEEEeCCCCeEEECC
Confidence 579999999999999874 1688999999988776533210 0000 000001234566654 7899999
Q ss_pred EEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCC------cchhhhccCCCEEEEeccCCCCC-------CCCCCC
Q 028873 82 LKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIP------EETYPFLQDCEILIMDALRPDRS-------SSTHFG 144 (202)
Q Consensus 82 ~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~------~~~~~~~~~~DlLi~e~~~~~~~-------~~~H~~ 144 (202)
++|+++++.|+. ..++||+|+ +++|+||+.... +.+.+..+++|+||+||++.+.. ..+|++
T Consensus 158 ~~v~~~~~~H~~-~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~~~~~~~~~~~~~~s 236 (429)
T 2az4_A 158 ISVEIVPVDHDA-YGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVS 236 (429)
T ss_dssp EEEEEEECCCSS-TTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSCCCCCCTTBCCCCS
T ss_pred EEEEEEECCCCC-hhhEEEEEEeCCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCcccccccccCCCCCC
Confidence 999999999965 159999996 799999997432 13667778999999999986521 245998
Q ss_pred HHHHHHHHHH---cCCCEEEEecCCCCCChHHHHHHHh
Q 028873 145 LPRALEEVRK---IQPKRTLFIGMMHLMDHEKVNEELL 179 (202)
Q Consensus 145 ~~ea~~~~~~---~~~k~lvltHl~~~~~~~~~~~~~~ 179 (202)
..++.+.+.+ .+.++++++|+++.+ ..++.+.++
T Consensus 237 ~~~~~~~i~~~~~~~~~rlil~h~~~~~-~~r~~~~a~ 273 (429)
T 2az4_A 237 EEDLVQHLVRLELENPNRQITFNGYPAN-VERFAKIIE 273 (429)
T ss_dssp HHHHHHHHHHHHHTCSSSCEEEEECTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeccch-HHHHHHHHH
Confidence 8887554433 246889999999766 444444333
No 14
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=99.77 E-value=5.6e-20 Score=149.98 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=121.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCC--Ccc---cceEEEeeCCCceEe
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPG--AAV---SELQFNIIDEEPFTV 79 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 79 (202)
.-++||.|.||++|++.+... ..+++||+++.+.+ ..+.+.......+.+ .+. ...+++.++ .++++
T Consensus 71 ~v~lTH~H~DH~ggl~~~~~~----~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~i 142 (284)
T 2p4z_A 71 KVVLTHGHYDHIGGLKGLLER----NPEVKIYTHKEILN---KKYAMRKGGQFEEIGFDLSFYEKYKNNFVLID-KDAEI 142 (284)
T ss_dssp EEECCCSCHHHHTTHHHHHHH----CTTCEEEEEGGGGS---CEEEECSSSCEEECSCCHHHHHHHGGGEEEES-SCEEE
T ss_pred EEEECCCCchhhccHHHHHHH----cCCCceecCHHHHH---HHhccCccccccccccccchhhhcCceEEEeC-CCeEE
Confidence 357999999999999987532 13689999987753 111110000000001 000 011344443 35666
Q ss_pred C-C-EEEEEEEecCCCCcee-e--eEEEccEEEeCCCCCCCcchhhhccCCC--EEEEeccCC--------------CCC
Q 028873 80 Q-D-LKITPLPVWHGAGYRS-L--GFRFGNICYISDVSEIPEETYPFLQDCE--ILIMDALRP--------------DRS 138 (202)
Q Consensus 80 ~-~-~~I~~~~v~H~~~~~~-~--gy~i~~~~y~~Dt~~~~~~~~~~~~~~D--lLi~e~~~~--------------~~~ 138 (202)
+ + +.+.++|..|+. ++ . +|+++.++|++|+ ++++...+++++| +||.+|+.. ..+
T Consensus 143 ~~gi~~i~~~~~~h~~--~~~~g~~~~~~~~~y~~D~--~~de~~~~~~~~dglvli~gcsH~Gi~n~l~~~~~~~~~~~ 218 (284)
T 2p4z_A 143 EEGFYVITNTDITYDN--EFTTKNFFVEKEGKRIPDK--FLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSY 218 (284)
T ss_dssp ETTEEEECSCCCCSCC--HHHHTTEEEEETTEEEECC--CTTCCEEEEEETTEEEEEESSCTTCHHHHHHHHHHHHTCSC
T ss_pred eCCEEEEeeeCCcccc--ccCCCceEEEcCCCEecCC--CCCceEEEEEcCCcEEEEECCCCcCHHHHHHHHHHHcCCCc
Confidence 4 4 777889999987 33 3 4999989999995 5566778889999 678777632 111
Q ss_pred -----CCCCC------CHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 -----SSTHF------GLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 -----~~~H~------~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
...|+ ++++++++++++++|++++||+++..+.+++++.+.. ++.+|+|||+|++
T Consensus 219 i~~~igg~Hl~~~~~~~~~~a~~~~~~~~~~~l~l~H~~~~~~~~~~~~~~~~-------~v~~a~~G~~i~l 284 (284)
T 2p4z_A 219 IKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKD-------KISYLTTSSSIVV 284 (284)
T ss_dssp BSEEEECCCCTTCCHHHHHHHHHHHHHTTBCCEEECGGGCHHHHHHHHHHHGG-------GEEECCTTCEEEC
T ss_pred eEEEEEcccCCCCCHHHHHHHHHHHHcCCCCEEEeeCcCcHHHHHHHHHHhCC-------CEEEcCCCcEEeC
Confidence 36799 9999999999999999999999997766666555543 7999999999975
No 15
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.70 E-value=1.5e-16 Score=140.85 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=106.5
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCC-EE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQD-LK 83 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~ 83 (202)
-+|||.|.||++||+.|......+..+++||+++.+.+.++..+... . .+. ...+++.+++ +.+++++ ++
T Consensus 78 I~iTH~H~DHiggl~~L~~~~~~~~~~~pIy~~~~t~~~l~~~l~~~---~--~~~---~~~~~~~v~~g~~~~lg~~~~ 149 (562)
T 3bk2_A 78 WVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEF---G--LRP---GAFNLKEISPDDRIQVGRYFT 149 (562)
T ss_dssp EECCCCCHHHHTTHHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHT---T--CCS---TTSEEEEECTTCEEEETTTEE
T ss_pred EEECCCChHHhCCHHHHHHhhccccCCceEEeCHHHHHHHHHHHHHc---C--CCc---CCceEEEECCCCEEEeCCCEE
Confidence 47999999999999999754323445799999999988776543210 0 000 0234666754 7899998 99
Q ss_pred EEEEEecCCCCceeeeEEEc----cEEEeCCCCCC--------Cc--chhhhc-cCCCEEEEeccCCCCCCCCCCCH---
Q 028873 84 ITPLPVWHGAGYRSLGFRFG----NICYISDVSEI--------PE--ETYPFL-QDCEILIMDALRPDRSSSTHFGL--- 145 (202)
Q Consensus 84 I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~--------~~--~~~~~~-~~~DlLi~e~~~~~~~~~~H~~~--- 145 (202)
|+++++.|+. ..++||+|+ +++|+||+... ++ .+.+.. +++|+||+|+|+...+ +|...
T Consensus 150 v~~~~~~H~~-~gs~~~~i~~~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~--g~~~~e~~ 226 (562)
T 3bk2_A 150 LDLFRMTHSI-PDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERP--GYTPSEME 226 (562)
T ss_dssp EEEEECCCSS-SSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCC--SCCCCHHH
T ss_pred EEEEECCCCC-cccEEEEEEECCeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEecccCCCCC--CCCChHHH
Confidence 9999999975 269999996 89999999632 11 122222 6899999999987532 33332
Q ss_pred -H-HHHHHHHHcCCCEEEEecCCCCC
Q 028873 146 -P-RALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 146 -~-ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
. ++.+++++.+ ++++++|++++.
T Consensus 227 v~~~l~~~~~~~~-grvii~~fas~~ 251 (562)
T 3bk2_A 227 IAKELDRVIGRAP-GRVFVTTFASHI 251 (562)
T ss_dssp HHHHHHHHHHHCS-SCEEEECCTTCH
T ss_pred HHHHHHHHHHhCC-CEEEEEEccccc
Confidence 2 3335555555 899999999876
No 16
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=99.69 E-value=2.6e-16 Score=123.77 Aligned_cols=89 Identities=16% Similarity=0.293 Sum_probs=75.5
Q ss_pred ceEeCCEEEEEEEecCCCC-----ceeeeEEEc----cEEEeCCCCCCCc-chhhhccCCCEEEEeccCCCCCCCCCCCH
Q 028873 76 PFTVQDLKITPLPVWHGAG-----YRSLGFRFG----NICYISDVSEIPE-ETYPFLQDCEILIMDALRPDRSSSTHFGL 145 (202)
Q Consensus 76 ~~~~~~~~I~~~~v~H~~~-----~~~~gy~i~----~~~y~~Dt~~~~~-~~~~~~~~~DlLi~e~~~~~~~~~~H~~~ 145 (202)
.+++++++|+++++.|+.. ..++||+|+ +++|+|||++.++ +..+.++++|++++++. ..+|+++
T Consensus 80 ~~~~~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g~~i~~~GDt~~~~~~~~~~~~~~~Dvlil~~g-----~~~h~~~ 154 (220)
T 1vjn_A 80 AYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVG-----GTYTIGP 154 (220)
T ss_dssp EEEETTEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTCCSCCCHHHHHHHCCCSEEEEECC-----SSSSCCH
T ss_pred eEEECCEEEEEEeeecCCCCCccCCCcEEEEEEECCeEEEEeCCCCCcchHHHHHhhCCCCEEEEcCC-----CcCcCCH
Confidence 4667899999999999752 257999997 8999999998873 35566689999999994 3579999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCC
Q 028873 146 PRALEEVRKIQPKRTLFIGMMHLM 169 (202)
Q Consensus 146 ~ea~~~~~~~~~k~lvltHl~~~~ 169 (202)
++|+++++++++|+++++|+++..
T Consensus 155 ~~a~~~~~~~~~k~vi~~H~~~~~ 178 (220)
T 1vjn_A 155 KEAKEVADLLNAKVIIPMHYKTKY 178 (220)
T ss_dssp HHHHHHHHHTTCSEEEEESCCCSS
T ss_pred HHHHHHHHhcCCCEEEEEeccccc
Confidence 999999999999999999999975
No 17
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.65 E-value=2e-15 Score=127.18 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=92.6
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-+|||.|.||++||+. ....+||+++.+.+.++..+... ...++.++ ++++++++++|
T Consensus 55 I~lTH~H~DHiggl~~--------~~~~pIy~s~~t~~ll~~~l~~~-------------~~~~~~l~~g~~~~ig~~~v 113 (367)
T 4b87_A 55 YFLTHFHSDHYAGLSK--------HFTFPVYCSEITGNLLKNKLHVQ-------------EQYIHPLPLDTECIVNGVKV 113 (367)
T ss_dssp EECCCCCHHHHTTCST--------TCCSCEEECHHHHHHHHHHSCCC-------------GGGEEECCBTSCEEETTEEE
T ss_pred EEECcChHHHhCCccc--------ccCCcEEECHHHHHHHHHHhccc-------------cceEEEeCCCCEEEECCEEE
Confidence 4789999999999982 12578999999998887654310 11245554 47899999999
Q ss_pred EEEEecCCCCceeeeEEEc-----cEEEeCCCCCCCcchhhhc--cCCCEEEEeccCCCCCCCCCCCHHHHHH
Q 028873 85 TPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDRSSSTHFGLPRALE 150 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~~~~~~~~--~~~DlLi~e~~~~~~~~~~H~~~~ea~~ 150 (202)
+++++.|.. .+++|+|+ +++|+||++..++.....+ +++|+||+||++.+ +...|.+-+++.+
T Consensus 114 ~~~~agH~~--gs~~~~i~~~~g~~il~tGD~~~~~~~~~~~l~~~~~D~Li~EsTy~~-~~~~~ps~~~~~~ 183 (367)
T 4b87_A 114 VLLDANHCP--GAVMILFYLPNGTVILHTGDFRADPSMERSLLADQKVHMLYLDTTYCS-PEYTFPSQQEVIR 183 (367)
T ss_dssp EEEECSSST--TCEEEEEECTTSCEEEECCSCCCCGGGGGSGGGTSCCCEEEECCTTCS-TTCCCCCHHHHHH
T ss_pred EEEeCCCcC--CcEEEEEEcCCCcEEEEecCcccCcccchhhhccCCCCEEEEecccCC-CCCCCCCHHHHHH
Confidence 999999976 89999995 4999999997764332334 48999999999986 4456788777765
No 18
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.65 E-value=3.3e-15 Score=124.45 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=96.3
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee--------CCCce
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII--------DEEPF 77 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 77 (202)
-+|||.|.||++||+.+. .++||+++.+.+.++..+... .. .++.+ +++.+
T Consensus 28 i~lTH~H~DHiggl~~l~--------~~pVy~s~~t~~ll~~~l~~~--~~-----------~~~~~~~~~~~~i~~~~~ 86 (336)
T 3zdk_A 28 FFLSHMHSDHTVGLSSTW--------ARPLYCSPITAHLLHRHLQVS--KQ-----------WIQALEVGESHVLPLDEI 86 (336)
T ss_dssp EECCCCCGGGSTTCSTTC--------CSCEEECHHHHHHHHHHHCCC--TT-----------TEEECCTTSEEEEESSSS
T ss_pred EEECCChHHHHCchHHHc--------CCCEEecHHHHHHHHHhhhhc--cc-----------ceEecCCCCeEEecCccc
Confidence 479999999999999862 478999999998887643210 00 01222 22334
Q ss_pred EeCCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhh-----hccCCCEEEEeccCCCCCCCCCCCHHHH
Q 028873 78 TVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYP-----FLQDCEILIMDALRPDRSSSTHFGLPRA 148 (202)
Q Consensus 78 ~~~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~-----~~~~~DlLi~e~~~~~~~~~~H~~~~ea 148 (202)
.+++++|+++++.|.. .++||+|+ +++|+||++..+ +... ..+++|+||+|||+.+.. ..+.+-+++
T Consensus 87 ~~g~~~v~~~~~~H~~--gs~~~~i~~~~~~i~~tGD~~~~~-~~~~~~~l~~~~~vD~Li~DsT~~~~~-~~~pse~~v 162 (336)
T 3zdk_A 87 GQETMTVTLLDANHCP--GSVMFLFEGYFGTILYTGDFRYTP-SMLKEPALTLGKQIHTLYLDNTNCNPA-LVLPSRQEA 162 (336)
T ss_dssp SSCEEEEEEEECSSST--TCEEEEEEETTEEEEECCSCCCCG-GGGGCGGGSSCCCCSEEEECCTBCCTT-CCCCCHHHH
T ss_pred ccCCEEEEEEECCCCc--ceEEEEEEeCCceEEEeCCCCCCc-ccccchhhhccCCccEEEEecCCCCCC-CCCCCHHHH
Confidence 4589999999999965 89999997 799999998654 3322 257899999999998743 345555444
Q ss_pred HH----HHHHcCCCEEEEecC
Q 028873 149 LE----EVRKIQPKRTLFIGM 165 (202)
Q Consensus 149 ~~----~~~~~~~k~lvltHl 165 (202)
.+ ++++..-++++++++
T Consensus 163 ~~~l~~~i~~~~~g~vii~~f 183 (336)
T 3zdk_A 163 AHQIVQLIRKHPQHNIKIGLY 183 (336)
T ss_dssp HHHHHHHHHTCTTSEEEEEEC
T ss_pred HHHHHHHHHhCCCCcEEEeec
Confidence 43 444444458999998
No 19
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.58 E-value=1.7e-14 Score=127.52 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=103.8
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I 84 (202)
-+|||.|.||++|++.|... ...+||+++.+.+.++..+... . .. +..+++.++. +++++++++|
T Consensus 70 I~lTH~H~DHiggl~~l~~~-----~~~pIy~t~~t~~ll~~~l~~~---~--~~----~~~~~~~v~~g~~~~ig~~~v 135 (555)
T 3zq4_A 70 LFITHGHEDHIGGIPYLLRQ-----VNIPVYGGKLAIGLLRNKLEEH---G--LL----RQTKLNIIGEDDIVKFRKTAV 135 (555)
T ss_dssp EEESCCCHHHHTTHHHHHTT-----CCCCEEECHHHHHHHHHHHHHH---S--TT----TTCCEEECCTTCCEEETTEEE
T ss_pred EEECCCchhhhCCHHHHHHh-----cCceEEECHHHHHHHHHHHHHc---C--cc----CCCceEEeCCCCEEEECCEEE
Confidence 47899999999999988632 2578999999988776543210 0 00 1123666654 7899999999
Q ss_pred EEEEecCCCCceeeeEEEc----cEEEeCCCCCCCc------chhhhc----cCCCEEEEeccCCCCCCCCCCCHHHHHH
Q 028873 85 TPLPVWHGAGYRSLGFRFG----NICYISDVSEIPE------ETYPFL----QDCEILIMDALRPDRSSSTHFGLPRALE 150 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~------~~~~~~----~~~DlLi~e~~~~~~~~~~H~~~~ea~~ 150 (202)
+++++.|+. ..+++|+++ +++|+||+...+. .+..+. +++|+||+|||+.+.+. ...+-++..+
T Consensus 136 ~~~~~~H~~-pgs~~~~i~~~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT~~~~~~-~~~se~~v~~ 213 (555)
T 3zq4_A 136 SFFRTTHSI-PDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPE-FTMSERRVGE 213 (555)
T ss_dssp EEEEEBCSS-SSEEEEEEEETTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECTTTTCCS-CCCCHHHHHH
T ss_pred EEEeCCCCC-cCcEEEEEEECCcEEEEeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEecCcccCCCC-CCCCHHHHHH
Confidence 999999965 269999996 8999999975321 122333 58999999999987432 2344455554
Q ss_pred HHHHc---CCCEEEEecCCCCC
Q 028873 151 EVRKI---QPKRTLFIGMMHLM 169 (202)
Q Consensus 151 ~~~~~---~~k~lvltHl~~~~ 169 (202)
.+.++ ..+++++++++...
T Consensus 214 ~i~~~~~~~~grvii~~fasnv 235 (555)
T 3zq4_A 214 SIHDIFRKVDGRIIFATFASNI 235 (555)
T ss_dssp HHHHHHHHCCSCEEEECCTTCH
T ss_pred HHHHHHHhCCCEEEEEEChhHH
Confidence 44433 25799999988654
No 20
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=99.51 E-value=4.7e-14 Score=121.17 Aligned_cols=152 Identities=13% Similarity=0.013 Sum_probs=99.9
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee-eecC-CCCCCCc-ccc-eEEEeeCC-CceEeC
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL-VDTS-GIIPGAA-VSE-LQFNIIDE-EPFTVQ 80 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~-~~~~-~~~~~~~-~~~-~~~~~~~~-~~~~~~ 80 (202)
-+|||.|.||++|++.|... ..+.+||+++.+.+.++..+... .... ..++... ... -+++.++. +.++++
T Consensus 55 VllTH~H~DH~gglp~l~~~----~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l~ 130 (431)
T 3iek_A 55 VLLTHAHLDHVGRLPKLFRE----GYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLG 130 (431)
T ss_dssp EECSCCCHHHHTTHHHHHHT----TCCSCEEECHHHHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEET
T ss_pred EEECCCChHHhccHHHHHHc----CCCCeEEEcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEeC
Confidence 47899999999999998632 23678999999987665422100 0000 0000000 000 12455553 788899
Q ss_pred CEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchh---hhccCCCEEEEeccCCCCCCCCCCCH----HHHH
Q 028873 81 DLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETY---PFLQDCEILIMDALRPDRSSSTHFGL----PRAL 149 (202)
Q Consensus 81 ~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~---~~~~~~DlLi~e~~~~~~~~~~H~~~----~ea~ 149 (202)
+++|+++++.|.. .+.+|+++ +++|+||+++.++... +..+++|+||+||+|.++. |-+. ++..
T Consensus 131 g~~v~~~~agH~~--Gs~~~~i~~~~~~ilfsGD~~~~~~~~l~~~~~~~~~D~LI~EsTy~~~~---h~~~~~~~~~l~ 205 (431)
T 3iek_A 131 ALSLAFGQAGHLP--GSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRP---HRPYRETVREFL 205 (431)
T ss_dssp TEEEEEEECCSST--TCEEEEEEETTEEEEECCCCCCTTSSSSCCCCBCCCCSEEEEECTTTTCC---CCCHHHHHHHHH
T ss_pred CEEEEEEeCCCCc--CceEEEEEECCEEEEEeCCCCCCCCcccCCccccCCccEEEEEcccCCcC---CCChHHHHHHHH
Confidence 9999999999987 79999996 7999999997654333 5667899999999998643 3333 3333
Q ss_pred HHHHHc--CCCEEEEecCC
Q 028873 150 EEVRKI--QPKRTLFIGMM 166 (202)
Q Consensus 150 ~~~~~~--~~k~lvltHl~ 166 (202)
+.+++. +-.++++..++
T Consensus 206 ~~i~~~~~~gg~vlIp~fa 224 (431)
T 3iek_A 206 EILEKTLSQGGKVLIPTFA 224 (431)
T ss_dssp HHHHHHHHTTCEEEEECCT
T ss_pred HHHHHHHHcCCeEEEEecc
Confidence 333332 34577777666
No 21
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.46 E-value=4e-13 Score=120.84 Aligned_cols=187 Identities=17% Similarity=0.109 Sum_probs=110.7
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-eee--ecCCCCCCCccc-----ceEEEeeC-CC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-YLV--DTSGIIPGAAVS-----ELQFNIID-EE 75 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~-----~~~~~~~~-~~ 75 (202)
.-+|||.|.||++|++.|.... ..+.+||+++.+.+.++..+. +.. ......+..... .-+++.++ ++
T Consensus 251 ~VllTH~H~DHiGglp~L~~~~---~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 327 (651)
T 3af5_A 251 AIIITHAHLDHCGMLPYLFRYN---LFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGE 327 (651)
T ss_dssp EEECSCSSHHHHTTHHHHHHTT---CCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTC
T ss_pred EEEECCCChHhhcCHHHHHhcC---CCCceEEEcHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCC
Confidence 3479999999999999986421 025789999999876553221 000 000000000000 01245554 37
Q ss_pred ceEe-CCEEEEEEEecCCCCceeeeEEEc------cEEEeCCCCCCCcchhh----hccCCCEEEEeccCCCCCCCCCCC
Q 028873 76 PFTV-QDLKITPLPVWHGAGYRSLGFRFG------NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFG 144 (202)
Q Consensus 76 ~~~~-~~~~I~~~~v~H~~~~~~~gy~i~------~~~y~~Dt~~~~~~~~~----~~~~~DlLi~e~~~~~~~~~~H~~ 144 (202)
.+++ ++++|+++++.|.. .+.+|+++ +++|+||+++.++.+++ ...++|+||+||+|.+.. ..|.+
T Consensus 328 ~~~l~ggi~v~~~~~gH~~--Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~~~~~DvLI~EsT~~~~~-~~h~s 404 (651)
T 3af5_A 328 VRDISPDIRLTLHNAGHIL--GSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGAN-DIQMP 404 (651)
T ss_dssp CEEEETTEEEEEEECSSST--TCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCBCSSCSEEEEECTTCSTT-CCCCC
T ss_pred EEEecCCEEEEEecCCCCc--CcEEEEEEECCCceEEEEeCCCCCCcccccccccccCCCCCEEEECCCCCCCC-CCCCC
Confidence 8999 99999999999976 78899986 79999999876543433 246899999999998632 22444
Q ss_pred HHH----HHHHHHHc--CCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 145 LPR----ALEEVRKI--QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 145 ~~e----a~~~~~~~--~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
-.+ ..+..++. .-.++++..++- ....++...+++..+....++-+..|||..
T Consensus 405 ~~~~~~~l~~~i~~~l~~~g~vlIp~fav-gR~qell~~l~~~~~~~~l~~~I~~dg~a~ 463 (651)
T 3af5_A 405 REEAEKRLIEVIHNTIKRGGKVLIPAMAV-GRAQEVMMVLEEYARIGGIEVPIYLDGMIW 463 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCTT-THHHHHHHHHHHHHTTTCCCSCEEEESSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeccCc-cHHHHHHHHHHHhhhhcCCCCcEEEechHH
Confidence 332 22333332 346777766662 223344444443322111123455677643
No 22
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.36 E-value=1.6e-12 Score=116.69 Aligned_cols=154 Identities=13% Similarity=0.014 Sum_probs=97.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-eee--ecCCCCCCCcccc-----eEEEeeC-CC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-YLV--DTSGIIPGAAVSE-----LQFNIID-EE 75 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~-----~~~~~~~-~~ 75 (202)
.-+|||.|.||++||+.|... ....+||+++.+.+.++..+. +.. ......+...... -+++.++ ++
T Consensus 237 ~VlLTH~H~DHiGglp~L~~~----~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~ 312 (636)
T 2ycb_A 237 AVIITHAHLDHSGFLPYLYHY----GYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGE 312 (636)
T ss_dssp EEECSSSSHHHHTTHHHHHHT----TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTC
T ss_pred EEEECCCChHHhcCHHHHHhc----CCCCeEEEcchHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCC
Confidence 347999999999999988642 235789999999876543211 000 0000000000000 1245554 37
Q ss_pred ceEe-CCEEEEEEEecCCCCceeeeEEEc------cEEEeCCCCCCCcchhh----hccCCCEEEEeccCCCCCCCCCCC
Q 028873 76 PFTV-QDLKITPLPVWHGAGYRSLGFRFG------NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFG 144 (202)
Q Consensus 76 ~~~~-~~~~I~~~~v~H~~~~~~~gy~i~------~~~y~~Dt~~~~~~~~~----~~~~~DlLi~e~~~~~~~~~~H~~ 144 (202)
.+++ ++++|+++++.|.. .+.+|+++ +++|+||+++.++.+++ ...++|+||+||++.... ..|.+
T Consensus 313 ~~~l~ggi~v~~~~~gH~~--Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~~~~~D~LI~EsT~~~~~-~~h~s 389 (636)
T 2ycb_A 313 VTDIAPDIRLTLHNAGHIL--GSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHE-DVQPS 389 (636)
T ss_dssp CEEEETTEEEEEEECCSST--TCEEEEEEETTTTTCEEECCSCCSSCCSSSCCCCCCCSCCSEEEEECTTCSGG-GCCCC
T ss_pred EEEecCCeEEEEeCCCCCC--CcEEEEEEECCCeEEEEEECCCCCCcccccCCcccCCCCCeEEEECCCCCCCC-CCCCC
Confidence 8999 99999999999976 78999995 69999999875543332 346899999999997532 22443
Q ss_pred H----HHHHHHHHH---cCCCEEEEecC
Q 028873 145 L----PRALEEVRK---IQPKRTLFIGM 165 (202)
Q Consensus 145 ~----~ea~~~~~~---~~~k~lvltHl 165 (202)
. ++..+.+++ .+.+.++-+|-
T Consensus 390 ~~~~~~~l~~~i~~~~~~~g~vlIp~fa 417 (636)
T 2ycb_A 390 RNRAEKELVKTIYSTLRRGGKILIPVFA 417 (636)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3 334444444 36566666653
No 23
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.35 E-value=8.4e-13 Score=119.73 Aligned_cols=130 Identities=8% Similarity=-0.007 Sum_probs=84.5
Q ss_pred cchhhhhccccCChhhhhhhh-ccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCC----Cc-c----cce-EEEeeCC
Q 028873 6 STIALFVGFLPMGLDDLRDWT-NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPG----AA-V----SEL-QFNIIDE 74 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~-~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~----~~-~----~~~-~~~~~~~ 74 (202)
-+|||.|.||++||+.|..-+ ......++||+++.+.+.++..+..........+. .+ . ..+ +++.++.
T Consensus 57 VlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ 136 (717)
T 2i7x_A 57 IILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKY 136 (717)
T ss_dssp EECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECT
T ss_pred EEECCCChHHHCCHHHHHHhhhhcccCCceEEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecC
Confidence 479999999999999987421 01113578999998876443211100000000000 00 0 001 2455543
Q ss_pred -CceEe----CCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcch-------------hhhccCCCEEEEec
Q 028873 75 -EPFTV----QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEET-------------YPFLQDCEILIMDA 132 (202)
Q Consensus 75 -~~~~~----~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~-------------~~~~~~~DlLi~e~ 132 (202)
+.+++ ++++|+++++.|.. .+.+|+|+ +++|+||++..++.+ ++.+.++|+||+||
T Consensus 137 ge~i~l~~~~ggi~V~~~~aGHs~--Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~Es 214 (717)
T 2i7x_A 137 SQLVDLRSRYDGLTLLAYNAGVCP--GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTL 214 (717)
T ss_dssp TCCEEETTTTTTEEEEEEECSSST--TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECC
T ss_pred CCEEEEeecCCCEEEEEECCCCCC--CcEEEEEEeCCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcC
Confidence 77888 89999999999987 78999996 899999997543322 13456899999999
Q ss_pred cCCCC
Q 028873 133 LRPDR 137 (202)
Q Consensus 133 ~~~~~ 137 (202)
++...
T Consensus 215 Ty~~~ 219 (717)
T 2i7x_A 215 DRFGS 219 (717)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 99763
No 24
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=99.35 E-value=3.8e-12 Score=110.03 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=81.6
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-ee--eec---CCCCCCCcc-c-ceEEEeeCC-Cc
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-YL--VDT---SGIIPGAAV-S-ELQFNIIDE-EP 76 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-~~--~~~---~~~~~~~~~-~-~~~~~~~~~-~~ 76 (202)
-+|||.|.||++||+.+... .+.+.+||+++.+.+.++.... +. ... ...+..... . .-+++.++. ++
T Consensus 67 VllTH~H~DH~ggl~~l~~~---~~~~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (459)
T 2i7t_A 67 LLISHFHLDHCGALPWFLQK---TSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEV 143 (459)
T ss_dssp EECCCSSHHHHTTHHHHHHH---SSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCC
T ss_pred EEECCCChhhhhhhHHHHHh---cCCCCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCE
Confidence 47999999999999988632 1235689999988665433211 00 000 000000000 0 012455543 78
Q ss_pred eEeCCEEEEEEEecCCCCceeeeEEEc----cEEEeCCCCCCCcchhh---h-ccCCCEEEEeccCCC
Q 028873 77 FTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYP---F-LQDCEILIMDALRPD 136 (202)
Q Consensus 77 ~~~~~~~I~~~~v~H~~~~~~~gy~i~----~~~y~~Dt~~~~~~~~~---~-~~~~DlLi~e~~~~~ 136 (202)
+++++++|++++..|.. .+.+|+++ +++|+||++..++.... + ..++|+||+|++|..
T Consensus 144 ~~~~gi~v~~~~~GH~~--Gs~~~~i~~~~~~il~sGD~~~~~~~~~~~~~~~~~~~D~Li~Esty~~ 209 (459)
T 2i7t_A 144 KEVAGIKFWCYHAGHVL--GAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGT 209 (459)
T ss_dssp EEETTEEEEEEECCSST--TCEEEEEEETTEEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTT
T ss_pred EEECCEEEEEEeCCCcc--CcEEEEEEECCcEEEEeCCCCCCCCcccCCCCcCCCCCeEEEECCCCCC
Confidence 88999999999999987 79999997 89999999976542221 1 148999999999985
No 25
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.33 E-value=1.4e-11 Score=110.54 Aligned_cols=186 Identities=15% Similarity=0.041 Sum_probs=107.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-ee--eecCCCCCCCcccc-----eEEEeeC-CC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-YL--VDTSGIIPGAAVSE-----LQFNIID-EE 75 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~-----~~~~~~~-~~ 75 (202)
.-+|||.|.||++|++.|... ....+||+++.+.+.++..+. +. .......+...... -+++.++ ++
T Consensus 240 ~VllTH~H~DHiGgl~~L~~~----~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~ 315 (640)
T 2xr1_A 240 AVIVTHAHLDHQGLVPLLFKY----GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEE 315 (640)
T ss_dssp EEECCSSCHHHHTTHHHHHHT----TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTC
T ss_pred EEEECCCChhhhccHHHHHhc----CCCCeEEECHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCC
Confidence 347899999999999988642 234789999998776543211 00 00000000000000 1245554 37
Q ss_pred ceEe-CCEEEEEEEecCCCCceeeeEEEc------cEEEeCCCCCCCcchhh----hccCCCEEEEeccCCCCCCCCCCC
Q 028873 76 PFTV-QDLKITPLPVWHGAGYRSLGFRFG------NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFG 144 (202)
Q Consensus 76 ~~~~-~~~~I~~~~v~H~~~~~~~gy~i~------~~~y~~Dt~~~~~~~~~----~~~~~DlLi~e~~~~~~~~~~H~~ 144 (202)
.+++ ++++|+++++.|.. .+.+|.++ +++|+||+++.++.+.+ ...++|+||+||++.+ .+..|.+
T Consensus 316 ~i~l~gg~~v~~~~~GH~~--Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~~~~~DvLi~EsT~g~-~~~~h~s 392 (640)
T 2xr1_A 316 VTDIAPDIKLTFHNAGHIL--GSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNKFPRVETVISEATYGN-ANAFQPA 392 (640)
T ss_dssp CEEEETTEEEEEEECSSST--TCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCCBCSCCSEEEEECTTCS-TTCCCCC
T ss_pred EEEecCCEEEEEEcCCCCc--CcEEEEEEECCceEEEEEECCCCCCCccccccccccCCCCcEEEECCCCCC-CccCCCC
Confidence 8999 99999999999976 78899985 69999999865433333 2468999999999986 2333555
Q ss_pred HHHH-HHHHHHcC-----CCEEEEecCCCCCChHHHHHHHhhccccCC-CcEEEeecCeEE
Q 028873 145 LPRA-LEEVRKIQ-----PKRTLFIGMMHLMDHEKVNEELLKLMETEG-LDVQLSYDGLRV 198 (202)
Q Consensus 145 ~~ea-~~~~~~~~-----~k~lvltHl~~~~~~~~~~~~~~~~~~~~~-~~v~~A~DG~~i 198 (202)
..+. .++++.+. -.++++..++-.. ..++...+++..+... .++-+..|||..
T Consensus 393 ~~~~~~~l~~~i~~~~~~~g~vlIp~favGR-~qell~~l~~~~~~~~~~~~~V~~dg~a~ 452 (640)
T 2xr1_A 393 LKDAEKHLQMVVKNTIERGGIAVIPAFAVGR-SQEVMIVLEESIRKGLIPEVPVYLDGMIW 452 (640)
T ss_dssp HHHHHHHHHHHC--------CEEEECCTTTH-HHHHHHHHHHHHHHTSSCCCCEEEESSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecccch-HHHHHHHHHHHHHhCCCCCCcEEEEhHHH
Confidence 4432 22333222 2456666555322 3344333443221110 134556677643
No 26
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.12 E-value=1.1e-10 Score=92.94 Aligned_cols=155 Identities=10% Similarity=-0.025 Sum_probs=95.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHh-------------cCceeeecCCCCCCCcccceEEEe
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK-------------THYYLVDTSGIIPGAAVSELQFNI 71 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (202)
.-++||.|.||++|++.+.... ..+||+++.+.+.+.+ .+..+ ...+.......+..++..
T Consensus 53 ~vi~TH~H~DH~gg~~~l~~~~-----~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 126 (261)
T 3adr_A 53 YIVLTHLHIDHIGLLPELLQVY-----KAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDL-YYVYGGLEKKLDQDKVIE 126 (261)
T ss_dssp EEECSCCSGGGTTTHHHHHHHS-----CCEEEEETTCTHHHHSHHHHHHHHHHHHHHHTHH-HHHHCCCCSCCCGGGEEE
T ss_pred EEEECCCCccccCCHHHHHHHh-----CCeEEECHHHHHHhcCchhHHHHHHHHHHHHHHH-HHHhcccccCCCccceEe
Confidence 3478999999999999876431 4678888765544321 01000 000000000011112445
Q ss_pred eC-CCceEeCCEEEEEEEec-CCCCceeeeEEEccEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHH
Q 028873 72 ID-EEPFTVQDLKITPLPVW-HGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRAL 149 (202)
Q Consensus 72 ~~-~~~~~~~~~~I~~~~v~-H~~~~~~~gy~i~~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~ 149 (202)
++ ++.+.+++++|++++++ |.. .+++|++++++|+||+.... . .+ .+..+.. ....+..+.+++
T Consensus 127 ~~~g~~~~~g~~~i~~~~~pGHt~--~~~~~~~~~~lf~GD~~~~~--~----~~--~~~~~~~----~~~~~~~~~~sl 192 (261)
T 3adr_A 127 VEGNEEFDLGGYRMRLIYTPGHAR--HHMSVLVDDFLFTGDSAGAY--F----NG--VVIPTTP----PVIDYKMYMESL 192 (261)
T ss_dssp ECSCCEEECSSSEEEEEECTTSCT--TCEEEEETTEEEEETSSCEE--E----TT--EEECCCC----SCCCHHHHHHHH
T ss_pred cCCCCEEEECCEEEEEEECCCCCC--ccEEEEECCEEEEcCccccc--c----cc--cccCCCC----CCCCHHHHHHHH
Confidence 54 47788999999999999 877 78999999999999996432 1 11 2322211 113344567777
Q ss_pred HHHHHcCCCEEEEecCCCCC--ChHHHHHHHh
Q 028873 150 EEVRKIQPKRTLFIGMMHLM--DHEKVNEELL 179 (202)
Q Consensus 150 ~~~~~~~~k~lvltHl~~~~--~~~~~~~~~~ 179 (202)
+.+.+.+++.++..|..+.. +..+..++.+
T Consensus 193 ~~l~~l~~~~v~~~H~~~~~~~~~~~~l~~~~ 224 (261)
T 3adr_A 193 KRQIELKPKVVGFAHGGLVSPKIMEEHLKQML 224 (261)
T ss_dssp HHHHHTCCSEEEETTTEEECTHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEeCCCCccCCcCHHHHHHHHH
Confidence 77788899999999988866 3444433333
No 27
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=98.89 E-value=1.1e-08 Score=86.30 Aligned_cols=89 Identities=9% Similarity=0.077 Sum_probs=67.9
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.+.... ...+||+++.+.+.+++.++. + ..+.+.++ ++.+++++.+
T Consensus 75 ~iiiTH~H~DH~gg~~~l~~~~----~~~~v~~~~~~~~~l~~~~~~--------~-----~~~~~~~~~g~~~~~g~~~ 137 (398)
T 1ycg_A 75 YLVVNHTESDHAGAFPAIMELC----PDAHVLCTQRAFDSLKAHYSH--------I-----DFNYTIVKTGTSVSLGKRS 137 (398)
T ss_dssp EEEESCCSHHHHTTHHHHHHHC----TTCEEEECHHHHHHHHHHTCS--------C-----CCEEEECCTTCEEECSSCE
T ss_pred EEEeCCCCcchhhhHHHHHHHC----CCCEEEEcHHHHHHHHHHhCC--------C-----CcceEEeCCCCEEeeCCcE
Confidence 3478999999999999886431 358999999998888764321 1 12245554 4788999999
Q ss_pred EEEEEec--CCCCceeeeEEEc--cEEEeCCCC
Q 028873 84 ITPLPVW--HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
++.++++ |.. .++++.+. +++|+||+.
T Consensus 138 ~~~~~~p~gH~~--~~~~~~~~~~~~lf~GD~~ 168 (398)
T 1ycg_A 138 LTFIEAPMLHWP--DSMFTYVPEEALLLPNDAF 168 (398)
T ss_dssp EEEEECTTSSST--TCEEEEETTTTEEEEETTT
T ss_pred EEEEeCCCCCCC--CcEEEEECCCcEEEecccc
Confidence 9999998 766 78888885 899999994
No 28
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=98.87 E-value=1.1e-08 Score=86.35 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=67.9
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.|.... ...+||+++.+.+.+++.++. + ....+.++ ++.+++++.+
T Consensus 74 ~iiiTH~H~DH~gg~~~l~~~~----~~~~v~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~g~~~~~g~~~ 136 (402)
T 1e5d_A 74 YLVIQHLELDHAGALPALIEAC----QPEKIFTSSLGQKAMESHFHY--------K-----DWPVQVVKHGETLSLGKRT 136 (402)
T ss_dssp EEEECCCSHHHHTTHHHHHHHH----CCSEEEEEHHHHHHHHHHHCC--------S-----SCCEEEECTTCEEECSSCE
T ss_pred EEEeCCCCccccccHHHHHHHC----CCCEEEEChHHHHHHHHHhCC--------C-----CCceEEcCCCCEEEECCCE
Confidence 3479999999999999886432 248899999998887764321 1 01244554 4789999999
Q ss_pred EEEEEec--CCCCceeeeEEEc--cEEEeCCCC
Q 028873 84 ITPLPVW--HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
++.++++ |.. .++++.+. +++|+||+.
T Consensus 137 ~~~~~~p~gH~~--~~~~~~~~~~~~l~~GD~~ 167 (402)
T 1e5d_A 137 VTFYETRMLHWP--DSMVSWFADEKVLISNDIF 167 (402)
T ss_dssp EEEEECTTSSST--TCEEEEETTTTEEEEETTT
T ss_pred EEEEeCCCCCCC--CcEEEEECCCCEEEecccc
Confidence 9999998 977 78888885 899999994
No 29
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=98.83 E-value=1.7e-08 Score=85.16 Aligned_cols=90 Identities=16% Similarity=0.052 Sum_probs=68.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.+.... ...+||+++.+.+.+++.+.. .. ....+.+. ++.+++++.+
T Consensus 78 ~ii~TH~H~DH~gg~~~l~~~~----p~~~v~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~g~~~~~g~~~ 141 (404)
T 2ohh_A 78 YIIQNHVEKDHSGVLVELHRRF----PEAPIYCTEVAVKGLLKHYPS--LR----------EAEFMTVKTGDVLDLGGKT 141 (404)
T ss_dssp EEECSCCSHHHHTTHHHHHHHS----TTCCEEECHHHHHHHHHHCGG--GG----------GSCEEECCTTCEEECSSCE
T ss_pred EEEeCCCCCcccchHHHHHHHC----CCCEEEECHHHHHHHHHHhcc--cc----------cCCceEcCCCCEEEECCEE
Confidence 3478999999999999886421 257899999998888765331 00 11245554 4788999999
Q ss_pred EEEEEec--CCCCceeeeEEEc--cEEEeCCCC
Q 028873 84 ITPLPVW--HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
++.++++ |.. .+++|.++ +++|+||+-
T Consensus 142 i~~~~~p~gH~~--~~~~~~~~~~~~lf~GD~~ 172 (404)
T 2ohh_A 142 LTFLETPLLHWP--DSMFTLLDEDGILFSNDAF 172 (404)
T ss_dssp EEEEECTTSSST--TCEEEEEETTTEEECTTTT
T ss_pred EEEEeCCCCCCC--CceEEEECCCcEEEecCcc
Confidence 9999998 877 78889885 899999985
No 30
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=98.78 E-value=7.7e-09 Score=82.89 Aligned_cols=141 Identities=9% Similarity=0.035 Sum_probs=84.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee-eecCCC---CCCCcccceEEEeeC--CCceE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL-VDTSGI---IPGAAVSELQFNIID--EEPFT 78 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~--~~~~~ 78 (202)
.-++||.|.||++|++.| ...+||+++.+.+.+.+..... ....+. +.....+..++..++ ++.++
T Consensus 106 ~VilTH~H~DH~gg~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (276)
T 2r2d_A 106 TVVLSHLHNDHAGCVEYF--------GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERE 177 (276)
T ss_dssp EEECSCCSTTTSTTGGGC--------SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEE
T ss_pred EEEecCcccccCCChhhC--------CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeE
Confidence 347899999999999876 2578999998877665421100 000000 000000023355665 46788
Q ss_pred eC-CEEEEEE-EecCCCCceeeeEEEc-----cEEEeCCCCCCCcchhhh-ccCCCEEEEeccCCCCCCCCCCCHHHHHH
Q 028873 79 VQ-DLKITPL-PVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPF-LQDCEILIMDALRPDRSSSTHFGLPRALE 150 (202)
Q Consensus 79 ~~-~~~I~~~-~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~~~~~~~-~~~~DlLi~e~~~~~~~~~~H~~~~ea~~ 150 (202)
++ +++|.+. | .|.. .+++|+++ +++|+||+.+.++ .+.. ...++ +.......|.+.+.+.+
T Consensus 178 l~~~~~v~~~~p-gHt~--g~~~~~~~~~~~~~vl~~GD~~~~~~-~~~~~~~~~~-------~~~d~~~~~~sl~~l~~ 246 (276)
T 2r2d_A 178 LAPGVNLLNFGT-GHAS--GMLGLAVRLEKQPGFLLVSDACYTAT-NYGPPARRAG-------VLHDTIGYDRTVSHIRQ 246 (276)
T ss_dssp EETTEEEEEEES-SSSS--SEEEEEEECSSSCEEEEEETTSCCHH-HHSSSCCCCS-------SCSCHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCC-CCCc--eeEEEEEEcCCCceEEEEechhhhHH-HhcccCCCCc-------cccCHHHHHHHHHHHHH
Confidence 85 8999888 7 8987 89999994 7999999986642 2221 11111 11111234556666666
Q ss_pred HHHHcCCCEEEEecC
Q 028873 151 EVRKIQPKRTLFIGM 165 (202)
Q Consensus 151 ~~~~~~~k~lvltHl 165 (202)
++.+.+ .+++.+|-
T Consensus 247 l~~~~~-~~v~~~H~ 260 (276)
T 2r2d_A 247 YAESRS-LTVLFGHD 260 (276)
T ss_dssp HHHHTT-CEEEESSC
T ss_pred HHhcCC-CEEEeCCC
Confidence 655444 49999993
No 31
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=98.74 E-value=5.2e-08 Score=85.75 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=90.9
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHh-------------cCceeeecCCCCCCCcccceEEE-
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK-------------THYYLVDTSGIIPGAAVSELQFN- 70 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~- 70 (202)
.-+|||.|.||++|++.|+... ...+||+++...+.+.. ....+.. . .+...
T Consensus 80 ~vilTH~H~DHiggl~~l~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----g~~~~~ 145 (547)
T 2bib_A 80 FILVTHTHSDHIGNVDELLSTY----PVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATE-----T-----GVSVIQ 145 (547)
T ss_dssp CEECCCSCHHHHTTHHHHHHHS----CBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHH-----T-----TCEEEC
T ss_pred EEEEcCCCccccCCHHHHHHhC----CccEEEECcccccccCChHHHHhHHHHHHHHHHHHHH-----h-----CCeEEE
Confidence 3579999999999999886432 12257776543221100 0000000 0 11222
Q ss_pred -eeCC-CceEeCCEEEEEEEe---cCCC---------CceeeeEEEc----cEEEeCCCCCCCcc---hhhhccCCCEEE
Q 028873 71 -IIDE-EPFTVQDLKITPLPV---WHGA---------GYRSLGFRFG----NICYISDVSEIPEE---TYPFLQDCEILI 129 (202)
Q Consensus 71 -~~~~-~~~~~~~~~I~~~~v---~H~~---------~~~~~gy~i~----~~~y~~Dt~~~~~~---~~~~~~~~DlLi 129 (202)
.+.+ +.+++++++|++++. .|+. +..+++|+|+ +++|+||+...++. +.+....+|+|+
T Consensus 146 ~~~~~g~~~~~g~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~~~~~iLftGD~~~~~~~e~~l~~~~~~~DvLk 225 (547)
T 2bib_A 146 NITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMK 225 (547)
T ss_dssp SCCTTTTEEEETTEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCCSTTSHHHHHHHHHCCCSEEE
T ss_pred eecCCCceEecCCeeEEEecCccccCccccccccCCCCCCcEEEEEEECCEEEEecCCccchhhhhhhhcccccceeEEE
Confidence 2233 678999999999973 3321 1478999997 89999999865321 112234799998
Q ss_pred EeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCC---CChHHHHHHHhh
Q 028873 130 MDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHL---MDHEKVNEELLK 180 (202)
Q Consensus 130 ~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~---~~~~~~~~~~~~ 180 (202)
+ +|.|-+..+...+++++++++.++++.=... .+.+++.+.+++
T Consensus 226 v-------~HHG~S~~s~s~~fl~~v~P~~aiiS~g~~n~~~hP~~evl~~l~~ 272 (547)
T 2bib_A 226 F-------NHHHDTNKSNTKDFIKNLSPSLIVQTSDSLPWKNGVDSEYVNWLKE 272 (547)
T ss_dssp C-------TTTTBCSSSSCHHHHHHHCCSEEEESBSSCSBSSSBCHHHHHHHHT
T ss_pred e-------ccccCcccCChHHHHHhcCCcEEEEcCCcccccCCCCHHHHHHHHh
Confidence 5 2322011224467888899999998774321 134566666664
No 32
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=98.68 E-value=5.1e-08 Score=75.40 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=65.6
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.|+. ...+||+++.+.+.+++.-. + ...+.++ ++.+.+++.+
T Consensus 71 ~ii~TH~H~DH~gg~~~l~~------~~~~v~~~~~~~~~~~~~~~---------~------~~~~~~~~g~~~~~g~~~ 129 (219)
T 3l6n_A 71 AVFATHSHDDRAGDLSFFNN------KGIKTYATAKTNEFLKKDGK---------A------TSTEIIKTGKPYRIGGEE 129 (219)
T ss_dssp EEECSSSSTTTTCCTHHHHH------TTCEEEECHHHHHHHHHTTC---------C------CCSEECCTTSEEEETTEE
T ss_pred EEEecCCCcccccCHHHHHh------CCCEEEEcHHHHHHHHhcCC---------C------CCcEecCCCCEEEECCEE
Confidence 34799999999999998863 26899999999888776311 0 0123343 4788999999
Q ss_pred EEEEEe--cCCCCceeeeEEEc--cEEEeCCCCC
Q 028873 84 ITPLPV--WHGAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 84 I~~~~v--~H~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
|+.++. .|.. .+++|.++ +++|+||+-.
T Consensus 130 i~~~~~~pgHt~--g~~~~~~~~~~~lf~GD~~~ 161 (219)
T 3l6n_A 130 FVVDFLGEGHTA--DNVVVWFPKYNVLDGGCLVK 161 (219)
T ss_dssp EEEECCCCSSSS--SCCEEEETTTTEEEEETTSC
T ss_pred EEEEeCCCCCCC--CCEEEEECCCCEEEECCeee
Confidence 999973 6877 78889996 8999999864
No 33
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=98.61 E-value=3.7e-07 Score=73.73 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=85.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
+-++||.|.||++|++.+... ...+||+++.+.+.+++.........+.......+....+.++ ++.+++|+.+
T Consensus 99 ~ii~TH~H~DH~gg~~~l~~~-----~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 173 (303)
T 4ax1_B 99 AIVFSHEHFDHAGSLAELQKA-----TGAPVYARAPAIDTLKRGLPDRTDPNFEVAEPVAPVANIVTLADDGVVSVGPLA 173 (303)
T ss_dssp EEECSCSSHHHHTTHHHHHHH-----HCCCEEEEHHHHHHHHHTSCCTTSTTGGGCCCCCCCSCEEEECTTCEEEETTEE
T ss_pred EEEcCCCCccccCCHHHHHhh-----cCCEEEEcHHHHHHHhccccCccccccccccCcCCCCCcEEeCCCCEEEECCeE
Confidence 457999999999999988643 2578999999988887642100000000000001112245554 4789999999
Q ss_pred EEEEEec-CCCCceeeeEEEcc-------EEEeCCCCCCCcchhhhccCCCEEEEeccCCCCC--CCCCCCHHHHHHHHH
Q 028873 84 ITPLPVW-HGAGYRSLGFRFGN-------ICYISDVSEIPEETYPFLQDCEILIMDALRPDRS--SSTHFGLPRALEEVR 153 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~~-------~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~--~~~H~~~~ea~~~~~ 153 (202)
|+.++++ |.. .+++|.++. .++.+|+-... . .+.+ .+.... ...=..+.++++.++
T Consensus 174 v~~~~~pgHt~--g~~~~~~~~~~~~~~~~~l~gD~l~~~-~-------~~~~----~~~~~~~~~~~~~~~~~sl~~l~ 239 (303)
T 4ax1_B 174 LTAVASPGHTP--GGTSWTWRSCEGDDCRQMVYADSLTAI-S-------DDVF----RYSDDAAHPGYLAAFRNTLARVA 239 (303)
T ss_dssp EEEEECCSSST--TCEEEEEEEEETTEEEEEEECCCCCCC-C-------CSSC----CTTCGGGSTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCc--cceEEEEEecCCCceeEEEEeCCcccc-C-------cCcc----cCCCCCCCccHHHHHHHHHHHHh
Confidence 9999888 666 788888862 35558885321 1 0000 011000 000123455666667
Q ss_pred HcCCCEEEEecCCCC
Q 028873 154 KIQPKRTLFIGMMHL 168 (202)
Q Consensus 154 ~~~~k~lvltHl~~~ 168 (202)
..+++.++..|-...
T Consensus 240 ~l~~~~vv~~Hg~~~ 254 (303)
T 4ax1_B 240 ALDCDILVTPHPSAS 254 (303)
T ss_dssp TSCCSEEECSSGGGG
T ss_pred cCCCCEEEcCCcchh
Confidence 778899999897753
No 34
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=98.60 E-value=5.9e-08 Score=78.31 Aligned_cols=98 Identities=8% Similarity=0.010 Sum_probs=66.7
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-++||.|.||++|++.+... ...+||+++.+.+.++....+........+. .+....+.+. ++.+++++.+|
T Consensus 97 ii~TH~H~DH~gg~~~l~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~g~~~i 169 (294)
T 3m8t_A 97 ILNTHAHLDHTGGFAEIKKE-----TGAQLVAGERDKPLLEGGYYPGDEKNEDLAF--PAVKVDRAVKEGDRVTLGDTTL 169 (294)
T ss_dssp EECSCCCHHHHTTHHHHHHH-----HCCEEEEEGGGHHHHHHTCBTTBTTCGGGCC--CCCCCSEEECTTCEEEETTEEE
T ss_pred EEECCCCccccccHHHHhhc-----cCCEEEEChHHHHHHhcccccCccccccCCC--CCCCCceEeCCCCEEEeCCEEE
Confidence 47999999999999988643 2578999999988877642211000000000 0000113343 47899999999
Q ss_pred EEEEec-CCCCceeeeEEEc--------cEEEeCCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFG--------NICYISDVS 112 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~--------~~~y~~Dt~ 112 (202)
+.++++ |.. .+++|+++ +++|+||+.
T Consensus 170 ~~~~~pgHt~--g~~~~~~~~~~~~~~~~~lf~GD~~ 204 (294)
T 3m8t_A 170 TAHATPGHSP--GCTSWEMTVKDGKEDREVLFFCSGT 204 (294)
T ss_dssp EEEECCSSST--TCEEEEEEEEETTEEEEEEECCCCC
T ss_pred EEEeCCCCCc--cCEEEEEEccCCCccceEEEEcCcc
Confidence 999988 776 78999885 499999996
No 35
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=98.58 E-value=2.8e-08 Score=76.44 Aligned_cols=100 Identities=9% Similarity=-0.089 Sum_probs=65.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-++||.|.||++|++.+.... +.+||+++.+.+.+.+....... .+..+... +....+.++ ++.+++++.+|
T Consensus 52 ii~TH~H~DH~gg~~~l~~~~-----~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~g~~~~~g~~~i 124 (210)
T 2xf4_A 52 ILLTHGHLDHVGAASELAQHY-----GVPVIGPEKEDEFWLQGLPAQSR-MFGLDECQ-PLTPDRWLNDGDRVSVGNVTL 124 (210)
T ss_dssp EECSCSCHHHHTTHHHHHHHH-----TCCEECCCGGGHHHHHTHHHHHH-HTTCCCCC-CCCCSBCCCTTCEEEETTEEE
T ss_pred EEECCCChhhhcCHHHHHHHc-----CCcEEEecchHHHHhccchhhhh-hcCCcccC-CCCCceEECCCCEEEECCeEE
Confidence 478999999999999886432 47899998776655442110000 00001000 000122333 46789999999
Q ss_pred EEEEec-CCCCceeeeEEEc--cEEEeCCCCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFG--NICYISDVSEI 114 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~~~ 114 (202)
+.++++ |.. .+++|.++ +++|+||+.+.
T Consensus 125 ~~~~~pgHt~--g~~~~~~~~~~~lf~GD~~~~ 155 (210)
T 2xf4_A 125 QVLHCPGHTP--GHVVFFDEQSQLLISGDVIFK 155 (210)
T ss_dssp EEEECCSSST--TCEEEEETTTTEEEEETSEET
T ss_pred EEEECCCCCC--CcEEEEeCCCCEEEECCEecc
Confidence 999988 665 78999996 89999999643
No 36
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=98.57 E-value=1.3e-07 Score=75.22 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=66.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCce--eeecCC--CCCCCcccceEEEeeC-CCceEe
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYY--LVDTSG--IIPGAAVSELQFNIID-EEPFTV 79 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 79 (202)
.-++||.|.||++|++.+... ...+||+++.+.+.+++.... .+.... ..+. ......+. ++.+.+
T Consensus 66 ~IilTH~H~DH~gg~~~l~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~ 136 (263)
T 1k07_A 66 ILLISHAHFDHAAGSELIKQQ-----TKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQ----STVDKVLHDGERVEL 136 (263)
T ss_dssp EEECSSSSHHHHTTHHHHHHH-----HCCEEEEEHHHHHHHHTTTTTCTTTTTCGGGCCCC----CCCSEEECTTCEEEE
T ss_pred EEEeCCCCccccccHHHHHHh-----cCCEEEEcHHHHHHHhcccccccccCccccccCCC----CCcceEeCCCCEEEE
Confidence 347899999999999988643 257899999998887653211 000000 0000 01123343 478899
Q ss_pred CCEEEEEEEec-CCCCceeeeEEEc--------cEEEeCCCCC
Q 028873 80 QDLKITPLPVW-HGAGYRSLGFRFG--------NICYISDVSE 113 (202)
Q Consensus 80 ~~~~I~~~~v~-H~~~~~~~gy~i~--------~~~y~~Dt~~ 113 (202)
++.+|+.++++ |.. .+++|.++ +++|+||+..
T Consensus 137 g~~~i~~i~~pGHt~--g~~~~~~~~~~~~~~~~~lf~GD~~~ 177 (263)
T 1k07_A 137 GGTVLTAHLTPGHTR--GCTTWTMKLKDHGKQYQAVIIGSIGV 177 (263)
T ss_dssp TTEEEEEEECCSSST--TCEEEEEEEEETTEEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCC--CcEEEEEecccCCceeEEEEECCccc
Confidence 99999999987 776 78888886 4999999965
No 37
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=98.54 E-value=1.2e-07 Score=74.98 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=64.3
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCEEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKI 84 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 84 (202)
.-++||.|.||++|++.|. ..+||+++.+.+.+.....+..... .+..++...++.....+++++
T Consensus 103 ~VilTH~H~DH~gg~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~ 167 (254)
T 3dha_A 103 YIISSHLHFDHAGGNGAFT--------NTPIIVQRTEYEAALHREEYMKECI-------LPHLNYKIIEGDYEVVPGVQL 167 (254)
T ss_dssp EEECSCCSHHHHTTGGGCS--------SSCEEEEHHHHHHHHHCTTSCGGGS-------CTTSCEEEECSSEEEETTEEE
T ss_pred EEEcCCChhhcCCChHHCC--------CCEEEECHHHHHHhhcccccccccc-------CcccceEEecCCccccCCEEE
Confidence 3478999999999998763 4789999999888765433321100 112335555555566778777
Q ss_pred EEEEecCCCCceeeeEEEc-----cEEEeCCCCCCC
Q 028873 85 TPLPVWHGAGYRSLGFRFG-----NICYISDVSEIP 115 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~ 115 (202)
...| -|.. .+++|.++ +++|+||+.+..
T Consensus 168 ~~~p-GHt~--g~~~~~~~~~~~~~vl~~GD~~~~~ 200 (254)
T 3dha_A 168 LYTP-GHSP--GHQSLFIETEQSGSVLLTIDASYTK 200 (254)
T ss_dssp EECC-SSST--TCEEEEEEETTTEEEEEEETTCSSH
T ss_pred EECC-CCCC--CCEEEEEEeCCCCEEEEEecccchh
Confidence 6555 4776 78888886 599999998654
No 38
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=98.46 E-value=3.4e-07 Score=73.04 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=64.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeC-CEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLK 83 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 83 (202)
-++||.|.||++|++.++.. ....+||+++.+.+.+++.++. + ....+.++ ++.++++ +.+
T Consensus 83 IilTH~H~DH~gg~~~l~~~----~~~~~v~~~~~~~~~l~~~~~~--------~-----~~~~~~~~~g~~l~lg~~~~ 145 (262)
T 3hnn_A 83 VILGHFSPNRIPTFKALLEL----APQITFVCSLPAAGDLRAAFPD--------D-----NLNILPMRGKETLDLGKGHV 145 (262)
T ss_dssp EECSSCCGGGHHHHHHHHHH----CTTCEEEECHHHHHHHHHHSSS--------S-----CCEEEECCSSCEEECSTTCE
T ss_pred EEECCCCcchhchHHHHHHH----CCCCEEEECHHHHHHHHHHhCC--------C-----CCceEEeCCCCEEEcCCCcE
Confidence 46899999999999988632 1358999999998887764321 0 12245554 4789998 888
Q ss_pred EEEEEec--CCCCceeeeEEEc--cEEEeCCC
Q 028873 84 ITPLPVW--HGAGYRSLGFRFG--NICYISDV 111 (202)
Q Consensus 84 I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt 111 (202)
++.++++ |.. .++.+.+. +++|+||+
T Consensus 146 ~~~i~tpg~Ht~--g~~~~~~~~~~~lfsGD~ 175 (262)
T 3hnn_A 146 LKFLPIPSPRWP--AGLCTYDVQTQILYTDKI 175 (262)
T ss_dssp EEEEECCCSSCT--TCEEEEETTTTEEEEETT
T ss_pred EEEEECCCCCCC--CeeEEEeCCCCEEEEeec
Confidence 8888777 555 56666665 89999999
No 39
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=98.46 E-value=2.2e-07 Score=74.75 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEeec
Q 028873 144 GLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 201 (202)
Q Consensus 144 ~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l~ 201 (202)
..+++++++++.++++++++|++....+..+++++. .++..++||++++++
T Consensus 216 ~l~~tl~~l~~~~~~~i~~~HCTg~~a~~~L~~~lp-------~~v~~~~~G~~iei~ 266 (267)
T 3h3e_A 216 EIEKIVKAFNELGVETVVPCHCTGERAVDIFKREFL-------GKIMDCYAGLKLEVS 266 (267)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHCS-------SEECCCCTTCEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHCC-------CCEEEecCceEEEeC
Confidence 357888889999999999999998776666655544 379999999999874
No 40
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=98.46 E-value=2.5e-07 Score=75.24 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=64.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHh---cCceeeecCCCCCCCcccceEEEee-CCCceEeC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK---THYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQ 80 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (202)
.-++||.|.||++|++.|.... ..+||+++.+.+.++. .+.. ...+ +.. ...+. +.+ +++.+.+|
T Consensus 67 ~Il~TH~H~DH~gg~~~l~~~~-----~a~i~~~~~~~~~~~~~~~~~~~--~~~~--~~~-~~~~~-~~~~~g~~l~~g 135 (298)
T 4efz_A 67 WLLETHVHADHLSAAPYLKTRV-----GGEIAIGRHVTRVQDVFGKLFNA--GPAF--AHD-GSQFD-RLLDDGDTLALG 135 (298)
T ss_dssp EEECSSCCSSSBCCHHHHHHHH-----CCEEEEETTHHHHHHHHHHHTTC--CTTS--CSS-STTSS-EEECTTCEEEET
T ss_pred EEEECCCchhhhhhHHHHHHHh-----CCcEEEChhHHHHHHHHHHhcCC--cccc--ccc-ccCCC-EEeCCCCEEEEC
Confidence 3468999999999999987532 4678888766554332 2211 0000 000 00122 334 35789999
Q ss_pred CEEEEEEEec-CCCCceeeeEEEcc----------EEEeCCCCCC
Q 028873 81 DLKITPLPVW-HGAGYRSLGFRFGN----------ICYISDVSEI 114 (202)
Q Consensus 81 ~~~I~~~~v~-H~~~~~~~gy~i~~----------~~y~~Dt~~~ 114 (202)
+.+|+.+.++ |.. .+++|.++. ++|+||+-..
T Consensus 136 ~~~i~vi~tPGHT~--g~~~~~~~~~~~~~~~~~~~lftGD~l~~ 178 (298)
T 4efz_A 136 ALSIRAMHTPGHTP--ACMTYVVTEAHAAHDARDAAAFVGDTLFM 178 (298)
T ss_dssp TEEEEEEECCSSST--TCEEEEEEETTCCGGGCBCEEECCSSBCC
T ss_pred CEEEEEEECCCCCc--ccEEEEECCCcccccCCceEEEEcCcccc
Confidence 9999999998 766 799999982 9999999644
No 41
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=98.43 E-value=6.9e-07 Score=71.28 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=64.0
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCce--eeecCCCCCCCcccceEEEeeC-CCceEeCC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYY--LVDTSGIIPGAAVSELQFNIID-EEPFTVQD 81 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (202)
.-++||.|.||++|++.|... ..++||+++.+.+.+++.... .+... .. ..+....+.++ ++.+++++
T Consensus 79 ~IilTH~H~DH~gg~~~l~~~-----~~~~v~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~~~~g~~~~~g~ 149 (269)
T 1sml_A 79 LILLSHAHADHAGPVAELKRR-----TGAKVAANAESAVLLARGGSDDLHFGDG---IT-YPPANADRIVMDGEVITVGG 149 (269)
T ss_dssp EEECSCCSHHHHTTHHHHHHH-----SSCEEEECHHHHHHHHTTTCSBTTTBTS---SC-CCCCCCSEECCTTCEEEETT
T ss_pred EEEeCCCCccccCCHHHHHHh-----cCCeEEECHHHHHHHhcCCccccccccc---cC-CCCCCCCeEeCCCCEEEECC
Confidence 347899999999999988643 257899999998887653211 00000 00 00000123343 47789999
Q ss_pred EEEEEEEec-CCCCceeeeEEEcc-------EEEeCCCCC
Q 028873 82 LKITPLPVW-HGAGYRSLGFRFGN-------ICYISDVSE 113 (202)
Q Consensus 82 ~~I~~~~v~-H~~~~~~~gy~i~~-------~~y~~Dt~~ 113 (202)
++|+.++++ |.. .+++|+++. .++.+|+-.
T Consensus 150 ~~i~~~~~pGHt~--g~~~~~~~~~~~~~~~~l~~gD~l~ 187 (269)
T 1sml_A 150 IVFTAHFMAGHTP--GSTAWTWTDTRNGKPVRIAYADSLS 187 (269)
T ss_dssp EEEEEEECCSSST--TCEEEEEEEEETTEEEEEEECCCCC
T ss_pred EEEEEEECCCCCc--ccEEEEEecccCCceeEEEEecccc
Confidence 999999998 766 788998741 344478853
No 42
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=98.42 E-value=6.8e-07 Score=69.35 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=63.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.+.. ...+||+++.+.+.+++... . .+ .+.+. ++.+.+++.+
T Consensus 67 ~vi~TH~H~DH~gg~~~~~~------~~~~v~~~~~~~~~~~~~~~---~---------~~---~~~~~~g~~~~~g~~~ 125 (223)
T 1m2x_A 67 MNIATHSHDDRAGGLEYFGK------IGAKTYSTKMTDSILAKENK---P---------RA---QYTFDNNKSFKVGKSE 125 (223)
T ss_dssp EEECSSSSTTTTTTHHHHHH------TTCEEEEEHHHHHHHHHTTC---C---------CC---SEEESSCEEEEETTEE
T ss_pred EEEeccCCccccCchhhHhh------CCCeEEEcHHHHHHHHhcCc---c---------CC---ceecCCCceEEECCEE
Confidence 35789999999999988753 25789999999887765321 0 00 12333 4678899999
Q ss_pred EEEEE-e-cCCCCceeeeEEEc--cEEEeCCCC
Q 028873 84 ITPLP-V-WHGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 84 I~~~~-v-~H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
++.+. . -|.. .+++|.++ +++|+||+-
T Consensus 126 i~~~~~~pgHt~--~~~~~~~~~~~~lf~GD~~ 156 (223)
T 1m2x_A 126 FQVYYPGKGHTA--DNVVVWFPKEKVLVGGCII 156 (223)
T ss_dssp EEEECCCSSSSS--SCCEEEETTTTEEEEETTS
T ss_pred EEEEecCCCCCC--CCEEEEECCCCEEEEeccc
Confidence 99984 5 4776 78999996 899999974
No 43
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=98.39 E-value=2.6e-07 Score=73.66 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=60.7
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.|.... +.+||+++...+.+ ++ . ...+ +++.+++|+.+
T Consensus 49 ~Il~TH~H~DH~gg~~~l~~~~-----~~~v~~~~~~~~~~--------------~~-----~-~~~~~~g~~~~lg~~~ 103 (254)
T 1xm8_A 49 YILNTHHHYDHTGGNLELKDRY-----GAKVIGSAMDKDRI--------------PG-----I-DMALKDGDKWMFAGHE 103 (254)
T ss_dssp EEECSSCCHHHHTTHHHHHHHH-----CCEEEEEGGGGGGS--------------TT-----E-EEEECTTCEEEETTEE
T ss_pred EEEECCCCCcccccHHHHHHHc-----CCeEEEchhhhhcC--------------CC-----C-ceeeCCCCEEEECCEE
Confidence 3578999999999999886432 47899987653321 11 1 1233 34788999999
Q ss_pred EEEEEec-CCCCceeeeEEEc--cEEEeCCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
++.++++ |.. .+++|.++ +++|+||+-.
T Consensus 104 ~~vi~tPGHt~--g~~~~~~~~~~~lftGD~l~ 134 (254)
T 1xm8_A 104 VHVMDTPGHTK--GHISLYFPGSRAIFTGDTMF 134 (254)
T ss_dssp EEEEECCSSSS--SCEEEEEGGGTEEEEETTEE
T ss_pred EEEEECCCCCC--CcEEEEECCCCEEEEcCccc
Confidence 9999886 766 78999996 8999999953
No 44
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=98.37 E-value=9.5e-07 Score=74.84 Aligned_cols=89 Identities=15% Similarity=0.039 Sum_probs=65.2
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.|... -...+||+++.+.+.+++.+.. +. .....++ ++.+++++.+
T Consensus 80 ~ii~TH~H~DH~gg~~~l~~~----~~~~~v~~~~~~~~~~~~~~~~--------~~-----~~~~~~~~g~~~~lg~~~ 142 (414)
T 2q9u_A 80 YVVMNHAEGDHASSLKDHYHK----FTNATFVCTKKCQEHLKILYGM--------EK-----ATWLIVDDKYTLKIGKRT 142 (414)
T ss_dssp EEECSCCSGGGTTTHHHHGGG----STTCEEEECHHHHHHHHHHHCC--------TT-----CCEEECCTTCCEECSSCE
T ss_pred EEEeCCCCcchhcCHHHHHHH----CCCCEEEECHHHHHHHHHHhCC--------CC-----CeeEEeCCCCEEEECCeE
Confidence 347899999999999988632 1358899999998877653221 11 1234454 4788999999
Q ss_pred EEEEEec--CCCCceeeeEEEc--cEEEeCCCC
Q 028873 84 ITPLPVW--HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
++.++++ |.. .++.+..+ +++|+||.-
T Consensus 143 ~~~~~~p~gHt~--~~~~~~~~~~~~lf~GD~~ 173 (414)
T 2q9u_A 143 LKFIPVPLLHWP--DSTFTYCPEDKILFSNDGF 173 (414)
T ss_dssp EEEEECTTSSST--TCEEEEETTTTEEEEETTT
T ss_pred EEEEeCCCCCCC--CceEEEECCCeEEEEcccc
Confidence 9999988 866 56766664 899999974
No 45
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.35 E-value=1.4e-07 Score=74.21 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=62.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-++||.|.||++|++.++.. ..+||+++.+.+.+++......... .+. .+ ...+. ++.++++++++
T Consensus 89 vi~TH~H~DH~gg~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~~~~--~~~--~~---~~~~~~g~~~~~g~~~v 155 (243)
T 4hl2_A 89 AVVTHAHQDKMGGMDALHAA------GIATYANALSNQLAPQEGMVAAQHS--LTF--AA---NGWVEPATAPNFGPLKV 155 (243)
T ss_dssp EEECSSSHHHHTTHHHHHHT------TCEEEEEHHHHHHGGGTTCCCCSEE--ECB--CT---TSBBCGGGSTTCTTEEE
T ss_pred EEECCCCccccCCHHHHHhC------CCeEEECHHHHHHHhcccccccccc--ccc--cc---ceEecCCCeEEECCEEE
Confidence 47899999999999988532 6889999999887765321100000 000 00 11222 36778899999
Q ss_pred EEEEec-CCCCceeeeEEEc--cEEEeCCCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
.++.+ |.. .+++|.++ +++|+||+-.
T Consensus 156 -~~~~pGHt~--g~~~~~~~~~~~lf~GD~~~ 184 (243)
T 4hl2_A 156 -FYPGPGHTS--DNITVGIDGTDIAFGGCLIK 184 (243)
T ss_dssp -ECCCSSSST--TCCEEEETTTTEEECTTTCC
T ss_pred -EeCCCCCCc--CCEEEEEcCCCEEEEcceee
Confidence 54444 877 78999996 8999999964
No 46
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=98.33 E-value=5.9e-07 Score=71.77 Aligned_cols=140 Identities=12% Similarity=0.045 Sum_probs=78.2
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCc-----eeeecCC-------------CCCCCcccc
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY-----YLVDTSG-------------IIPGAAVSE 66 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~-----~~~~~~~-------------~~~~~~~~~ 66 (202)
.-++||+|.||++|++.|. ..+||+++...+.+.+... |+. ..+ .......+.
T Consensus 91 ~VilTH~H~DH~gg~~~~~--------~a~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (274)
T 3aj3_A 91 VVVNSHFHFDHCGGNKYFP--------HAKKICHRSEVPQACNPQPFEHLGYSD-LSFSAEAAEARGATAQLLEGTTRAN 161 (274)
T ss_dssp EEECSCCSGGGTTTGGGCT--------TSEEEEETTHHHHHHSCCGGGTTTTCC-CTTCHHHHHHHTCGGGCCTTCCSTT
T ss_pred EEEecCcCcccCCchhhCC--------CCEEEECHHHHHHHhCcCCccccccCh-hhhccccccccccccccccccccCC
Confidence 3579999999999998761 3578888887776654221 110 000 000000011
Q ss_pred eEEEeeCCCceEeCC-EEEEEEEecCCCCceeeeEEEc-----cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCC
Q 028873 67 LQFNIIDEEPFTVQD-LKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSS 140 (202)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~I~~~~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~ 140 (202)
.++..++ +.+++++ +++...| -|.. .+++|.++ +++|+||+.+..+ .+....-. . +......
T Consensus 162 ~~~~~~~-~~~~l~g~~~v~~~p-GHt~--g~~~~~~~~~~~~~~lf~GD~~~~~~-~~~~~~~~------~-~~~d~~~ 229 (274)
T 3aj3_A 162 STFEGID-GDVDLARGVKLISTP-GHSI--GHYSLLVEFPRRKPILFTIDAAYTQK-SLETLCQA------A-FHIDPVA 229 (274)
T ss_dssp SCEEEEC-SSEEEETTEEEEECT-TSST--TCEEEEECCSSSCCEEEEETTCSSHH-HHHHTCCC------S-CCSCHHH
T ss_pred CCceEcC-CccccCCEEEEEECC-CCCc--eeeEEEEECCCCCEEEEEechhhhHH-HhcCCCCC------c-eecCHHH
Confidence 2344554 3577787 5555444 2877 78999994 7999999986642 22211000 0 1100112
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEecCC
Q 028873 141 THFGLPRALEEVRKIQPKRTLFIGMM 166 (202)
Q Consensus 141 ~H~~~~ea~~~~~~~~~k~lvltHl~ 166 (202)
.+.+.+.+.+++.+.++ +++..|-.
T Consensus 230 ~~~sl~~l~~l~~~~~~-~i~pgH~~ 254 (274)
T 3aj3_A 230 GVNSMRKVKKLAEDHGA-ELMYSHDM 254 (274)
T ss_dssp HHHHHHHHHHHHHHHTC-EEEESSCH
T ss_pred HHHHHHHHHHHHhcCCC-EEEecCCH
Confidence 34455555555555555 89988843
No 47
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=98.30 E-value=5.6e-06 Score=66.69 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=62.1
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-++||.|.||++|++.|.... .....+++|+++.... ..... .. ....++.+. ++.+++++.++
T Consensus 74 Ii~TH~H~DH~gg~~~l~~~~-~~~~~~~v~~~~~~~~-----~~~~~------~~---~~~~~~~~~~g~~~~~gg~~~ 138 (289)
T 4ad9_A 74 IVVTHWHRDHSGGIGDICKSI-NNDTTYCIKKLPRNPQ-----REEII------GN---GEQQYVYLKDGDVIKTEGATL 138 (289)
T ss_dssp EECSCSSHHHHTTHHHHHHHS-CCSSCCCEEECCCSSC-----CCCCB------TT---TTBCEEECCTTCEEEETTEEE
T ss_pred EEEcCCCCcccccHHHHHHhh-ccCCCceEEecCCCcc-----hhhhc------cC---CCCceEEcCCCCEEEeCCeEE
Confidence 478999999999999987542 1234678888653310 10000 00 112355564 47899999999
Q ss_pred EEEEec-CCCCceeeeEEEc--cEEEeCCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
+.++++ |.. .+++|.++ +++|+||+-
T Consensus 139 ~~~~~pGHt~--~~~~~~~~~~~~lftGD~~ 167 (289)
T 4ad9_A 139 RVLYTPGHTD--DHMALLLEEENAIFSGDCI 167 (289)
T ss_dssp EEEECCSSST--TCEEEEETTTTEEEEETSS
T ss_pred EEEECCCCCC--CCEEEEEcCCCEEEEeccc
Confidence 999985 665 78999997 899999984
No 48
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=98.29 E-value=9.8e-07 Score=68.92 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=82.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.+.. ...+||+++.+.+.+++. .. . . + ...++ ++.+.+++.+
T Consensus 77 ~ii~TH~H~DH~gg~~~~~~------~~~~v~~~~~~~~~~~~~-~~--~------~---~---~~~~~~g~~~~~g~~~ 135 (232)
T 1a7t_A 77 TFIPNHWHGDCIGGLGYLQR------KGVQSYANQMTIDLAKEK-GL--P------V---P---EHGFTDSLTVSLDGMP 135 (232)
T ss_dssp EEECSSSSHHHHTTHHHHHH------TTCEEEEEHHHHHHHHHH-TC--C------C---C---SEEESSEEEEEETTEE
T ss_pred EEEeCCCCccccCCHHHHHh------CCCeEEEcHHHHHHHHhc-CC--C------C---C---ceecCCCCEEEECCeE
Confidence 34789999999999988753 257899999998877652 10 0 0 0 12333 3678889999
Q ss_pred EEEEE-e-cCCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHc--CC
Q 028873 84 ITPLP-V-WHGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI--QP 157 (202)
Q Consensus 84 I~~~~-v-~H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~--~~ 157 (202)
++.+. . -|.. .+++|.++ +++|+||+-.... . .++.. . . ......+.++++-+.+. ..
T Consensus 136 i~~~~~~pgHt~--g~~~~~~~~~~~lf~GD~~~~~~--~---~~~~~-----~-~---~~~~~~~~~sl~~l~~~~~~~ 199 (232)
T 1a7t_A 136 LQCYYLGGGHAT--DNIVVWLPTENILFGGCMLKDNQ--T---TSIGN-----I-S---DADVTAWPKTLDKVKAKFPSA 199 (232)
T ss_dssp EEEECCCCSSST--TCCEEEETTTTEEEEETTSCCTT--C---CSCCC-----C-T---TCCTTTHHHHHHHHHHHCTTC
T ss_pred EEEEeCCCCCCC--CCEEEEECCCCEEEEcCcccccC--C---ccccc-----C-C---CCCHHHHHHHHHHHHhhCCCC
Confidence 99995 5 4776 78899996 8999999965311 0 01100 0 1 11223455666655554 67
Q ss_pred CEEEEecCCCC
Q 028873 158 KRTLFIGMMHL 168 (202)
Q Consensus 158 k~lvltHl~~~ 168 (202)
+.++-.|-.+.
T Consensus 200 ~~v~pgHg~~~ 210 (232)
T 1a7t_A 200 RYVVPGHGNYG 210 (232)
T ss_dssp SEEEESSSCCB
T ss_pred CEEECCCCCcc
Confidence 78888886543
No 49
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=98.29 E-value=2e-06 Score=69.84 Aligned_cols=99 Identities=11% Similarity=-0.030 Sum_probs=64.5
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcC------------ceeeecCCCCCCCcccceEEEeeC
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTH------------YYLVDTSGIIPGAAVSELQFNIID 73 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (202)
-++||.|.||++|++.+... ....+||+++.+.+.+++.. ...+.+.. .......+....++
T Consensus 67 Ii~TH~H~DH~gg~~~l~~~----~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 140 (303)
T 2vw8_A 67 WLITHKHYDHCGLLPYLCPR----LPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLP--EACAWDALPVRAVA 140 (303)
T ss_dssp EECCCCSTTTTTTHHHHGGG----CTTCEEEEEHHHHHHTTCHHHHHHHHHHHHHTCCTTCCCC--CCCCGGGSCEEEEC
T ss_pred EEeccCCccccCCHHHHHHh----CCCCeEEECHHHHHHHhccchhhHHHHHHHHHHHhhcccc--cccCCCCCCceEcC
Confidence 47899999999999987532 13588999998876543210 00000000 00000123345554
Q ss_pred -CCceEeCC-EEEEEEEec-CCCCceeeeEEEc--cEEEeCCCC
Q 028873 74 -EEPFTVQD-LKITPLPVW-HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 74 -~~~~~~~~-~~I~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
++.+++++ .+++.++++ |.. .+++|.++ +++|+||+-
T Consensus 141 ~g~~~~lg~g~~l~~i~~pGHt~--g~~~~~~~~~~~lf~GD~~ 182 (303)
T 2vw8_A 141 DGEWLELGPRHRLQVIEAHGHSD--DHVVFYDVRRRRLFCGDAL 182 (303)
T ss_dssp TTCEEEEETTEEEEEEECTTSST--TCEEEEETTTTEEEEETTT
T ss_pred CCCEEecCCCeEEEEEECCCCCc--ccEEEEECCCCEEEEcCcc
Confidence 47788887 899888886 776 78899996 899999994
No 50
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=98.22 E-value=1.5e-06 Score=67.50 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=62.2
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.+... .++||+++.+.+.+++. .+ .. + ...+. ++.+++++.+
T Consensus 81 ~ii~TH~H~DH~gg~~~l~~~------~~~v~~~~~~~~~~~~~-~~--~~----~--------~~~~~~~~~~~~g~~~ 139 (227)
T 1mqo_A 81 DVIITHAHADRIGGIKTLKER------GIKAHSTALTAELAKKN-GY--EE----P--------LGDLQTVTNLKFGNMK 139 (227)
T ss_dssp EEECCCCSHHHHTTHHHHHHH------TCEEECBHHHHHHHHHT-TC--CC----C--------CCCBCSEEEEEETTEE
T ss_pred EEEeCCCCchhccchHHHhhC------CcEEEeccchHHHHHhc-CC--CC----C--------ccccCCCCeeeECCEE
Confidence 347899999999999887532 57899999887766542 11 00 0 12222 3578889999
Q ss_pred EEEE-Ee-cCCCCceeeeEEEc--cEEEeCCCCC
Q 028873 84 ITPL-PV-WHGAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 84 I~~~-~v-~H~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
|+.+ +. -|.. .+++|.++ +++|+||+-.
T Consensus 140 i~~~~~~pgHt~--g~~~~~~~~~~~lf~GD~~~ 171 (227)
T 1mqo_A 140 VETFYPGKGHTE--DNIVVWLPQYNILVGGCLVK 171 (227)
T ss_dssp EEEECCCCSSSS--SCCEEEETTTTEEEEETTSC
T ss_pred EEEEecCCCCCC--CCEEEEECCCCEEEEeeeee
Confidence 9987 44 5776 78999997 8999999953
No 51
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=98.22 E-value=1.5e-06 Score=68.79 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=59.6
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (202)
.-++||.|.||++|+..|... ....+||+++.+.. . + .+.+ +++.+++++.+
T Consensus 56 ~Il~TH~H~DH~gg~~~l~~~----~~~~~v~~~~~~~~----------~-----~--------~~~~~~g~~~~~g~~~ 108 (245)
T 2gcu_A 56 YAMNTHVHADHVTGTGLLKTK----LPGVKSVISKASGS----------K-----A--------DLFLEPGDKVSIGDIY 108 (245)
T ss_dssp EEECSSCCSSSCBSHHHHHHH----STTCEEEEEGGGCC----------C-----C--------SEEECTTCEEEETTEE
T ss_pred EEEeCCCChhhhhhHHHHHHh----CCCCeEEecccccc----------c-----C--------CEEcCCCCEEEECCEE
Confidence 357899999999999988641 12478888865421 0 0 1223 34788999999
Q ss_pred EEEEEec-CCCCceeeeEEEc--------cEEEeCCCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG--------NICYISDVSEI 114 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~--------~~~y~~Dt~~~ 114 (202)
|+.++++ |.. .+++|+++ +++|+||+-..
T Consensus 109 i~v~~tpGHt~--g~~~~~~~~~~~~~~~~~lftGD~~~~ 146 (245)
T 2gcu_A 109 LEVRATPGHTA--GCVTYVTGEGADQPQPRMAFTGDAVLI 146 (245)
T ss_dssp EEEEECCSSST--TCEEEEECCSTTSCSSCEEEEETTSBT
T ss_pred EEEEECCCCCC--CCEEEEECCccccccccEEEECCcccc
Confidence 9999986 766 79999996 49999999644
No 52
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=98.20 E-value=1.6e-06 Score=68.00 Aligned_cols=135 Identities=7% Similarity=-0.084 Sum_probs=83.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCce-------eeec-C----C-CCCCCcccceEEEee
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYY-------LVDT-S----G-IIPGAAVSELQFNII 72 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~-------~~~~-~----~-~~~~~~~~~~~~~~~ 72 (202)
-++||.|.||++|++.+.. ...+||+++.+.+.+++.... .+.. . . .... .+.-++..+
T Consensus 72 vi~TH~H~DH~gg~~~l~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 143 (246)
T 2fhx_A 72 AINTHFHLDGTGGNEIYKK------MGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHP--VPADNVFDL 143 (246)
T ss_dssp EECCSSSHHHHTTHHHHHH------TTCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTCC--CCCSEEECT
T ss_pred EEeCCCCccccChHHHHhh------cCCEEEEcHHHHHHHHhcchhhhHHHHhhhccccchhhhccccc--CCCCceeec
Confidence 4689999999999988753 157899999887766432100 0000 0 0 0000 001123344
Q ss_pred C-CCceEeCCEEEEEEE-ec-CCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHH
Q 028873 73 D-EEPFTVQDLKITPLP-VW-HGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPR 147 (202)
Q Consensus 73 ~-~~~~~~~~~~I~~~~-v~-H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~e 147 (202)
. ++.+++++.+++.+. .+ |.. .+++|.++ +++|+||+-.. . ... .+. ...-..+.+
T Consensus 144 ~~g~~l~~g~~~i~~~~~~pGHt~--g~~~~~~~~~~~lf~GD~~~~-~-~~~------------~~~---~~~~~~~~~ 204 (246)
T 2fhx_A 144 KQGKVFSFSNELVEVSFPGPAHSP--DNVVVYFPKKKLLFGGCMIKP-K-ELG------------YLG---DANVKAWPD 204 (246)
T ss_dssp TTCEEEEETTEEEEEECCCCSSST--TCCEEEETTTTEEEEETTCCS-S-CCC------------CCT---TCCTTTHHH
T ss_pred CCCCEEEECCEEEEEEeCCCCCCC--CCEEEEEcCCCEEEECCEecc-C-CCC------------CCC---CCCHHHHHH
Confidence 3 467889999999984 54 877 78899996 89999999642 1 111 011 111234566
Q ss_pred HHHHHHHcCCCEEEEecCCC
Q 028873 148 ALEEVRKIQPKRTLFIGMMH 167 (202)
Q Consensus 148 a~~~~~~~~~k~lvltHl~~ 167 (202)
+++-+.+.+++.++-.|-.+
T Consensus 205 sl~~l~~l~~~~i~pgHg~~ 224 (246)
T 2fhx_A 205 SARRLKKFDAKIVIPGHGEW 224 (246)
T ss_dssp HHHHGGGSCCSEEEESBSCC
T ss_pred HHHHHHhCCCCEEECCCCCc
Confidence 66666666888999888654
No 53
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.18 E-value=7.9e-07 Score=76.89 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=61.0
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.|.... ..+||+++.....+... +. +....+.+. ++.+++++++
T Consensus 54 ~Il~TH~H~DH~gg~~~l~~~~-----~~~i~~~~~~~~~~~~~----~~----------~~~~~~~~~~g~~~~~g~~~ 114 (474)
T 3tp9_A 54 AALETHIHADFVSGAREMADRA-----GAAICVSDEGPPEWKSE----YV----------KAYPHRLLKDGDELHFGNVR 114 (474)
T ss_dssp EEECSSCCSSSCCCHHHHHHHH-----CCEEEEECCSCGGGCCG----GG----------GGSSEEEECTTCEEEETTEE
T ss_pred EEEcCcCchhhhCCHHHHHHHH-----CCcEEEcCcchhhhccc----cc----------ccccceECCCCCEEEECCEE
Confidence 3478999999999999986432 56788776543322110 00 011124443 4789999999
Q ss_pred EEEEEec-CCCCceeeeEEEc---------cEEEeCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFG---------NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~---------~~~y~~Dt~ 112 (202)
|+.++++ |.. .+++|.++ +++|+||+-
T Consensus 115 i~~i~tPGHt~--g~~~~~~~~~~~~~~~~~~lftGD~l 151 (474)
T 3tp9_A 115 IVVMHTPGHTP--EHVSYLLYDGKTSPDVPMALFSGDFV 151 (474)
T ss_dssp EEEEECCSSSS--SCEEEEEEETTTEEEEEEEEEEETSE
T ss_pred EEEEECCCCCC--CCEEEEEecCCCCCCCceEEEeCCcc
Confidence 9999998 766 78999985 399999995
No 54
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=98.15 E-value=1.6e-06 Score=66.47 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=57.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|++.+.... ..+||+++.+.+.+++..... ..+..+....+. ..+.++ ++.+. +++
T Consensus 49 ~vilTH~H~DH~gg~~~l~~~~-----~~~v~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~~~~~~g~~i~--~~~ 118 (207)
T 2zwr_A 49 AILLTHAHFDHVGAVAPLVEAL-----DLPVYLHPLDLPLYEGADLAA--RAWGLAIPKPPL-PVRPLEEGMRLF--GFQ 118 (207)
T ss_dssp CEECSCCCGGGTTTHHHHHHHH-----CCCEEECGGGHHHHHTHHHHH--HHTTCCCCCCCS-CCEECCTTCEET--TEE
T ss_pred EEEECCCChHHHccHHHHHHHh-----CCcEEECHHHHHHHhCchhhh--hhcCCCCCcCCC-CceEeCCCCEEE--EEE
Confidence 3478999999999999886431 478999999887776421100 000000000000 122333 23333 455
Q ss_pred EEEEEecCCCCceeeeEEEc--cEEEeCCCCCC
Q 028873 84 ITPLPVWHGAGYRSLGFRFG--NICYISDVSEI 114 (202)
Q Consensus 84 I~~~~v~H~~~~~~~gy~i~--~~~y~~Dt~~~ 114 (202)
+...|- |.. .+++|.++ +++|+||+.+.
T Consensus 119 ~~~~pG-Ht~--g~~~~~~~~~~~lf~GD~~~~ 148 (207)
T 2zwr_A 119 VLHLPG-HSP--GHVAFYDPEGAQVFSGDLLFR 148 (207)
T ss_dssp EEECCS-SST--TCEEEEETTTTEEEEETSEET
T ss_pred EEeCCC-CCC--CcEEEEECCCCEEEEecccCC
Confidence 544332 776 79999995 89999999643
No 55
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=98.13 E-value=2.6e-06 Score=67.94 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=58.3
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~I 84 (202)
-++||.|.||++|++.|.... ...+||+++... ++ + + .+.+ +++.+++++.++
T Consensus 56 Il~TH~H~DH~gg~~~l~~~~----~~~~v~~~~~~~------~~----------~---~---~~~~~~g~~~~~g~~~~ 109 (258)
T 2qed_A 56 IFLTHHHHDHVGGVKELLQHF----PQMTVYGPAETQ------DK----------G---A---THLVGDGDTIRVLGEKF 109 (258)
T ss_dssp EECCSCCHHHHTTHHHHHHHC----TTCEEEECGGGG------GG----------T---C---SEECCTTCEEEETTEEE
T ss_pred EEeCCCCccccCCHHHHHHHC----CCCEEEeccccc------CC----------C---C---cEEeCCCCEEEECCcEE
Confidence 478999999999999886432 137899987541 10 1 0 1233 346789999999
Q ss_pred EEEEec-CCCCceeeeEEEccEEEeCCCCC
Q 028873 85 TPLPVW-HGAGYRSLGFRFGNICYISDVSE 113 (202)
Q Consensus 85 ~~~~v~-H~~~~~~~gy~i~~~~y~~Dt~~ 113 (202)
+.++++ |.. .+++|.-++++|+||+-.
T Consensus 110 ~vi~tPGHt~--g~~~~~~~~~lftGD~l~ 137 (258)
T 2qed_A 110 TLFATPGHTL--GHVCYFSRPYLFCGDTLF 137 (258)
T ss_dssp EEEECCSSST--TCEEEEETTEEEEETTEE
T ss_pred EEEECCCCCC--CCeEEEcCCEEEECCCCC
Confidence 999987 776 788888449999999953
No 56
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=98.09 E-value=1.9e-06 Score=70.26 Aligned_cols=146 Identities=8% Similarity=-0.025 Sum_probs=81.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCce----------eeecCCCCCCC------------
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYY----------LVDTSGIIPGA------------ 62 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~----------~~~~~~~~~~~------------ 62 (202)
.-++||.|.||++|++.+.. + ..+||+++...+.+++.... .+.. ...+..
T Consensus 65 ~Vi~TH~H~DH~gg~~~l~~----~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 137 (317)
T 2zo4_A 65 TILLTHHHPDHYGLSGFFEG----L--GARVFLHEEEFARGHRFWREPEAFAEASWRLFLD-HGTPEGALQGIRETVEKT 137 (317)
T ss_dssp EEEESCCSHHHHTTHHHHHH----T--TCEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHH-TTCCC-------CHHHHH
T ss_pred EEEEcCCCCcccccHHHHHh----C--CCEEEEcHHHHHHHHhhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHHHhcccc
Confidence 34789999999999988752 1 57899988775544321100 0000 000100
Q ss_pred ---cccceEEEeeC-CCceEeCCEEEEEEEec-CCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCC
Q 028873 63 ---AVSELQFNIID-EEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRP 135 (202)
Q Consensus 63 ---~~~~~~~~~~~-~~~~~~~~~~I~~~~v~-H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~ 135 (202)
..+......+. ++.+.+++.+++.++++ |.. .+++|.+. +++|+||+-... .. .+... ++
T Consensus 138 ~~~~~~~~~~~~~~~g~~l~~gg~~~~~i~tpGHt~--g~~~~~~~~~~~lf~GD~~~~~--~~---~~~~~------~~ 204 (317)
T 2zo4_A 138 RERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHAD--GHAAFYLEEEGVLLAGDALLEK--VS---PNVGL------WA 204 (317)
T ss_dssp HTTCCCCSSCEEECTTCEEEETTEEEEEEECCSSST--TCEEEEETTTTEEEEETSCCSS--SC---CCCCC------CT
T ss_pred cccCCCCCCceEECCCCEEEeCCceEEEEECCCCCc--ccEEEEeCCCCEEEECCEecCC--CC---CCCcc------cC
Confidence 00001133443 47889999999999997 766 78888885 899999996421 10 11110 01
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCC
Q 028873 136 DRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD 170 (202)
Q Consensus 136 ~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~ 170 (202)
......-..+.++++-+...+++.++-.|-.+-.+
T Consensus 205 ~~~~~~~~~~~~sl~~l~~l~~~~v~pgHg~~~~~ 239 (317)
T 2zo4_A 205 YTRENPLKDFLRSLDRLADLGARVAYAGHFGPIAD 239 (317)
T ss_dssp TSCSCHHHHHHHHHHHHHTSCCSEEEESSSSCBSC
T ss_pred CCCCchHHHHHHHHHHHhcCCCCEEECCCCCccCC
Confidence 00000001233444444556778888888766544
No 57
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=98.09 E-value=3.2e-06 Score=67.57 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=57.3
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (202)
.-++||.|.||++|+..|.... ...+||+++.. + ++ . ...+ +++.+++++.+
T Consensus 49 ~IllTH~H~DH~gg~~~l~~~~----~~~~v~~~~~~-------~----------~~-----~-~~~~~~g~~~~~g~~~ 101 (260)
T 1qh5_A 49 TVLTTHHHWDHAGGNEKLVKLE----SGLKVYGGDDR-------I----------GA-----L-THKITHLSTLQVGSLN 101 (260)
T ss_dssp EEECCCSSHHHHTTHHHHHHHS----TTCEEEESCTT-------S----------TT-----C-SEECCTTCEEEETTEE
T ss_pred EEEeCCCCccccCCHHHHHHHC----CCCEEEECccc-------C----------CC-----C-CEEeCCCCEEEECCEE
Confidence 3478999999999999886432 24788987521 1 11 0 1223 34678899999
Q ss_pred EEEEEec-CCCCceeeeEEE-----c--cEEEeCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRF-----G--NICYISDVS 112 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i-----~--~~~y~~Dt~ 112 (202)
++.++++ |.. .+++|.+ . +++|+||+-
T Consensus 102 ~~vi~tPGHt~--g~~~~~~~~~~~~~~~~lftGD~l 136 (260)
T 1qh5_A 102 VKCLATPCHTS--GHICYFVSKPGGSEPPAVFTGDTL 136 (260)
T ss_dssp EEEEECCSSST--TCEEEEEECSSSSSCCEEEEETTE
T ss_pred EEEEECCCCCC--CCEEEEEeccCCCCCCEEEEcCcc
Confidence 9999887 766 7899999 3 899999994
No 58
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=98.07 E-value=1.4e-05 Score=62.01 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=81.1
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee---eec-CCCCCCCcccceEEEeeCC-CceEe
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL---VDT-SGIIPGAAVSELQFNIIDE-EPFTV 79 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (202)
.-++||.|.||++|++.+.. ...+||+++.+.+.+++..... ... ...++.... ......+++ ..+..
T Consensus 66 ~ii~TH~H~DH~gg~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 138 (233)
T 3q6v_A 66 EVINTNYHTDRAGGNAYWKT------LGAKIVATQMTYDLQKSQWGSIVNFTRQGNNKYPNLEK-SLPDTVFPGDFNLQN 138 (233)
T ss_dssp EEECSSSSHHHHTTHHHHHH------TTCEEEEEHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC-CCCSEEESSCEEETT
T ss_pred EEEECCCChhhhChHHHHhh------CCCEEEEcHHHHHHHHhhhHHHHHHHhccccccccccc-cCCCEEeCCCeEEcC
Confidence 34789999999999998862 3588999998877765421100 000 000010000 000122322 23333
Q ss_pred CCEEEEEEEecCCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHc--
Q 028873 80 QDLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI-- 155 (202)
Q Consensus 80 ~~~~I~~~~v~H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~-- 155 (202)
+++++...+--|.. .++.+.++ +++| +|+-... . ...+ .......+.++++.+++.
T Consensus 139 ~~~~v~~~~pGHt~--g~~~~~~~~~~~lf-gD~~~~~-~-~~~~---------------~~~~~~~~~~sl~~l~~l~~ 198 (233)
T 3q6v_A 139 GSIRAMYLGEAHTK--DGIFVYFPAERVLY-GNCILKE-N-LGNM---------------SFANRTEYPKTLEKLKGLIE 198 (233)
T ss_dssp TTEEEECCCCSSSS--SCCEEEETTTTEEE-CTTTSCS-S-CCCC---------------TTCCTTHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCc--CcEEEEeccCCEEE-Cceeccc-c-CCCC---------------CcCCHHHHHHHHHHHHHhhh
Confidence 45665554445876 67888885 8888 9985332 1 1110 112345677777777777
Q ss_pred ----CCCEEEEecCCCCCChHHH
Q 028873 156 ----QPKRTLFIGMMHLMDHEKV 174 (202)
Q Consensus 156 ----~~k~lvltHl~~~~~~~~~ 174 (202)
+++.++-.|-.+-.+.+.+
T Consensus 199 ~~~~~~~~i~pgHg~~~~~~~~i 221 (233)
T 3q6v_A 199 QGELKVDSIIAGHDTPIHDVGLI 221 (233)
T ss_dssp TTSSCCSEEECSSSSSEECTHHH
T ss_pred cccCCCeEEECCCCCccCCHHHH
Confidence 8899998886654444444
No 59
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=98.05 E-value=2e-06 Score=74.29 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=61.1
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
.-++||.|.||++|+..|.... ..+||+++..... +.+.+. + . ....+. ++.+++|+++
T Consensus 75 ~Il~TH~H~DH~gg~~~l~~~~-----~a~v~~~~~~~~~----~~~~~~-----~-----~-~~~~~~~g~~l~~g~~~ 134 (466)
T 3r2u_A 75 HAAETHIHADFASGIRDVAIKL-----NANIYVSGESDDT----LGYKNM-----P-----N-HTHFVQHNDDIYVGNIK 134 (466)
T ss_dssp EEECSSCCSSSCCCHHHHHHHH-----CCEEEEECCSCTT----TSCCSC-----C-----T-TCEEECTTCEEEETTEE
T ss_pred EEEECCCChhhhccHHHHHHhh-----CCeEEECcchhhh----hccccC-----C-----C-CCEEeCCCCEEEECCEE
Confidence 3478999999999999886432 4678887653221 111000 0 0 123443 4789999999
Q ss_pred EEEEEec-CCCCceeeeEEEcc---------EEEeCCCCC
Q 028873 84 ITPLPVW-HGAGYRSLGFRFGN---------ICYISDVSE 113 (202)
Q Consensus 84 I~~~~v~-H~~~~~~~gy~i~~---------~~y~~Dt~~ 113 (202)
|+.++++ |.. .+++|.++. ++|+||+-.
T Consensus 135 l~vi~tPGHT~--g~~~~~~~~~~~~~~~~~~lftGD~lf 172 (466)
T 3r2u_A 135 LKVLHTPGHTP--ESISFLLTDEGAGAQVPMGLFSGDFIF 172 (466)
T ss_dssp EEEEECCSSST--TCEEEEEECGGGTCCSCCEEEEETTBC
T ss_pred EEEEECCCCCC--CCEEEEEcCCCccCCCceEEEECCccc
Confidence 9999998 776 789999972 999999953
No 60
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=98.05 E-value=3.9e-06 Score=68.80 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=60.6
Q ss_pred ccchhhhhccccCChhhhhhhhc--cCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-CCCceEeCC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTN--NVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQD 81 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~--~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (202)
.-++||.|.||++|+..|..... .+....+||+++... + ++ + ...+ +++.+.+|+
T Consensus 87 ~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~~~~~~~------~----------~~---~---~~~l~~g~~l~lg~ 144 (311)
T 2p18_A 87 TILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDS------I----------PA---V---TKPVREGDRVQVGD 144 (311)
T ss_dssp EEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEEEEGGGT------C----------TT---C---SEEECTTCEEEETT
T ss_pred EEEeCCCCccccCCHHHHHHhhhhcccCCCCEEEEechhc------C----------CC---C---ceEeCCCCEEEECC
Confidence 34789999999999998875321 112257899986541 1 11 0 1223 357889999
Q ss_pred EEEEEEEec-CCCCceeeeEEE-------c-cEEEeCCCCCC
Q 028873 82 LKITPLPVW-HGAGYRSLGFRF-------G-NICYISDVSEI 114 (202)
Q Consensus 82 ~~I~~~~v~-H~~~~~~~gy~i-------~-~~~y~~Dt~~~ 114 (202)
.+|+.++++ |.. .+++|.+ + +++|+||+-+.
T Consensus 145 ~~l~vi~tPGHT~--g~i~~~~~~~~~~~~~~~lftGD~l~~ 184 (311)
T 2p18_A 145 LSVEVIDAPCHTR--GHVLYKVQHPQHPNDGVALFTGDTMFI 184 (311)
T ss_dssp EEEEEEECCSSST--TCEEEEEECTTCGGGCEEEEEETTEET
T ss_pred eEEEEEECCCCCc--ccEEEEEecCCcCCcCCEEEEcCcccc
Confidence 999999985 776 7899999 4 79999999543
No 61
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=98.05 E-value=8.7e-06 Score=69.27 Aligned_cols=87 Identities=9% Similarity=-0.035 Sum_probs=64.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLK 83 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (202)
+-++||.|.||++|++.++.-. ....+||+++...+.++..++. -+++.++ ++.+++|+.+
T Consensus 92 yIi~TH~h~DH~G~l~~l~~~~---~~~~~v~~s~~~~~~l~~~~~~---------------~~~~~v~dGd~l~lG~~~ 153 (410)
T 4dik_A 92 HIIVNHTEPDASGSLPATLKTI---GHDVEIIASNFGKRLLEGFYGI---------------KDVTVVKDGEEREIGGKK 153 (410)
T ss_dssp EEECSCCCHHHHTTHHHHHHHH---CSCCEEEECHHHHHHHHHHHCC---------------CCEEECCTTCEEEETTEE
T ss_pred EEEeCcCCcchhhhHHHHHHHc---CCCCEEEeCHHHHHHHHhhcCc---------------cceeEecCCCEEeecceE
Confidence 3468999999999999886421 3468999999988877764321 1134554 5889999999
Q ss_pred EEEEEec--CCCCceeeeEEEccEEEeCCC
Q 028873 84 ITPLPVW--HGAGYRSLGFRFGNICYISDV 111 (202)
Q Consensus 84 I~~~~v~--H~~~~~~~gy~i~~~~y~~Dt 111 (202)
++.++++ |.. .++-+..++++|++|.
T Consensus 154 L~~i~tPg~H~p--~~~~~y~~~iLFsgD~ 181 (410)
T 4dik_A 154 FKFVMTPWLHWP--DTMVTYLDGILFSCDV 181 (410)
T ss_dssp EEEEECTTSSST--TCEEEEETTEEEEETT
T ss_pred EEEecCCCCCCC--CCeeEEeCCceEcccc
Confidence 9999886 655 4555556899999998
No 62
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=98.01 E-value=4e-06 Score=65.24 Aligned_cols=124 Identities=17% Similarity=0.090 Sum_probs=77.1
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCCCceEeCCEEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKIT 85 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 85 (202)
-++||.|.||++|+..+.. ...+||+++.+.+.+++.... . + . ..+.+..+.+++.+++
T Consensus 73 ii~TH~H~DH~gg~~~l~~------~~~~v~~~~~~~~~~~~~~~~--~-----~-----~---~~~~g~~~~l~~~~i~ 131 (228)
T 1jjt_A 73 SISSHFHSDSTGGIEWLNS------RSIPTYASELTNELLKKDGKV--Q-----A-----T---NSFSGVNYWLVKNKIE 131 (228)
T ss_dssp EECSSSSHHHHTTHHHHHH------TTCCEEEEHHHHHHHHHTTCC--C-----C-----S---EEECSSCCEEETTTEE
T ss_pred EEeCCCChhhhccHHHHHh------CCCEEEEChHHHHHHHhcCCc--C-----c-----c---ccccCcceEecCceEE
Confidence 4789999999999988753 157899999998877652110 0 0 1 1122445566666677
Q ss_pred EE-Ee-cCCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHc--CCCE
Q 028873 86 PL-PV-WHGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI--QPKR 159 (202)
Q Consensus 86 ~~-~v-~H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~--~~k~ 159 (202)
.+ ++ -|.. .+++|.++ +++|+||+-.. .. ...+ .. ..--.+.++++-..+. ..+.
T Consensus 132 ~~~~~pGHt~--g~~~~~~~~~~~lf~GD~~~~-~~-~~~~------------~~---~d~~~~~~sl~~l~~~~~~~~~ 192 (228)
T 1jjt_A 132 VFYPGPGHTP--DNVVVWLPERKILFGGCFIKP-YG-LGNL------------GD---ANIEAWPKSAKLLKSKYGKAKL 192 (228)
T ss_dssp EECCCCSSST--TCCEEEETTTTEEEEETTCCT-TC-CCCC------------TT---CCTTTHHHHHHHHHHHTTTCSE
T ss_pred EEecCCCCCC--CcEEEEECCCcEEEEeccccc-cc-cCcc------------Cc---cCHHHHHHHHHHHHhhcCCCCE
Confidence 65 44 3776 78889985 89999999632 11 1100 00 1123455555555555 6778
Q ss_pred EEEecCCCCC
Q 028873 160 TLFIGMMHLM 169 (202)
Q Consensus 160 lvltHl~~~~ 169 (202)
++-.|-.+..
T Consensus 193 i~pgHg~~~~ 202 (228)
T 1jjt_A 193 VVPSHSEVGD 202 (228)
T ss_dssp EEESSSCCBC
T ss_pred EEcCCCCcCC
Confidence 8888865543
No 63
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=97.90 E-value=9.7e-06 Score=64.67 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=60.8
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEee-C-CCceEeCCE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-D-EEPFTVQDL 82 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 82 (202)
.-++||.|.||++|+..+.. ...+||+++.+.+.+++..... + ...+..+ + +..+.++++
T Consensus 108 ~VilTH~H~DH~gg~~~~~~------~~a~v~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~g~~ 169 (265)
T 2y8b_A 108 RSISTHFHDDRVGGVDVLRA------AGVATYTSPLTRQLAEAAGNEV-------P-----AHSLKALSSSGDVVRFGPV 169 (265)
T ss_dssp EEECSSSSHHHHTTHHHHHH------TTCEEEECHHHHHHHHHTTCCC-------C-----SEECSSCSSTTEEEEETTE
T ss_pred EEEeCCCChhhcCCHHHHhh------CCCeEEECHHHHHHHHhccccc-------c-----cccccccCCCCcEEeecCE
Confidence 34789999999999987653 2578999999988776532110 0 0111111 2 256677888
Q ss_pred EEEEEEecCCCCceeeeEEEc--cEEEeCCCCCC
Q 028873 83 KITPLPVWHGAGYRSLGFRFG--NICYISDVSEI 114 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~gy~i~--~~~y~~Dt~~~ 114 (202)
++....--|.. .+++|.++ +++|+||+-..
T Consensus 170 ~v~~~~pGHt~--g~~~~~~~~~~~lf~GD~~~~ 201 (265)
T 2y8b_A 170 EVFYPGAAHSG--DNLVVYVPAVRVLFGGCAVHE 201 (265)
T ss_dssp EEEECCSSSST--TCCEEEETTTTEEEEETTSCC
T ss_pred EEEecCCCCCC--CCEEEEecCCCEEEEcccccc
Confidence 88533335877 78899996 89999999643
No 64
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=97.85 E-value=4.3e-06 Score=64.88 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=54.9
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecC-CCCCCCcccceEEEeeCC-CceEeCCE
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTS-GIIPGAAVSELQFNIIDE-EPFTVQDL 82 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (202)
.-++||.|.||++|++.+. ..+||+++.. +++.+....... ..+........+++.+++ +.+..+++
T Consensus 76 ~ViiTH~H~DH~gg~~~~~--------~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 144 (221)
T 1ztc_A 76 DVLFTHVHLDHIFNSVLFE--------NATFYVHEVY---KTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKV 144 (221)
T ss_dssp EEECSCCCHHHHGGGGGCT--------TCEEEEEGGG---GGSCGGGGCHHHHHHHHHHHHTCCSEEEECSCCEETTTTE
T ss_pred EEEEcCCccccCCchhhCC--------CCEEEEeHHH---hhhhhhhhccchhhhhhhccccccceEEeCCCCEEECCeE
Confidence 4579999999999998763 3678887761 111110000000 000000000012344543 34432367
Q ss_pred EEEEEEecCCCCceeeeEEEc-----cEEEeCCCCCCC
Q 028873 83 KITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIP 115 (202)
Q Consensus 83 ~I~~~~v~H~~~~~~~gy~i~-----~~~y~~Dt~~~~ 115 (202)
++...| -|.. .+++|.++ +++|+||+.+.+
T Consensus 145 ~v~~~p-GHt~--g~~~~~~~~~~~~~vlftGD~~~~~ 179 (221)
T 1ztc_A 145 KVFHTP-WHAR--EHLSFLLDTENAGRVLITGDITPNR 179 (221)
T ss_dssp EEEECC-SSST--TCEEEEEEETTTEEEEECGGGSCSH
T ss_pred EEEEcC-CCCc--ccEEEEEEcCCCCeEEEEeCccccc
Confidence 777766 6877 79999986 699999998654
No 65
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=97.76 E-value=1.3e-05 Score=64.31 Aligned_cols=100 Identities=8% Similarity=-0.012 Sum_probs=58.7
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee---eecCCCCCCCcccceEEEeeCCCceEe-C
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL---VDTSGIIPGAAVSELQFNIIDEEPFTV-Q 80 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 80 (202)
.-++||.|.||++|++.+..- ..-...+||+++...+.+....... +... .+. .. .-++..+++ ..++ +
T Consensus 103 ~IllTH~H~DHigg~~~l~~~--~~fp~a~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~-~~~l~~ 175 (280)
T 3esh_A 103 YVLMTHMHFDHAAGLTDQAGH--AIFENAIHVVQQDEWHEFIAPNIRSKSTYWDK-NKG--DY-SNKLILFEK-HFEPVP 175 (280)
T ss_dssp EEECSCCCHHHHGGGSCTTSC--CSSTTCEEEEEHHHHHHHHSCCTTGGGTSCGG-GCC--GG-GGGEEEESS-EECSST
T ss_pred EEEeCCCcccccCcccccccc--cCCCCCEEEECHHHHHHhhCcccccccchhhh-hhh--hh-hheEEEeCC-CCeEcC
Confidence 457899999999999987531 0112588999999888776421100 0000 000 00 112334432 2223 2
Q ss_pred CEEEEEEEec-CCCCceeeeEEEc----cEEEeCCCCCCC
Q 028873 81 DLKITPLPVW-HGAGYRSLGFRFG----NICYISDVSEIP 115 (202)
Q Consensus 81 ~~~I~~~~v~-H~~~~~~~gy~i~----~~~y~~Dt~~~~ 115 (202)
+++ .++++ |.. .+++|+++ +++|+||+-+.+
T Consensus 176 gi~--~~~~pGHt~--g~~~~~i~~~~~~vlftGD~~~~~ 211 (280)
T 3esh_A 176 GIK--MQHSGGHSF--GHTIITIESQGDKAVHMGDIFPTT 211 (280)
T ss_dssp TEE--EEECCSSST--TCEEEEEEETTEEEEECGGGSCSG
T ss_pred CEE--EEEcCCCCc--ccEEEEEEECCcEEEEEEccCCch
Confidence 444 46666 665 68999995 799999997543
No 66
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=97.65 E-value=0.00017 Score=55.53 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=76.4
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCcee--ee-cCC-CCCCCcccceEEEeeCCCceEeC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYL--VD-TSG-IIPGAAVSELQFNIIDEEPFTVQ 80 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (202)
.-++||.|.||++|++.++. ...+||+++.+.+.+++..... +. ... .++.... ...-...+ ..+.++
T Consensus 63 ~ii~TH~H~DH~gg~~~l~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~ 134 (227)
T 3iog_A 63 EVINTNYHTDRAGGNAYWKS------IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPL-VLPNVVHD-GDFTLQ 134 (227)
T ss_dssp EEECSSSSHHHHTTHHHHHH------TTCEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSCCCCC-CCCSEEES-SCEEET
T ss_pred EEEeCCCchhhcChHHHHhh------CCCeEEECHHHHHHHHHhhHHHHHHhhcCCCCCCCccc-cCCCEeec-CeEEEc
Confidence 35789999999999998753 3578999999887765421100 00 000 0011000 00011223 347777
Q ss_pred CEEEEEEEe--cCCCCceeeeEEEc--cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHH--H
Q 028873 81 DLKITPLPV--WHGAGYRSLGFRFG--NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVR--K 154 (202)
Q Consensus 81 ~~~I~~~~v--~H~~~~~~~gy~i~--~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~--~ 154 (202)
+.+++.+.+ -|.. .++.+.++ +++| +|+-... . .. +. . ...-..+.++++-++ .
T Consensus 135 ~~~~~~~~~~pGHt~--g~~~~~~~~~~~lf-gd~l~~~-~-~~---~~---------~---~~~~~~~~~sl~~l~~~~ 194 (227)
T 3iog_A 135 EGKVRAFYAGPAHTP--DGIFVYFPDEQVLY-GGCILKE-K-LG---NL---------S---FADVKAYPQTLERLKAMK 194 (227)
T ss_dssp TTTEEEECCCCSSSS--SCCEEEETTTTEEE-CGGGSCS-S-CC---CC---------T---TCCTTHHHHHHHHHHHTC
T ss_pred CcEEEEEecCCCCCC--CcEEEEecCCCEEE-ccccccc-C-CC---Cc---------C---cCCHHHHHHHHHHHHhcc
Confidence 666666665 5876 67888885 7888 8764321 1 10 00 0 111233444555444 3
Q ss_pred cCCCEEEEecCCCCCCh
Q 028873 155 IQPKRTLFIGMMHLMDH 171 (202)
Q Consensus 155 ~~~k~lvltHl~~~~~~ 171 (202)
..++.++-.|-.+-.+.
T Consensus 195 l~~~~i~pgHg~~~~~~ 211 (227)
T 3iog_A 195 LPIKTVIGGHDSPLHGP 211 (227)
T ss_dssp CCCSEEECSSSCCEECT
T ss_pred CCCCEEEeCCCCCcCCH
Confidence 56788888886654333
No 67
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=97.60 E-value=0.00017 Score=64.89 Aligned_cols=106 Identities=8% Similarity=-0.029 Sum_probs=62.0
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHh---------------cCceeeecCC--CC---------
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK---------------THYYLVDTSG--II--------- 59 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~---------------~~~~~~~~~~--~~--------- 59 (202)
-++||.|.||++|+..|...........+||+++...+.+.. .++..+.... ..
T Consensus 165 IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~ 244 (658)
T 2cfu_A 165 VIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLA 244 (658)
T ss_dssp EECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCC
T ss_pred EEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHHHHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhccccccc
Confidence 478999999999999886310001235789999877654321 1111000000 00
Q ss_pred CCCcccceEEEee--CCCceEeCCEEEEEEEec-C-CCCceeeeEEEc--cEEEeCCCCC
Q 028873 60 PGAAVSELQFNII--DEEPFTVQDLKITPLPVW-H-GAGYRSLGFRFG--NICYISDVSE 113 (202)
Q Consensus 60 ~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~v~-H-~~~~~~~gy~i~--~~~y~~Dt~~ 113 (202)
.+...+...-..+ +++.+.++|.+++.+.++ | .. ..+++.+. +++|+||+-.
T Consensus 245 ~g~~~~~~p~~~~~~dG~~l~lgg~~l~vi~tPGHhTp--g~i~~~~p~~~vLftGD~v~ 302 (658)
T 2cfu_A 245 RGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESP--AEMNIWLPRQKALLMAENVV 302 (658)
T ss_dssp CSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSSSS--SBEEEEETTTTEEECTTTSC
T ss_pred CCCccCCCCcEEEecCceEEEECCEEEEEEeCCCCCCC--CcEEEEECCCCEEEEecccc
Confidence 0000000001223 236788999999999888 5 55 67888886 8999999864
No 68
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=97.44 E-value=5.2e-05 Score=62.45 Aligned_cols=102 Identities=9% Similarity=0.002 Sum_probs=55.7
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcC-----ce-----eeec-CCCCCCCcccceEEEeeC
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTH-----YY-----LVDT-SGIIPGAAVSELQFNIID 73 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~-----~~-----~~~~-~~~~~~~~~~~~~~~~~~ 73 (202)
.-++||.|.||++|+..+. ...-...+||+++...+.+.+.. +. .+.. ...... ....-+++.++
T Consensus 142 ~VilTH~H~DHiggl~~~~---~~~fp~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 217 (331)
T 1p9e_A 142 EIYITHMHPDHVGGLMVGE---QLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNP-YVKAGKFKPFS 217 (331)
T ss_dssp EEECSCCCHHHHGGGEETT---EESSTTCEEECBHHHHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHH-HHHTTCBCCBC
T ss_pred EEEeCCcccccCCcccccc---cccCCCCEEEECHHHHHHHhCchhhccCchhhhhHHHHHHHHHhhh-hcccCceEEeC
Confidence 3479999999999998431 01112578999998877654310 00 0000 000000 00001123333
Q ss_pred C-CceEeCCEEEEEEEec-CCCCceeeeEEEc----cEEEeCCCCCCC
Q 028873 74 E-EPFTVQDLKITPLPVW-HGAGYRSLGFRFG----NICYISDVSEIP 115 (202)
Q Consensus 74 ~-~~~~~~~~~I~~~~v~-H~~~~~~~gy~i~----~~~y~~Dt~~~~ 115 (202)
+ ..+. .+ |+.++++ |.. .+++|+++ +++|+||+.+.+
T Consensus 218 ~g~~i~-~g--i~vi~tpGHtp--G~~~~~i~~~~~~vlf~GD~~~~~ 260 (331)
T 1p9e_A 218 GNTDLV-PG--IKALASHGHTP--GHTTYVVESQGQKLALLGDLILVA 260 (331)
T ss_dssp SSEECS-TT--EEEEECTTSST--TCEEEEEEETTEEEEECTTSCCCH
T ss_pred CCCEEc-cc--EEEEEcCCCCh--hCEEEEEEECCcEEEEEECccCcc
Confidence 2 2222 24 4555555 766 78999995 899999998653
No 69
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=97.18 E-value=0.00014 Score=58.09 Aligned_cols=92 Identities=11% Similarity=0.041 Sum_probs=53.3
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I 84 (202)
-.+||.|.||++|+..|+. ..+++|+.+.+.+.+++............+. ...+++ ..+..+++.+
T Consensus 116 Ii~TH~H~DH~gg~~~l~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~ 182 (270)
T 4eyb_A 116 AVVTHAHQDKMGGMDALHA------AGIATYANALSNQLAPQEGMVAAQHSLTFAA-------NGWVEPATAPNFGPLKV 182 (270)
T ss_dssp EEECSSSHHHHTTHHHHHH------TTCEEEEEHHHHHHGGGGTCCCCSEEECBCT-------TSBBCGGGSTTCTTEEE
T ss_pred EEeCCCChhhcCcHHHHHH------CCCeEEECHHHHHHHHhcCccccccccCCCC-------ceeecCceeeecCceeE
Confidence 4689999999999988753 2588999998887765521110000000000 001111 3344556554
Q ss_pred EEEEecCCCCceeeeEEEc--cEEEeCCCC
Q 028873 85 TPLPVWHGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
....--|.. ..+.+.+. +++|+||+-
T Consensus 183 ~~~~pgHT~--g~~~~~~~~~~vLfsGD~l 210 (270)
T 4eyb_A 183 FYPGPGHTS--DNITVGIDGTDIAFGGCLI 210 (270)
T ss_dssp ECCCSSSSS--SCCEEEETTSSEEECTTTC
T ss_pred EecccccCC--CCEEEEecCCcEEEEeCee
Confidence 433334655 55666665 899999985
No 70
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=96.80 E-value=0.0009 Score=50.76 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=52.4
Q ss_pred cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeC-CCceEeCCEEE
Q 028873 6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI 84 (202)
Q Consensus 6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I 84 (202)
-++||. ||++|+..+... .+.+||+++.+.+.++. +. ...++ ++.+. +++++
T Consensus 60 ii~TH~--DH~gg~~~~~~~-----~~a~v~~~~~~~~~~~~------------~~-------~~~~~~g~~~~-~~~~~ 112 (201)
T 2p97_A 60 IVLTNS--DHVRSAKEIADQ-----TYTKIAGPVAEKENFPI------------YC-------DRWLSDGDELV-PGLKV 112 (201)
T ss_dssp EECSSG--GGCTTHHHHHHH-----SCCEEEEEGGGTTSCSS------------CC-------SEEECTTCBSS-TTEEE
T ss_pred EEECCc--hhhhhHHHHHHh-----cCCEEEEcHhHhhhhcc------------cC-------ceecCCCCEEc-ceEEE
Confidence 468998 999999987632 14889998876433211 00 12222 23332 25666
Q ss_pred EEEEecCCCCceeeeEEEc-cEEEeCCCCCC
Q 028873 85 TPLPVWHGAGYRSLGFRFG-NICYISDVSEI 114 (202)
Q Consensus 85 ~~~~v~H~~~~~~~gy~i~-~~~y~~Dt~~~ 114 (202)
...|.-|.. .+++|.++ +++|+||+-..
T Consensus 113 ~~~p~gHt~--g~~~~~~~~~~lf~GD~~~~ 141 (201)
T 2p97_A 113 MELQGSKTP--GELALLLEETTLITGDLVRA 141 (201)
T ss_dssp EEECSSSST--TEEEEEETTTEEEECSSEEB
T ss_pred EECCCCCCC--CcEEEEEcCCEEEECccccc
Confidence 666656987 78899998 79999999643
No 71
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=95.83 E-value=0.0002 Score=64.45 Aligned_cols=106 Identities=8% Similarity=-0.013 Sum_probs=59.5
Q ss_pred ccchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHH--Hh---------cCceeeecCC------CC-------C
Q 028873 5 FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVM--KK---------THYYLVDTSG------II-------P 60 (202)
Q Consensus 5 ~~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l--~~---------~~~~~~~~~~------~~-------~ 60 (202)
.-++||.|.||++|+..+...........+||+++...+.+ ++ ...+.+.... .. .
T Consensus 174 ~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e~~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~~ 253 (668)
T 2yhe_A 174 AVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFMEHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKTT 253 (668)
Confidence 34789999999999998863210012357899988763321 11 0111111000 00 0
Q ss_pred ---CCc-ccceEEEee-CCCceEeCCEEEEEEEec--CCCCceeeeEEEc--cEEEeCCCC
Q 028873 61 ---GAA-VSELQFNII-DEEPFTVQDLKITPLPVW--HGAGYRSLGFRFG--NICYISDVS 112 (202)
Q Consensus 61 ---~~~-~~~~~~~~~-~~~~~~~~~~~I~~~~v~--H~~~~~~~gy~i~--~~~y~~Dt~ 112 (202)
+.. ...-+.... +++.+.+||.+++.+.++ |.. ..+.+.+. +++++||+-
T Consensus 254 ~~~~~~~~~~P~~~~~~dg~~l~lgg~~l~vi~tPG~Htp--g~i~~~~p~~~vLftGD~~ 312 (668)
T 2yhe_A 254 ATNATNTLVAPNVLIEKPYERHTVDGVELEFQLTLGSEAP--SDMNIYLPQFKVLNTADNA 312 (668)
Confidence 000 000011222 236788899999888888 766 66777775 789999984
No 72
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=78.83 E-value=1.5 Score=37.14 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccc---cCCCcEEEeecCeEEeecC
Q 028873 140 STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLME---TEGLDVQLSYDGLRVPVML 202 (202)
Q Consensus 140 ~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~---~~~~~v~~A~DG~~i~l~~ 202 (202)
.+|...++..++++..++++++++|=.+.. ...+.+.+++..+ ..+.++....-|.+++|.|
T Consensus 394 S~Had~~~l~~~i~~~~p~~v~~vHGe~~~-~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 458 (459)
T 2i7t_A 394 SAHTDYQQTSEFIRALKPPHVILVHGEQNE-MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458 (459)
T ss_dssp SCCCCHHHHHHHHHHHCCSEEEEESSCHHH-HHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEE
T ss_pred cccCCHHHHHHHHHhcCCCeEEEeCCCHHH-HHHHHHHHHHHhccccccCceEEeCCCCCEEEEEe
Confidence 789999999999999999999999933322 2233333433210 0024678888888887753
No 73
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.08 E-value=2.6 Score=37.45 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHcC--CCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~--~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-.+|.+.++..++++..+ +|+++++|=.++. ...+.+.+++ ..|.++.+...|.+++|
T Consensus 576 ~SgHad~~eL~~~i~~~~~~Pk~vi~vHGe~~~-~~~~a~~~~~---~~g~~~~~p~~g~~~~l 635 (636)
T 2ycb_A 576 FSGHSDRRQLMEYVKRISPKPEKILLCHGDNYK-TLDLASSIYR---TYRIETKTPLNLETVRI 635 (636)
T ss_dssp CCSSCCHHHHHHHHHSCSSCCSEEEEESSCHHH-HHHHHHHHHH---HHCCEEECCCTTCEEEC
T ss_pred cceeCCHHHHHHHHHHhccCCCEEEEECCCHHH-HHHHHHHHHH---HcCCcEEeCCCCCEEEe
Confidence 579999999999999998 9999999932221 2233444432 23447888999998875
No 74
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=73.98 E-value=3.2 Score=36.96 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHcC--CCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~--~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-.+|.+.++..++++..+ +++++++|=.++. ...+.+.+++ ..|.++.+...|.++.|
T Consensus 580 ~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~-~~~~a~~~~~---~~g~~~~~p~~g~~~~l 639 (640)
T 2xr1_A 580 FSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKA-CVDLASSVYK---KLKIETRALTNLETVRL 639 (640)
T ss_dssp CSCSCCHHHHHHHHHTCBSCCSEEEEESSCHHH-HHHHHHHHHH---HHCCEEEECCTTCEEEC
T ss_pred ccccCCHHHHHHHHHHhccCCCEEEEECCCHHH-HHHHHHHHHH---HcCCeEEeCCCCCEEEe
Confidence 479999999999999998 9999999932222 2234444432 23458889999998875
No 75
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=73.86 E-value=2.8 Score=37.36 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHcC--CCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~--~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-.+|.+.++..++++..+ +++++++|=.++. ...+.+.+++ ..|.++.+...|.++.|
T Consensus 591 ~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~-~~~la~~~~~---~~g~~~~~p~~g~~~~l 650 (651)
T 3af5_A 591 FSGHADRRELMNYVAKVRPRPERIITVHGEPQK-CLDLATSIHR---KFGISTRAPNNLDTIRL 650 (651)
T ss_dssp GCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHH-HHHHHHHHHH---HHCCEEECCCTTCEEEC
T ss_pred ccCcCCHHHHHHHHHHhhcCCCEEEEEcCCHHH-HHHHHHHHHH---hcCCeEEECCCCCEEEe
Confidence 479999999999999998 9999999932222 2234443432 23447888899998875
No 76
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=72.07 E-value=4.3 Score=35.49 Aligned_cols=58 Identities=9% Similarity=-0.133 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCC---cEEEeecCeEEeec
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL---DVQLSYDGLRVPVM 201 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~---~v~~A~DG~~i~l~ 201 (202)
-.+|.+.+|..++++..++|+++++|=..+. .....+.+++ .|. ++.+...|..++|.
T Consensus 380 ~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~-~~~~~~~~~~----~g~~~~~~~~~~~G~~~~l~ 440 (562)
T 3bk2_A 380 ASGHASQEELKLILNLTTPRFFLPWHGEVRH-QMNFKWLAES----MSRPPEKTLIGENGAVYRLT 440 (562)
T ss_dssp CCSSCCHHHHHHHHHHHCCSEEEEESBCHHH-HHHHHHHHHT----SSSCCSEECCCCTTEEEEEC
T ss_pred EeCCCCHHHHHHHHHhcCCCEEEEEcCCHHH-HHHHHHHHHH----cCCCcceEEECCCCCEEEEe
Confidence 4799999999999999999999999932221 1222222332 222 57788888888763
No 77
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=61.13 E-value=7.4 Score=32.37 Aligned_cols=51 Identities=16% Similarity=0.007 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-.+|.+.+|..++++..++|+++.+|=..+. +.+ ..+.++.+..+|.+++|
T Consensus 379 ~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~----~~~-------~~~~~~~~~~~g~~~~l 429 (429)
T 2az4_A 379 CSGHAIPEDLDKIIALIEPQVLVPIHTLKPE----KLE-------NPYGERILPERGEQIVL 429 (429)
T ss_dssp CCSSCCHHHHHHHHHHHCCSEEEEESCSCGG----GCC-------CTTSEECCCCTTCEEEC
T ss_pred ecCCCCHHHHHHHHHhhCCCEEEECCCCchh----hhh-------cCCCcEEEeCCCcEEeC
Confidence 4789999999999999999999999943321 111 12337888999998875
No 78
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=54.40 E-value=10 Score=33.12 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCC---cEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL---DVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~---~v~~A~DG~~i~l 200 (202)
-.+|.+.+|...+.+..++|.++.+|=..+. .....+.+++ .|. ++.+...|..+++
T Consensus 365 ~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~-~~~~~~~a~~----~G~~~~~~~~~~nG~~~~l 424 (555)
T 3zq4_A 365 TSGHGGQEEQKLMLRLIKPKFFMPIHGEYRM-QKMHVKLATD----CGIPEENCFIMDNGEVLAL 424 (555)
T ss_dssp CCSSCCHHHHHHHHHHSCEEEEEEESBCHHH-HHHHHHHHHH----TTCCGGGBCCCCTTCEEEE
T ss_pred EeCCCCHHHHHHHHHHhCCCEEEEcCCCHHH-HHHHHHHHHH----cCCCcccEEEccCCCEEEE
Confidence 3799999999999999999999999932221 1112222222 222 5777888888876
No 79
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=43.98 E-value=22 Score=29.01 Aligned_cols=65 Identities=8% Similarity=0.156 Sum_probs=41.7
Q ss_pred EEccEEEeCCC-CCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 028873 101 RFGNICYISDV-SEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 167 (202)
Q Consensus 101 ~i~~~~y~~Dt-~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~ 167 (202)
+|+++.|.++. ... ++.++.++++|++|+-- ++.. +.--++...+..+..++.+++++++.-+..
T Consensus 154 ~i~~v~l~p~~~~~~-p~~l~AI~~AD~IvlgPGS~~T-SI~P~Llv~gi~~Ai~~s~A~kV~v~N~~~ 220 (332)
T 2ppv_A 154 KIDRVFLEPSDVEPM-NEAIEALEQADLIVLGPGSLYT-SVISNLCVKGISEALLRTSAPKLYVSNVMT 220 (332)
T ss_dssp CEEEEEEESCCCCCC-HHHHHHHHHCSEEEECSSCCCC-CCHHHHTSHHHHHHHHHCCSCEEEECCSBC
T ss_pred CceEEEEeCCCCCCC-HHHHHHHHhCCEEEECCCCCHH-HhcccccCchHHHHHHhCCCCEEEEcCCCC
Confidence 34577777653 444 46888899999988853 2221 233456666766767777777777777653
No 80
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=41.72 E-value=57 Score=23.69 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=36.6
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCC--CCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSS--STHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~--~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++.+|....++++.+.++++|++|+-+....... ..-......++.+++.++++++++=
T Consensus 45 ~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~S 105 (219)
T 3dqp_A 45 AVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLS 105 (219)
T ss_dssp EEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEecccCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3456765312457778889999999776543211 1111245567777778888887644
No 81
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=41.42 E-value=50 Score=23.36 Aligned_cols=26 Identities=0% Similarity=0.120 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHcCCCEEEEe---cCCCCC
Q 028873 144 GLPRALEEVRKIQPKRTLFI---GMMHLM 169 (202)
Q Consensus 144 ~~~ea~~~~~~~~~k~lvlt---Hl~~~~ 169 (202)
..+++.+++.+.++++++|. |+|.+.
T Consensus 60 av~eI~~~a~kv~~~~ivlYPyAHLSs~L 88 (143)
T 2hl0_A 60 AIEEISKVAEQVKAENVFVYPFAHLSSEL 88 (143)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECGGGCSSB
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCcc
Confidence 35678888999999999985 777776
No 82
>3sft_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; modified doubly-wound/fold, chemoreceptor; 2.15A {Thermotoga maritima}
Probab=40.49 E-value=33 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=26.1
Q ss_pred CCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 156 QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 156 ~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
++.-++.-|+++.+ ...+.+.+.+. +..+|..|.||+.+
T Consensus 34 ~~~ivivQHm~~~f-~~~la~~L~~~---~~l~V~ea~dg~~l 72 (193)
T 3sft_A 34 PAPIVVVQHMPPGF-TKSLAMRLDST---SELTVKEAEDGEEV 72 (193)
T ss_dssp SSCEEEEECCCTTC-HHHHHHHHHHH---CSSEEEECCTTCBC
T ss_pred CCeEEEEECCCCCc-HHHHHHHHhcc---CCCcEEEeCCCCEe
Confidence 45678889999988 44555555542 44467777777765
No 83
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=39.21 E-value=33 Score=28.58 Aligned_cols=55 Identities=22% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 200 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l 200 (202)
-.+|....+..++++..+ +++|+|=.+.. .+.+.+.+++ +.. ++.+..-|.++++
T Consensus 377 ~saHad~~~l~~~~~~~~--~v~lvHge~~~-~~~l~~~l~~---~~~-~~~~p~~~~~~~~ 431 (431)
T 3iek_A 377 FSGHAGQDELLDWLQGEP--RVVLVHGEEEK-LLALGKLLAL---RGQ-EVSLARFGEGVPV 431 (431)
T ss_dssp GCSSCCHHHHHHHHTTCS--EEEEESSCHHH-HHHHHHHHHH---TTC-EEEECCTTCCEEC
T ss_pred ccccCCHHHHHHHHHhCC--eEEEECCCHHH-HHHHHHHHHH---hCC-cEEECCCCCEEeC
Confidence 368999999999998654 99999943322 3445555554 233 7888888887764
No 84
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=37.52 E-value=92 Score=22.82 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=36.1
Q ss_pred EEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCC------CCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 105 ICYISDVSEIPEETYPFLQDCEILIMDALRPDRSS------STHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 105 ~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~------~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
-++.+|.. +.+.+.++++|++|+-+....... ..-......++.+++.+.++++++=
T Consensus 68 ~~~~~Dl~---~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~S 130 (236)
T 3e8x_A 68 DIVVANLE---EDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130 (236)
T ss_dssp EEEECCTT---SCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEEC
T ss_pred eEEEcccH---HHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEe
Confidence 35567776 467788889999999876543111 0111234456666777888888743
No 85
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=35.92 E-value=30 Score=28.36 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecCCCCC-ChHHHHHHHh
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLM-DHEKVNEELL 179 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~-~~~~~~~~~~ 179 (202)
-..|+++.|..++++..++++++-||-.... .-+.|++-++
T Consensus 318 ySeHss~~EL~~fv~~l~p~~iiptv~~~~~~~~~~m~~~~~ 359 (367)
T 4b87_A 318 YSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFR 359 (367)
T ss_dssp CCSSCCHHHHHHHHHHHCCSEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHhcCCCeEECeecCCCHHHHHHHHHHHH
Confidence 3579999999999999999999999955432 1234444444
No 86
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl methylesteras; 1.75A {Salmonella typhimurium} SCOP: c.40.1.1
Probab=33.55 E-value=65 Score=24.12 Aligned_cols=50 Identities=20% Similarity=0.115 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCC---CEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEE
Q 028873 145 LPRALEEVRKIQP---KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 198 (202)
Q Consensus 145 ~~ea~~~~~~~~~---k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i 198 (202)
++...+++....+ --++.-|+++.+ ...+.+.+.+. +..+|..|.||+.+
T Consensus 22 ~~AL~~~l~~LP~~~~~ivivQHm~~~f-~~~la~~L~~~---~~l~V~ea~dg~~l 74 (203)
T 1chd_A 22 TEAIRHVLQPLPLSSPAVIITQHMPPGF-TRSFAERLNKL---CQISVKEAEDGERV 74 (203)
T ss_dssp HHHHHHHHTTCCTTSCEEEEEECCCTTH-HHHHHHHHHHH---CSSEEEECCTTCBC
T ss_pred HHHHHHHHHhCCCCCCeEEEEECCCCch-HHHHHHHHcCc---CCCcEEECCCCCEe
Confidence 3444555555432 177778988887 44555555542 34467777777755
No 87
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=33.25 E-value=17 Score=27.97 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=35.5
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecC
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGM 165 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl 165 (202)
++.+|.... +.+.+.++++|.+|+-+.........-.....+++.+++.++++++.+--
T Consensus 48 ~~~~D~~d~-~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 48 VRQLDYFNQ-ESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp EEECCTTCH-HHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEcCCCCH-HHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 345676532 35667889999999866533210000012245677778889998887654
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=32.72 E-value=85 Score=24.74 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=38.6
Q ss_pred cCCC--EEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeE
Q 028873 123 QDCE--ILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLR 197 (202)
Q Consensus 123 ~~~D--lLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~ 197 (202)
.+.+ +||+|.+-.-. ...++.++.+..+..-+++||+........+...... .+.++.+-.+|..
T Consensus 218 ~~P~e~lLvLDptsglD------~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~----~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 218 GAPNEILLVLDGNTGLN------MLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEE----LGIPVKFIGVGEA 284 (302)
T ss_dssp TCCSEEEEEEEGGGGGG------GHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH----HCCCEEEEECSSS
T ss_pred cCCCeeEEEEeCCCCcC------HHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHH----HCCCEEEEeCCCC
Confidence 4688 99999542211 1244555656678899999998776544444333332 2235666666644
No 89
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=31.60 E-value=83 Score=24.12 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=37.3
Q ss_pred EeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcC-CCEEEEec
Q 028873 107 YISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQ-PKRTLFIG 164 (202)
Q Consensus 107 y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~-~k~lvltH 164 (202)
+.+|.... +++.+.++++|.+|+-+..... ...-.....+++.+++.+ +++++.+-
T Consensus 60 ~~~D~~d~-~~l~~~~~~~d~vi~~a~~~~~-~~~~~~~~~l~~aa~~~g~v~~~v~S~ 116 (313)
T 1qyd_A 60 IEASLDDH-QRLVDALKQVDVVISALAGGVL-SHHILEQLKLVEAIKEAGNIKRFLPSE 116 (313)
T ss_dssp ECCCSSCH-HHHHHHHTTCSEEEECCCCSSS-STTTTTHHHHHHHHHHSCCCSEEECSC
T ss_pred EeCCCCCH-HHHHHHHhCCCEEEECCccccc-hhhHHHHHHHHHHHHhcCCCceEEecC
Confidence 45676532 4577888999999997754421 112234567788888888 99998543
No 90
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=30.38 E-value=20 Score=29.11 Aligned_cols=64 Identities=8% Similarity=0.224 Sum_probs=37.6
Q ss_pred EEccEEEeCCC-CCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCC
Q 028873 101 RFGNICYISDV-SEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM 166 (202)
Q Consensus 101 ~i~~~~y~~Dt-~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~ 166 (202)
+|+++.|.++. ... ++.++.++++|++|+-- ++.. +.--++...+..+..++.+++++++.-+.
T Consensus 155 ~i~~v~~~p~~~~~~-p~~l~AI~~AD~IvlgPGS~~T-SI~P~Llv~gi~~Ai~~s~A~kV~v~Nl~ 220 (323)
T 2o2z_A 155 KIKRVFLTPKDTKPL-REGLEAIRKADVIVIGPGSLYT-SVLPNLLVPGICEAIKQSTARKVYICNVM 220 (323)
T ss_dssp CEEEEEEESTTCCCC-HHHHHHHHHCSEEEECSSCTTT-THHHHHTSTTHHHHHHHCCSEEEEECCSB
T ss_pred CceEEEEeCCCCCCC-HHHHHHHHhCCEEEECCCCCHH-HhcccccCchHHHHHHhCCCCEEEEcCCC
Confidence 45577787753 344 46888889999988852 2221 11224444555555555666666666654
No 91
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=29.89 E-value=1.1e+02 Score=19.27 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCChHHHHHH---Hhhc-cccCCCcEEEeecCeEEeec
Q 028873 145 LPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEE---LLKL-METEGLDVQLSYDGLRVPVM 201 (202)
Q Consensus 145 ~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~---~~~~-~~~~~~~v~~A~DG~~i~l~ 201 (202)
+.|..+..++-|+||+-+.= ..+. .++.++. +-+. ++..-..+.+..||.++.++
T Consensus 33 lnelmdyikkqgakrvrisi-tart-kkeaekfaailikvfaelgyndinvtfdgdtvtve 91 (106)
T 1qys_A 33 LNELMDYIKKQGAKRVRISI-TART-KKEAEKFAAILIKVFAELGYNDINVTFDGDTVTVE 91 (106)
T ss_dssp HHHHHHHHHHHCCSEEEEEE-ECSS-HHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEEE-Eecc-hhHHHHHHHHHHHHHHHhCCcceeEEEcCCeEEEE
Confidence 46778888999999987542 2222 2222221 1111 11122368889999998864
No 92
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=27.70 E-value=1.3e+02 Score=23.10 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCC---CC---CCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSSS---TH---FGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~---~H---~~~~ea~~~~~~~~~k~lvltH 164 (202)
++.+|.. ++.+.+.++++|++|+-+........ .. ......++.+++.++++++++=
T Consensus 46 ~~~~Dl~--~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 46 YRVSDYT--LEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp EEECCCC--HHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEcccc--HHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 4567887 45677888999999997765431110 00 1124567777788999887643
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=27.51 E-value=1.1e+02 Score=24.85 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=38.1
Q ss_pred cCCC--EEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeE
Q 028873 123 QDCE--ILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLR 197 (202)
Q Consensus 123 ~~~D--lLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~ 197 (202)
.+.+ +||+|++-.-. ...++.++.+..+..-+++||+......-........ .+.+|.+--.|..
T Consensus 275 ~~P~e~lLvLDpttglD------~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~----~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 275 GAPNEILLVLDGNTGLN------MLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEE----LGIPVKFIGVGEA 341 (359)
T ss_dssp TCCSEEEEEEEGGGGGG------GHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH----HCCCEEEEECSSS
T ss_pred cCCCceEEEEcCCCCCC------HHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHH----hCCCEEEEeCCCC
Confidence 4688 88888542211 1245556666678899999998765544333333332 2335666555554
No 94
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=27.03 E-value=55 Score=23.83 Aligned_cols=52 Identities=8% Similarity=0.185 Sum_probs=35.1
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++.+|.... +++.+.++++|++|+-+.... .. ...+++.+++.+.++++.+-
T Consensus 56 ~~~~D~~d~-~~~~~~~~~~d~vv~~ag~~n--~~----~~~~~~~~~~~~~~~iv~iS 107 (221)
T 3r6d_A 56 VIEGSFQNP-GXLEQAVTNAEVVFVGAMESG--SD----MASIVKALSRXNIRRVIGVS 107 (221)
T ss_dssp EEECCTTCH-HHHHHHHTTCSEEEESCCCCH--HH----HHHHHHHHHHTTCCEEEEEE
T ss_pred EEECCCCCH-HHHHHHHcCCCEEEEcCCCCC--hh----HHHHHHHHHhcCCCeEEEEe
Confidence 445677532 356678889999999775321 01 66777777888888887643
No 95
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=26.59 E-value=42 Score=27.11 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 139 SSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 139 ~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
-.+|.+.+|..++.+..++|+++-+|
T Consensus 274 ~S~Ha~~~EL~~~~~~~~P~~~iPvh 299 (336)
T 3zdk_A 274 YSDHSSYSELRAFVAALKPCQVVPIV 299 (336)
T ss_dssp CCSSCBHHHHHHHHHHHCCSCEEESC
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEEEE
Confidence 37899999999999999999999999
No 96
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=24.76 E-value=52 Score=26.61 Aligned_cols=64 Identities=5% Similarity=0.022 Sum_probs=44.5
Q ss_pred EccEEE-eCC----CCCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 028873 102 FGNICY-ISD----VSEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 167 (202)
Q Consensus 102 i~~~~y-~~D----t~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~ 167 (202)
|+++.| .+- ....+ +.++.++++|++|+-- ++.. +.--++...+..+..++.+++++++.-+..
T Consensus 158 I~~v~l~~p~~~~~~~a~p-~al~AI~~AD~IvlgPGSl~T-SI~P~Llv~gi~~Ai~~s~A~kV~v~Nlm~ 227 (326)
T 2q7x_A 158 IDNVYVTNALNDDTPLASR-RVVQTILESDMIVLGPGSLFT-SILPNIVIXEIGRALLETXAEIAYVCNIMT 227 (326)
T ss_dssp EEEEEEEESSCSSCCCBCS-HHHHHHHHCSEEEECSSCCCC-CCHHHHTSHHHHHHHHHCSSEEEEECCSBC
T ss_pred ceEEEEeCCCCCCCCCCCH-HHHHHHHhCCEEEECCCCCHH-HHhhhhhhccHHHHHHhccCceEEeccCcC
Confidence 346777 443 34444 6788899999988853 2221 334577788888888888999999988653
No 97
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=24.63 E-value=56 Score=24.18 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=35.7
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++.+|.... +.+.+.++++|++|+-+.... .-...+.+++.+++.+.+++|.+=
T Consensus 71 ~~~~Dl~d~-~~~~~~~~~~D~vv~~a~~~~----~~~~~~~~~~~~~~~~~~~iV~iS 124 (236)
T 3qvo_A 71 IIMGDVLNH-AALKQAMQGQDIVYANLTGED----LDIQANSVIAAMKACDVKRLIFVL 124 (236)
T ss_dssp EEECCTTCH-HHHHHHHTTCSEEEEECCSTT----HHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEecCCCH-HHHHHHhcCCCEEEEcCCCCc----hhHHHHHHHHHHHHcCCCEEEEEe
Confidence 456777532 356678899999998765321 112345677777888888888654
No 98
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=24.14 E-value=1.3e+02 Score=18.49 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCC--hHHHHHHHhhccccCC-CcEEEeecCeEEeec
Q 028873 145 LPRALEEVRKIQPKRTLFIGMMHLMD--HEKVNEELLKLMETEG-LDVQLSYDGLRVPVM 201 (202)
Q Consensus 145 ~~ea~~~~~~~~~k~lvltHl~~~~~--~~~~~~~~~~~~~~~~-~~v~~A~DG~~i~l~ 201 (202)
++|..+...++|++.+-+| +|.+++ .+++.+.+....++.| ..+.+-..|.++.++
T Consensus 35 lqelekalaragarnvqit-isaendeqakelleliarllqklgykdinvrvngtevkie 93 (96)
T 2jvf_A 35 LQELEKALARAGARNVQIT-ISAENDEQAKELLELIARLLQKLGYKDINVRVNGTEVKIE 93 (96)
T ss_dssp HHHHHHHHHHHTCSEEEEE-EECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccccceEEE-EEecChHHHHHHHHHHHHHHHHhCCCceEEEEcCEEEEEE
Confidence 4566666778899988877 466664 2333332222211111 256666677776654
No 99
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=23.91 E-value=97 Score=23.29 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=33.6
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++.+|.... +++.+.++++|.+|+-+.... ...-.....+++.+++.++++++.+=
T Consensus 48 ~~~~D~~d~-~~~~~~~~~~d~vi~~a~~~~--~~~~~~~~~l~~a~~~~~~~~~v~~S 103 (286)
T 2zcu_A 48 VRQADYGDE-AALTSALQGVEKLLLISSSEV--GQRAPQHRNVINAAKAAGVKFIAYTS 103 (286)
T ss_dssp EEECCTTCH-HHHHHHTTTCSEEEECC----------CHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEcCCCCH-HHHHHHHhCCCEEEEeCCCCc--hHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 345676532 356678889999999765421 11112345667777778888888764
No 100
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=21.86 E-value=1.1e+02 Score=22.66 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=30.4
Q ss_pred cEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHH
Q 028873 104 NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVR 153 (202)
Q Consensus 104 ~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~ 153 (202)
.++|.++.+ ++++ .++.||.++- ..+..+.+.|++...|++++-
T Consensus 137 alvFG~~~G-Ltne---el~~cd~~l~--~Ip~~~eY~~Lnl~~AVaIiL 180 (192)
T 3dcm_X 137 LILLGTGWG-LPDE---ILEISDYVLE--PIRAQSDFNHLSVRAAAAIII 180 (192)
T ss_dssp EEEECCTTC-CCHH---HHTTCSEEBC--CTTTTSSCCCCCHHHHHHHHH
T ss_pred EEEECCCCC-CCHH---HHHhcCEEEc--cCCCCCCCCccCHHHHHHHHH
Confidence 588888765 5543 4568998762 222225689999999999763
No 101
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=21.57 E-value=48 Score=27.05 Aligned_cols=64 Identities=5% Similarity=0.058 Sum_probs=43.3
Q ss_pred EccEEEeCC----CCCCCcchhhhccCCCEEEEec-cCCCCCCCCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 028873 102 FGNICYISD----VSEIPEETYPFLQDCEILIMDA-LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 167 (202)
Q Consensus 102 i~~~~y~~D----t~~~~~~~~~~~~~~DlLi~e~-~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltHl~~ 167 (202)
|+++.|.+- .... ++.++.++++|++|+-- ++.. +.--++...+..+.+++.+++++++.-+..
T Consensus 163 I~~v~l~p~~~~~~~a~-p~al~AI~~AD~IvlgPGSlyT-SI~P~Llv~gi~~Ai~~s~A~kV~V~Nlm~ 231 (341)
T 2p0y_A 163 LERVWVTDKNGKEPQAV-QPVIDAIMAADQIVLGPGSLFT-SILPNLTIGNIGRAVCESDAEVVYICNIMT 231 (341)
T ss_dssp CCCEEEC------CCCC-HHHHHHHHHCSEEEECSSCCCC-CCHHHHSSHHHHHHHHHCSSEEEEECCSBC
T ss_pred ceEEEEeCCCCCCCCCC-HHHHHHHHhCCEEEECCCCCHH-HhcccccCccHHHHHHhCCCCEEEEeCCCC
Confidence 446777553 3333 46888899999988853 2221 334567788888888888899999887653
No 102
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=20.54 E-value=89 Score=23.58 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=35.8
Q ss_pred EEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCC------CCCCHHHHHHHHHHcCCCEEEEe
Q 028873 105 ICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSS------THFGLPRALEEVRKIQPKRTLFI 163 (202)
Q Consensus 105 ~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~------~H~~~~ea~~~~~~~~~k~lvlt 163 (202)
.++.+|.... +++.++++++|++|+-+.......+ .-.......+.+++.+.++++.+
T Consensus 46 ~~~~~Dl~d~-~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~ 109 (267)
T 3rft_A 46 ECVQCDLADA-NAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFA 109 (267)
T ss_dssp EEEECCTTCH-HHHHHHHTTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCCH-HHHHHHHcCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456777533 3567788899999998865321110 11222345566677788888875
No 103
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=20.14 E-value=56 Score=23.79 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=33.7
Q ss_pred EEeCCCCCCCcchhhhccCCCEEEEeccCCCC-CCCC---CCCHHHHHHHHHHcCCCEEEEec
Q 028873 106 CYISDVSEIPEETYPFLQDCEILIMDALRPDR-SSST---HFGLPRALEEVRKIQPKRTLFIG 164 (202)
Q Consensus 106 ~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-~~~~---H~~~~ea~~~~~~~~~k~lvltH 164 (202)
++.+|.... +++.+.++++|++|+-+..... .... -......++.+++.++++++++-
T Consensus 50 ~~~~Dl~d~-~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 111 (227)
T 3dhn_A 50 VKKADVSSL-DEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVG 111 (227)
T ss_dssp EECCCTTCH-HHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEecCCCH-HHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 345676532 4567788999999997644321 1111 11234556667777888887754
Done!