BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028875
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 63 SDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPI-TLTVYDHDLFSKDDRMG 121
S+PY + MG Q TR I+ +NP+WN + I D + LT++D D FS DD +G
Sbjct: 408 SNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLG 467
Query: 122 DAEF---DIKTYIEA-----LKMNLDSLPTGTIISRV 150
E I+T E+ ++ L +PTG + R
Sbjct: 468 RTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRF 504
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 63 SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTLSI--TDPNVPITLTVYDHDLFS 115
SDPYV +K+ + K KT+ IK +NPEWNE + +D + +++ ++D DL S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 116 KDDRMGDAEFDI 127
++D MG F I
Sbjct: 253 RNDFMGSLSFGI 264
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 63 SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTLSI--TDPNVPITLTVYDHDLFS 115
SDPYV +K+ + K KT+ IK +NPEWNE + +D + +++ ++D DL S
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 116 KDDRMGDAEFDIKTYIEA 133
++D MG F I +A
Sbjct: 112 RNDFMGSLSFGISELQKA 129
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 55 LAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLF 114
LA SDP+ ++++G +L+T + K++NPEWN+ T I D + + +TV+D D
Sbjct: 26 LAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85
Query: 115 SKDDRMG 121
D +G
Sbjct: 86 KPPDFLG 92
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 53 VNLAVRDVRS---------SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTLSI- 97
+++ VRD ++ SDPYV +K+ + K KT+ I+ +NP+WNE T +
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 98 -TDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKM 136
+D + +++ ++D D +++D MG F + E +KM
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS---ELMKM 115
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 53 VNLAVRDVRS---------SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTLSI- 97
+++ VRD ++ SDPYV +K+ + K KT+ I+ +NP+WNE T +
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 98 -TDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKM 136
+D + +++ ++D D +++D MG F + E +KM
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS---ELMKM 114
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 53 VNLAVRDVRS-SDPYVVV----KMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVP--- 103
V+LA D SDP+V + MGK+ K KT++ KK +NPE+NE+ I ++
Sbjct: 47 VHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKS 106
Query: 104 ITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPT 143
+ ++V+D+D+ +D +G + I E LK + L
Sbjct: 107 LDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 53 VNLAVRDVRS-SDPYVVV----KMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVP--- 103
V+LA D SDP+V + MGK+ K KT++ KK +NPE+NE+ I ++
Sbjct: 25 VHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKS 84
Query: 104 ITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPT 143
+ ++V+D+D+ +D +G + I E LK + L
Sbjct: 85 LDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 25 AMGTGDGVRRTSLMETXXXXXXXXXXXXVNLAVRDVR-SSDPYVVVKMGKQK-------L 76
A G G+ V S E ++LA +D+ +SDPYV + + +
Sbjct: 3 ATGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALV 62
Query: 77 KTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAE 124
+T+ IKK +NP+WNE+ + N + V+D + ++DD +G +
Sbjct: 63 QTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTRDDFLGQVD 110
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 62 SSDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNVP---ITLTVYDHDLFS 115
+SDPYV V + K+K +T+V +K +NP +NE T + + + + VYD D FS
Sbjct: 39 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98
Query: 116 KDDRMGDAEFDIKT 129
K D +G+ + + T
Sbjct: 99 KHDIIGEFKVPMNT 112
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 NLAVRDVRS-SDPYVVVKMGKQ-----KLKTRVIKKDVNPEWNEDLTLSITDPN---VPI 104
NL DV SDPYV + + + K KT + K +NP +NE + + V +
Sbjct: 161 NLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV 220
Query: 105 TLTVYDHDLFSKDDRMG 121
+TV D+D K+D +G
Sbjct: 221 VVTVLDYDKIGKNDAIG 237
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 53 VNLAVRDVRS-SDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDPNVP--- 103
V+LA D SDP+V + + K K KT++ KK +NPE+NE+ I ++
Sbjct: 47 VHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKS 106
Query: 104 ITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPT 143
+ ++V+D+D+ +D +G + I E LK + L
Sbjct: 107 LDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 62 SSDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNV---PITLTVYDHDLFS 115
+SDPYV V + K+K +T+V +K +NP +NE T + + + + VYD D FS
Sbjct: 62 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121
Query: 116 KDDRMGDAEFDIKT 129
K D +G+ + + T
Sbjct: 122 KHDIIGEFKVPMNT 135
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 62 SSDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNV---PITLTVYDHDLFS 115
+SDPYV V + K+K +T+V +K +NP +NE T + + + + VYD D FS
Sbjct: 54 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 116 KDDRMGDAEFDIKT 129
K D +G+ + + T
Sbjct: 114 KHDIIGEFKVPMNT 127
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 62 SSDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNV---PITLTVYDHDLFS 115
+SDPYV V + K+K +T+V +K +NP +NE T + + + + VYD D FS
Sbjct: 37 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 96
Query: 116 KDDRMGD 122
K D +G+
Sbjct: 97 KHDIIGE 103
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 62 SSDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNV---PITLTVYDHDLFS 115
+SDPYV V + K+K +T+V +K +NP +NE T + + + + VYD D FS
Sbjct: 54 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 116 KDDRMGDAEFDIKT 129
K D +G+ + + T
Sbjct: 114 KHDIIGEFKVPMNT 127
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 63 SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTLSITDPNVP--ITLTVYDHDLFS 115
SDPYV +K+ K KTR +K +NP WNE ++ +V +++ V+D D S
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTS 100
Query: 116 KDDRMGDAEFDIKTYIEA 133
++D MG F + ++A
Sbjct: 101 RNDFMGAMSFGVSELLKA 118
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 53 VNLAVRDVRS---------SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTLSI- 97
+++ VRD ++ SDPYV +K+ + K KT+ I+ +NP+WNE T +
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 98 -TDPNVPITLTVYDHDLFSKDDRMGDAEFDI 127
+D + +++ ++D D +++D G F +
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGV 110
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 53 VNLAVRDVR-SSDPYVVVKMGK------QKLKTRVIKKDVNPEWNEDLTLSITDPNVPIT 105
+ LA +D+ +SDPYV V + ++T+ IKK +NP+WNE++ + +
Sbjct: 30 IGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLL 89
Query: 106 LTVYDHDLFSKDDRMGDAE 124
V+D + ++DD +G +
Sbjct: 90 FEVFDENRLTRDDFLGQVD 108
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 53 VNLAVRDV-RSSDPYVVVKMGK------QKLKTRVIKKDVNPEWNEDLTLSITDPNVPIT 105
+ LA +D+ +SDPYV V + ++T+ IKK +NP+WNE++ + I
Sbjct: 18 IGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRIL 77
Query: 106 LTVYDHDLFSKDDRMGDAEFDIKTY 130
V+D + ++DD +G + D+ Y
Sbjct: 78 FEVFDENRLTRDDFLG--QVDVPLY 100
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 62 SSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHD 112
SSDPYV V++GK K +T+ I ++NP W E+ + + I + V D D
Sbjct: 37 SSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 63 SDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNVP---ITLTVYDHDLFSK 116
SDPYV + + K+K +T+V +K +NP +NE S+ + + +VYD D FS+
Sbjct: 42 SDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 101
Query: 117 DDRMGDAEFD 126
D +G D
Sbjct: 102 HDLIGQVVLD 111
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 NLAVRDVRS-SDPYV---VVKMGK--QKLKTRVIKKDVNPEWNEDLTLSITD---PNVPI 104
NL D+ SDPYV ++ G+ +K KT + K +NP +NE L + NV +
Sbjct: 164 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 223
Query: 105 TLTVYDHDLFSKDDRMG 121
++ V D+D ++ +G
Sbjct: 224 SIAVVDYDCIGHNEVIG 240
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 63 SDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNVP---ITLTVYDHDLFSK 116
SDPYV + + K+K +T+V +K +NP +NE S+ + + +VYD D FS+
Sbjct: 41 SDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 100
Query: 117 DDRMGDAEFD 126
D +G D
Sbjct: 101 HDLIGQVVLD 110
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 NLAVRDVRS-SDPYV---VVKMGK--QKLKTRVIKKDVNPEWNEDLTLSITD---PNVPI 104
NL D+ SDPYV ++ G+ +K KT + K +NP +NE L + NV +
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Query: 105 TLTVYDHDLFSKDDRMG 121
++ V D+D ++ +G
Sbjct: 223 SIAVVDYDCIGHNEVIG 239
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 15/73 (20%)
Query: 62 SSDPYVVVKM---GKQKLKTRVIKKDVNPEWNEDLTLSITDPNVP--------ITLTVYD 110
+SDP+V + + K KL+T+V +K++NP WNE P + L V D
Sbjct: 46 TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE----GFPYEKVVQRILYLQVLD 101
Query: 111 HDLFSKDDRMGDA 123
+D FS++D +G+
Sbjct: 102 YDRFSRNDPIGEV 114
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 62 SSDPYV---VVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPIT--------LTVYD 110
+SDPY+ ++ K K+KTRV++K ++P ++E T +P T T+
Sbjct: 43 TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY----GIPYTQIQELALHFTILS 98
Query: 111 HDLFSKDDRMGD 122
D FS+DD +G+
Sbjct: 99 FDRFSRDDIIGE 110
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 19/95 (20%)
Query: 54 NLAVRDVRS-SDPYVVVKM--------------GKQKLKTRVIKKDVNPEWNEDLTL-SI 97
NL RD SDP+V V + + K +T+ ++K +NPEWN+ + SI
Sbjct: 29 NLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSI 88
Query: 98 TDPNV---PITLTVYDHDLFSKDDRMGDAEFDIKT 129
+ + + +TV+D+D FS +D +G+ D+ +
Sbjct: 89 SMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 64 DPYVVVKMGKQKLKTRVIKK-DVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGD 122
DPYV + Q K+ V + PEWNE ++++ + ++D D+ ++DD +G+
Sbjct: 32 DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGE 91
Query: 123 A 123
A
Sbjct: 92 A 92
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 63 SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTL-SITDPNV---PITLTVYDHDL 113
+DPYV + + KL+T+ ++ NP WNE L IT+ ++ + ++V D D
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 114 FSKDDRMGDAEFDIK 128
F ++ +G+ F +K
Sbjct: 110 FGHNEFIGETRFSLK 124
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 63 SDPYVVVKM-----GKQKLKTRVIKKDVNPEWNEDLTL-SITDPNVP---ITLTVYDHDL 113
+DPYV + + KL+T+ ++ NP WNE L IT+ ++ + ++V D D
Sbjct: 48 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 107
Query: 114 FSKDDRMGDAEFDIK 128
F ++ +G+ F +K
Sbjct: 108 FGHNEFIGETRFSLK 122
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 65 PYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAE 124
PYV V + Q KT +P+W + LT+ +T P + V+ H D +G A
Sbjct: 59 PYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAA 117
Query: 125 FDIKTYIEALKMNLD 139
DI +++ M L+
Sbjct: 118 LDIYETLKSNNMKLE 132
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 62 SSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLS--ITDPNVPITLTVYDHDLFSKDDR 119
++D Y+ V G Q+ +T V+ + NP W + + + P+ + V+D D DD
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 120 MGDAE 124
+G +
Sbjct: 473 LGSCD 477
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 62 SSDPYVVVKMGK---QKLKTRVIKKDVNPEWNEDLTLSITDPNVP--ITLTVYDHDLFSK 116
+ DPYV + + + +TR D+NP WNE I DPN + +T+ D + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN-YVM 98
Query: 117 DDRMGDAEFDIKT 129
D+ +G A F + +
Sbjct: 99 DETLGTATFTVSS 111
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 64 DPYVVVKMGK---QKLKTRVIKKDVNPEWNEDLTLSITDPNVP--ITLTVYDHDLFSKDD 118
DPYV + + + +TR D+NP WNE I DPN + +T+ D + + D+
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN-YVMDE 85
Query: 119 RMGDAEFDIKT 129
+G A F + +
Sbjct: 86 TLGTATFTVSS 96
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 62 SSDPYVVVKMGK---QKLKTRVIKKDVNPEWNEDLTLSITDPNVP--ITLTVYDHDLFSK 116
+ DPYV + + + +TR D+NP WNE I DPN + +T+ D + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN-YVM 98
Query: 117 DDRMGDAEFDIKT 129
D+ +G A F + +
Sbjct: 99 DETLGTATFTVSS 111
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 54 NLAVRDV-RSSDPY--VVVKMGKQKLKTRVIKKDVNPEWNE--DLTLSITDPNVPITLTV 108
NLA +D R DP+ +VV Q T +K ++P+WN+ DL + TD IT++V
Sbjct: 16 NLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD---SITISV 72
Query: 109 YDHDLFSKDDRMG 121
++H K G
Sbjct: 73 WNHKKIHKKQGAG 85
>pdb|1DXQ|A Chain A, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|B Chain B, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|C Chain C, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|D Chain D, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
Length = 273
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 132 EALKMNLDSLPTGTIISR------VMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECG 185
E L+ +L ++ IISR + S++ +S + +KEG++ D+V + +E
Sbjct: 35 EVLESDLYAMNFNPIISRNDITGELKDSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAA 94
Query: 186 EL---EIQLQWIDLPG 198
+L + LQW +P
Sbjct: 95 DLVIFQFPLQWFGVPA 110
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 54 NLAVRDV-RSSDPY--VVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYD 110
NL +D R DP+ VVV Q T +K ++P+WN+ L I + +T++V++
Sbjct: 14 NLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKSD-SVTISVWN 72
Query: 111 HDLFSKDDRMG 121
H K G
Sbjct: 73 HKKIHKKQGAG 83
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 59 DVRSSDPYVVV-----KMGKQKLKTRVIKKDVNPEWNEDLTLS 96
D R +PYV + + K K +T+ +KK + P+WN+ S
Sbjct: 38 DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 59 DVRSSDPYVVV-----KMGKQKLKTRVIKKDVNPEWNEDLTLS 96
D R +PYV + + K K +T+ +KK + P+WN+ S
Sbjct: 35 DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 54 NLAVRDVRSSDPYVVV-----KMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNV 102
NL SDPYV + K + KT V KK +NP +++ S++ P V
Sbjct: 35 NLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEV 88
>pdb|1H66|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-
Benzoquinone
pdb|1H66|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-
Benzoquinone
pdb|1H66|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-
Benzoquinone
pdb|1H66|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-
Benzoquinone
pdb|1H69|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
Length = 273
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 161 QSCVVWKEGKVVQDLVLRLRNVECGEL---EIQLQWIDLPG 198
+S + +KEG + D+V + +E +L + LQW +P
Sbjct: 70 ESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPA 110
>pdb|1D4A|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1DXO|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1GG5|A Chain A, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|B Chain B, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|C Chain C, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|D Chain D, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1KBO|A Chain A, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|B Chain B, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|C Chain C, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|D Chain D, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBQ|A Chain A, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|B Chain B, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|C Chain C, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|D Chain D, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|2F1O|A Chain A, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|B Chain B, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|C Chain C, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|D Chain D, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|E Chain E, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|F Chain F, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|G Chain G, Crystal Structure Of Nqo1 With Dicoumarol
pdb|2F1O|H Chain H, Crystal Structure Of Nqo1 With Dicoumarol
pdb|3JSX|A Chain A, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|B Chain B, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|C Chain C, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|D Chain D, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|E Chain E, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|F Chain F, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|G Chain G, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
pdb|3JSX|H Chain H, X-Ray Crystal Structure Of Nad(P)h: Quinone
Oxidoreductase-1 (Nqo1) Bound To The Coumarin-Based
Inhibitor As1
Length = 273
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 161 QSCVVWKEGKVVQDLVLRLRNVECGEL---EIQLQWIDLPG 198
+S + +KEG + D+V + +E +L + LQW +P
Sbjct: 70 ESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPA 110
>pdb|1QBG|A Chain A, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|B Chain B, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|C Chain C, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|D Chain D, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
Length = 272
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 161 QSCVVWKEGKVVQDLVLRLRNVECGEL---EIQLQWIDLPG 198
+S + +KEG + D+V + +E +L + LQW +P
Sbjct: 69 ESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPA 109
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 NLAVRDVRS-SDPYVVVKMGKQ-----KLKTRVIKKDVNPEWNEDLTLSITDPN---VPI 104
NL DV SDPYV + + + K KT + K +NP +NE + + V +
Sbjct: 36 NLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV 95
Query: 105 TLTVYDHDLFSKDDRMG 121
+TV D+D K+D +G
Sbjct: 96 VVTVLDYDKIGKNDAIG 112
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 54 NLAVRDVR-SSDPYVVVK-MGKQK----LKTRVIKKDVNPEWNEDLTLSITDPNV---PI 104
NL D+ +SDPYV V M K K KT K+++NP +NE I + I
Sbjct: 27 NLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTI 86
Query: 105 TLTVYDHDLFSKDDRMGDAEFDIKT 129
+TV D D S++D +G K+
Sbjct: 87 IITVMDKDKLSRNDVIGKIYLSWKS 111
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 NLAVRDVRS-SDPYVVVKMGKQ-----KLKTRVIKKDVNPEWNEDLTLSITDPN---VPI 104
NL DV SDPYV + + + K KT + K +NP +NE + + V +
Sbjct: 29 NLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV 88
Query: 105 TLTVYDHDLFSKDDRMG 121
+TV D+D K+D +G
Sbjct: 89 VVTVLDYDKIGKNDAIG 105
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 NLAVRDVRS-SDPYVVVKMGKQ-----KLKTRVIKKDVNPEWNEDLTLSITDPN---VPI 104
NL DV SDPYV + + + K KT + K +NP +NE + + V +
Sbjct: 28 NLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV 87
Query: 105 TLTVYDHDLFSKDDRMG 121
+TV D+D K+D +G
Sbjct: 88 VVTVLDYDKIGKNDAIG 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,860,800
Number of Sequences: 62578
Number of extensions: 210597
Number of successful extensions: 515
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 51
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)