Query 028874
Match_columns 202
No_of_seqs 231 out of 802
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 99.9 3.2E-27 6.8E-32 186.9 4.5 83 113-196 1-86 (118)
2 PHA02825 LAP/PHD finger-like p 99.7 1.8E-18 4E-23 143.0 4.8 68 54-124 3-70 (162)
3 smart00744 RINGv The RING-vari 99.7 3.1E-18 6.7E-23 116.3 3.0 48 61-108 1-49 (49)
4 PHA02862 5L protein; Provision 99.7 5.4E-18 1.2E-22 138.6 3.9 54 59-114 2-55 (156)
5 KOG1609 Protein involved in mR 99.7 3.7E-18 8E-23 148.3 0.3 141 53-194 72-220 (323)
6 PF12906 RINGv: RING-variant d 99.7 5.8E-18 1.2E-22 114.0 1.2 46 62-107 1-47 (47)
7 KOG3053 Uncharacterized conser 99.5 2.2E-14 4.7E-19 126.7 3.9 67 54-120 15-90 (293)
8 COG5183 SSM4 Protein involved 99.5 2.2E-14 4.8E-19 141.5 4.0 54 59-112 12-66 (1175)
9 PF13639 zf-RING_2: Ring finge 97.5 2.5E-05 5.3E-10 50.8 0.4 41 61-108 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.3 0.00032 7E-09 64.9 4.5 49 60-114 230-280 (348)
11 cd00162 RING RING-finger (Real 97.0 0.00052 1.1E-08 42.4 2.6 44 61-110 1-44 (45)
12 PLN03208 E3 ubiquitin-protein 97.0 0.00075 1.6E-08 58.0 3.8 51 56-112 15-79 (193)
13 PHA02929 N1R/p28-like protein; 97.0 0.0006 1.3E-08 60.1 3.2 49 57-112 172-227 (238)
14 COG5540 RING-finger-containing 96.8 0.0011 2.4E-08 60.9 3.3 50 57-113 321-373 (374)
15 smart00184 RING Ring finger. E 96.5 0.0025 5.4E-08 37.9 2.6 39 62-107 1-39 (39)
16 PF00097 zf-C3HC4: Zinc finger 96.4 0.0016 3.4E-08 41.3 1.4 41 62-107 1-41 (41)
17 PF12678 zf-rbx1: RING-H2 zinc 96.4 0.0018 3.9E-08 46.9 1.8 41 61-108 21-73 (73)
18 PF12861 zf-Apc11: Anaphase-pr 96.4 0.0027 5.8E-08 48.2 2.5 33 78-113 50-83 (85)
19 PF13920 zf-C3HC4_3: Zinc fing 96.3 0.0019 4.2E-08 42.9 1.4 46 59-112 2-48 (50)
20 PF11793 FANCL_C: FANCL C-term 96.3 0.0014 3E-08 47.3 0.5 53 59-114 2-68 (70)
21 COG5243 HRD1 HRD ubiquitin lig 96.2 0.0067 1.5E-07 57.2 4.9 50 56-112 284-345 (491)
22 PHA02926 zinc finger-like prot 95.7 0.01 2.2E-07 52.4 3.4 52 56-112 167-230 (242)
23 KOG0828 Predicted E3 ubiquitin 95.4 0.013 2.8E-07 56.9 3.4 54 54-113 566-635 (636)
24 KOG0802 E3 ubiquitin ligase [P 95.3 0.011 2.4E-07 57.0 2.7 48 57-111 289-340 (543)
25 KOG0317 Predicted E3 ubiquitin 95.1 0.028 6.1E-07 51.1 4.4 53 54-114 234-286 (293)
26 smart00504 Ubox Modified RING 94.6 0.038 8.3E-07 37.5 3.0 46 60-113 2-47 (63)
27 PF13923 zf-C3HC4_2: Zinc fing 94.4 0.017 3.6E-07 36.6 0.8 38 62-107 1-39 (39)
28 KOG1493 Anaphase-promoting com 93.3 0.028 6E-07 42.3 0.4 49 61-113 22-82 (84)
29 COG5219 Uncharacterized conser 92.9 0.029 6.2E-07 58.3 -0.0 53 57-112 1467-1523(1525)
30 PF14634 zf-RING_5: zinc-RING 92.1 0.11 2.4E-06 33.7 2.0 42 61-109 1-44 (44)
31 KOG0823 Predicted E3 ubiquitin 91.9 0.21 4.6E-06 44.2 4.0 52 55-112 43-95 (230)
32 COG5194 APC11 Component of SCF 91.6 0.11 2.4E-06 39.4 1.7 27 85-113 56-82 (88)
33 TIGR00599 rad18 DNA repair pro 90.7 0.19 4.1E-06 47.6 2.7 49 57-113 24-72 (397)
34 KOG0827 Predicted E3 ubiquitin 90.5 0.23 4.9E-06 47.3 3.0 45 59-108 4-52 (465)
35 KOG1785 Tyrosine kinase negati 90.2 0.11 2.4E-06 49.7 0.7 50 57-112 367-416 (563)
36 PF05883 Baculo_RING: Baculovi 89.4 0.21 4.6E-06 40.9 1.7 41 57-99 24-69 (134)
37 PF05290 Baculo_IE-1: Baculovi 86.6 0.53 1.1E-05 38.7 2.4 56 58-114 79-134 (140)
38 KOG2930 SCF ubiquitin ligase, 82.8 0.86 1.9E-05 36.2 1.9 26 85-112 83-108 (114)
39 PF14570 zf-RING_4: RING/Ubox 81.2 1.1 2.4E-05 30.6 1.8 45 62-112 1-48 (48)
40 KOG0804 Cytoplasmic Zn-finger 80.7 0.59 1.3E-05 45.1 0.4 48 56-112 172-222 (493)
41 PLN02189 cellulose synthase 80.4 1.4 3E-05 46.4 3.0 52 57-112 32-87 (1040)
42 KOG4445 Uncharacterized conser 78.7 1.5 3.2E-05 40.8 2.2 54 56-114 112-188 (368)
43 PLN02436 cellulose synthase A 77.1 2 4.3E-05 45.4 3.0 52 57-112 34-89 (1094)
44 PF15227 zf-C3HC4_4: zinc fing 74.9 1.3 2.8E-05 28.8 0.6 40 62-107 1-42 (42)
45 KOG4265 Predicted E3 ubiquitin 74.6 3.6 7.7E-05 38.6 3.6 47 55-112 286-336 (349)
46 KOG1002 Nucleotide excision re 72.8 2.6 5.7E-05 41.9 2.5 59 55-119 532-593 (791)
47 TIGR00570 cdk7 CDK-activating 70.9 4.2 9.1E-05 37.5 3.2 49 60-114 4-56 (309)
48 COG5432 RAD18 RING-finger-cont 70.3 2 4.3E-05 39.9 1.0 48 57-112 23-70 (391)
49 PF13445 zf-RING_UBOX: RING-ty 69.6 2.1 4.6E-05 28.2 0.7 38 62-104 1-42 (43)
50 KOG2177 Predicted E3 ubiquitin 67.9 2.5 5.4E-05 34.3 1.0 46 56-109 10-55 (386)
51 PF04564 U-box: U-box domain; 67.8 2.7 5.9E-05 30.0 1.1 46 61-113 6-51 (73)
52 KOG0825 PHD Zn-finger protein 66.8 5.5 0.00012 41.4 3.3 31 75-112 141-171 (1134)
53 PF10367 Vps39_2: Vacuolar sor 62.4 2.7 5.9E-05 30.8 0.2 33 57-94 76-109 (109)
54 PF08746 zf-RING-like: RING-li 61.8 4.5 9.8E-05 26.5 1.1 22 86-107 22-43 (43)
55 KOG1645 RING-finger-containing 61.2 6 0.00013 38.1 2.3 49 59-111 4-55 (463)
56 KOG0287 Postreplication repair 59.8 3.4 7.4E-05 39.1 0.4 47 58-112 22-68 (442)
57 PLN02195 cellulose synthase A 58.5 9.8 0.00021 40.1 3.4 52 58-112 5-59 (977)
58 KOG0320 Predicted E3 ubiquitin 58.4 11 0.00023 32.6 3.1 52 53-111 125-177 (187)
59 PLN02638 cellulose synthase A 56.5 12 0.00025 39.9 3.6 53 57-112 15-70 (1079)
60 KOG1734 Predicted RING-contain 53.7 4.9 0.00011 36.9 0.4 51 57-112 222-281 (328)
61 PF10272 Tmpp129: Putative tra 50.7 18 0.00039 34.0 3.5 35 75-112 306-351 (358)
62 PLN02400 cellulose synthase 47.6 15 0.00032 39.2 2.8 53 57-112 34-89 (1085)
63 PF05191 ADK_lid: Adenylate ki 47.3 8.2 0.00018 24.6 0.5 18 102-119 2-19 (36)
64 PLN02915 cellulose synthase A 46.8 22 0.00048 37.8 3.8 55 56-113 12-69 (1044)
65 PF14569 zf-UDP: Zinc-binding 45.7 23 0.00049 26.8 2.8 54 57-113 7-63 (80)
66 PF07800 DUF1644: Protein of u 43.5 29 0.00064 29.3 3.4 39 59-99 2-49 (162)
67 KOG1039 Predicted E3 ubiquitin 41.3 22 0.00047 33.3 2.6 51 56-111 158-220 (344)
68 PF00301 Rubredoxin: Rubredoxi 38.7 15 0.00033 24.8 0.8 35 102-136 2-39 (47)
69 cd00730 rubredoxin Rubredoxin; 37.3 28 0.00061 23.7 2.0 34 102-135 2-38 (50)
70 KOG2164 Predicted E3 ubiquitin 36.7 31 0.00068 34.0 2.9 49 59-113 186-237 (513)
71 PF13894 zf-C2H2_4: C2H2-type 36.3 14 0.00031 19.5 0.3 11 103-113 2-12 (24)
72 smart00249 PHD PHD zinc finger 36.2 11 0.00025 22.9 -0.1 29 62-93 2-30 (47)
73 KOG1941 Acetylcholine receptor 33.5 22 0.00047 34.4 1.3 48 57-109 363-413 (518)
74 PF10571 UPF0547: Uncharacteri 33.0 22 0.00047 21.2 0.8 13 100-112 13-25 (26)
75 KOG0956 PHD finger protein AF1 31.8 24 0.00052 36.3 1.3 60 57-116 115-186 (900)
76 PF05210 Sprouty: Sprouty prot 30.9 36 0.00078 26.9 1.9 19 75-98 59-77 (108)
77 PF00096 zf-C2H2: Zinc finger, 30.1 20 0.00042 19.4 0.2 11 103-113 2-12 (23)
78 KOG1952 Transcription factor N 30.0 53 0.0012 34.5 3.4 53 56-112 188-247 (950)
79 KOG0801 Predicted E3 ubiquitin 29.9 28 0.00061 30.0 1.2 25 56-80 174-200 (205)
80 KOG3899 Uncharacterized conser 28.9 37 0.00081 31.7 1.9 27 86-112 328-365 (381)
81 PF04641 Rtf2: Rtf2 RING-finge 27.2 59 0.0013 28.6 2.9 50 56-113 110-162 (260)
82 COG1773 Rubredoxin [Energy pro 26.8 45 0.00098 23.5 1.6 35 101-135 3-40 (55)
83 PF10795 DUF2607: Protein of u 25.7 60 0.0013 25.3 2.3 22 172-194 11-32 (99)
84 smart00782 PhnA_Zn_Ribbon PhnA 24.6 46 0.00099 22.5 1.3 22 98-119 4-26 (47)
85 COG5574 PEX10 RING-finger-cont 24.6 88 0.0019 28.6 3.5 51 56-113 212-263 (271)
86 PF04532 DUF587: Protein of un 24.3 27 0.00058 30.7 0.1 18 74-91 105-122 (215)
87 PF09630 DUF2024: Domain of un 24.1 36 0.00079 25.7 0.8 16 54-69 47-62 (81)
88 KOG1428 Inhibitor of type V ad 23.9 76 0.0017 36.1 3.3 53 57-112 3484-3544(3738)
89 KOG0802 E3 ubiquitin ligase [P 22.8 33 0.00071 33.4 0.4 46 56-113 476-521 (543)
90 PF03854 zf-P11: P-11 zinc fin 22.7 40 0.00086 23.4 0.7 28 84-113 20-47 (50)
91 PF04423 Rad50_zn_hook: Rad50 21.4 62 0.0014 21.6 1.5 23 91-113 8-32 (54)
92 PF13956 Ibs_toxin: Toxin Ibs, 21.3 51 0.0011 18.5 0.8 12 177-188 4-15 (19)
93 PF13913 zf-C2HC_2: zinc-finge 21.0 41 0.00089 19.5 0.4 12 102-113 3-14 (25)
94 KOG1100 Predicted E3 ubiquitin 20.5 56 0.0012 28.2 1.4 21 58-79 157-177 (207)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=99.93 E-value=3.2e-27 Score=186.88 Aligned_cols=83 Identities=46% Similarity=0.859 Sum_probs=80.2
Q ss_pred cCccCCCCcccccc---ccCCCceeeccccCCCCeeEEEeeccccccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhh
Q 028874 113 PGYTAPPPLFRYGG---NFRANWEISGRDLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVAITVHLSLTLFG 189 (202)
Q Consensus 113 ~~yt~p~~~~~~~~---~~~~~w~~~~~dl~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~crs~ai~~~~llllr~ 189 (202)
|+||+|||+++.++ ++|++|+++++|++ |+++++|+++|++|+++||+||+.++++|++||||+|||||+||||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~-~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllRh 79 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLR-DPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLRH 79 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCcc-chhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 68999999999987 89999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhhheee
Q 028874 190 VRSLVSI 196 (202)
Q Consensus 190 ~i~vv~~ 196 (202)
+++|++.
T Consensus 80 al~l~~~ 86 (118)
T PF12428_consen 80 ALALVTG 86 (118)
T ss_pred HHHHhcC
Confidence 9999984
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.73 E-value=1.8e-18 Score=142.97 Aligned_cols=68 Identities=24% Similarity=0.546 Sum_probs=56.8
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccCccCCCCcccc
Q 028874 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRY 124 (202)
Q Consensus 54 ~~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~yt~p~~~~~~ 124 (202)
+.+...+.||||+++++ .+.+||.|+||+||||++||++|++.++...||+|+++|.... ...|+.+|
T Consensus 3 ~~s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~-~~kpl~~W 70 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK-NYKKCTKW 70 (162)
T ss_pred CcCCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE-ecCCCccc
Confidence 45667889999998864 4679999999999999999999999999999999999998663 22344444
No 3
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.71 E-value=3.1e-18 Score=116.26 Aligned_cols=48 Identities=58% Similarity=1.342 Sum_probs=44.0
Q ss_pred eeeEeccC-CCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccc
Q 028874 61 ECRICHEE-DEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (202)
Q Consensus 61 ~CRIC~e~-~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk 108 (202)
+||||+++ +++++++.||.|+|+++|||+.||++|+.+++..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 3567899999999999999999999999999999999996
No 4
>PHA02862 5L protein; Provisional
Probab=99.71 E-value=5.4e-18 Score=138.57 Aligned_cols=54 Identities=30% Similarity=0.692 Sum_probs=48.9
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028874 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
...||||++++++. ++||.|+||+||||++||++|++.+++..||+|+++|..+
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 35899999987544 6999999999999999999999999999999999999754
No 5
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.68 E-value=3.7e-18 Score=148.29 Aligned_cols=141 Identities=30% Similarity=0.440 Sum_probs=104.0
Q ss_pred CCCCCCCCeeeEeccCCCCC---CcccccccCCCCccccHHHHHHHHHhcCCccccccccccccCccCCCCcccccc---
Q 028874 53 GSSPSKLVECRICHEEDEDS---NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGG--- 126 (202)
Q Consensus 53 ~~~~~~~~~CRIC~e~~~~~---~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~yt~p~~~~~~~~--- 126 (202)
.+.++....||||+++.+.. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|.+.++.+++...+..
T Consensus 72 ~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~ 151 (323)
T KOG1609|consen 72 EESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRS 151 (323)
T ss_pred ccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhh
Confidence 33456678999999987532 699999999999999999999999999999999999999998888776665433
Q ss_pred ccCCCceeecc-ccCCCCeeEEEeeccccccCCCCCcccCCCCCcchHHHHHH-HHHHHHHHHhhhhhhe
Q 028874 127 NFRANWEISGR-DLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVA-ITVHLSLTLFGVRSLV 194 (202)
Q Consensus 127 ~~~~~w~~~~~-dl~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~crs~a-i~~~~llllr~~i~vv 194 (202)
...+.|..... .++ ++..+++.-+...++...++++....+..+..+++++ +.+.++.++++.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (323)
T KOG1609|consen 152 GALSERTLSGMILLK-VALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIF 220 (323)
T ss_pred Hhhhheeeehhhhhh-hhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHH
Confidence 12233444443 333 6667777777777777667777666666667777777 6666666666665543
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.68 E-value=5.8e-18 Score=114.04 Aligned_cols=46 Identities=52% Similarity=1.276 Sum_probs=37.6
Q ss_pred eeEeccCCCC-CCcccccccCCCCccccHHHHHHHHHhcCCcccccc
Q 028874 62 CRICHEEDED-SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (202)
Q Consensus 62 CRIC~e~~~~-~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEIC 107 (202)
||||++++++ ++|++||.|+|+++|||++||++|+..++..+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998754 469999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.2e-14 Score=126.75 Aligned_cols=67 Identities=31% Similarity=0.737 Sum_probs=57.7
Q ss_pred CCCCCCCeeeEeccCCCCCC---cccccccCCCCccccHHHHHHHHHhcC------CccccccccccccCccCCCC
Q 028874 54 SSPSKLVECRICHEEDEDSN---MEIPCSCCGSLKYAHRKCVQRWCNEKG------DTTCEICREQYNPGYTAPPP 120 (202)
Q Consensus 54 ~~~~~~~~CRIC~e~~~~~~---Li~PC~C~GslkyvH~~CL~rW~~~kg------~~~CEICk~~y~~~yt~p~~ 120 (202)
++.+.++.||||+..++|+. ++.||.|+|+.|+||+.||.+|+.+|. ...|.+|+.+|...|+..-+
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 45567899999999988764 799999999999999999999999874 58999999999988765443
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.47 E-value=2.2e-14 Score=141.47 Aligned_cols=54 Identities=43% Similarity=1.056 Sum_probs=50.8
Q ss_pred CCeeeEeccCC-CCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 59 LVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~-~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
...||||+.++ +++||.+||+|+||+||+|++||..|...+++++|+|||++|+
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 37899999887 6789999999999999999999999999999999999999986
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.52 E-value=2.5e-05 Score=50.77 Aligned_cols=41 Identities=39% Similarity=1.066 Sum_probs=31.4
Q ss_pred eeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHhcCCccccccc
Q 028874 61 ECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (202)
Q Consensus 61 ~CRIC~e~~~--~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk 108 (202)
.|-||+++-. +.....||+ +..|.+|+++|++.++ .|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 6889998853 344566653 8999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00032 Score=64.91 Aligned_cols=49 Identities=29% Similarity=0.723 Sum_probs=40.5
Q ss_pred CeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028874 60 VECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 60 ~~CRIC~e~~~~~--~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
..|-||+|+..++ --+.||+ +..|..|+..|+... .+.|++||+.-...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCC
Confidence 7999999997533 3479998 789999999999887 56799999976543
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.05 E-value=0.00052 Score=42.44 Aligned_cols=44 Identities=36% Similarity=0.949 Sum_probs=33.1
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccc
Q 028874 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (202)
Q Consensus 61 ~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~ 110 (202)
.|-||++...+.....||. +.+|..|+.+|+.. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764333455575 57899999999986 56689999875
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.98 E-value=0.00075 Score=57.99 Aligned_cols=51 Identities=16% Similarity=0.591 Sum_probs=40.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--------------cCCccccccccccc
Q 028874 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--------------KGDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--------------kg~~~CEICk~~y~ 112 (202)
..+..+|-||++... .+.++||. +.....||.+|+.. ++...|++|+..+.
T Consensus 15 ~~~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 15 SGGDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCCccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 345689999998764 47888876 78899999999863 24568999999885
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.97 E-value=0.0006 Score=60.13 Aligned_cols=49 Identities=35% Similarity=0.710 Sum_probs=37.2
Q ss_pred CCCCeeeEeccCCCCC-------CcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEEDEDS-------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~-------~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
....+|-||++.-.+. ....||. +..|..|+.+|+..+ .+|++|+.+|.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEee
Confidence 3467999999974322 1345665 789999999999754 58999999886
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0011 Score=60.89 Aligned_cols=50 Identities=34% Similarity=0.738 Sum_probs=40.3
Q ss_pred CCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHH-hcCCcccccccccccc
Q 028874 57 SKLVECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~--~~~~Li~PC~C~GslkyvH~~CL~rW~~-~kg~~~CEICk~~y~~ 113 (202)
....+|-||.+.- .+.-++.||. +-.|..|+.+|+. .|. .|++|+.+.+|
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCCCC
Confidence 3458999999875 3456899998 7899999999998 454 79999987653
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.49 E-value=0.0025 Score=37.88 Aligned_cols=39 Identities=38% Similarity=1.026 Sum_probs=29.9
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccc
Q 028874 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (202)
Q Consensus 62 CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEIC 107 (202)
|.||++.. ......||. +..|..|+.+|+. ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 356778877 5689999999998 455678776
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.43 E-value=0.0016 Score=41.25 Aligned_cols=41 Identities=34% Similarity=0.944 Sum_probs=34.4
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccc
Q 028874 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (202)
Q Consensus 62 CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEIC 107 (202)
|.||++...+.....||. +.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 678988776544589987 78999999999998888889887
No 17
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.41 E-value=0.0018 Score=46.89 Aligned_cols=41 Identities=37% Similarity=0.918 Sum_probs=28.8
Q ss_pred eeeEeccCCCC-----------CC-cccccccCCCCccccHHHHHHHHHhcCCccccccc
Q 028874 61 ECRICHEEDED-----------SN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (202)
Q Consensus 61 ~CRIC~e~~~~-----------~~-Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk 108 (202)
.|-||+++-.+ -+ ...+|+ +..|..||.+|++.+. +|++|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 49999877521 11 234554 7899999999996655 999995
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.35 E-value=0.0027 Score=48.16 Aligned_cols=33 Identities=21% Similarity=0.750 Sum_probs=27.3
Q ss_pred cccCCCCccccHHHHHHHHHhc-CCcccccccccccc
Q 028874 78 CSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (202)
Q Consensus 78 C~C~GslkyvH~~CL~rW~~~k-g~~~CEICk~~y~~ 113 (202)
+.|+ +-+|..||.+|++.. .+..|++|+++|+.
T Consensus 50 g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 50 GKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4564 789999999999874 56799999999874
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.30 E-value=0.0019 Score=42.94 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=36.1
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHhcCCccccccccccc
Q 028874 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
...|.||++... +....||+ +. +-..|+.+|++ +...|++|+++++
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 357999998754 46788997 45 89999999998 6679999998875
No 20
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.26 E-value=0.0014 Score=47.32 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=24.9
Q ss_pred CCeeeEeccCCC--CCCcccc---cccCCCCccccHHHHHHHHHhcC---------CccccccccccccC
Q 028874 59 LVECRICHEEDE--DSNMEIP---CSCCGSLKYAHRKCVQRWCNEKG---------DTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~--~~~Li~P---C~C~GslkyvH~~CL~rW~~~kg---------~~~CEICk~~y~~~ 114 (202)
..+|.||++... +.....- ..|+ +..|..||.+|+.... .-.|+.|+.+.+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999998642 2222233 4664 6899999999997531 13699999887643
No 21
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0067 Score=57.20 Aligned_cols=50 Identities=30% Similarity=0.751 Sum_probs=38.7
Q ss_pred CCCCCeeeEeccCC--CC----------CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 56 PSKLVECRICHEED--ED----------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~--~~----------~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
......|-||.++- .+ .|-..||+ +..|-.||+.|+..+. +|+||+.+..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCccc
Confidence 34567999999882 11 23578987 6899999999997754 8999999843
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=95.67 E-value=0.01 Score=52.44 Aligned_cols=52 Identities=29% Similarity=0.616 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCC------C--CCcccccccCCCCccccHHHHHHHHHhc----CCccccccccccc
Q 028874 56 PSKLVECRICHEEDE------D--SNMEIPCSCCGSLKYAHRKCVQRWCNEK----GDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~------~--~~Li~PC~C~GslkyvH~~CL~rW~~~k----g~~~CEICk~~y~ 112 (202)
.+...+|-||++.-- + -.+..||. +.....|+.+|.+.+ ....|++|+..|.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456789999998731 1 13567776 789999999999864 2467999999997
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.013 Score=56.94 Aligned_cols=54 Identities=26% Similarity=0.656 Sum_probs=41.4
Q ss_pred CCCCCCCeeeEeccCCC----------------CCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 54 SSPSKLVECRICHEEDE----------------DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 54 ~~~~~~~~CRIC~e~~~----------------~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.-.+....|-||...-+ .+.+.+||. +..|+.||++|.+..+ ..|+.|+.+..+
T Consensus 566 ~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLPp 635 (636)
T KOG0828|consen 566 AFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLPP 635 (636)
T ss_pred chhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCCC
Confidence 34677899999987631 135788998 7999999999998432 689999887653
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.011 Score=57.05 Aligned_cols=48 Identities=29% Similarity=0.681 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCC----CcccccccCCCCccccHHHHHHHHHhcCCcccccccccc
Q 028874 57 SKLVECRICHEEDEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~----~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y 111 (202)
.....|.||.|+.... +-..||. +..|..||++|++. ..+|++|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 3467999999986432 6788887 78999999999988 45999999944
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.028 Score=51.05 Aligned_cols=53 Identities=32% Similarity=0.894 Sum_probs=43.9
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028874 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 54 ~~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
..+.....|-+|++.-. ++--+||+ +..=-.|++.|+++|. .|++|+..++|.
T Consensus 234 ~i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred cCCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 34678899999998864 46679998 6777899999999887 499999999864
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.60 E-value=0.038 Score=37.46 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=36.8
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 60 VECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 60 ~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
-.|.||.+.-. ++...||+ +.+-+.|+.+|+.. ..+|++|++++..
T Consensus 2 ~~Cpi~~~~~~-~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMK-DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCC-CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCCh
Confidence 36889987765 47888874 67899999999987 4589999988853
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.40 E-value=0.017 Score=36.58 Aligned_cols=38 Identities=26% Similarity=0.877 Sum_probs=28.7
Q ss_pred eeEeccCCCCCC-cccccccCCCCccccHHHHHHHHHhcCCcccccc
Q 028874 62 CRICHEEDEDSN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (202)
Q Consensus 62 CRIC~e~~~~~~-Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEIC 107 (202)
|.||++...+ + ...||+ +...+.|+++|++. ...|++|
T Consensus 1 C~iC~~~~~~-~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC-cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 6788776654 5 578887 78999999999987 3688887
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.028 Score=42.30 Aligned_cols=49 Identities=27% Similarity=0.704 Sum_probs=35.9
Q ss_pred eeeEeccCC-----------CCCCcccccccCCCCccccHHHHHHHHHhc-CCcccccccccccc
Q 028874 61 ECRICHEED-----------EDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (202)
Q Consensus 61 ~CRIC~e~~-----------~~~~Li~PC~C~GslkyvH~~CL~rW~~~k-g~~~CEICk~~y~~ 113 (202)
.|-||..+. ++-||+-- .| .+..|..|+.+|++.+ ....|+.|+++|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C---~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YC---LHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HH---HHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 677776553 23356544 55 3789999999999976 46799999999874
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.95 E-value=0.029 Score=58.29 Aligned_cols=53 Identities=26% Similarity=0.725 Sum_probs=38.2
Q ss_pred CCCCeeeEeccCCC--CCCc-ccccc-cCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEEDE--DSNM-EIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~--~~~L-i~PC~-C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
+...+|-||..--. +..+ -.-|. |+ .-.|-.||-+|+.+++..+|++|+.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45678999986532 2222 12232 33 4589999999999999999999997764
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.12 E-value=0.11 Score=33.73 Aligned_cols=42 Identities=29% Similarity=0.665 Sum_probs=34.3
Q ss_pred eeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccc
Q 028874 61 ECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (202)
Q Consensus 61 ~CRIC~e~~--~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~ 109 (202)
.|-||++.. +..+++.+|. +.+..+|++++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898876 3357899997 789999999998 67789999974
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.21 Score=44.16 Aligned_cols=52 Identities=17% Similarity=0.619 Sum_probs=42.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc-CCccccccccccc
Q 028874 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYN 112 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k-g~~~CEICk~~y~ 112 (202)
.+...-.|-||++...| +.+++|. +..==-||-+|+..+ +...|++||.+..
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 45678899999998764 8999998 566678999999876 4667799998764
No 32
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.59 E-value=0.11 Score=39.43 Aligned_cols=27 Identities=30% Similarity=0.755 Sum_probs=24.2
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 028874 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 85 kyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+..|..|+.||++.|+ .|+++.++|+.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 6799999999999977 89999999873
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.66 E-value=0.19 Score=47.56 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=39.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.....|.||++... .+.+.||. +.....|+.+|+..++ .|++|+..+..
T Consensus 24 e~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~~--~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQP--KCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCCC--CCCCCCCcccc
Confidence 45679999988764 46788987 7888999999997653 89999998863
No 34
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.23 Score=47.29 Aligned_cols=45 Identities=27% Similarity=0.770 Sum_probs=32.1
Q ss_pred CCeeeEeccCCC-CCCc--ccccccCCCCccccHHHHHHHHHhcCC-ccccccc
Q 028874 59 LVECRICHEEDE-DSNM--EIPCSCCGSLKYAHRKCVQRWCNEKGD-TTCEICR 108 (202)
Q Consensus 59 ~~~CRIC~e~~~-~~~L--i~PC~C~GslkyvH~~CL~rW~~~kg~-~~CEICk 108 (202)
...|.||-+.-+ +.++ +.-|. +.+|..||++|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 568999944332 2222 44444 68999999999987654 6999998
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.19 E-value=0.11 Score=49.69 Aligned_cols=50 Identities=30% Similarity=0.721 Sum_probs=41.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
+....|.||-+.+.+ .-+.||. +..-..||..|..+.+...|+.|+.+.+
T Consensus 367 sTFeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 367 STFELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred chHHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 345689999777653 5578997 5777899999999998999999998886
No 36
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.38 E-value=0.21 Score=40.86 Aligned_cols=41 Identities=29% Similarity=0.612 Sum_probs=28.7
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCC---ccccHHHHHHHHHhc
Q 028874 57 SKLVECRICHEEDED--SNMEIPCSCCGSL---KYAHRKCVQRWCNEK 99 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~--~~Li~PC~C~Gsl---kyvH~~CL~rW~~~k 99 (202)
....+|+||++.-.+ +-...+| .|++ |..|..|++||-+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~--~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTD--GGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEec--CCeehHHHHHHHHHHHHHHhhc
Confidence 457899999988543 4444554 4555 459999999996544
No 37
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.62 E-value=0.53 Score=38.75 Aligned_cols=56 Identities=25% Similarity=0.626 Sum_probs=46.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028874 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
..-+|-||+|...|..+..|=.|.|. +.---=|.+-|--.+--..|++|+..|+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 57799999999888899999999983 445555678898888888999999999843
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=0.86 Score=36.16 Aligned_cols=26 Identities=19% Similarity=0.657 Sum_probs=23.0
Q ss_pred ccccHHHHHHHHHhcCCccccccccccc
Q 028874 85 KYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 85 kyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
+-.|..|+.||++.++ .|++|.++..
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 6799999999998876 8999998875
No 39
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=81.17 E-value=1.1 Score=30.63 Aligned_cols=45 Identities=29% Similarity=0.671 Sum_probs=19.7
Q ss_pred eeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHhc--CCccccccccccc
Q 028874 62 CRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYN 112 (202)
Q Consensus 62 CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~k--g~~~CEICk~~y~ 112 (202)
|.+|.++.+ ...-..||.|. ++-|+.=|.+-+ ++-.|+-|+.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 456666542 33457899994 455665566544 4789999999985
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.73 E-value=0.59 Score=45.10 Aligned_cols=48 Identities=25% Similarity=0.703 Sum_probs=34.7
Q ss_pred CCCCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 56 PSKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~---~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..+.+.|-+|+|.-++ +.+-.+|. +-.|-.|+++|-.. +|++|++--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 5789999999987532 34556665 67999999999654 5666665443
No 41
>PLN02189 cellulose synthase
Probab=80.44 E-value=1.4 Score=46.38 Aligned_cols=52 Identities=25% Similarity=0.638 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCC---CCCCcccccc-cCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEED---EDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~---~~~~Li~PC~-C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.....|+||-++- .++.+...|. |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 3456999998873 4566778888 63 23788998 4445568899999999998
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.66 E-value=1.5 Score=40.79 Aligned_cols=54 Identities=26% Similarity=0.504 Sum_probs=38.2
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHhc---------------------CCccccccccccc
Q 028874 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEK---------------------GDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~--~Li~PC~C~GslkyvH~~CL~rW~~~k---------------------g~~~CEICk~~y~ 112 (202)
.....+|-||+-...++ ..+++|. +|.|..||.|.+++- -...|++|..+.+
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34456677776554333 4678887 899999999998641 1467999998876
Q ss_pred cC
Q 028874 113 PG 114 (202)
Q Consensus 113 ~~ 114 (202)
..
T Consensus 187 ~e 188 (368)
T KOG4445|consen 187 IE 188 (368)
T ss_pred cc
Confidence 44
No 43
>PLN02436 cellulose synthase A
Probab=77.08 E-value=2 Score=45.42 Aligned_cols=52 Identities=25% Similarity=0.667 Sum_probs=39.5
Q ss_pred CCCCeeeEeccC---CCCCCcccccc-cCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEE---DEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~---~~~~~Li~PC~-C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.....|+||-++ +.++.+...|+ |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 456699999887 34667778888 52 23788898 4445568899999999998
No 44
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=74.94 E-value=1.3 Score=28.77 Aligned_cols=40 Identities=28% Similarity=0.715 Sum_probs=26.3
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCC--cccccc
Q 028874 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGD--TTCEIC 107 (202)
Q Consensus 62 CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~--~~CEIC 107 (202)
|-||++--. +|...+|+ +-.=+.||++|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 567776654 47788886 56778999999987644 588877
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.62 E-value=3.6 Score=38.57 Aligned_cols=47 Identities=30% Similarity=0.749 Sum_probs=31.6
Q ss_pred CCCCCCeeeEeccCCCCCCccccc----ccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 55 SPSKLVECRICHEEDEDSNMEIPC----SCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC----~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..+..++|=||+.+.-+ -++.|| -|+ .|.+...-. ...|+||++.+.
T Consensus 286 ~~~~gkeCVIClse~rd-t~vLPCRHLCLCs--------~Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSESRD-TVVLPCRHLCLCS--------GCAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCCcc-eEEecchhhehhH--------hHHHHHHHh--hcCCCccccchH
Confidence 34668999999988753 455665 454 455554422 346999999886
No 46
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=72.84 E-value=2.6 Score=41.91 Aligned_cols=59 Identities=25% Similarity=0.642 Sum_probs=46.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh---cCCccccccccccccCccCCC
Q 028874 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPGYTAPP 119 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~---kg~~~CEICk~~y~~~yt~p~ 119 (202)
......+|-+|+++.++ ++++-|. +-.-+.|+..+++. ..+.+|+.|.-......+.|.
T Consensus 532 enk~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~a 593 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPA 593 (791)
T ss_pred cccCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccchh
Confidence 34567899999998764 7888887 46678999999875 457999999999887766663
No 47
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.91 E-value=4.2 Score=37.50 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=35.6
Q ss_pred CeeeEeccCCCCC----CcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028874 60 VECRICHEEDEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 60 ~~CRIC~e~~~~~----~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
..|-||....--+ -+++||. +-+=..|+.+.+. ++...|+.|+..++..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 5799999874222 2677775 5666799999764 3667999999988754
No 48
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=70.32 E-value=2 Score=39.85 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=37.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.....||||.+--. -++++||+ +-.-.-|+.+-++... .|++|..++.
T Consensus 23 Ds~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 34678999987654 47889987 4566789998886654 8999998875
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=69.60 E-value=2.1 Score=28.23 Aligned_cols=38 Identities=29% Similarity=0.760 Sum_probs=20.6
Q ss_pred eeEeccCC-CCC-CcccccccCCCCccccHHHHHHHHHhc--CCccc
Q 028874 62 CRICHEED-EDS-NMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTC 104 (202)
Q Consensus 62 CRIC~e~~-~~~-~Li~PC~C~GslkyvH~~CL~rW~~~k--g~~~C 104 (202)
|-||.+-. +++ +++.||. +-+=++||+++.+.+ +..+|
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kC 42 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKC 42 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeC
Confidence 55676632 223 6889977 578899999999875 45555
No 50
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=2.5 Score=34.34 Aligned_cols=46 Identities=28% Similarity=0.669 Sum_probs=37.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccc
Q 028874 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~ 109 (202)
..+...|.||++...+ +.+.||. +.+=+.|+..+.. ....|+.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~-p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE-PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc-Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4567899999998754 3788887 6777899999988 7789999994
No 51
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=67.82 E-value=2.7 Score=29.99 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=30.5
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 61 ~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.|-|+++--. ++.+.|++ +..=+.|+++|+.. +..+|++|++....
T Consensus 6 ~CpIt~~lM~-dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPITGELMR-DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTTSSB-S-SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred CCcCcCcHhh-CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 4556654443 47788754 68899999999988 56689999887764
No 52
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.77 E-value=5.5 Score=41.38 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=25.1
Q ss_pred ccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 75 EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 75 i~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..+|.| |+|..||..|...- .+|++|+.+|-
T Consensus 141 ~k~c~H-----~FC~~Ci~sWsR~a--qTCPiDR~EF~ 171 (1134)
T KOG0825|consen 141 EKHTAH-----YFCEECVGSWSRCA--QTCPVDRGEFG 171 (1134)
T ss_pred cccccc-----ccHHHHhhhhhhhc--ccCchhhhhhh
Confidence 345665 99999999998654 48999999995
No 53
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=62.39 E-value=2.7 Score=30.84 Aligned_cols=33 Identities=24% Similarity=0.700 Sum_probs=23.8
Q ss_pred CCCCeeeEeccCCCCCC-cccccccCCCCccccHHHHHH
Q 028874 57 SKLVECRICHEEDEDSN-MEIPCSCCGSLKYAHRKCVQR 94 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~-Li~PC~C~GslkyvH~~CL~r 94 (202)
.....|.+|...-..+. .+-||+ ..+|..|++|
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 34567999988764443 467875 6899999864
No 54
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=61.76 E-value=4.5 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.730 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHhcCCcccccc
Q 028874 86 YAHRKCVQRWCNEKGDTTCEIC 107 (202)
Q Consensus 86 yvH~~CL~rW~~~kg~~~CEIC 107 (202)
-+|..|+++++..+.+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999998877789876
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.20 E-value=6 Score=38.07 Aligned_cols=49 Identities=18% Similarity=0.581 Sum_probs=36.8
Q ss_pred CCeeeEeccCCC---CCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccc
Q 028874 59 LVECRICHEEDE---DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (202)
Q Consensus 59 ~~~CRIC~e~~~---~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y 111 (202)
...|-||+++-. +..++.| .|. +..-..|+++|+..+....|++|+.+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChh
Confidence 457999998842 3356666 332 578899999999877788999998753
No 56
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=59.78 E-value=3.4 Score=39.07 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=37.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..-.|-||++-.. -++++||+ +-.-.-|+...++.+ ..|+.|..+|.
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~--p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYK--PQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccC--CCCCceecccc
Confidence 3568999998765 48999976 455678888888765 48999998885
No 57
>PLN02195 cellulose synthase A
Probab=58.48 E-value=9.8 Score=40.06 Aligned_cols=52 Identities=21% Similarity=0.533 Sum_probs=34.5
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 58 KLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
....|+||-++- .++.+..-|+=.| --|=+.|.+ .=.+-|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchhh-hhhhcCCccCCccCCccc
Confidence 356899998763 3444545554332 237788873 333458899999999998
No 58
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.43 E-value=11 Score=32.62 Aligned_cols=52 Identities=17% Similarity=0.468 Sum_probs=37.3
Q ss_pred CCCCCCCCeeeEeccCCCCC-CcccccccCCCCccccHHHHHHHHHhcCCcccccccccc
Q 028874 53 GSSPSKLVECRICHEEDEDS-NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (202)
Q Consensus 53 ~~~~~~~~~CRIC~e~~~~~-~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y 111 (202)
+..++...-|-||++..++. +.-+=|+ +..=.+|++.-+ |....|++|+...
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~al--k~~~~CP~C~kkI 177 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDAL--KNTNKCPTCRKKI 177 (187)
T ss_pred ccccccccCCCceecchhhccccccccc-----hhHHHHHHHHHH--HhCCCCCCccccc
Confidence 34456778999999987643 3445555 567788888877 4567999999744
No 59
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=56.55 E-value=12 Score=39.94 Aligned_cols=53 Identities=23% Similarity=0.628 Sum_probs=35.9
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.....|+||-++- .++.+..-|+=.| --|=+.|.+ .=.+-|+..|+.||++|+
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 3456999998773 3455555555332 237788873 333457899999999998
No 60
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.72 E-value=4.9 Score=36.89 Aligned_cols=51 Identities=24% Similarity=0.699 Sum_probs=37.2
Q ss_pred CCCCeeeEeccCC-----CC----CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEED-----ED----SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~-----~~----~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.+...|-+|-..- ++ +.-..-|+ +..|.-|+.-|+.-.++.+|+-||..-.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4566888885441 22 22234454 6899999999999888899999998765
No 61
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.67 E-value=18 Score=34.02 Aligned_cols=35 Identities=23% Similarity=0.714 Sum_probs=25.8
Q ss_pred ccccccCCCCccccHHHHHHHHHhc-----------CCccccccccccc
Q 028874 75 EIPCSCCGSLKYAHRKCVQRWCNEK-----------GDTTCEICREQYN 112 (202)
Q Consensus 75 i~PC~C~GslkyvH~~CL~rW~~~k-----------g~~~CEICk~~y~ 112 (202)
-.+|.|+- --=..|+-||+.++ |+..|+.|+..|=
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 35677752 23478999999875 4689999998884
No 62
>PLN02400 cellulose synthase
Probab=47.60 E-value=15 Score=39.16 Aligned_cols=53 Identities=23% Similarity=0.623 Sum_probs=35.0
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028874 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.....|+||-++- .++.+..-|.=.| --|=|.|.+ .=.+-|+..|+.||++|+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCC--Cccccchhh-eecccCCccCcccCCccc
Confidence 4566999998773 3455555555332 236677752 222347899999999998
No 63
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=47.35 E-value=8.2 Score=24.59 Aligned_cols=18 Identities=22% Similarity=0.659 Sum_probs=13.8
Q ss_pred ccccccccccccCccCCC
Q 028874 102 TTCEICREQYNPGYTAPP 119 (202)
Q Consensus 102 ~~CEICk~~y~~~yt~p~ 119 (202)
.+|+.|+..|...|.+|.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~ 19 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPK 19 (36)
T ss_dssp EEETTTTEEEETTTB--S
T ss_pred cCcCCCCCccccccCCCC
Confidence 479999999998887764
No 64
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.84 E-value=22 Score=37.83 Aligned_cols=55 Identities=25% Similarity=0.692 Sum_probs=36.7
Q ss_pred CCCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 56 PSKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.-....|.||-++- .++.+..-|+=.| --|=+.|. ..=.+-|+..|+.||++|+-
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCC--Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 34677899998773 3445555554332 23777887 33344578999999999983
No 65
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.74 E-value=23 Score=26.77 Aligned_cols=54 Identities=22% Similarity=0.567 Sum_probs=22.2
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+...|.||-+.- .++.+..-|.=.+ --|=+.|.+-=.+ -|...|..|+.+|+.
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~--fPvCr~CyEYErk-eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA--FPVCRPCYEYERK-EGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHH-TS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC--CccchhHHHHHhh-cCcccccccCCCccc
Confidence 3567899997763 3455555555332 2477888765443 367899999999974
No 66
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=43.48 E-value=29 Score=29.34 Aligned_cols=39 Identities=28% Similarity=0.658 Sum_probs=25.0
Q ss_pred CCeeeEeccCCCCC------Cccccc---ccCCCCccccHHHHHHHHHhc
Q 028874 59 LVECRICHEEDEDS------NMEIPC---SCCGSLKYAHRKCVQRWCNEK 99 (202)
Q Consensus 59 ~~~CRIC~e~~~~~------~Li~PC---~C~GslkyvH~~CL~rW~~~k 99 (202)
...|-||++-.-.. .-...| -|.. .|-|..||.+..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 46799998875211 112233 2554 588999999998753
No 67
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=22 Score=33.28 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=36.0
Q ss_pred CCCCCeeeEeccCCCCCC-----c-c-cccccCCCCccccHHHHHHHHHhcC-----Ccccccccccc
Q 028874 56 PSKLVECRICHEEDEDSN-----M-E-IPCSCCGSLKYAHRKCVQRWCNEKG-----DTTCEICREQY 111 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~-----L-i-~PC~C~GslkyvH~~CL~rW~~~kg-----~~~CEICk~~y 111 (202)
....+.|-||++...+.. + + .+|. +..=.+|+.+|-..+. ...|++|+..-
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 366899999998864322 2 2 3454 4555789999997665 68999998754
No 68
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=38.69 E-value=15 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=18.6
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCceeec
Q 028874 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (202)
Q Consensus 102 ~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (202)
..|.+|++.|.+..--|..-..-|. ++.++|.-+.
T Consensus 2 y~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~~w~CP~ 39 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDPENGIPPGTPFEDLPDDWVCPV 39 (47)
T ss_dssp EEETTTSBEEETTTBBGGGTB-TT--GGGS-TT-B-TT
T ss_pred cCCCCCCEEEcCCcCCcccCcCCCCCHHHCCCCCcCcC
Confidence 3699999999877544432222232 4566776543
No 69
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=37.30 E-value=28 Score=23.71 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=19.8
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCceee
Q 028874 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 102 ~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
..|.+|++.|.+..--|..-..-|. ++..+|.-+
T Consensus 2 y~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w~CP 38 (50)
T cd00730 2 YECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCP 38 (50)
T ss_pred cCCCCCCeEECCCCCCcccCcCCCCCHhHCCCCCCCC
Confidence 4799999999876443322222232 345566544
No 70
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.69 E-value=31 Score=33.96 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=35.4
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh---cCCcccccccccccc
Q 028874 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNP 113 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~---kg~~~CEICk~~y~~ 113 (202)
..+|-||+++..- +..+-|+ +..=-.||.+.++. ++-..|+||...+.+
T Consensus 186 ~~~CPICL~~~~~-p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc-ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999998754 3334355 45556787776654 467899999988876
No 71
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=36.27 E-value=14 Score=19.47 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=7.3
Q ss_pred ccccccccccc
Q 028874 103 TCEICREQYNP 113 (202)
Q Consensus 103 ~CEICk~~y~~ 113 (202)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 59999998863
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=33.53 E-value=22 Score=34.44 Aligned_cols=48 Identities=27% Similarity=0.672 Sum_probs=38.3
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccc
Q 028874 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (202)
Q Consensus 57 ~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~ 109 (202)
+.+-.|-.|-+.- +++---.||+ +..|.+|++..+..+++..|+-|+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4567899997653 2233358998 7999999999999999999999983
No 74
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.99 E-value=22 Score=21.17 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=10.4
Q ss_pred CCccccccccccc
Q 028874 100 GDTTCEICREQYN 112 (202)
Q Consensus 100 g~~~CEICk~~y~ 112 (202)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3468999999985
No 75
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=31.82 E-value=24 Score=36.31 Aligned_cols=60 Identities=25% Similarity=0.507 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCC----cccccccCCCCccccHHHHHHH---HHhc-----CCccccccccccccCcc
Q 028874 57 SKLVECRICHEEDEDSN----MEIPCSCCGSLKYAHRKCVQRW---CNEK-----GDTTCEICREQYNPGYT 116 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~----Li~PC~C~GslkyvH~~CL~rW---~~~k-----g~~~CEICk~~y~~~yt 116 (202)
...+.|.||.|++.++. --.-|+=.|=-+-+|..|.|+- |.+- +..+|--|++.|..-.+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlkk 186 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLKK 186 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhhc
Confidence 45689999998864322 2344554454578999999875 3343 46799999999974433
No 76
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=30.94 E-value=36 Score=26.95 Aligned_cols=19 Identities=37% Similarity=0.982 Sum_probs=15.7
Q ss_pred ccccccCCCCccccHHHHHHHHHh
Q 028874 75 EIPCSCCGSLKYAHRKCVQRWCNE 98 (202)
Q Consensus 75 i~PC~C~GslkyvH~~CL~rW~~~ 98 (202)
..||+|.. +..|..||.--
T Consensus 59 d~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 59 DHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred CCccccCC-----ccchHHHHHHH
Confidence 46999986 88999999853
No 77
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=30.08 E-value=20 Score=19.44 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=9.3
Q ss_pred ccccccccccc
Q 028874 103 TCEICREQYNP 113 (202)
Q Consensus 103 ~CEICk~~y~~ 113 (202)
.|++|+..|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 59999999974
No 78
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=29.97 E-value=53 Score=34.49 Aligned_cols=53 Identities=23% Similarity=0.581 Sum_probs=39.4
Q ss_pred CCCCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHhc-----CCccccccccccc
Q 028874 56 PSKLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~--~~~Li~PC~C~GslkyvH~~CL~rW~~~k-----g~~~CEICk~~y~ 112 (202)
.....+|-||.+.-. ...| +|+.=.+..|..|+++|-..+ ..+.|+-|+..++
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 467789999998853 2222 244446789999999998763 3689999998776
No 79
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=28 Score=29.97 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=19.1
Q ss_pred CCCCCeeeEeccCCCC--CCccccccc
Q 028874 56 PSKLVECRICHEEDED--SNMEIPCSC 80 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~--~~Li~PC~C 80 (202)
.....+|-||+|+.+. ..-..||.|
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEE
Confidence 3456799999998753 456789999
No 80
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=37 Score=31.72 Aligned_cols=27 Identities=22% Similarity=0.624 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHhc-----------CCccccccccccc
Q 028874 86 YAHRKCVQRWCNEK-----------GDTTCEICREQYN 112 (202)
Q Consensus 86 yvH~~CL~rW~~~k-----------g~~~CEICk~~y~ 112 (202)
.--+.||.+|+..+ |+-+|+.|+..|-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 45689999999643 6789999998885
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=27.16 E-value=59 Score=28.57 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=34.1
Q ss_pred CCCCCeeeEeccCCCCC-C--cccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 56 PSKLVECRICHEEDEDS-N--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~-~--Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
....-.|-|...+-... . .+.||+| .+-..+|++- +....|.+|+.+|..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~---k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL---KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh---cccccccccCCcccc
Confidence 34455666665554321 2 4789998 7778888776 245579999999973
No 82
>COG1773 Rubredoxin [Energy production and conversion]
Probab=26.84 E-value=45 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=22.0
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceee
Q 028874 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
...|.+|++.|.+.--.|..-..-|. ++..+|.-+
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd~w~CP 40 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRCGIAPGTPFEDLPDDWVCP 40 (55)
T ss_pred ceEecCCceEeccccCCccCCCCCCCchhhCCCccCCC
Confidence 45799999999877544433232233 466777654
No 83
>PF10795 DUF2607: Protein of unknown function (DUF2607); InterPro: IPR019731 This entry represents conserved protein found in in Gammaproteobacteria. The function is not known.
Probab=25.68 E-value=60 Score=25.27 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhe
Q 028874 172 ICCRIVAITVHLSLTLFGVRSLV 194 (202)
Q Consensus 172 ~~crs~ai~~~~llllr~~i~vv 194 (202)
-++|.++ +|+++|+||--++++
T Consensus 11 ~~~r~~~-l~~vaLlL~lnfA~i 32 (99)
T PF10795_consen 11 HWRRTVA-LFAVALLLWLNFAAI 32 (99)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4566666 667777776655554
No 84
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=24.62 E-value=46 Score=22.49 Aligned_cols=22 Identities=27% Similarity=0.762 Sum_probs=13.9
Q ss_pred hcCCccccccccccc-cCccCCC
Q 028874 98 EKGDTTCEICREQYN-PGYTAPP 119 (202)
Q Consensus 98 ~kg~~~CEICk~~y~-~~yt~p~ 119 (202)
.+...+||+|+..-. ..|..||
T Consensus 4 ~Rs~~kCELC~a~~~L~vy~Vpp 26 (47)
T smart00782 4 ARCESKCELCGSDSPLVVYAVPP 26 (47)
T ss_pred HHcCCcccCcCCCCCceEEecCC
Confidence 344567999997665 3355554
No 85
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=88 Score=28.56 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=38.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHH-HHHhcCCcccccccccccc
Q 028874 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQR-WCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~r-W~~~kg~~~CEICk~~y~~ 113 (202)
+.....|-||.+..+ .+.-+||. +..=-.||.. |...|- ..|++|++.-.|
T Consensus 212 p~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k~-~~CplCRak~~p 263 (271)
T COG5574 212 PLADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKKY-EFCPLCRAKVYP 263 (271)
T ss_pred cccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhcc-ccCchhhhhccc
Confidence 455778999988765 47788887 5677788888 876553 459999876554
No 86
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=24.25 E-value=27 Score=30.72 Aligned_cols=18 Identities=44% Similarity=0.678 Sum_probs=15.6
Q ss_pred cccccccCCCCccccHHH
Q 028874 74 MEIPCSCCGSLKYAHRKC 91 (202)
Q Consensus 74 Li~PC~C~GslkyvH~~C 91 (202)
...|+.|.|.+-|||+++
T Consensus 105 ~~~~~~C~GP~LYVhr~r 122 (215)
T PF04532_consen 105 AECAYFCRGPLLYVHRKR 122 (215)
T ss_pred hhCCcccCCceEEEEccc
Confidence 478999999999999943
No 87
>PF09630 DUF2024: Domain of unknown function (DUF2024); InterPro: IPR018592 This protein of 86 residues is expressed in bacteria. It consists of two alpha helices and four beta strands. Its function is unknown.; PDB: 2HFQ_A.
Probab=24.09 E-value=36 Score=25.72 Aligned_cols=16 Identities=38% Similarity=0.864 Sum_probs=10.2
Q ss_pred CCCCCCCeeeEeccCC
Q 028874 54 SSPSKLVECRICHEED 69 (202)
Q Consensus 54 ~~~~~~~~CRIC~e~~ 69 (202)
+.+..+.+||+||.+.
T Consensus 47 ~~~vt~~eC~FCHse~ 62 (81)
T PF09630_consen 47 DADVTQKECRFCHSEE 62 (81)
T ss_dssp -S---TTTEEEEEEEE
T ss_pred CCccccccCccccccc
Confidence 4456788999999875
No 88
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=23.89 E-value=76 Score=36.13 Aligned_cols=53 Identities=25% Similarity=0.477 Sum_probs=37.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc--------CCccccccccccc
Q 028874 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK--------GDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k--------g~~~CEICk~~y~ 112 (202)
.....|-||+.+--. -.||---|--+..|..|..+-+..+ +...|+||+++.+
T Consensus 3484 D~DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 445689999887522 2455433334789999998766554 5689999999765
No 89
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=33 Score=33.39 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=34.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028874 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
......|+||.++- ..-+.||. |..|+..|...+. .|++|+.....
T Consensus 476 ~~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~ 521 (543)
T KOG0802|consen 476 REPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKE 521 (543)
T ss_pred hcccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhc
Confidence 45677899998776 23356666 9999999998765 78898776653
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=22.67 E-value=40 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=18.1
Q ss_pred CccccHHHHHHHHHhcCCcccccccccccc
Q 028874 84 LKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 84 lkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
-+|.=.+||..-+.. ...|+||+++.+.
T Consensus 20 dHYLCl~CLt~ml~~--s~~C~iC~~~LPt 47 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSR--SDRCPICGKPLPT 47 (50)
T ss_dssp S-EEEHHHHHHT-SS--SSEETTTTEE---
T ss_pred chhHHHHHHHHHhcc--ccCCCcccCcCcc
Confidence 378888888877644 4589999998764
No 91
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.41 E-value=62 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.551 Sum_probs=11.5
Q ss_pred HHHHHHHh-cC-Ccccccccccccc
Q 028874 91 CVQRWCNE-KG-DTTCEICREQYNP 113 (202)
Q Consensus 91 CL~rW~~~-kg-~~~CEICk~~y~~ 113 (202)
-++++++. ++ ...|++|+.+|..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 35566654 22 2399999999864
No 92
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=21.34 E-value=51 Score=18.49 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHh
Q 028874 177 VAITVHLSLTLF 188 (202)
Q Consensus 177 ~ai~~~~llllr 188 (202)
++||+.+|||+-
T Consensus 4 ~vIIlvvLLliS 15 (19)
T PF13956_consen 4 LVIILVVLLLIS 15 (19)
T ss_pred ehHHHHHHHhcc
Confidence 357777777653
No 93
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=20.96 E-value=41 Score=19.47 Aligned_cols=12 Identities=42% Similarity=1.220 Sum_probs=10.1
Q ss_pred cccccccccccc
Q 028874 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|.+
T Consensus 3 ~~C~~CgR~F~~ 14 (25)
T PF13913_consen 3 VPCPICGRKFNP 14 (25)
T ss_pred CcCCCCCCEECH
Confidence 479999999974
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=56 Score=28.25 Aligned_cols=21 Identities=29% Similarity=0.882 Sum_probs=14.1
Q ss_pred CCCeeeEeccCCCCCCcccccc
Q 028874 58 KLVECRICHEEDEDSNMEIPCS 79 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~ 79 (202)
....||.|.+.+. .-+..||.
T Consensus 157 ~~~~Cr~C~~~~~-~VlllPCr 177 (207)
T KOG1100|consen 157 RMRSCRKCGEREA-TVLLLPCR 177 (207)
T ss_pred ccccceecCcCCc-eEEeeccc
Confidence 3444999977653 35678875
Done!