Query 028875
Match_columns 202
No_of_seqs 239 out of 1749
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 1.1E-33 2.3E-38 206.8 15.8 162 41-202 4-168 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 1.2E-29 2.5E-34 186.5 19.0 143 43-185 2-145 (145)
3 cd04016 C2_Tollip C2 domain pr 99.9 1.7E-25 3.6E-30 159.5 12.6 114 43-193 2-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 8.6E-24 1.9E-28 152.2 12.8 88 45-132 1-95 (126)
5 cd08375 C2_Intersectin C2 doma 99.9 6.4E-23 1.4E-27 149.5 15.7 124 38-193 10-135 (136)
6 cd08376 C2B_MCTP_PRT C2 domain 99.9 5.8E-23 1.3E-27 145.7 14.2 113 44-194 1-115 (116)
7 cd04042 C2A_MCTP_PRT C2 domain 99.9 5.3E-23 1.2E-27 147.1 13.9 115 44-195 1-121 (121)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 5.1E-23 1.1E-27 147.6 13.3 89 45-133 2-100 (126)
9 cd08391 C2A_C2C_Synaptotagmin_ 99.9 4.6E-23 1E-27 147.1 12.9 113 43-193 1-121 (121)
10 cd08681 C2_fungal_Inn1p-like C 99.9 9.3E-23 2E-27 145.1 12.2 113 43-193 1-118 (118)
11 cd04022 C2A_MCTP_PRT_plant C2 99.9 1.4E-22 3.1E-27 146.0 12.5 115 44-194 1-126 (127)
12 cd04024 C2A_Synaptotagmin-like 99.9 3E-22 6.5E-27 144.3 13.9 117 43-193 1-128 (128)
13 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 2.5E-22 5.3E-27 143.6 13.1 112 45-193 2-121 (121)
14 cd08678 C2_C21orf25-like C2 do 99.9 7.8E-22 1.7E-26 142.0 14.4 115 45-197 1-123 (126)
15 cd04036 C2_cPLA2 C2 domain pre 99.9 5.2E-22 1.1E-26 141.5 13.1 111 45-193 2-117 (119)
16 cd08377 C2C_MCTP_PRT C2 domain 99.9 8.2E-22 1.8E-26 140.3 13.8 90 43-132 1-91 (119)
17 cd04019 C2C_MCTP_PRT_plant C2 99.9 8.9E-22 1.9E-26 145.6 13.2 89 44-132 1-92 (150)
18 cd04044 C2A_Tricalbin-like C2 99.9 1.6E-21 3.4E-26 139.7 12.6 93 42-134 1-97 (124)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 2.5E-21 5.4E-26 138.5 13.0 112 45-192 2-120 (121)
20 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 2.8E-21 6.2E-26 140.2 13.1 120 44-194 1-133 (133)
21 cd04015 C2_plant_PLD C2 domain 99.9 3.3E-21 7.2E-26 143.8 13.4 116 41-194 5-158 (158)
22 cd08400 C2_Ras_p21A1 C2 domain 99.9 7.3E-21 1.6E-25 137.0 13.8 113 43-195 4-124 (126)
23 cd04014 C2_PKC_epsilon C2 doma 99.9 1.1E-20 2.4E-25 137.1 14.4 117 41-195 2-130 (132)
24 cd08378 C2B_MCTP_PRT_plant C2 99.9 3E-21 6.4E-26 138.0 11.2 114 44-193 1-119 (121)
25 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 6.5E-21 1.4E-25 136.6 12.5 89 44-132 1-91 (123)
26 cd08395 C2C_Munc13 C2 domain t 99.9 5.8E-21 1.3E-25 135.9 11.7 90 44-133 1-101 (120)
27 cd08373 C2A_Ferlin C2 domain f 99.9 1.9E-20 4.2E-25 134.9 14.3 116 49-202 2-124 (127)
28 cd04046 C2_Calpain C2 domain p 99.9 1.8E-20 3.9E-25 134.9 13.6 88 42-130 2-90 (126)
29 cd08677 C2A_Synaptotagmin-13 C 99.9 4.4E-21 9.4E-26 135.2 9.4 92 38-131 9-107 (118)
30 cd04039 C2_PSD C2 domain prese 99.9 2.4E-20 5.3E-25 130.6 13.0 93 43-135 1-100 (108)
31 cd04050 C2B_Synaptotagmin-like 99.8 2.9E-20 6.4E-25 129.6 12.8 86 45-133 2-89 (105)
32 cd08381 C2B_PI3K_class_II C2 d 99.8 8.2E-21 1.8E-25 135.9 9.7 92 42-133 12-112 (122)
33 cd04027 C2B_Munc13 C2 domain s 99.8 4.6E-20 9.9E-25 133.0 13.0 87 44-130 2-100 (127)
34 cd04028 C2B_RIM1alpha C2 domai 99.8 1.7E-20 3.7E-25 137.6 10.7 92 41-132 27-126 (146)
35 cd04043 C2_Munc13_fungal C2 do 99.8 1E-19 2.3E-24 130.8 14.4 116 44-195 2-122 (126)
36 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.9E-20 4.1E-25 134.6 10.1 96 38-133 10-115 (125)
37 cd04041 C2A_fungal C2 domain f 99.8 4.6E-20 9.9E-25 129.9 11.2 91 43-133 1-100 (111)
38 cd04017 C2D_Ferlin C2 domain f 99.8 1.1E-19 2.3E-24 132.4 13.1 119 44-196 2-134 (135)
39 cd08394 C2A_Munc13 C2 domain f 99.8 8.5E-20 1.8E-24 129.9 11.7 87 43-133 2-88 (127)
40 cd08382 C2_Smurf-like C2 domai 99.8 1.1E-19 2.5E-24 130.2 12.5 88 45-133 2-93 (123)
41 cd08387 C2A_Synaptotagmin-8 C2 99.8 4.9E-20 1.1E-24 132.2 10.3 96 38-133 11-113 (124)
42 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.3E-20 5E-25 134.2 8.0 96 38-133 10-115 (125)
43 cd08688 C2_KIAA0528-like C2 do 99.8 7.9E-20 1.7E-24 128.5 10.5 88 45-132 1-94 (110)
44 cd04052 C2B_Tricalbin-like C2 99.8 3.1E-19 6.7E-24 125.7 12.8 100 60-196 10-111 (111)
45 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.1E-19 2.5E-24 130.3 10.4 95 38-132 11-112 (124)
46 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.6E-20 1.6E-24 131.9 9.5 95 38-132 10-114 (128)
47 cd04045 C2C_Tricalbin-like C2 99.8 5.1E-19 1.1E-23 126.3 13.7 91 43-133 1-93 (120)
48 cd08680 C2_Kibra C2 domain fou 99.8 1.2E-19 2.5E-24 130.1 9.4 95 38-132 9-113 (124)
49 cd04031 C2A_RIM1alpha C2 domai 99.8 1.7E-19 3.6E-24 129.4 10.2 92 38-129 11-112 (125)
50 cd04010 C2B_RasA3 C2 domain se 99.8 9.6E-20 2.1E-24 134.3 8.8 89 44-133 1-110 (148)
51 cd04030 C2C_KIAA1228 C2 domain 99.8 3.1E-19 6.7E-24 128.5 10.2 95 38-132 11-116 (127)
52 cd04049 C2_putative_Elicitor-r 99.8 1.4E-18 3E-23 124.6 13.2 91 43-133 1-97 (124)
53 cd08685 C2_RGS-like C2 domain 99.8 2.4E-19 5.1E-24 127.8 9.1 92 41-132 10-109 (119)
54 cd04051 C2_SRC2_like C2 domain 99.8 5.6E-19 1.2E-23 126.8 11.2 91 44-134 1-99 (125)
55 cd04011 C2B_Ferlin C2 domain s 99.8 6.7E-19 1.5E-23 123.9 11.3 90 41-133 2-96 (111)
56 cd08388 C2A_Synaptotagmin-4-11 99.8 1.4E-18 3E-23 125.4 12.6 95 38-132 11-114 (128)
57 cd04032 C2_Perforin C2 domain 99.8 6.9E-19 1.5E-23 126.4 10.5 93 39-131 24-118 (127)
58 cd04018 C2C_Ferlin C2 domain t 99.8 1.5E-18 3.2E-23 128.3 12.2 89 45-133 2-107 (151)
59 cd04013 C2_SynGAP_like C2 doma 99.8 5.6E-18 1.2E-22 124.1 14.1 116 41-197 9-142 (146)
60 cd08389 C2A_Synaptotagmin-14_1 99.8 9.9E-19 2.1E-23 125.5 9.9 94 38-132 11-112 (124)
61 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.1E-18 2.3E-23 125.3 10.1 95 38-132 11-113 (125)
62 cd04009 C2B_Munc13-like C2 dom 99.8 1.8E-18 3.9E-23 125.6 10.7 95 38-132 11-118 (133)
63 cd08390 C2A_Synaptotagmin-15-1 99.8 2E-18 4.3E-23 123.5 10.6 96 38-133 9-112 (123)
64 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 7.3E-19 1.6E-23 131.7 8.6 92 41-132 25-126 (162)
65 cd04021 C2_E3_ubiquitin_ligase 99.8 1.8E-17 3.8E-22 119.1 15.4 90 43-134 2-93 (125)
66 cd08521 C2A_SLP C2 domain firs 99.8 1.9E-18 4.2E-23 123.6 10.0 95 38-132 9-113 (123)
67 cd08406 C2B_Synaptotagmin-12 C 99.8 9.4E-19 2E-23 127.4 8.0 92 38-129 10-110 (136)
68 cd08676 C2A_Munc13-like C2 dom 99.8 3.8E-18 8.2E-23 126.2 10.7 90 38-131 23-143 (153)
69 cd08383 C2A_RasGAP C2 domain ( 99.8 5.7E-18 1.2E-22 120.0 11.1 107 45-193 2-117 (117)
70 cd04040 C2D_Tricalbin-like C2 99.8 9.4E-18 2E-22 118.7 11.9 88 45-132 1-91 (115)
71 cd08691 C2_NEDL1-like C2 domai 99.8 2E-17 4.4E-22 120.4 13.9 88 44-133 2-107 (137)
72 cd08407 C2B_Synaptotagmin-13 C 99.8 2.4E-18 5.3E-23 125.3 9.0 92 38-129 10-112 (138)
73 cd08690 C2_Freud-1 C2 domain f 99.8 1.4E-17 2.9E-22 123.3 13.0 89 45-133 4-110 (155)
74 cd04026 C2_PKC_alpha_gamma C2 99.8 5.1E-18 1.1E-22 122.8 10.4 90 43-132 13-110 (131)
75 KOG0696 Serine/threonine prote 99.8 3.5E-19 7.7E-24 147.2 4.3 93 41-133 178-278 (683)
76 cd08692 C2B_Tac2-N C2 domain s 99.8 5.3E-18 1.2E-22 122.3 9.9 93 37-129 8-109 (135)
77 cd08675 C2B_RasGAP C2 domain s 99.8 4.5E-18 9.8E-23 124.1 9.5 88 45-132 1-108 (137)
78 PLN03008 Phospholipase D delta 99.8 1E-17 2.2E-22 149.2 13.5 121 41-199 12-182 (868)
79 PLN03200 cellulose synthase-in 99.8 4.8E-18 1E-22 163.0 12.0 121 35-194 1972-2100(2102)
80 cd04037 C2E_Ferlin C2 domain f 99.8 1.2E-17 2.7E-22 119.8 11.1 88 44-131 1-92 (124)
81 cd08384 C2B_Rabphilin_Doc2 C2 99.8 6E-18 1.3E-22 122.8 9.5 92 38-129 8-108 (133)
82 cd08404 C2B_Synaptotagmin-4 C2 99.7 6.4E-18 1.4E-22 123.1 9.1 92 38-129 10-110 (136)
83 cd08402 C2B_Synaptotagmin-1 C2 99.7 8.7E-18 1.9E-22 122.4 8.9 93 38-130 10-111 (136)
84 cd08408 C2B_Synaptotagmin-14_1 99.7 9.4E-18 2E-22 122.5 8.5 93 38-130 10-112 (138)
85 cd00275 C2_PLC_like C2 domain 99.7 1.4E-16 3E-21 114.6 13.8 89 43-132 2-101 (128)
86 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.1E-17 6.7E-22 119.5 9.9 93 38-130 10-111 (136)
87 cd08410 C2B_Synaptotagmin-17 C 99.7 2.3E-17 4.9E-22 120.1 9.1 91 38-128 9-108 (135)
88 cd08686 C2_ABR C2 domain in th 99.7 2.8E-16 6E-21 110.5 13.1 80 45-129 1-92 (118)
89 cd08403 C2B_Synaptotagmin-3-5- 99.7 4.5E-17 9.8E-22 118.3 9.2 91 38-128 9-108 (134)
90 cd00276 C2B_Synaptotagmin C2 d 99.7 5.2E-17 1.1E-21 117.7 8.4 92 38-129 9-109 (134)
91 cd04048 C2A_Copine C2 domain f 99.7 1.7E-16 3.7E-21 113.2 10.5 85 49-133 6-103 (120)
92 KOG1028 Ca2+-dependent phospho 99.7 1.1E-16 2.4E-21 136.3 11.1 96 38-133 162-264 (421)
93 cd08409 C2B_Synaptotagmin-15 C 99.7 1.1E-16 2.4E-21 116.8 9.0 91 38-128 10-108 (137)
94 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1.5E-16 3.2E-21 113.9 9.4 95 38-133 10-114 (123)
95 cd04047 C2B_Copine C2 domain s 99.7 1.2E-15 2.6E-20 107.0 9.9 85 48-133 5-101 (110)
96 PF00168 C2: C2 domain; Inter 99.6 2.5E-15 5.5E-20 99.7 8.6 80 45-124 1-85 (85)
97 KOG2059 Ras GTPase-activating 99.6 1.8E-15 3.8E-20 131.2 9.7 122 43-202 5-133 (800)
98 KOG1011 Neurotransmitter relea 99.6 9.4E-16 2E-20 132.1 6.4 93 39-131 291-395 (1283)
99 COG5038 Ca2+-dependent lipid-b 99.5 1.5E-13 3.3E-18 124.9 12.4 122 10-134 406-531 (1227)
100 smart00239 C2 Protein kinase C 99.5 3.7E-13 8E-18 91.4 10.4 90 45-134 2-96 (101)
101 cd08374 C2F_Ferlin C2 domain s 99.5 8.7E-13 1.9E-17 95.1 10.4 89 45-133 2-124 (133)
102 PLN02270 phospholipase D alpha 99.5 1.1E-12 2.4E-17 117.2 13.2 121 41-199 6-153 (808)
103 cd00030 C2 C2 domain. The C2 d 99.4 1.7E-12 3.6E-17 87.8 10.9 87 45-131 1-90 (102)
104 PLN02223 phosphoinositide phos 99.4 1.8E-12 4E-17 111.6 13.0 94 42-135 408-513 (537)
105 KOG1028 Ca2+-dependent phospho 99.4 7.6E-13 1.6E-17 112.9 8.8 93 37-129 292-393 (421)
106 KOG1031 Predicted Ca2+-depende 99.3 5.2E-12 1.1E-16 108.2 9.6 113 42-155 2-120 (1169)
107 PLN02952 phosphoinositide phos 99.3 1.6E-11 3.4E-16 107.8 12.7 93 42-134 469-574 (599)
108 COG5038 Ca2+-dependent lipid-b 99.3 2.8E-12 6.1E-17 116.9 7.6 99 41-139 1038-1139(1227)
109 cd08689 C2_fungal_Pkc1p C2 dom 99.3 1.7E-11 3.6E-16 83.9 9.4 86 45-135 1-91 (109)
110 PLN02230 phosphoinositide phos 99.3 1.8E-11 3.9E-16 107.3 11.9 95 41-135 467-574 (598)
111 PLN02222 phosphoinositide phos 99.3 4E-11 8.6E-16 104.9 12.9 94 42-135 451-557 (581)
112 KOG0169 Phosphoinositide-speci 99.3 2.5E-11 5.4E-16 106.9 10.8 92 44-135 617-720 (746)
113 KOG1264 Phospholipase C [Lipid 99.2 5E-11 1.1E-15 105.3 10.2 93 42-134 1064-1164(1267)
114 PLN02228 Phosphoinositide phos 99.2 1.5E-10 3.3E-15 101.1 12.7 94 42-135 430-537 (567)
115 KOG1328 Synaptic vesicle prote 99.2 2.2E-12 4.7E-17 112.6 -1.2 120 38-196 109-302 (1103)
116 KOG1328 Synaptic vesicle prote 99.1 2.8E-11 6.1E-16 105.8 1.1 95 38-132 942-1049(1103)
117 PLN02352 phospholipase D epsil 99.0 3.8E-09 8.2E-14 94.6 12.7 115 41-199 8-135 (758)
118 KOG1326 Membrane-associated pr 98.7 1.4E-08 2.9E-13 91.9 4.6 91 39-129 609-703 (1105)
119 KOG2059 Ras GTPase-activating 98.6 4.2E-08 9.1E-13 86.1 5.2 83 50-132 138-241 (800)
120 KOG0905 Phosphoinositide 3-kin 98.5 1.3E-07 2.8E-12 87.0 4.3 92 42-133 1523-1624(1639)
121 KOG1011 Neurotransmitter relea 98.5 7.8E-07 1.7E-11 77.9 8.7 92 43-134 1125-1227(1283)
122 PLN02964 phosphatidylserine de 98.4 9.1E-07 2E-11 78.8 7.2 90 38-133 49-140 (644)
123 KOG1013 Synaptic vesicle prote 98.4 6E-07 1.3E-11 72.7 5.3 91 38-128 228-327 (362)
124 cd08683 C2_C2cd3 C2 domain fou 98.2 5E-06 1.1E-10 59.0 6.2 90 45-134 1-134 (143)
125 KOG1013 Synaptic vesicle prote 98.1 6.6E-07 1.4E-11 72.5 -0.7 97 38-134 88-194 (362)
126 KOG2060 Rab3 effector RIM1 and 98.0 4.9E-06 1.1E-10 68.6 2.7 93 40-132 266-366 (405)
127 cd08684 C2A_Tac2-N C2 domain f 97.7 4.2E-05 9.1E-10 50.7 3.0 85 47-133 3-95 (103)
128 KOG1265 Phospholipase C [Lipid 97.6 0.00013 2.9E-09 66.2 6.3 88 41-135 701-799 (1189)
129 KOG3837 Uncharacterized conser 97.6 7.3E-05 1.6E-09 62.6 4.1 95 41-135 365-478 (523)
130 KOG1326 Membrane-associated pr 97.5 1.6E-05 3.6E-10 72.5 -0.7 87 41-127 204-301 (1105)
131 KOG1327 Copine [Signal transdu 97.4 0.00036 7.7E-09 60.7 6.5 82 50-132 143-236 (529)
132 PF15627 CEP76-C2: CEP76 C2 do 97.1 0.012 2.5E-07 43.6 10.6 95 39-133 5-118 (156)
133 cd08398 C2_PI3K_class_I_alpha 96.9 0.0068 1.5E-07 45.1 8.1 102 43-154 8-123 (158)
134 cd08693 C2_PI3K_class_I_beta_d 96.8 0.0082 1.8E-07 45.4 8.0 105 43-155 8-138 (173)
135 PF10358 NT-C2: N-terminal C2 96.8 0.096 2.1E-06 37.9 13.5 122 41-200 5-141 (143)
136 cd08380 C2_PI3K_like C2 domain 96.7 0.0089 1.9E-07 44.3 7.4 106 43-155 8-125 (156)
137 KOG1452 Predicted Rho GTPase-a 96.6 0.0049 1.1E-07 50.3 5.5 91 39-130 47-141 (442)
138 PF12416 DUF3668: Cep120 prote 96.5 0.025 5.5E-07 47.2 9.5 84 45-130 2-94 (340)
139 cd08397 C2_PI3K_class_III C2 d 96.5 0.0099 2.2E-07 44.3 6.3 87 62-155 29-125 (159)
140 cd08687 C2_PKN-like C2 domain 96.3 0.061 1.3E-06 36.0 8.4 65 62-131 8-73 (98)
141 cd08399 C2_PI3K_class_I_gamma 96.3 0.05 1.1E-06 41.3 9.1 106 43-155 10-140 (178)
142 cd04012 C2A_PI3K_class_II C2 d 95.7 0.1 2.2E-06 39.3 8.4 107 41-154 6-136 (171)
143 PF00792 PI3K_C2: Phosphoinosi 95.1 0.15 3.2E-06 37.1 7.4 72 77-155 23-103 (142)
144 PF15625 CC2D2AN-C2: CC2D2A N- 94.5 1.5 3.3E-05 32.9 11.9 68 62-130 36-106 (168)
145 cd08695 C2_Dock-B C2 domains f 93.9 0.8 1.7E-05 35.1 9.2 55 74-128 53-112 (189)
146 KOG1327 Copine [Signal transdu 93.0 0.25 5.5E-06 43.4 5.7 62 75-136 42-108 (529)
147 PF14429 DOCK-C2: C2 domain in 92.8 0.51 1.1E-05 35.8 6.7 55 75-129 60-120 (184)
148 smart00142 PI3K_C2 Phosphoinos 92.6 0.95 2.1E-05 30.8 7.2 68 45-112 13-91 (100)
149 cd08694 C2_Dock-A C2 domains f 92.5 1.8 4E-05 33.3 9.3 55 74-128 53-114 (196)
150 PF11618 DUF3250: Protein of u 92.4 0.86 1.9E-05 31.6 6.8 67 66-134 2-77 (107)
151 PF07162 B9-C2: Ciliary basal 92.1 3.9 8.4E-05 30.6 13.7 76 47-127 6-101 (168)
152 KOG1329 Phospholipase D1 [Lipi 89.5 0.35 7.7E-06 44.8 3.3 71 63-133 138-210 (887)
153 KOG0694 Serine/threonine prote 88.7 0.24 5.2E-06 44.7 1.6 69 62-131 27-96 (694)
154 cd08679 C2_DOCK180_related C2 86.9 2.5 5.4E-05 31.9 6.1 54 75-129 54-115 (178)
155 cd08696 C2_Dock-C C2 domains f 86.4 2.7 5.8E-05 32.0 6.0 56 74-129 54-118 (179)
156 cd08697 C2_Dock-D C2 domains f 83.9 5 0.00011 30.7 6.4 56 74-129 56-123 (185)
157 PTZ00447 apical membrane antig 83.5 23 0.00049 29.9 10.4 81 44-129 59-141 (508)
158 KOG2419 Phosphatidylserine dec 72.5 0.53 1.2E-05 42.3 -2.1 75 40-115 277-358 (975)
159 PF06219 DUF1005: Protein of u 69.5 35 0.00077 29.5 8.0 67 62-128 35-127 (460)
160 KOG0904 Phosphatidylinositol 3 67.0 40 0.00087 32.0 8.4 102 43-153 343-472 (1076)
161 KOG0906 Phosphatidylinositol 3 66.8 5.1 0.00011 36.4 2.7 43 87-129 77-123 (843)
162 PF12416 DUF3668: Cep120 prote 58.8 90 0.0019 26.3 8.5 90 41-135 190-298 (340)
163 PF14909 SPATA6: Spermatogenes 56.8 74 0.0016 23.2 8.9 69 62-131 19-100 (140)
164 KOG4269 Rac GTPase-activating 54.3 7.2 0.00016 36.7 1.5 55 41-99 757-816 (1112)
165 KOG3543 Ca2+-dependent activat 46.9 52 0.0011 30.2 5.5 81 44-126 342-425 (1218)
166 PF01060 DUF290: Transthyretin 36.5 63 0.0014 20.7 3.5 27 101-127 11-37 (80)
167 KOG4028 Uncharacterized conser 31.4 1.9E+02 0.0041 20.9 5.4 24 102-125 74-97 (175)
168 TIGR03711 acc_sec_asp3 accesso 27.6 2.4E+02 0.0052 20.4 6.7 59 139-198 32-92 (135)
169 PF14924 DUF4497: Protein of u 26.1 2.2E+02 0.0048 19.5 6.0 32 102-133 29-63 (112)
170 KOG4027 Uncharacterized conser 24.9 2E+02 0.0044 21.5 4.8 40 88-127 65-108 (187)
171 PF10409 PTEN_C2: C2 domain of 23.4 2.7E+02 0.0058 19.4 9.4 81 50-131 11-98 (134)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=206.80 Aligned_cols=162 Identities=61% Similarity=1.029 Sum_probs=155.1
Q ss_pred cceEEEEEEEEeecCCCCCC-CCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCc
Q 028875 41 LLGLLRIRIKRGVNLAVRDV-RSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~-~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~ 119 (202)
+.|.|+|+|++|.+|..+|+ +.+||||++.+++++.+|+++.++.||.|||.|+|.+.++...|+++|||+|.++.||+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 57999999999999999995 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEehHhHHHHhcCC--cccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEEEeCC
Q 028875 120 MGDAEFDIKTYIEALKMN--LDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWIDLP 197 (202)
Q Consensus 120 lG~~~i~l~~l~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~~~~~ 197 (202)
+|.++|+|..+....... ..+.+.|+.+..+.+...+|.++++.+.+..|++.++.++++++.++|+++++++|++.+
T Consensus 84 mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~~~~ 163 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWIKLP 163 (168)
T ss_pred cceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEecCc
Confidence 999999999999887766 358889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 028875 198 GSKGL 202 (202)
Q Consensus 198 ~~~~~ 202 (202)
+.+|+
T Consensus 164 ~~~~~ 168 (168)
T KOG1030|consen 164 GSVGL 168 (168)
T ss_pred ccccC
Confidence 99875
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.97 E-value=1.2e-29 Score=186.52 Aligned_cols=143 Identities=59% Similarity=1.035 Sum_probs=135.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEE
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGD 122 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~ 122 (202)
|.|.|+|++|++|+..+.+.+||||++++++++++|++++++.||.|||+|.|.+.++...+.|+|||++.++.|++||+
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999888778999999999999999999999999999999999998887789999999999999999999
Q ss_pred EEEehHhHHHHhcCC-cccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccccee
Q 028875 123 AEFDIKTYIEALKMN-LDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECG 185 (202)
Q Consensus 123 ~~i~l~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G 185 (202)
+.+++.++....++. +...+.|+.+..|.|...+|+++++.+.+.+||+.++++++|+++++|
T Consensus 82 a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 82 AEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 999999999887776 778889999999999999999999999999999999999999999887
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.93 E-value=1.7e-25 Score=159.51 Aligned_cols=114 Identities=18% Similarity=0.364 Sum_probs=98.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecC-CCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccE
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKK-DVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG 121 (202)
|+|.|+|++|++++..+.+.+||||++.+++.+++|+++.+ +.||.|||+|.|.+.+....|.|+|||++.+++|++||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 79999999999987766789999999999999999999876 69999999999999866667999999999999999999
Q ss_pred EEEEehHh-HHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecc----cceeeEEEEEEE
Q 028875 122 DAEFDIKT-YIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRN----VECGELEIQLQW 193 (202)
Q Consensus 122 ~~~i~l~~-l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~G~i~l~l~~ 193 (202)
.+.+++.. +..+ + ..+.|++|.+ ...|+|||.|.|
T Consensus 82 ~~~i~l~~~~~~g------------------------------------~-~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFNG------------------------------------E-TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccCC------------------------------------C-CccccEeCcCccCCCCceEEEEEEeC
Confidence 99999963 4432 2 2388999987 457999999976
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.91 E-value=8.6e-24 Score=152.22 Aligned_cols=88 Identities=23% Similarity=0.501 Sum_probs=80.6
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeC------CCCcEEEEEEecCCCCCC
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITD------PNVPITLTVYDHDLFSKD 117 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~------~~~~L~i~V~d~~~~~~d 117 (202)
++|+|++|++|+.++ .+.+||||++++++.+++|++++++.||.|||+|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 479999999999988 7889999999999999999999999999999999999976 245699999999999889
Q ss_pred CccEEEEEehHhHHH
Q 028875 118 DRMGDAEFDIKTYIE 132 (202)
Q Consensus 118 ~~lG~~~i~l~~l~~ 132 (202)
++||++.++|+++..
T Consensus 81 ~~iG~~~i~l~~l~~ 95 (126)
T cd08682 81 KFLGQVSIPLNDLDE 95 (126)
T ss_pred ceeEEEEEEHHHhhc
Confidence 999999999998863
No 5
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.91 E-value=6.4e-23 Score=149.46 Aligned_cols=124 Identities=31% Similarity=0.525 Sum_probs=106.1
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCC
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFS 115 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~ 115 (202)
.....|.|.|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|||+|.|.+.+.. ..|.|+|||++.++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence 4556799999999999999988 889999999999999999999999999999999999997655 45999999999998
Q ss_pred CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEE
Q 028875 116 KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQW 193 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~ 193 (202)
.|++||++.+++.++...... ..+ ....|+.++++..|+|+|++.+
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~------------------------------~~~--~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKE------------------------------SKG--PITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhcccccc------------------------------CCC--cEEEEeccccccceeEEEEEEe
Confidence 999999999999998763210 001 2256788888899999999976
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.90 E-value=5.8e-23 Score=145.72 Aligned_cols=113 Identities=31% Similarity=0.506 Sum_probs=100.4
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCCCCCCCccE
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~lG 121 (202)
+++|+|++|++|+..+ .+.+||||++++++.+++|++++++.||.|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999988 78899999999999999999999999999999999999775 466999999999998999999
Q ss_pred EEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEEE
Q 028875 122 DAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWI 194 (202)
Q Consensus 122 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~~ 194 (202)
++.++|+++..+. ..+.|++|.+. .|+|+++++|.
T Consensus 81 ~~~~~l~~l~~~~-------------------------------------~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQ-------------------------------------THSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCC-------------------------------------ceEEEEEccCC-CcEEEEEEEec
Confidence 9999998776432 34889999865 69999999875
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.90 E-value=5.3e-23 Score=147.05 Aligned_cols=115 Identities=36% Similarity=0.530 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccE
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG 121 (202)
.|+|+|++|++|+..+ .+.+||||++++++ ..++|+++.++.||.|||+|.|.+......|.|+|||++.++++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3789999999999988 78999999999986 678999999999999999999999776777999999999999999999
Q ss_pred EEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc----eeeEEEEEEEEe
Q 028875 122 DAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE----CGELEIQLQWID 195 (202)
Q Consensus 122 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G~i~l~l~~~~ 195 (202)
++.++++++..+. ..+.|++|.+.. .|+|+|.+++.|
T Consensus 81 ~~~~~l~~l~~~~-------------------------------------~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNK-------------------------------------PTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCCC-------------------------------------CeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999887542 237788887443 699999999864
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.90 E-value=5.1e-23 Score=147.63 Aligned_cols=89 Identities=29% Similarity=0.508 Sum_probs=81.9
Q ss_pred EEEEEEEeec---CCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCC-----
Q 028875 45 LRIRIKRGVN---LAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFS----- 115 (202)
Q Consensus 45 L~v~v~~a~~---L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~----- 115 (202)
|+|+|++|++ |+.++ .|.+||||++++++++++|+++.++.||+|||+|.|.+.+....|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 78888 88999999999999999999999999999999999999877778999999998873
Q ss_pred -CCCccEEEEEehHhHHHH
Q 028875 116 -KDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 116 -~d~~lG~~~i~l~~l~~~ 133 (202)
.|++||++.++|+.+..+
T Consensus 82 ~~dd~lG~~~i~l~~l~~~ 100 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDD 100 (126)
T ss_pred CCCceEEEEEEEHHHccCC
Confidence 899999999999887654
No 9
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.90 E-value=4.6e-23 Score=147.07 Aligned_cols=113 Identities=34% Similarity=0.641 Sum_probs=100.4
Q ss_pred eEEEEEEEEeecCCCCCC-------CCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCCC
Q 028875 43 GLLRIRIKRGVNLAVRDV-------RSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDLF 114 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~-------~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~~ 114 (202)
|.|.|+|++|++|+..+. +.+||||++++++..++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998772 5799999999999999999999999999999999999753 46699999999988
Q ss_pred CCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEE
Q 028875 115 SKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQW 193 (202)
Q Consensus 115 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~ 193 (202)
++++||++.++++++.... ..+.|++|.+...|+|+++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~-------------------------------------~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKG-------------------------------------FIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccC-------------------------------------ccceEEECcCCCCceEEEEEeC
Confidence 8999999999999886532 2378999998889999999987
No 10
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.90 E-value=9.3e-23 Score=145.09 Aligned_cols=113 Identities=27% Similarity=0.475 Sum_probs=96.7
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecC-CCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCc
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKK-DVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~ 119 (202)
|.|.|+|++|++|+..+ .+.+||||++++++.+++|+++.+ +.||.|||.|.|.+.... ..|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 68999999999999988 789999999999998999998765 689999999999998643 56999999999875 899
Q ss_pred cEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc--ceeeEEEEEEE
Q 028875 120 MGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV--ECGELEIQLQW 193 (202)
Q Consensus 120 lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G~i~l~l~~ 193 (202)
||++.++++++..+.. .+.|++|... .+|+|+|+|+|
T Consensus 80 iG~~~~~l~~~~~~~~-------------------------------------~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGE-------------------------------------FDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCC-------------------------------------CCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999999866421 2568887654 47999999986
No 11
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=1.4e-22 Score=146.03 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=98.0
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC----CcEEEEEEecCCCC-CC
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN----VPITLTVYDHDLFS-KD 117 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~----~~L~i~V~d~~~~~-~d 117 (202)
.|.|+|++|++|+..+ .+.+||||++++++++++|+++.++.||.|||.|.|.+..+. ..|.|+|||++.+. .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3789999999999988 788999999999999999999999999999999999997543 45999999999886 89
Q ss_pred CccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc-----ceeeEEEEEE
Q 028875 118 DRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV-----ECGELEIQLQ 192 (202)
Q Consensus 118 ~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~i~l~l~ 192 (202)
++||++.++++++... +. ....|++|... .+|+|+|++.
T Consensus 81 ~~lG~v~i~l~~l~~~-----------------------------------~~-~~~~w~~L~~~~~~~~~~G~l~l~~~ 124 (127)
T cd04022 81 SFLGRVRISGTSFVPP-----------------------------------SE-AVVQRYPLEKRGLFSRVRGEIGLKVY 124 (127)
T ss_pred CeeeEEEEcHHHcCCC-----------------------------------CC-ccceEeEeeeCCCCCCccEEEEEEEE
Confidence 9999999999887621 11 23678888764 4899999997
Q ss_pred EE
Q 028875 193 WI 194 (202)
Q Consensus 193 ~~ 194 (202)
+.
T Consensus 125 ~~ 126 (127)
T cd04022 125 IT 126 (127)
T ss_pred Ec
Confidence 64
No 12
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.89 E-value=3e-22 Score=144.31 Aligned_cols=117 Identities=30% Similarity=0.602 Sum_probs=100.1
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeC-CCCcEEEEEEecCCCCCCC
Q 028875 43 GLLRIRIKRGVNLAVRD---VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITD-PNVPITLTVYDHDLFSKDD 118 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~ 118 (202)
|.|.|+|++|++|+..+ .+.+||||++++++.+++|++++++.||.|||+|.|.+.. ....|.|+|||++..+.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 68999999999999876 4689999999999999999999999999999999999986 3567999999999988999
Q ss_pred ccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc-------ceeeEEEEE
Q 028875 119 RMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV-------ECGELEIQL 191 (202)
Q Consensus 119 ~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-------~~G~i~l~l 191 (202)
+||++.++++++..... .+ ..+.|++|.+. .+|+|+|++
T Consensus 81 ~lG~~~i~l~~~~~~~~--------------------------------~~--~~~~w~~L~~~~~~~~~~~~G~i~l~~ 126 (128)
T cd04024 81 YLGEFDIALEEVFADGK--------------------------------TG--QSDKWITLKSTRPGKTSVVSGEIHLQF 126 (128)
T ss_pred cceEEEEEHHHhhcccc--------------------------------cC--ccceeEEccCcccCccccccceEEEEE
Confidence 99999999998874210 01 23678888765 489999999
Q ss_pred EE
Q 028875 192 QW 193 (202)
Q Consensus 192 ~~ 193 (202)
.|
T Consensus 127 ~~ 128 (128)
T cd04024 127 SW 128 (128)
T ss_pred EC
Confidence 87
No 13
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.89 E-value=2.5e-22 Score=143.63 Aligned_cols=112 Identities=22% Similarity=0.440 Sum_probs=96.2
Q ss_pred EEEEEEEeecCCCCC--CCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccE
Q 028875 45 LRIRIKRGVNLAVRD--VRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 45 L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG 121 (202)
|.|+|++|++|+..+ .+.+||||.+++++. .++|++++++.||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 678999999999874 578999999999865 57999999999999999999999865677999999999999999999
Q ss_pred EEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc-----eeeEEEEEEE
Q 028875 122 DAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE-----CGELEIQLQW 193 (202)
Q Consensus 122 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~i~l~l~~ 193 (202)
.+.++++++.... ..+.|++|.... +|+|||.+++
T Consensus 82 ~~~i~l~~l~~~~-------------------------------------~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKYY-------------------------------------GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCCC-------------------------------------CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 9999998876432 237899987532 7999999864
No 14
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.89 E-value=7.8e-22 Score=142.03 Aligned_cols=115 Identities=20% Similarity=0.358 Sum_probs=98.7
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC--CeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEE
Q 028875 45 LRIRIKRGVNLAVRDVRSSDPYVVVKMG--KQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGD 122 (202)
Q Consensus 45 L~v~v~~a~~L~~~~~~~~dpyv~v~~~--~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~ 122 (202)
|.|+|++|++|+. ..+.+||||+++++ ..+++|+++.++.||.|||.|.|.+......|.|+|||++..+++++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999988 67899999999997 36789999999999999999999997656679999999999989999999
Q ss_pred EEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc------ceeeEEEEEEEEeC
Q 028875 123 AEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV------ECGELEIQLQWIDL 196 (202)
Q Consensus 123 ~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~i~l~l~~~~~ 196 (202)
+.++++++..... ...|++|... ..|+|+++++|++-
T Consensus 80 ~~i~l~~l~~~~~-------------------------------------~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 80 AIVPFDELRKNPS-------------------------------------GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEeHHHhccCCc-------------------------------------eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999998876431 2567777643 48999999999875
Q ss_pred C
Q 028875 197 P 197 (202)
Q Consensus 197 ~ 197 (202)
+
T Consensus 123 ~ 123 (126)
T cd08678 123 A 123 (126)
T ss_pred c
Confidence 4
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.89 E-value=5.2e-22 Score=141.53 Aligned_cols=111 Identities=29% Similarity=0.467 Sum_probs=97.0
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCc
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~ 119 (202)
|.|+|++|++|+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+.... ..|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999888 7899999999986 35789999999999999999999987654 3489999999998 9999
Q ss_pred cEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEE
Q 028875 120 MGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQW 193 (202)
Q Consensus 120 lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~ 193 (202)
||++.++++++..+. ..+.|++|....+|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~-------------------------------------~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGE-------------------------------------KVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCC-------------------------------------cEEEEEECCCCCCceEEEEEEe
Confidence 999999999876532 3488999999889999998854
No 16
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.88 E-value=8.2e-22 Score=140.32 Aligned_cols=90 Identities=32% Similarity=0.557 Sum_probs=82.8
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccE
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG 121 (202)
|.|.|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|+|+|.|.+.+....+.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 68999999999999988 77899999999998889999999999999999999999765677999999999988999999
Q ss_pred EEEEehHhHHH
Q 028875 122 DAEFDIKTYIE 132 (202)
Q Consensus 122 ~~~i~l~~l~~ 132 (202)
++.+++.++..
T Consensus 81 ~~~~~l~~~~~ 91 (119)
T cd08377 81 KVAIPLLSIKN 91 (119)
T ss_pred EEEEEHHHCCC
Confidence 99999987753
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=8.9e-22 Score=145.62 Aligned_cols=89 Identities=28% Similarity=0.455 Sum_probs=80.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecC-CCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCcc
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKK-DVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~l 120 (202)
.|.|+|++|++|++.+ .|.+||||++++++++++|+++.+ +.||.|||+|.|.+.++. ..+.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 3789999999999998 789999999999999999999977 599999999999997654 4699999999998889999
Q ss_pred EEEEEehHhHHH
Q 028875 121 GDAEFDIKTYIE 132 (202)
Q Consensus 121 G~~~i~l~~l~~ 132 (202)
|++.++|+++..
T Consensus 81 G~v~i~L~~l~~ 92 (150)
T cd04019 81 GRAVIPLNDIER 92 (150)
T ss_pred EEEEEEHHHCcc
Confidence 999999998754
No 18
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.87 E-value=1.6e-21 Score=139.70 Aligned_cols=93 Identities=33% Similarity=0.565 Sum_probs=83.5
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC--eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCC
Q 028875 42 LGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMGK--QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKD 117 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d 117 (202)
.|.|.|+|++|++|+..+ .+.+||||++++++ ..++|+++.++.||.|||.|.|.+......|.|+|||++..+.|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 378999999999999665 46789999999987 78899999999999999999999986567799999999998899
Q ss_pred CccEEEEEehHhHHHHh
Q 028875 118 DRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 118 ~~lG~~~i~l~~l~~~~ 134 (202)
++||.+.+++.++....
T Consensus 81 ~~iG~~~~~l~~l~~~~ 97 (124)
T cd04044 81 KLIGTAEFDLSSLLQNP 97 (124)
T ss_pred ceeEEEEEEHHHhccCc
Confidence 99999999999988653
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.87 E-value=2.5e-21 Score=138.46 Aligned_cols=112 Identities=31% Similarity=0.520 Sum_probs=95.6
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEE
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGD 122 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~ 122 (202)
|.|+|++|++|+..+ .+.+||||++++++. ..+|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999999 889999999999865 469999999999999999999997666779999999999999999999
Q ss_pred EEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc-----eeeEEEEEE
Q 028875 123 AEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE-----CGELEIQLQ 192 (202)
Q Consensus 123 ~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~i~l~l~ 192 (202)
+.++++.+.... + ..+.|++|++.. .|+|+|.++
T Consensus 82 ~~~~~~~~~~~~-----------------------------------~-~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHP-----------------------------------R-GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCC-----------------------------------C-CCCcEEECeeeCCCCccccEEEEEEE
Confidence 999988765321 1 237799997643 799998875
No 20
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.87 E-value=2.8e-21 Score=140.21 Aligned_cols=120 Identities=25% Similarity=0.494 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCe-------EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCC
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQ-------KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFS 115 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~ 115 (202)
.|+|+|++|++|+..+ .+.+||||++++.+. .++|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 3789999999999988 788999999999753 57999999999999999999999765667999999999998
Q ss_pred CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc-----ceeeEEEE
Q 028875 116 KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV-----ECGELEIQ 190 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~i~l~ 190 (202)
++++||++.++++++...... +.......|++|+.. ..|+|+|.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~G~l~~~ 129 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPG-------------------------------NERRYTFKDYLLRPRSSKSRVKGHLRLY 129 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCcc-------------------------------ccccccchheeeeecCCCCcceeEEEEE
Confidence 999999999999988754210 001124668887743 48999999
Q ss_pred EEEE
Q 028875 191 LQWI 194 (202)
Q Consensus 191 l~~~ 194 (202)
+.|+
T Consensus 130 ~~~~ 133 (133)
T cd04033 130 MAYL 133 (133)
T ss_pred EeeC
Confidence 9874
No 21
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.87 E-value=3.3e-21 Score=143.84 Aligned_cols=116 Identities=26% Similarity=0.408 Sum_probs=97.8
Q ss_pred cceEEEEEEEEeecCCCCC-------------------------------CCCCCcEEEEEECCeE-EeceeecCCCCCe
Q 028875 41 LLGLLRIRIKRGVNLAVRD-------------------------------VRSSDPYVVVKMGKQK-LKTRVIKKDVNPE 88 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~ 88 (202)
..|+|.|+|.+|++|+.+| .|.+||||++++++.+ .+|+++.++.||.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 4699999999999999875 2457999999999755 5999999999999
Q ss_pred EeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeC
Q 028875 89 WNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKE 168 (202)
Q Consensus 89 w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 168 (202)
|||+|.|.+......|.|+|||++.+ .+++||++.++++++..+.
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~---------------------------------- 129 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGE---------------------------------- 129 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCC----------------------------------
Confidence 99999999877677899999999988 5689999999999876432
Q ss_pred CcEEEEEEEEeccc------ceeeEEEEEEEE
Q 028875 169 GKVVQDLVLRLRNV------ECGELEIQLQWI 194 (202)
Q Consensus 169 g~~~~~~~~~l~~~------~~G~i~l~l~~~ 194 (202)
..+.|++|.+. ..|+|+|+++|+
T Consensus 130 ---~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 130 ---PVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ---CcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 23789988653 258999999984
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=7.3e-21 Score=136.96 Aligned_cols=113 Identities=20% Similarity=0.391 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCcc
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~l 120 (202)
..|+|+|++|++|+.. +.+||||++++++. ..+|++. ++.||.|||+|.|.+..+. ..+.|.|||++..+++++|
T Consensus 4 ~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 4 RSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred eEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 4699999999999875 47899999999874 4688874 6899999999999876554 4689999999999999999
Q ss_pred EEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc------ceeeEEEEEEEE
Q 028875 121 GDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV------ECGELEIQLQWI 194 (202)
Q Consensus 121 G~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~i~l~l~~~ 194 (202)
|.+.++|+.+..+. ..+.|++|... ..|+|+|+++|.
T Consensus 81 G~v~i~l~~l~~~~-------------------------------------~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 81 AEVTVQLSKLQNGQ-------------------------------------ETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEEHhHccCCC-------------------------------------cccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 99999998776532 23779888653 359999999997
Q ss_pred e
Q 028875 195 D 195 (202)
Q Consensus 195 ~ 195 (202)
+
T Consensus 124 ~ 124 (126)
T cd08400 124 H 124 (126)
T ss_pred c
Confidence 5
No 23
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.86 E-value=1.1e-20 Score=137.06 Aligned_cols=117 Identities=26% Similarity=0.419 Sum_probs=99.6
Q ss_pred cceEEEEEEEEeecCCCCCC-----------CCCCcEEEEEECCeE-EeceeecCCCCCeEeeeeEEEEeCCCCcEEEEE
Q 028875 41 LLGLLRIRIKRGVNLAVRDV-----------RSSDPYVVVKMGKQK-LKTRVIKKDVNPEWNEDLTLSITDPNVPITLTV 108 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~-----------~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V 108 (202)
..|.|+|+|++|++|...+. +.+||||++++++.+ .+|+++.++.||.|||+|.|.+. ....|.|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v 80 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTV 80 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEE
Confidence 35899999999999988773 478999999999765 59999999999999999999996 456799999
Q ss_pred EecCCCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEE
Q 028875 109 YDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELE 188 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~ 188 (202)
||++.++.+++||++.++|+++.... +. ..+.|++|. ..|+|+
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~----------------------------------~~-~~~~w~~L~--~~G~l~ 123 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRG----------------------------------SG-SFDLWVDLE--PQGKLH 123 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccC----------------------------------CC-cccEEEEcc--CCcEEE
Confidence 99998888999999999999887631 11 248899998 569999
Q ss_pred EEEEEEe
Q 028875 189 IQLQWID 195 (202)
Q Consensus 189 l~l~~~~ 195 (202)
|+++|..
T Consensus 124 l~~~~~~ 130 (132)
T cd04014 124 VKIELKG 130 (132)
T ss_pred EEEEEec
Confidence 9998864
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=3e-21 Score=138.03 Aligned_cols=114 Identities=29% Similarity=0.482 Sum_probs=95.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCCCCCCCccEE
Q 028875 44 LLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDLFSKDDRMGD 122 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~lG~ 122 (202)
.|.|+|++|++|+.. .+||||++++++.+.+|++++++.||.|||+|.|.+... ...|.|+|||++.. .+++||+
T Consensus 1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 378999999999887 789999999999999999999999999999999998764 45699999999987 8899999
Q ss_pred EEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc----eeeEEEEEEE
Q 028875 123 AEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE----CGELEIQLQW 193 (202)
Q Consensus 123 ~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G~i~l~l~~ 193 (202)
+.++++++..... .++. ..+.|++|.... +|+|+|.+.|
T Consensus 77 ~~i~l~~l~~~~~-------------------------------~~~~-~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVP-------------------------------PDSP-LAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCC-------------------------------CCCC-CCcceEEccCCCCCccceEEEEEEEe
Confidence 9999998754310 0011 236799987755 6999999976
No 25
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.86 E-value=6.5e-21 Score=136.59 Aligned_cols=89 Identities=36% Similarity=0.600 Sum_probs=81.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCccE
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~lG 121 (202)
+|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+.... ..|.|+|||++.++.+++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4889999999999988 678999999999999999999999999999999999997654 55999999999998999999
Q ss_pred EEEEehHhHHH
Q 028875 122 DAEFDIKTYIE 132 (202)
Q Consensus 122 ~~~i~l~~l~~ 132 (202)
++.++|+++..
T Consensus 81 ~~~~~l~~l~~ 91 (123)
T cd04025 81 KVVFSIQTLQQ 91 (123)
T ss_pred EEEEEHHHccc
Confidence 99999998865
No 26
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=5.8e-21 Score=135.87 Aligned_cols=90 Identities=16% Similarity=0.299 Sum_probs=78.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEEC-----C--eEEeceeecCCCCCeEeeeeEEEEeCCC----CcEEEEEEecC
Q 028875 44 LLRIRIKRGVNLAVRDVRSSDPYVVVKMG-----K--QKLKTRVIKKDVNPEWNEDLTLSITDPN----VPITLTVYDHD 112 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-----~--~~~~T~~~~~t~~P~w~e~f~f~v~~~~----~~L~i~V~d~~ 112 (202)
.|+|+|++|++|+..+.|.+||||++++. . ++++|+++.++.||+|||+|.|.+.... ..|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 48999999999998878899999999973 1 3578999999999999999999997532 34899999999
Q ss_pred CCCCCCccEEEEEehHhHHHH
Q 028875 113 LFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l~~l~~~ 133 (202)
..+++++||++.+++.++..+
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~ 101 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQA 101 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCC
Confidence 888899999999999988754
No 27
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.86 E-value=1.9e-20 Score=134.87 Aligned_cols=116 Identities=18% Similarity=0.307 Sum_probs=99.8
Q ss_pred EEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEecCCCCCCCccEEEEE
Q 028875 49 IKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYDHDLFSKDDRMGDAEF 125 (202)
Q Consensus 49 v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d~~~~~~d~~lG~~~i 125 (202)
|++|++|+. ..+.+||||++++++.+++|++++++.||.|||+|.|.+... ...|.|+|||++..+++++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 688999988 667899999999999999999999999999999999999753 4669999999999989999999999
Q ss_pred ehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc----eeeEEEEEEEEeCCCCCC
Q 028875 126 DIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE----CGELEIQLQWIDLPGSKG 201 (202)
Q Consensus 126 ~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G~i~l~l~~~~~~~~~~ 201 (202)
+++++..+. ....|++|.+.. .|+|++.++|.+..++.|
T Consensus 81 ~l~~l~~~~-------------------------------------~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 81 SLQDLVSEG-------------------------------------LLEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred EhhHcccCC-------------------------------------ceEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 999887532 237788886432 689999999999998776
Q ss_pred C
Q 028875 202 L 202 (202)
Q Consensus 202 ~ 202 (202)
+
T Consensus 124 ~ 124 (127)
T cd08373 124 G 124 (127)
T ss_pred C
Confidence 4
No 28
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.85 E-value=1.8e-20 Score=134.93 Aligned_cols=88 Identities=22% Similarity=0.468 Sum_probs=81.0
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCcc
Q 028875 42 LGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~l 120 (202)
..+|+|+|++|++|...+ .+.+||||++.++++.++|++++++.||.|||.|.|.+.+....|.|+|||++.. .|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 468999999999999888 7899999999999999999999999999999999999887777899999999987 58999
Q ss_pred EEEEEehHhH
Q 028875 121 GDAEFDIKTY 130 (202)
Q Consensus 121 G~~~i~l~~l 130 (202)
|.+.+++.++
T Consensus 81 G~~~~~l~~~ 90 (126)
T cd04046 81 GQATLSADPN 90 (126)
T ss_pred EEEEEecccC
Confidence 9999999754
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=4.4e-21 Score=135.20 Aligned_cols=92 Identities=17% Similarity=0.322 Sum_probs=81.5
Q ss_pred ccccceEEEEEEEEeecCCCCCCCCCCcEEEEEECC----eEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEEEe
Q 028875 38 METLLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGK----QKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTVYD 110 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V~d 110 (202)
|.+..+.|+|+|++|++|+ . .+.+||||++++.. .+++|+++++|+||+|||+|.|.+...+ ..|.|+|||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 7788999999999999998 3 35699999999963 5779999999999999999999987533 559999999
Q ss_pred cCCCCCCCccEEEEEehHhHH
Q 028875 111 HDLFSKDDRMGDAEFDIKTYI 131 (202)
Q Consensus 111 ~~~~~~d~~lG~~~i~l~~l~ 131 (202)
+|.++++++||++.++++++.
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCCCceEEEEEEcccccc
Confidence 999999999999999998763
No 30
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.85 E-value=2.4e-20 Score=130.63 Aligned_cols=93 Identities=24% Similarity=0.456 Sum_probs=83.2
Q ss_pred eEEEEEEEEeecCCCCC-C----CCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC--CcEEEEEEecCCCC
Q 028875 43 GLLRIRIKRGVNLAVRD-V----RSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN--VPITLTVYDHDLFS 115 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~----~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~--~~L~i~V~d~~~~~ 115 (202)
|+|.|+|++|++|+..+ . +.+||||++++++.+++|++++++.||+|||.|.|.+.+.. ..|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999876 2 24899999999999999999999999999999999987543 35899999999999
Q ss_pred CCCccEEEEEehHhHHHHhc
Q 028875 116 KDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~~~ 135 (202)
+|++||++.++|+++..+..
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999988653
No 31
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.85 E-value=2.9e-20 Score=129.64 Aligned_cols=86 Identities=22% Similarity=0.501 Sum_probs=78.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCccEE
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDRMGD 122 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~lG~ 122 (202)
|.|+|++|++|+..+ .+.+||||++++++++++|+++.++.||.|||.|.|.+.++. ..|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 789999999999988 789999999999999999999999999999999999998754 559999999876 789999
Q ss_pred EEEehHhHHHH
Q 028875 123 AEFDIKTYIEA 133 (202)
Q Consensus 123 ~~i~l~~l~~~ 133 (202)
+.++|.++...
T Consensus 79 ~~i~l~~l~~~ 89 (105)
T cd04050 79 LTLPLSELLKE 89 (105)
T ss_pred EEEEHHHhhcc
Confidence 99999988753
No 32
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.85 E-value=8.2e-21 Score=135.94 Aligned_cols=92 Identities=26% Similarity=0.369 Sum_probs=81.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeC----CCCcEEEEEEecC
Q 028875 42 LGLLRIRIKRGVNLAVRDVRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITD----PNVPITLTVYDHD 112 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~----~~~~L~i~V~d~~ 112 (202)
.+.|.|+|++|++|+..+.+.+||||++++. ..+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 5889999999999999887789999999996 347899999999999999999998732 2356999999999
Q ss_pred CCCCCCccEEEEEehHhHHHH
Q 028875 113 LFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l~~l~~~ 133 (202)
.++++++||++.++|+++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 998999999999999887643
No 33
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.84 E-value=4.6e-20 Score=132.98 Aligned_cols=87 Identities=31% Similarity=0.571 Sum_probs=78.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCC--------
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLF-------- 114 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~-------- 114 (202)
.|+|+|++|++|+..+ .+.+||||++++++..++|+++.++.||.|||+|.|.+......|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 6899999999999988 7889999999999889999999999999999999999876666799999999853
Q ss_pred ---CCCCccEEEEEehHhH
Q 028875 115 ---SKDDRMGDAEFDIKTY 130 (202)
Q Consensus 115 ---~~d~~lG~~~i~l~~l 130 (202)
+.+++||++.+++.++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~ 100 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTL 100 (127)
T ss_pred ccccCCCcceEEEEEhHHc
Confidence 4689999999999865
No 34
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=1.7e-20 Score=137.63 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=80.6
Q ss_pred cceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC--C---eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEE-ecC
Q 028875 41 LLGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMG--K---QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVY-DHD 112 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~-d~~ 112 (202)
..+.|.|+|++|+||++.+ .+.+||||++++. + .+++|++++++.||+|||+|.|.+...+..|.|+|| |++
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 3589999999999999864 6789999999995 2 378999999999999999999999865677999999 678
Q ss_pred CCCCCCccEEEEEehHhHHH
Q 028875 113 LFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l~~l~~ 132 (202)
.++++++||++.|+|+++..
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~ 126 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDL 126 (146)
T ss_pred CCCCCceEEEEEEEcccccC
Confidence 88899999999999987643
No 35
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.84 E-value=1e-19 Score=130.77 Aligned_cols=116 Identities=29% Similarity=0.439 Sum_probs=96.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC---eEEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCCCCCCC
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK---QKLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDLFSKDD 118 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~ 118 (202)
.|+|+|++|++|+..+ .+.+||||++.+.+ ..++|++++++.||.|||+|.|.+... ...|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999988 78899999999864 367999999999999999999999874 356999999999988999
Q ss_pred ccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEEEe
Q 028875 119 RMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWID 195 (202)
Q Consensus 119 ~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~~~ 195 (202)
+||++.++|+++.... +|. ..+.|++|.. .|++++++.+..
T Consensus 82 ~iG~~~i~l~~~~~~~---------------------------------~~~-~~~~w~~l~~--~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGD---------------------------------DGL-PREIWLDLDT--QGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCC---------------------------------CCC-CceEEEEcCC--CCeEEEEEEEee
Confidence 9999999998765421 011 2478999975 699999987643
No 36
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.84 E-value=1.9e-20 Score=134.60 Aligned_cols=96 Identities=27% Similarity=0.434 Sum_probs=84.0
Q ss_pred ccccceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~ 107 (202)
|.+..+.|.|+|++|+||+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 6678899999999999999886 4789999999985 2367999999999999999999998653 3569999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
|||++.++++++||++.++|.++...
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCccccc
Confidence 99999999999999999999877654
No 37
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.83 E-value=4.6e-20 Score=129.94 Aligned_cols=91 Identities=38% Similarity=0.666 Sum_probs=81.4
Q ss_pred eEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEEecCC
Q 028875 43 GLLRIRIKRGVNLAVRD-V-RSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVYDHDL 113 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~d~~~ 113 (202)
|+|.|+|++|++|+..+ . +.+||||++++. +..++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 68999999999999988 5 899999999985 3568999999999999999999988653 3569999999999
Q ss_pred CCCCCccEEEEEehHhHHHH
Q 028875 114 FSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 114 ~~~d~~lG~~~i~l~~l~~~ 133 (202)
++.|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 98999999999999999853
No 38
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.83 E-value=1.1e-19 Score=132.37 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=95.4
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC----------CCcEEEEEEecC
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP----------NVPITLTVYDHD 112 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~----------~~~L~i~V~d~~ 112 (202)
.|+|+|++|++|+.++ .+.+||||++.+++.+++|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999988 78999999999999999999999999999999999975321 135899999999
Q ss_pred CCCCCCccEEEEEeh-HhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc--ceeeEEE
Q 028875 113 LFSKDDRMGDAEFDI-KTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV--ECGELEI 189 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l-~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G~i~l 189 (202)
..++|++||++.+.. ..+.... .+. ....|++|... ..|+|.|
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~---------------------------------~~~-~~~~W~~L~~~~~~~Geil~ 127 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEE---------------------------------DFP-PKLQWFPIYKGGQSAGELLA 127 (135)
T ss_pred CCCCCccceEEEeeeeeecccCC---------------------------------CCC-CCceEEEeecCCCchhheeE
Confidence 998999999998743 2111100 011 23779998743 4799999
Q ss_pred EEEEEeC
Q 028875 190 QLQWIDL 196 (202)
Q Consensus 190 ~l~~~~~ 196 (202)
.++++++
T Consensus 128 ~~~~~~~ 134 (135)
T cd04017 128 AFELIEV 134 (135)
T ss_pred EeEEEEe
Confidence 9999875
No 39
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=8.5e-20 Score=129.92 Aligned_cols=87 Identities=20% Similarity=0.367 Sum_probs=78.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEE
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGD 122 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~ 122 (202)
+.|.|+|++|++|+..+ ..||||++++++.+.+|++.++ .||.|||.|.|.+.+.+..|.|+|||++.+ .|++||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 68999999999997654 5689999999999999999987 599999999999987777799999999977 9999999
Q ss_pred EEEehHhHHHH
Q 028875 123 AEFDIKTYIEA 133 (202)
Q Consensus 123 ~~i~l~~l~~~ 133 (202)
+.|+|+++..+
T Consensus 78 v~i~L~~v~~~ 88 (127)
T cd08394 78 VWIPLSTIRQS 88 (127)
T ss_pred EEEEhHHcccC
Confidence 99999988764
No 40
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.83 E-value=1.1e-19 Score=130.21 Aligned_cols=88 Identities=30% Similarity=0.528 Sum_probs=79.7
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEEC-CeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCC--CCcc
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMG-KQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSK--DDRM 120 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~--d~~l 120 (202)
|+|+|++|++|+..+ .+.+||||+++++ ...++|++++++.||.|||+|.|.+.. ...|.|+|||++.++. +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 789999999999988 7899999999997 678899999999999999999999975 6679999999998864 5799
Q ss_pred EEEEEehHhHHHH
Q 028875 121 GDAEFDIKTYIEA 133 (202)
Q Consensus 121 G~~~i~l~~l~~~ 133 (202)
|++.++++++...
T Consensus 81 G~~~i~l~~l~~~ 93 (123)
T cd08382 81 GCVRIRANAVLPL 93 (123)
T ss_pred eEEEEEHHHcccc
Confidence 9999999998754
No 41
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.83 E-value=4.9e-20 Score=132.20 Aligned_cols=96 Identities=25% Similarity=0.517 Sum_probs=84.8
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEe
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYD 110 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d 110 (202)
+.+..+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 5667899999999999999988 7889999999984 4568999999999999999999998653 3569999999
Q ss_pred cCCCCCCCccEEEEEehHhHHHH
Q 028875 111 HDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 111 ~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
++.++++++||++.++|+++..+
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~ 113 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLS 113 (124)
T ss_pred CCCCCCCceeEEEEEecccccCC
Confidence 99998999999999999987643
No 42
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.83 E-value=2.3e-20 Score=134.19 Aligned_cols=96 Identities=28% Similarity=0.442 Sum_probs=83.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-V-RSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~ 107 (202)
|.+..+.|.|+|++|+||++++ . +.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.|+
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 5566789999999999999998 4 789999999985 2457999999999999999999998642 3569999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
|||++.++++++||++.++|.++...
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccC
Confidence 99999999999999999999877543
No 43
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.82 E-value=7.9e-20 Score=128.51 Aligned_cols=88 Identities=33% Similarity=0.631 Sum_probs=80.5
Q ss_pred EEEEEEEeecCCCCC--CCCCCcEEEEEECCeEEeceeecCCCCCeE-eeeeEEEEeCC---CCcEEEEEEecCCCCCCC
Q 028875 45 LRIRIKRGVNLAVRD--VRSSDPYVVVKMGKQKLKTRVIKKDVNPEW-NEDLTLSITDP---NVPITLTVYDHDLFSKDD 118 (202)
Q Consensus 45 L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-~e~f~f~v~~~---~~~L~i~V~d~~~~~~d~ 118 (202)
|.|+|++|++|+.++ .+.+||||++++++.+++|++++++.||.| ||+|.|.+... +..|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 579999999999887 578999999999999999999999999999 99999999764 356999999999998999
Q ss_pred ccEEEEEehHhHHH
Q 028875 119 RMGDAEFDIKTYIE 132 (202)
Q Consensus 119 ~lG~~~i~l~~l~~ 132 (202)
+||++.+++.++..
T Consensus 81 ~iG~~~~~l~~l~~ 94 (110)
T cd08688 81 AIGKVYIDLNPLLL 94 (110)
T ss_pred ceEEEEEeHHHhcc
Confidence 99999999999876
No 44
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=3.1e-19 Score=125.68 Aligned_cols=100 Identities=25% Similarity=0.387 Sum_probs=87.0
Q ss_pred CCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCccEEEEEehHhHHHHhcCC
Q 028875 60 VRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMN 137 (202)
Q Consensus 60 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 137 (202)
+|.+||||+++++++ ..+|+++.++.||.|||.|.|.+.+.. ..|.|.|||++.+ ++++||.+.++|+++.....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence 678999999999874 579999999999999999999997654 5599999999999 99999999999999865321
Q ss_pred cccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEEEeC
Q 028875 138 LDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWIDL 196 (202)
Q Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~~~~ 196 (202)
..+.|++|.+...|+|+++++|.|+
T Consensus 87 ----------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 87 ----------------------------------VGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred ----------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence 2378999998889999999999874
No 45
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.82 E-value=1.1e-19 Score=130.25 Aligned_cols=95 Identities=33% Similarity=0.486 Sum_probs=83.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEe
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYD 110 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d 110 (202)
+....+.|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 5667789999999999999888 7789999999985 3567999999999999999999998653 3569999999
Q ss_pred cCCCCCCCccEEEEEehHhHHH
Q 028875 111 HDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 111 ~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
++.++++++||++.++++++..
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred CCCCCCCceeEEEEEecCcccC
Confidence 9999899999999999987644
No 46
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.82 E-value=7.6e-20 Score=131.89 Aligned_cols=95 Identities=26% Similarity=0.326 Sum_probs=83.6
Q ss_pred ccccceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-V-RSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~ 107 (202)
|....+.|.|+|++|+||++.+ . +.+||||++++. ..+++|++++++.||+|||+|.|.+... ...|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 5667789999999999999988 4 899999999986 2467999999999999999999998653 3569999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
|||.+.++++++||++.|+|+++.-
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCccc
Confidence 9999999899999999999987743
No 47
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=5.1e-19 Score=126.29 Aligned_cols=91 Identities=35% Similarity=0.585 Sum_probs=83.5
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCcc
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~l 120 (202)
|.|.|+|++|++|+..+ .+.+||||++++++ ..++|+++.++.||.|||.|.|.+......|.|+|||++.++.|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999988 78999999999976 56899999999999999999999987777899999999999899999
Q ss_pred EEEEEehHhHHHH
Q 028875 121 GDAEFDIKTYIEA 133 (202)
Q Consensus 121 G~~~i~l~~l~~~ 133 (202)
|++.+++.++...
T Consensus 81 G~~~~~l~~l~~~ 93 (120)
T cd04045 81 GSVEINVSDLIKK 93 (120)
T ss_pred eEEEEeHHHhhCC
Confidence 9999999998764
No 48
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.81 E-value=1.2e-19 Score=130.07 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=84.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C----eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG--K----QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~----~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~ 107 (202)
|.+..+.|.|+|++|+||+..+ .+.+||||++++. . .+++|++++++.||+|||+|.|++... +..|.|+
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 6778899999999999999988 7789999999986 2 378999999999999999999998753 3569999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
|||.+.++++++||.+.|+|+++..
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccC
Confidence 9999999999999999999987743
No 49
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=1.7e-19 Score=129.44 Aligned_cols=92 Identities=27% Similarity=0.462 Sum_probs=81.7
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeC----CCCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITD----PNVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~----~~~~L~i~ 107 (202)
+.+..+.|.|+|++|++|+..+ .+.+||||++++.. .+++|++++++.||.|||+|.|.+.. ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 5667789999999999999988 77899999999863 57799999999999999999998644 23569999
Q ss_pred EEecCCCCCCCccEEEEEehHh
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~ 129 (202)
|||++.++.+++||++.++|++
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred EEeCCCCCCCcEeeEEEEeccc
Confidence 9999999899999999999987
No 50
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=9.6e-20 Score=134.27 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=77.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeC----------------CCC
Q 028875 44 LLRIRIKRGVNLAVRDVRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITD----------------PNV 102 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~----------------~~~ 102 (202)
.|.|+|++|++|+. ..|.+||||++++.. .+++|++++++.||+|||+|.|.+.. ...
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 37899999999988 568899999999975 57899999999999999999999951 114
Q ss_pred cEEEEEEecCCCCCCCccEEEEEehHhHHHH
Q 028875 103 PITLTVYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 103 ~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
.|.|.|||++.++.|+|||++.|++.++..+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 5899999999988999999999999887654
No 51
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.80 E-value=3.1e-19 Score=128.46 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=83.4
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V 108 (202)
+.+..+.|+|+|++|++|+..+ .+.+||||++.+. ..+++|++++++.||.|||+|.|.+... ...|.|.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 5667789999999999999998 7899999999986 4678999999999999999999998643 25699999
Q ss_pred EecCCC--CCCCccEEEEEehHhHHH
Q 028875 109 YDHDLF--SKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 109 ~d~~~~--~~d~~lG~~~i~l~~l~~ 132 (202)
||++.+ +++++||++.++|+++..
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDL 116 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccc
Confidence 999875 689999999999998754
No 52
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.80 E-value=1.4e-18 Score=124.63 Aligned_cols=91 Identities=33% Similarity=0.605 Sum_probs=82.8
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecC-CCCCeEeeeeEEEEeCC----CCcEEEEEEecCCCCC
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKK-DVNPEWNEDLTLSITDP----NVPITLTVYDHDLFSK 116 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~f~f~v~~~----~~~L~i~V~d~~~~~~ 116 (202)
|.|.|+|++|++|+..+ .+.+||||++++++..++|++..+ +.||.|||+|.|.+..+ ...|.|+|||++.++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 68999999999999888 778999999999988899998875 89999999999999876 3569999999999989
Q ss_pred CCccEEEEEehHhHHHH
Q 028875 117 DDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 117 d~~lG~~~i~l~~l~~~ 133 (202)
+++||++.++++++...
T Consensus 81 d~~iG~~~i~l~~l~~~ 97 (124)
T cd04049 81 DDFIGEATIHLKGLFEE 97 (124)
T ss_pred CCeEEEEEEEhHHhhhC
Confidence 99999999999998764
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.80 E-value=2.4e-19 Score=127.78 Aligned_cols=92 Identities=16% Similarity=0.325 Sum_probs=79.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCCC--CcEEEEEEecCC
Q 028875 41 LLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDPN--VPITLTVYDHDL 113 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~~--~~L~i~V~d~~~ 113 (202)
..+.|.|+|++|+||++++.+.+||||++++.. .+.+|++++++.||.|||+|.|.+...+ ..|.|+|||++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468999999999999988878899999999862 4679999999999999999999986532 458999999988
Q ss_pred CC-CCCccEEEEEehHhHHH
Q 028875 114 FS-KDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 114 ~~-~d~~lG~~~i~l~~l~~ 132 (202)
.. ++++||.+.++|.++..
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred CcCCCEEEEEEEecHHHhcc
Confidence 75 47899999999998864
No 54
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.80 E-value=5.6e-19 Score=126.85 Aligned_cols=91 Identities=24% Similarity=0.389 Sum_probs=81.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-eEEeceeec-CCCCCeEeeeeEEEEeCC-----CCcEEEEEEecCCCC
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-QKLKTRVIK-KDVNPEWNEDLTLSITDP-----NVPITLTVYDHDLFS 115 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~w~e~f~f~v~~~-----~~~L~i~V~d~~~~~ 115 (202)
.|+|+|++|++|+..+ .+.+||||++++++ .+++|+++. ++.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999999999888 78999999999987 888999976 479999999999999876 466999999999988
Q ss_pred CCCccEEEEEehHhHHHHh
Q 028875 116 KDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~~ 134 (202)
.+++||++.+++.++....
T Consensus 81 ~~~~lG~~~i~l~~l~~~~ 99 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGA 99 (125)
T ss_pred CCCcEEEEEEEHHHhhccc
Confidence 9999999999999998754
No 55
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.80 E-value=6.7e-19 Score=123.94 Aligned_cols=90 Identities=27% Similarity=0.333 Sum_probs=80.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC-----CcEEEEEEecCCCC
Q 028875 41 LLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN-----VPITLTVYDHDLFS 115 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~-----~~L~i~V~d~~~~~ 115 (202)
....|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||+|.|.+..+. ..|.|+|||++.++
T Consensus 2 ~~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 2 QDFQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred CcEEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 3468999999999998 468999999999999999999999999999999999986532 46999999999998
Q ss_pred CCCccEEEEEehHhHHHH
Q 028875 116 KDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~ 133 (202)
++++||++.++|+++...
T Consensus 79 ~~~~iG~~~i~l~~v~~~ 96 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQ 96 (111)
T ss_pred cCCccEEEEECCccccCC
Confidence 899999999999887653
No 56
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.80 E-value=1.4e-18 Score=125.39 Aligned_cols=95 Identities=27% Similarity=0.420 Sum_probs=81.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEE-EeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-V-RSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLS-ITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~-v~~~---~~~L~i~V 108 (202)
|....+.|.|+|++|++|+..+ . +.+||||++.+. .++.+|++++++.||.|||+|.|. +... +..|.|+|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 5667789999999999999988 4 889999999985 456799999999999999999994 4321 24599999
Q ss_pred EecCCCCCCCccEEEEEehHhHHH
Q 028875 109 YDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
||++.++++++||++.++|+++..
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCC
Confidence 999999999999999999987644
No 57
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.80 E-value=6.9e-19 Score=126.41 Aligned_cols=93 Identities=27% Similarity=0.377 Sum_probs=81.4
Q ss_pred cccceEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeC--CCCcEEEEEEecCCCCC
Q 028875 39 ETLLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITD--PNVPITLTVYDHDLFSK 116 (202)
Q Consensus 39 ~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~--~~~~L~i~V~d~~~~~~ 116 (202)
....+.|+|+|++|++|+....+.+||||++++++.+++|++++++.||+|||+|.|.... ....|.|+|||++.+++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~ 103 (127)
T cd04032 24 RRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWD 103 (127)
T ss_pred cCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCC
Confidence 3467899999999999985337789999999999899999999999999999999997543 24669999999999999
Q ss_pred CCccEEEEEehHhHH
Q 028875 117 DDRMGDAEFDIKTYI 131 (202)
Q Consensus 117 d~~lG~~~i~l~~l~ 131 (202)
|++||++.++|+...
T Consensus 104 dd~IG~~~i~l~~~~ 118 (127)
T cd04032 104 DDLLGTCSVVPEAGV 118 (127)
T ss_pred CCeeEEEEEEecCCc
Confidence 999999999997544
No 58
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.5e-18 Score=128.26 Aligned_cols=89 Identities=33% Similarity=0.481 Sum_probs=80.1
Q ss_pred EEEEEEEeecCCCCC-C--------------CCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC--CCcEEEE
Q 028875 45 LRIRIKRGVNLAVRD-V--------------RSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP--NVPITLT 107 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~--------------~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~--~~~L~i~ 107 (202)
|.|+|++|++|+.++ . +.+||||++.+++.+.+|++++++.||+|||+|.|.+..+ ...|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999987 3 2589999999999999999999999999999999997543 3569999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
|||++..++|++||++.+++.++...
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccC
Confidence 99999999999999999999988764
No 59
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.79 E-value=5.6e-18 Score=124.09 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=94.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEE-eceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCC----C
Q 028875 41 LLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKL-KTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLF----S 115 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~-~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~----~ 115 (202)
....|.|.|++|++|+.++ +|||.+.+++..+ ||+++.++.||.|+|.|.|........+.|.||..+.. .
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 4578999999999998754 8999999999875 99999999999999999998776667799999865432 1
Q ss_pred CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc------------
Q 028875 116 KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE------------ 183 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~------------ 183 (202)
.+++||.+.|+++++..+. ..+.||+|.+..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~-------------------------------------~ve~Wfpl~~~~~~~~~~~~~~~~ 127 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQ-------------------------------------FVEKWYPVSTPKGNGKSGGKEGKG 127 (146)
T ss_pred CCcEEEEEEEEHHHhcCCC-------------------------------------cccEEEEeecCCCCCccccccccC
Confidence 5789999999999887432 236677776533
Q ss_pred -eeeEEEEEEEEeCC
Q 028875 184 -CGELEIQLQWIDLP 197 (202)
Q Consensus 184 -~G~i~l~l~~~~~~ 197 (202)
.++|+++++|.++.
T Consensus 128 ~~~~lrik~rf~~~~ 142 (146)
T cd04013 128 ESPSIRIKARYQSTR 142 (146)
T ss_pred CCCEEEEEEEEEEee
Confidence 36999999999864
No 60
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=9.9e-19 Score=125.50 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=81.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEE-EeCC---CCcEEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLS-ITDP---NVPITLTVY 109 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~-v~~~---~~~L~i~V~ 109 (202)
|.+..+.|.|+|++|+||++.+ .+.+||||++.+. ..+++|+++++ .||.|||+|.|+ +... +..|.|+||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 6777889999999999999988 7788999998874 45789999887 999999999998 5432 356999999
Q ss_pred ecCCCCCCCccEEEEEehHhHHH
Q 028875 110 DHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
|++.++++++||++.++|+++..
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNL 112 (124)
T ss_pred ECCCcccCceEEEEEEeccccCC
Confidence 99999899999999999988744
No 61
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.79 E-value=1.1e-18 Score=125.31 Aligned_cols=95 Identities=29% Similarity=0.486 Sum_probs=82.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVY 109 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~ 109 (202)
+....+.|.|+|++|++|+..+ .+.+||||++.+. ..+.+|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 4566789999999999999988 7889999999983 4678999999999999999999975322 245999999
Q ss_pred ecCCCCCCCccEEEEEehHhHHH
Q 028875 110 DHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
|++.++++++||++.++++++..
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccC
Confidence 99999899999999999987764
No 62
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.78 E-value=1.8e-18 Score=125.60 Aligned_cols=95 Identities=28% Similarity=0.341 Sum_probs=83.6
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-------CeEEeceeecCCCCCeEeeeeEEEEeCC-----CCcE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-------KQKLKTRVIKKDVNPEWNEDLTLSITDP-----NVPI 104 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~w~e~f~f~v~~~-----~~~L 104 (202)
+....+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+... ...|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 4556788999999999999988 7899999999986 3478999999999999999999998752 3469
Q ss_pred EEEEEecCCCCCCCccEEEEEehHhHHH
Q 028875 105 TLTVYDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 105 ~i~V~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
.|+|||++.++++++||++.++|+++..
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999999889999999999998874
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.78 E-value=2e-18 Score=123.53 Aligned_cols=96 Identities=26% Similarity=0.421 Sum_probs=83.7
Q ss_pred ccccceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVY 109 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~ 109 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++++. ....+|++++++.||.|||.|.|.+... ...|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 5667789999999999999886 6789999999984 4567899999999999999999998653 346999999
Q ss_pred ecCCCCCCCccEEEEEehHhHHHH
Q 028875 110 DHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
|++..+++++||++.++|+++...
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecC
Confidence 999988899999999999887654
No 64
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.78 E-value=7.3e-19 Score=131.71 Aligned_cols=92 Identities=34% Similarity=0.482 Sum_probs=80.9
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEEe
Q 028875 41 LLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVYD 110 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~d 110 (202)
..|.|.|+|++|++|+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+... +..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 6789999999999999988 7899999999884 3578999999999999999999986422 2469999999
Q ss_pred cCCCCCCCccEEEEEehHhHHH
Q 028875 111 HDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 111 ~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
++.++++++||++.++++++..
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCCCCceEEEEEEeCCcccc
Confidence 9999889999999999987654
No 65
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.78 E-value=1.8e-17 Score=119.14 Aligned_cols=90 Identities=30% Similarity=0.510 Sum_probs=79.2
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCcc
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~l 120 (202)
..|.|+|.+|+ |...+ .+.+||||++++++. .++|++++++.+|.|||+|.|.+.. ...|.|+|||++..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 36899999998 54444 778999999999977 8899999999999999999999863 56799999999999899999
Q ss_pred EEEEEehHhHHHHh
Q 028875 121 GDAEFDIKTYIEAL 134 (202)
Q Consensus 121 G~~~i~l~~l~~~~ 134 (202)
|++.++|+++....
T Consensus 80 G~~~i~l~~l~~~~ 93 (125)
T cd04021 80 GEASLDLSDILKNH 93 (125)
T ss_pred EEEEEEHHHhHhhc
Confidence 99999999998753
No 66
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.78 E-value=1.9e-18 Score=123.56 Aligned_cols=95 Identities=33% Similarity=0.499 Sum_probs=82.6
Q ss_pred ccccceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~ 107 (202)
|....+.|.|+|++|++|+..+ .+.+||||++++. ..+.+|++++++.||.|||+|.|.+... ...|.|+
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 5667889999999999999887 5689999999984 1467999999999999999999998653 3569999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
|||++.++++++||++.++|+++..
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccc
Confidence 9999999899999999999988753
No 67
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.77 E-value=9.4e-19 Score=127.36 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=80.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V 108 (202)
|.+..+.|.|+|++|+||+..+ .+.+||||++++.. .+.+|++++++.||+|||+|.|.+... +..|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 6677889999999999999988 78999999999852 256899999999999999999998653 35599999
Q ss_pred EecCCCCCCCccEEEEEehHh
Q 028875 109 YDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~ 129 (202)
||++.++++++||++.+....
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC
Confidence 999999999999999997653
No 68
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.77 E-value=3.8e-18 Score=126.25 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=79.9
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----------------------------eEEeceeecCCCCC
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-----------------------------QKLKTRVIKKDVNP 87 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~t~~P 87 (202)
..++.+.|.|+|++|++|...+ .|.+||||++.+.. ..++|+++.++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 5678899999999999999999 88999999999862 23789999999999
Q ss_pred eEeeeeEEEEeCC-CCcEEEEEEecCCCCCCCccEEEEEehHhHH
Q 028875 88 EWNEDLTLSITDP-NVPITLTVYDHDLFSKDDRMGDAEFDIKTYI 131 (202)
Q Consensus 88 ~w~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~ 131 (202)
.|||+|.|.+... ...|.|+|||++ +++||++.++++++.
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 9999999999764 356999999997 889999999999887
No 69
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.77 E-value=5.7e-18 Score=120.01 Aligned_cols=107 Identities=22% Similarity=0.434 Sum_probs=83.7
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEEEecCCCCCCCcc
Q 028875 45 LRIRIKRGVNLAVRDVRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 45 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V~d~~~~~~d~~l 120 (202)
|.|+|++|++|+.. +.+||||++++++. .++|+++++ .+|.|||+|.|.+...+ ..|.|.+||.+....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999886 78999999999975 479999999 99999999999997632 4578888998876566667
Q ss_pred EEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc-----eeeEEEEEEE
Q 028875 121 GDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE-----CGELEIQLQW 193 (202)
Q Consensus 121 G~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~i~l~l~~ 193 (202)
|.+.+..... + + ..+.|++|.... .|+|+|+++|
T Consensus 79 g~v~l~~~~~--~-----------------------------------~--~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 79 GKVALSKLDL--G-----------------------------------Q--GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEecCcCC--C-----------------------------------C--cceeEEECccCCCCCCcCceEEEEEEC
Confidence 7655543221 1 1 237899987643 7999999976
No 70
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=9.4e-18 Score=118.66 Aligned_cols=88 Identities=32% Similarity=0.523 Sum_probs=78.5
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC-eEEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCCCCCCCccE
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-QKLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~lG 121 (202)
|+|+|++|++|+..+ .+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+... ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999888 77899999999975 557999999999999999999999764 456999999999988999999
Q ss_pred EEEEehHhHHH
Q 028875 122 DAEFDIKTYIE 132 (202)
Q Consensus 122 ~~~i~l~~l~~ 132 (202)
++.+++.++..
T Consensus 81 ~~~~~l~~l~~ 91 (115)
T cd04040 81 SAYIDLSDLEP 91 (115)
T ss_pred EEEEEHHHcCC
Confidence 99999998765
No 71
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.76 E-value=2e-17 Score=120.35 Aligned_cols=88 Identities=20% Similarity=0.385 Sum_probs=75.5
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-------------eEEeceeecCCCCCeE-eeeeEEEEeCCCCcEEEEE
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-------------QKLKTRVIKKDVNPEW-NEDLTLSITDPNVPITLTV 108 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------~~~~T~~~~~t~~P~w-~e~f~f~v~~~~~~L~i~V 108 (202)
++.|++++|++|+ ++ .|.+||||++++.. ++++|++++++.||.| ||+|.|.+. ....|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4678999999998 56 89999999999852 3689999999999999 999999985 356799999
Q ss_pred EecCCCCC---CCccEEEEEehHhHHHH
Q 028875 109 YDHDLFSK---DDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 109 ~d~~~~~~---d~~lG~~~i~l~~l~~~ 133 (202)
||++..++ +++||++.+++.++...
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhccc
Confidence 99865433 79999999999998765
No 72
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.76 E-value=2.4e-18 Score=125.28 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=80.9
Q ss_pred ccccceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD---VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITL 106 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i 106 (202)
|.+..+.|.|+|++|+||+..+ .+.+||||++++.. .+.+|++++++.||+|||.|.|.+... +..|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 6778899999999999999987 34589999999873 356999999999999999999998753 355999
Q ss_pred EEEecCCCCCCCccEEEEEehHh
Q 028875 107 TVYDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 107 ~V~d~~~~~~d~~lG~~~i~l~~ 129 (202)
+|||++.++++++||++.+.+..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC
Confidence 99999999999999999999864
No 73
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.76 E-value=1.4e-17 Score=123.27 Aligned_cols=89 Identities=26% Similarity=0.394 Sum_probs=72.8
Q ss_pred EEEEEEEeec--CCCCC-CCCCCcEEEEEE----C-CeEEeceeecCCCCCeEeeeeEEEEeCC---------CCcEEEE
Q 028875 45 LRIRIKRGVN--LAVRD-VRSSDPYVVVKM----G-KQKLKTRVIKKDVNPEWNEDLTLSITDP---------NVPITLT 107 (202)
Q Consensus 45 L~v~v~~a~~--L~~~~-~~~~dpyv~v~~----~-~~~~~T~~~~~t~~P~w~e~f~f~v~~~---------~~~L~i~ 107 (202)
..++|..|++ |+..+ .+..||||++++ . .++++|+++++|.||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455566666 66666 678999999997 2 4688999999999999999999999654 2459999
Q ss_pred EEecCCC-CCCCccEEEEEehHhHHHH
Q 028875 108 VYDHDLF-SKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 108 V~d~~~~-~~d~~lG~~~i~l~~l~~~ 133 (202)
|||++.+ .+|++||++.++|+.+...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc
Confidence 9999986 5799999999999987654
No 74
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.76 E-value=5.1e-18 Score=122.83 Aligned_cols=90 Identities=33% Similarity=0.580 Sum_probs=80.7
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC--CCcEEEEEEecCCC
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP--NVPITLTVYDHDLF 114 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~--~~~L~i~V~d~~~~ 114 (202)
+.|.|+|++|++|+..+ .+.+||||.+.+. ...++|+++.++.+|.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 88999999999999887 7789999999986 3678999999999999999999998754 35699999999988
Q ss_pred CCCCccEEEEEehHhHHH
Q 028875 115 SKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 115 ~~d~~lG~~~i~l~~l~~ 132 (202)
+.+++||++.++++++..
T Consensus 93 ~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 93 TRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCcceeEEEEEeHHHhCc
Confidence 899999999999998864
No 75
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.76 E-value=3.5e-19 Score=147.18 Aligned_cols=93 Identities=35% Similarity=0.542 Sum_probs=84.2
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCCC--CcEEEEEEecC
Q 028875 41 LLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDPN--VPITLTVYDHD 112 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~~--~~L~i~V~d~~ 112 (202)
....|+|+|.+|+||.++| +|.+||||++++- ..+++|++++.++||+|||+|+|.+...+ +.|.|+|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 4567999999999999999 9999999999986 35779999999999999999999998654 56999999999
Q ss_pred CCCCCCccEEEEEehHhHHHH
Q 028875 113 LFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l~~l~~~ 133 (202)
..+++||+|...+.+++|...
T Consensus 258 rTsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred ccccccccceecccHHHHhhc
Confidence 999999999999999998764
No 76
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.76 E-value=5.3e-18 Score=122.28 Aligned_cols=93 Identities=17% Similarity=0.303 Sum_probs=80.3
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCC-CCeEeeeeEEEEeCCC--CcEEEE
Q 028875 37 LMETLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDV-NPEWNEDLTLSITDPN--VPITLT 107 (202)
Q Consensus 37 ~~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~-~P~w~e~f~f~v~~~~--~~L~i~ 107 (202)
+|.+..+.|+|+|++|+||++.. .+..||||++++. -.+.+|++++++. +|.|||+|.|.+.... ..|.|+
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 58889999999999999999875 5677999999975 1467999999995 6999999999997643 347899
Q ss_pred EEecCCCCCCCccEEEEEehHh
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~ 129 (202)
|||++..+++++||++.+..+.
T Consensus 88 v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 88 LYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred EEeCCCCcCCceEEEEEECCcc
Confidence 9999999899999999999865
No 77
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.76 E-value=4.5e-18 Score=124.09 Aligned_cols=88 Identities=22% Similarity=0.434 Sum_probs=78.5
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC----CeEEeceeecCCCCCeEeeeeEEEEeCC----------------CCcE
Q 028875 45 LRIRIKRGVNLAVRDVRSSDPYVVVKMG----KQKLKTRVIKKDVNPEWNEDLTLSITDP----------------NVPI 104 (202)
Q Consensus 45 L~v~v~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~w~e~f~f~v~~~----------------~~~L 104 (202)
|.|+|++|++|+.+..+.+||||+++++ ..+++|+++.++.+|.|||+|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5789999999987766789999999998 6789999999999999999999998764 2459
Q ss_pred EEEEEecCCCCCCCccEEEEEehHhHHH
Q 028875 105 TLTVYDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 105 ~i~V~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
.|+|||++..+.+++||++.+++.++..
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~ 108 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQ 108 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccC
Confidence 9999999998899999999999988764
No 78
>PLN03008 Phospholipase D delta
Probab=99.76 E-value=1e-17 Score=149.18 Aligned_cols=121 Identities=25% Similarity=0.398 Sum_probs=101.9
Q ss_pred cceEEEEEEEEeecCCCCC-------------------------------------------CCCCCcEEEEEECCe-EE
Q 028875 41 LLGLLRIRIKRGVNLAVRD-------------------------------------------VRSSDPYVVVKMGKQ-KL 76 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~-~~ 76 (202)
..|.|.++|.+|++|+.++ .+.+||||+|.+++. ..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 5689999999999887521 135699999999865 55
Q ss_pred eceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCC
Q 028875 77 KTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHN 156 (202)
Q Consensus 77 ~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (202)
+|++++++.||+|||+|.|.+.++...|.|+|||++.++ +++||++.|+++++..+.
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge---------------------- 148 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGE---------------------- 148 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCC----------------------
Confidence 999999999999999999999988888999999999995 689999999999876642
Q ss_pred ccCCCceeEeeCCcEEEEEEEEecccc------eeeEEEEEEEEeCCCC
Q 028875 157 CLSEQSCVVWKEGKVVQDLVLRLRNVE------CGELEIQLQWIDLPGS 199 (202)
Q Consensus 157 ~~~~~~~~~~~~g~~~~~~~~~l~~~~------~G~i~l~l~~~~~~~~ 199 (202)
..+.|++|.+.. .++|+|+|+|+++...
T Consensus 149 ---------------~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 149 ---------------RISGWFPVLGASGKPPKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred ---------------ceEEEEEccccCCCCCCCCcEEEEEEEEEEcccc
Confidence 247898887643 5799999999999754
No 79
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.76 E-value=4.8e-18 Score=162.97 Aligned_cols=121 Identities=25% Similarity=0.483 Sum_probs=106.0
Q ss_pred cccccccceEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCC--CcEEEEEEec
Q 028875 35 TSLMETLLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPN--VPITLTVYDH 111 (202)
Q Consensus 35 ~~~~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~--~~L~i~V~d~ 111 (202)
-.++++..|.|.|+|++|+||. .+.+.+||||++.++++ +.+|++++++.||.|||.|+|.+.++. ..|+|+|||+
T Consensus 1972 ~~~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1972 ESLLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HHHHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 3457888999999999999998 55889999999999965 789999999999999999998888765 6699999999
Q ss_pred CCCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecc--cceee---
Q 028875 112 DLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRN--VECGE--- 186 (202)
Q Consensus 112 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~--- 186 (202)
|.+ .++.+|.+.|++.++..++ ....||+|.+ .+.|+
T Consensus 2051 d~f-~kd~~G~~~i~l~~vv~~~-------------------------------------~~~~~~~L~~~~~k~G~~~~ 2092 (2102)
T PLN03200 2051 NTF-GKSSLGKVTIQIDRVVMEG-------------------------------------TYSGEYSLNPESNKDGSSRT 2092 (2102)
T ss_pred Ccc-CCCCCceEEEEHHHHhcCc-------------------------------------eeeeeeecCcccccCCCcce
Confidence 999 5559999999999988654 3488999997 56899
Q ss_pred EEEEEEEE
Q 028875 187 LEIQLQWI 194 (202)
Q Consensus 187 i~l~l~~~ 194 (202)
|++.++|-
T Consensus 2093 ~~~e~~w~ 2100 (2102)
T PLN03200 2093 LEIEFQWS 2100 (2102)
T ss_pred EEEEEEec
Confidence 99999995
No 80
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=1.2e-17 Score=119.77 Aligned_cols=88 Identities=32% Similarity=0.557 Sum_probs=78.4
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCeE--EeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCc
Q 028875 44 LLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQK--LKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~ 119 (202)
+|+|+|++|++|+..+ .+.+||||++++++.. .+|++++++.||.|||+|.|.+..+. ..|.|+|||++.++.|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 4789999999999988 7899999999998754 57888899999999999999986554 559999999999999999
Q ss_pred cEEEEEehHhHH
Q 028875 120 MGDAEFDIKTYI 131 (202)
Q Consensus 120 lG~~~i~l~~l~ 131 (202)
||++.+++++..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998765
No 81
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.75 E-value=6e-18 Score=122.78 Aligned_cols=92 Identities=36% Similarity=0.496 Sum_probs=81.8
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V 108 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++.+. ..+++|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 6677899999999999999988 7889999999985 2467999999999999999999998753 34699999
Q ss_pred EecCCCCCCCccEEEEEehHh
Q 028875 109 YDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~ 129 (202)
||++..+++++||++.+++..
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC
Confidence 999998899999999999974
No 82
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.75 E-value=6.4e-18 Score=123.15 Aligned_cols=92 Identities=27% Similarity=0.412 Sum_probs=80.4
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG--K---QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V 108 (202)
+.+..+.|.|+|++|++|+..+ .+.+||||++.+. + .+++|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 4556789999999999999988 8899999999985 2 357899999999999999999998642 34589999
Q ss_pred EecCCCCCCCccEEEEEehHh
Q 028875 109 YDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~ 129 (202)
||++.++++++||++.+++..
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EECCCCCCCccEEEEEECCcC
Confidence 999999999999999999987
No 83
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.74 E-value=8.7e-18 Score=122.42 Aligned_cols=93 Identities=29% Similarity=0.404 Sum_probs=81.4
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---eEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG--K---QKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V 108 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++.+. + .+++|++++++.||.|||+|.|.+...+ ..|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 6778899999999999999988 7889999999985 2 3578999999999999999999986432 3689999
Q ss_pred EecCCCCCCCccEEEEEehHhH
Q 028875 109 YDHDLFSKDDRMGDAEFDIKTY 130 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~l 130 (202)
||++.++++++||++.+++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC
Confidence 9999999999999999999653
No 84
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=9.4e-18 Score=122.51 Aligned_cols=93 Identities=19% Similarity=0.380 Sum_probs=81.8
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---C---eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG---K---QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~---~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~ 107 (202)
|++..++|.|+|++|+||+..+ .+.+||||++.+. + .+++|++++++.||+|||+|.|.+... +..|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 6778899999999999999988 7789999999985 1 256999999999999999999999743 3469999
Q ss_pred EEecCCCCCCCccEEEEEehHhH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTY 130 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l 130 (202)
|||.+.++++++||++.+++...
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCC
Confidence 99999999999999999998744
No 85
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.73 E-value=1.4e-16 Score=114.59 Aligned_cols=89 Identities=34% Similarity=0.531 Sum_probs=77.3
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEEC------CeEEeceeecCCC-CCeEeeeeEEEEeCCC-CcEEEEEEec
Q 028875 43 GLLRIRIKRGVNLAVRD---VRSSDPYVVVKMG------KQKLKTRVIKKDV-NPEWNEDLTLSITDPN-VPITLTVYDH 111 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~------~~~~~T~~~~~t~-~P~w~e~f~f~v~~~~-~~L~i~V~d~ 111 (202)
-.|+|+|++|++|+..+ .+..||||++++. ..+++|+++.++. ||.|||+|.|.+..++ ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999876 5788999999983 4568999988875 9999999999998655 4489999999
Q ss_pred CCCCCCCccEEEEEehHhHHH
Q 028875 112 DLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 112 ~~~~~d~~lG~~~i~l~~l~~ 132 (202)
+.. ++++||++.++++++..
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ 101 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC
Confidence 988 99999999999998854
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=3.1e-17 Score=119.51 Aligned_cols=93 Identities=29% Similarity=0.418 Sum_probs=81.2
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG--K---QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V 108 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++.+. + .+++|++++++.||.|||+|.|.+... +..|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 6677899999999999999888 7899999999983 2 357899999999999999999998632 34699999
Q ss_pred EecCCCCCCCccEEEEEehHhH
Q 028875 109 YDHDLFSKDDRMGDAEFDIKTY 130 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~l 130 (202)
||++.++++++||++.+++...
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9999998999999999999764
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.73 E-value=2.3e-17 Score=120.13 Aligned_cols=91 Identities=25% Similarity=0.440 Sum_probs=78.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---eEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG--K---QKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V 108 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++.+. . .+++|++++++.||.|||+|.|.+...+ ..|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 5667799999999999999988 7899999999973 2 3579999999999999999999985432 3599999
Q ss_pred EecCCCCCCCccEEEEEehH
Q 028875 109 YDHDLFSKDDRMGDAEFDIK 128 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~ 128 (202)
||++..+++++||++.+...
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCc
Confidence 99999999999999987653
No 88
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.72 E-value=2.8e-16 Score=110.53 Aligned_cols=80 Identities=21% Similarity=0.501 Sum_probs=69.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEec-------C
Q 028875 45 LRIRIKRGVNLAVRDVRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDH-------D 112 (202)
Q Consensus 45 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~-------~ 112 (202)
|.|+|.+|++|+ +.+||||++.++. .+++|++++++.||+|||+|.|.+.. ...|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 579999999996 4689999999862 46899999999999999999999963 66799999998 4
Q ss_pred CCCCCCccEEEEEehHh
Q 028875 113 LFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l~~ 129 (202)
..+.|+++|.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 56789999998888864
No 89
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.71 E-value=4.5e-17 Score=118.34 Aligned_cols=91 Identities=31% Similarity=0.429 Sum_probs=79.7
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---eEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG--K---QKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V 108 (202)
+.+..+.|+|+|++|++|+..+ .+.+||||++++. + .+++|++++++.||.|||+|.|.+.... ..|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 5677899999999999999998 7899999999984 2 3578999999999999999999985432 3489999
Q ss_pred EecCCCCCCCccEEEEEehH
Q 028875 109 YDHDLFSKDDRMGDAEFDIK 128 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~ 128 (202)
||++.++++++||++.+++.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EECCCCCCCceeEEEEECCC
Confidence 99999999999999999876
No 90
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.70 E-value=5.2e-17 Score=117.72 Aligned_cols=92 Identities=27% Similarity=0.410 Sum_probs=81.4
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V 108 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++++.. .+++|+++.++.+|.|||+|.|.+... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 4556789999999999999988 78899999999863 256999999999999999999998764 35699999
Q ss_pred EecCCCCCCCccEEEEEehHh
Q 028875 109 YDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~ 129 (202)
||++..+++++||.+.+++++
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EecCCCCCCceeEEEEECCCC
Confidence 999998899999999999987
No 91
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.70 E-value=1.7e-16 Score=113.19 Aligned_cols=85 Identities=29% Similarity=0.421 Sum_probs=74.4
Q ss_pred EEEeecCCCCC-CCCCCcEEEEEECCe-------EEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCC----CC
Q 028875 49 IKRGVNLAVRD-VRSSDPYVVVKMGKQ-------KLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDL----FS 115 (202)
Q Consensus 49 v~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~----~~ 115 (202)
.++|++|+..+ .+.+||||++++... .++|++++++.||.|||+|.|.+... ...|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 47899999988 889999999999754 48999999999999999999986533 3569999999997 78
Q ss_pred CCCccEEEEEehHhHHHH
Q 028875 116 KDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~ 133 (202)
.+++||++.++++++...
T Consensus 86 ~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 86 DHDFLGEAECTLGEIVSS 103 (120)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999864
No 92
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.1e-16 Score=136.28 Aligned_cols=96 Identities=34% Similarity=0.514 Sum_probs=84.9
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CeEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEe
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG---KQKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYD 110 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d 110 (202)
|......|.|+|++|++|+..+ .+.+||||++++. +.+.+|++.++++||.|||+|.|.+... ...|.++|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 5667788999999999999999 6789999999998 3678999999999999999999997653 3669999999
Q ss_pred cCCCCCCCccEEEEEehHhHHHH
Q 028875 111 HDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 111 ~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
.|.++++++||++.++|..+...
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~ 264 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLL 264 (421)
T ss_pred cCCcccccEEEEEEecCcccccc
Confidence 99999999999999998766543
No 93
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.69 E-value=1.1e-16 Score=116.78 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=79.2
Q ss_pred ccccceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVY 109 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~ 109 (202)
|.+..+.|.|+|++|+||+..+.+.+||||++.+.. .+++|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 566788999999999999988777799999999762 366999999999999999999998642 246999999
Q ss_pred ecCCCCCCCccEEEEEehH
Q 028875 110 DHDLFSKDDRMGDAEFDIK 128 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l~ 128 (202)
|.+..+++++||++.+...
T Consensus 90 ~~~~~~~~~~lG~v~ig~~ 108 (137)
T cd08409 90 QSGGVRKSKLLGRVVLGPF 108 (137)
T ss_pred eCCCCCCcceEEEEEECCc
Confidence 9999889999999999864
No 94
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.5e-16 Score=113.95 Aligned_cols=95 Identities=31% Similarity=0.418 Sum_probs=81.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~ 107 (202)
|.+..+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.||.|||+|.|..... ...+.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 5666789999999999999888 6789999999984 2468999999999999999999964332 3469999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHH
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
|||++.+ .+++||++.++++++..+
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 9999988 899999999999988754
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.65 E-value=1.2e-15 Score=107.04 Aligned_cols=85 Identities=28% Similarity=0.502 Sum_probs=72.4
Q ss_pred EEEEeecCCCCC-CCCCCcEEEEEECC------eEEeceeecCCCCCeEeeeeEEEEeC-----CCCcEEEEEEecCCCC
Q 028875 48 RIKRGVNLAVRD-VRSSDPYVVVKMGK------QKLKTRVIKKDVNPEWNEDLTLSITD-----PNVPITLTVYDHDLFS 115 (202)
Q Consensus 48 ~v~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~f~f~v~~-----~~~~L~i~V~d~~~~~ 115 (202)
-.++|++|+..+ .+.+||||++++.. ..++|++++++.||.|| +|.|.+.. ....|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 346899999998 78999999999753 25899999999999999 68887542 1456999999999999
Q ss_pred CCCccEEEEEehHhHHHH
Q 028875 116 KDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~ 133 (202)
+|++||++.++++++...
T Consensus 84 ~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 84 KHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999843
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.62 E-value=2.5e-15 Score=99.73 Aligned_cols=80 Identities=36% Similarity=0.694 Sum_probs=71.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC---eEEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCCCCCCc
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGK---QKLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~~~d~~ 119 (202)
|+|+|.+|++|...+ .+..+|||++.+.. ..++|+++.++.+|.|+|+|.|.+.... ..|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999977 77999999999986 6799999999999999999999976554 449999999999988999
Q ss_pred cEEEE
Q 028875 120 MGDAE 124 (202)
Q Consensus 120 lG~~~ 124 (202)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 97
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.62 E-value=1.8e-15 Score=131.15 Aligned_cols=122 Identities=23% Similarity=0.378 Sum_probs=107.2
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCcc
Q 028875 43 GLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRM 120 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~l 120 (202)
..|.|+|.+|+||++.+ .|..||||.|.+++ ..+||.++.+++.|.|.|+|.|.+...-..|.|.|||+| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 45889999999999999 89999999999996 467999999999999999999999887788999999999 8899999
Q ss_pred EEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc-----eeeEEEEEEEEe
Q 028875 121 GDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE-----CGELEIQLQWID 195 (202)
Q Consensus 121 G~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~i~l~l~~~~ 195 (202)
|.+.|.-++|.... |+ +.||.|..+. .|+|||++++.+
T Consensus 84 GKvai~re~l~~~~----------------------------------~~---d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP----------------------------------GK---DTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ceeeeeHHHHhhCC----------------------------------CC---ccceeccccCCChhhceeEEEEEEecc
Confidence 99999988887643 22 7799988765 799999999988
Q ss_pred CCCCCCC
Q 028875 196 LPGSKGL 202 (202)
Q Consensus 196 ~~~~~~~ 202 (202)
.-.++|+
T Consensus 127 ~~~~~~~ 133 (800)
T KOG2059|consen 127 AIQSSGL 133 (800)
T ss_pred ccCCCcc
Confidence 7666553
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.4e-16 Score=132.08 Aligned_cols=93 Identities=28% Similarity=0.517 Sum_probs=84.1
Q ss_pred cccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCC---
Q 028875 39 ETLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLF--- 114 (202)
Q Consensus 39 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~--- 114 (202)
+.....++++|+.|++|..+| .|.+||||.+.+++.+.+|+++...+||+|||.|+|.+++....+.+.|||.|.-
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 446788999999999999999 9999999999999999999999999999999999999999888999999998752
Q ss_pred --------CCCCccEEEEEehHhHH
Q 028875 115 --------SKDDRMGDAEFDIKTYI 131 (202)
Q Consensus 115 --------~~d~~lG~~~i~l~~l~ 131 (202)
..|||+|+..|.+..+.
T Consensus 371 klrqkl~resddflgqtvievrtls 395 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLS 395 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecc
Confidence 37899999999886553
No 99
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=124.92 Aligned_cols=122 Identities=25% Similarity=0.418 Sum_probs=106.2
Q ss_pred CCCCCCeeeCCCCcccCCCCCCCCccccccccceEEEEEEEEeecCCCCC---CCCCCcEEEEEECCe-EEeceeecCCC
Q 028875 10 GDHNNPLMVDSPKQTAMGTGDGVRRTSLMETLLGLLRIRIKRGVNLAVRD---VRSSDPYVVVKMGKQ-KLKTRVIKKDV 85 (202)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~-~~~T~~~~~t~ 85 (202)
+.+..||+..|.+...++.++.+.. .....|+|.|+|.+|++|...+ .+..|||+.+.+... .-+|++.+++.
T Consensus 406 ~~~l~pml~~Pnsl~idi~~~m~~~---s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~ 482 (1227)
T COG5038 406 NSTLGPMLLPPNSLTIDISQIMAGD---SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTL 482 (1227)
T ss_pred HhhcCCeeeCCceEEEcHHHhhccc---cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccC
Confidence 4556788899999999888765532 4458999999999999999888 789999999997643 44999999999
Q ss_pred CCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhHHHHh
Q 028875 86 NPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 86 ~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 134 (202)
||+|||+|.+.+..-.+.|.++|||.+....|+.+|.+.++|..+.+..
T Consensus 483 nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 483 NPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred CccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhcc
Confidence 9999999999998878899999999988889999999999999888754
No 100
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.49 E-value=3.7e-13 Score=91.43 Aligned_cols=90 Identities=33% Similarity=0.611 Sum_probs=79.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCe---EEeceeecCCCCCeEeeeeEEEEeCC-CCcEEEEEEecCCCCCCCc
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQ---KLKTRVIKKDVNPEWNEDLTLSITDP-NVPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~w~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~ 119 (202)
+.|.|++|++|.... .+..+|||++.+... .++|+++.++.+|.|||+|.|.+... ...|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 678999999998877 467899999999864 78999999999999999999999877 6679999999998877999
Q ss_pred cEEEEEehHhHHHHh
Q 028875 120 MGDAEFDIKTYIEAL 134 (202)
Q Consensus 120 lG~~~i~l~~l~~~~ 134 (202)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999998876543
No 101
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=8.7e-13 Score=95.12 Aligned_cols=89 Identities=27% Similarity=0.340 Sum_probs=75.4
Q ss_pred EEEEEEEeecCCCCC---CC--CCCcEEEEEECC---eEEeceeecCCCC--CeEeeeeEEEEeCC--------------
Q 028875 45 LRIRIKRGVNLAVRD---VR--SSDPYVVVKMGK---QKLKTRVIKKDVN--PEWNEDLTLSITDP-------------- 100 (202)
Q Consensus 45 L~v~v~~a~~L~~~~---~~--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~w~e~f~f~v~~~-------------- 100 (202)
|+|.|.+|++++..+ .| .+||||++.+.. .+++|.++.+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999966543 45 499999999874 5789999999999 99999999987641
Q ss_pred ----------CCcEEEEEEecCCCCCCCccEEEEEehHhHHHH
Q 028875 101 ----------NVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 101 ----------~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
...|.++|||.|.++.|++||.+.++|..+..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 144899999999999999999999999977654
No 102
>PLN02270 phospholipase D alpha
Probab=99.45 E-value=1.1e-12 Score=117.22 Aligned_cols=121 Identities=20% Similarity=0.322 Sum_probs=101.2
Q ss_pred cceEEEEEEEEeecCCCCC-------------------CCCCCcEEEEEECCeE-EeceeecCC-CCCeEeeeeEEEEeC
Q 028875 41 LLGLLRIRIKRGVNLAVRD-------------------VRSSDPYVVVKMGKQK-LKTRVIKKD-VNPEWNEDLTLSITD 99 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-------------------~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~w~e~f~f~v~~ 99 (202)
..|.|.|+|.+|++|+..+ .+.+|||+.+.+++.+ .||+++.+. .||+|+|+|.+++..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 5699999999999998521 2467999999999765 599999885 699999999999999
Q ss_pred CCCcEEEEEEecCCCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEe
Q 028875 100 PNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRL 179 (202)
Q Consensus 100 ~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 179 (202)
....+.|+|.|.+.+ ...+||.+.++..++..+. ..+.||++
T Consensus 86 ~~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~-------------------------------------~i~~~~~~ 127 (808)
T PLN02270 86 MASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGE-------------------------------------EVDRWVEI 127 (808)
T ss_pred CcceEEEEEecCCcc-CceEEEEEEEEHHHhcCCC-------------------------------------ccccEEec
Confidence 889999999999999 5569999999999887643 13778888
Q ss_pred cccc------eeeEEEEEEEEeCCCC
Q 028875 180 RNVE------CGELEIQLQWIDLPGS 199 (202)
Q Consensus 180 ~~~~------~G~i~l~l~~~~~~~~ 199 (202)
-+.. .-.||++|+|+++...
T Consensus 128 ~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 128 LDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 7654 3499999999998753
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.45 E-value=1.7e-12 Score=87.77 Aligned_cols=87 Identities=40% Similarity=0.730 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC-eEEeceeecCCCCCeEeeeeEEEEeC-CCCcEEEEEEecCCCCCCCccE
Q 028875 45 LRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-QKLKTRVIKKDVNPEWNEDLTLSITD-PNVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 45 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~lG 121 (202)
|.|.|++|+++.... ....+|||.+.+.. ..++|++..++.+|.|++.|.|.+.. ....+.|+||+.+....+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468899999998755 66899999999997 88999999999999999999999987 4566999999999887789999
Q ss_pred EEEEehHhHH
Q 028875 122 DAEFDIKTYI 131 (202)
Q Consensus 122 ~~~i~l~~l~ 131 (202)
++.+++.++.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999987
No 104
>PLN02223 phosphoinositide phospholipase C
Probab=99.44 E-value=1.8e-12 Score=111.61 Aligned_cols=94 Identities=26% Similarity=0.530 Sum_probs=78.8
Q ss_pred ceEEEEEEEEeecCCCC-----C-CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCCCCc-EEEEEE
Q 028875 42 LGLLRIRIKRGVNLAVR-----D-VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDPNVP-ITLTVY 109 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~-----~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~-L~i~V~ 109 (202)
...|.|+|+.|++++.. + ....||||+|.+.+ ..++|.+..++.||.|||+|.|.+..++.. |.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987521 2 34689999999863 356787777789999999999999988866 899999
Q ss_pred ecCCCCCCCccEEEEEehHhHHHHhc
Q 028875 110 DHDLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
|+|....++|+|+..+++..+..+.+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR 513 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIR 513 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCce
Confidence 99998889999999999999988753
No 105
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=7.6e-13 Score=112.88 Aligned_cols=93 Identities=32% Similarity=0.453 Sum_probs=81.7
Q ss_pred cccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEE
Q 028875 37 LMETLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLT 107 (202)
Q Consensus 37 ~~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~ 107 (202)
+|.+..|.|+|.|++|++|...+ .+..||||++.+- ..+.+|.+.+++.||+|||+|.|.+.... ..|.|+
T Consensus 292 ~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 292 CYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred EeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 38888999999999999999999 7889999999975 24678999999999999999999886432 458999
Q ss_pred EEecCCCCCCCccEEEEEehHh
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~ 129 (202)
|||++.++.+++||++.+....
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999999999999998888764
No 106
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.34 E-value=5.2e-12 Score=108.23 Aligned_cols=113 Identities=29% Similarity=0.514 Sum_probs=92.3
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECCeEEeceeecCCCCCeEe-eeeEEEEeCCC---CcEEEEEEecCCCC
Q 028875 42 LGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWN-EDLTLSITDPN---VPITLTVYDHDLFS 115 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~-e~f~f~v~~~~---~~L~i~V~d~~~~~ 115 (202)
.|.|.|+|..|++|+.+| ....|.||.+++++..++|.+..+++||.|| ++|.|++.+.+ ++|.|+++|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 478999999999999998 5678999999999999999999999999998 88999998753 67999999999999
Q ss_pred CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCC
Q 028875 116 KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRH 155 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 155 (202)
.+|-||.+.|+++.+.-....+ .-..+|+++..|.|...
T Consensus 82 andaigkv~i~idpl~~e~aaq-avhgkgtvisgw~pifd 120 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQ-AVHGKGTVISGWFPIFD 120 (1169)
T ss_pred cccccceeeeccChHHHHhHHh-hhcCCceEEeeeeecce
Confidence 9999999999999876543210 11234555555555443
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=99.34 E-value=1.6e-11 Score=107.76 Aligned_cols=93 Identities=22% Similarity=0.381 Sum_probs=78.5
Q ss_pred ceEEEEEEEEeecCCCCC-------CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCCCCc-EEEEE
Q 028875 42 LGLLRIRIKRGVNLAVRD-------VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDPNVP-ITLTV 108 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~-------~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~-L~i~V 108 (202)
...|.|+|+.|++++... ....||||++.+.+ .+.+|+++.++.||.|||+|.|.+..++.. +.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 568999999998875321 23469999999763 567999999999999999999999887755 78999
Q ss_pred EecCCCCCCCccEEEEEehHhHHHHh
Q 028875 109 YDHDLFSKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 134 (202)
||+|..+.++|+|++.+++..|..+.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy 574 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI 574 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc
Confidence 99999888999999999999998864
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.33 E-value=2.8e-12 Score=116.88 Aligned_cols=99 Identities=33% Similarity=0.507 Sum_probs=88.7
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCC-cEEEEEEecCCCCCC
Q 028875 41 LLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNV-PITLTVYDHDLFSKD 117 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~-~L~i~V~d~~~~~~d 117 (202)
..|.|+|.+..|.||+..+ +|.+||||++.+.++ .++|+++++++||+|||+|.+++..... .+.+.|+||+.-.++
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCc
Confidence 4789999999999999999 888999999999965 7899999999999999999999986554 489999999999999
Q ss_pred CccEEEEEehHhHHHHhcCCcc
Q 028875 118 DRMGDAEFDIKTYIEALKMNLD 139 (202)
Q Consensus 118 ~~lG~~~i~l~~l~~~~~~~~~ 139 (202)
+.||.+.++|..+..+...+..
T Consensus 1118 d~lg~~~idL~~l~~~~~~n~~ 1139 (1227)
T COG5038 1118 DLLGTAEIDLSKLEPGGTTNSN 1139 (1227)
T ss_pred cccccccccHhhcCcCCcccee
Confidence 9999999999999887655443
No 109
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.33 E-value=1.7e-11 Score=83.86 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=73.0
Q ss_pred EEEEEEEeecCCCCC----CCCCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCc
Q 028875 45 LRIRIKRGVNLAVRD----VRSSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDR 119 (202)
Q Consensus 45 L~v~v~~a~~L~~~~----~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~ 119 (202)
|.|+|..++++...+ .+.++|||.++++.. +.||++. .||.|||+|.|++ +....+.+.|||+..- ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V-dk~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV-EKNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe-cCCcEEEEEEEeCCCC-eecc
Confidence 578999999998876 467899999999975 8899874 6999999999999 4577899999998654 5567
Q ss_pred cEEEEEehHhHHHHhc
Q 028875 120 MGDAEFDIKTYIEALK 135 (202)
Q Consensus 120 lG~~~i~l~~l~~~~~ 135 (202)
||...+.+++|.+..+
T Consensus 76 i~llW~~~sdi~Ee~R 91 (109)
T cd08689 76 VGLLWLRLSDIAEEIR 91 (109)
T ss_pred eeeehhhHHHHHHHHH
Confidence 9999999999987654
No 110
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.32 E-value=1.8e-11 Score=107.27 Aligned_cols=95 Identities=20% Similarity=0.366 Sum_probs=79.7
Q ss_pred cceEEEEEEEEeecCCCC------C-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCCCCc-EEEE
Q 028875 41 LLGLLRIRIKRGVNLAVR------D-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDPNVP-ITLT 107 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~------~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~-L~i~ 107 (202)
...+|.|+|+.|.+++.. + ....||||+|.+. ..+.+|++..++.||.|||+|.|.+..++.. |.|+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 346899999999986421 1 2357999999985 2456888888899999999999999988865 8999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHHhc
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
|+|++....++|+|+..+++..|..+.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccc
Confidence 9999998899999999999999998764
No 111
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.30 E-value=4e-11 Score=104.93 Aligned_cols=94 Identities=22% Similarity=0.345 Sum_probs=79.0
Q ss_pred ceEEEEEEEEeecCC----CCC---CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCCCCc-EEEEE
Q 028875 42 LGLLRIRIKRGVNLA----VRD---VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDPNVP-ITLTV 108 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~----~~~---~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~-L~i~V 108 (202)
...|.|+|+.|.+++ ... ....||||+|.+. ..+.+|+++.++.||.|||+|.|.+..++-. |.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 111 2467999999986 3467999999999999999999999888755 79999
Q ss_pred EecCCCCCCCccEEEEEehHhHHHHhc
Q 028875 109 YDHDLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
+|+|..+.++|+|+..+++..|..+.+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998764
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.29 E-value=2.5e-11 Score=106.89 Aligned_cols=92 Identities=27% Similarity=0.462 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCCCC-----CCCCCcEEEEEECC-----eEEece-eecCCCCCeEeeeeEEEEeCCCCc-EEEEEEec
Q 028875 44 LLRIRIKRGVNLAVRD-----VRSSDPYVVVKMGK-----QKLKTR-VIKKDVNPEWNEDLTLSITDPNVP-ITLTVYDH 111 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~-----~~~~dpyv~v~~~~-----~~~~T~-~~~~t~~P~w~e~f~f~v~~~~~~-L~i~V~d~ 111 (202)
+|.|+|+.|+++.... ....||||.|++.+ ...+|+ +..++.||.|+|+|.|++..++.. |.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999666543 14689999999864 467899 455569999999999999999977 79999999
Q ss_pred CCCCCCCccEEEEEehHhHHHHhc
Q 028875 112 DLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 112 ~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
+..++|+|+|+..+|+..|.++.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR 720 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR 720 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee
Confidence 999999999999999999998764
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.24 E-value=5e-11 Score=105.31 Aligned_cols=93 Identities=25% Similarity=0.455 Sum_probs=79.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CeEE-eceeecCCCCCeEe-eeeEEEEeCCCCc-EEEEEEecCC
Q 028875 42 LGLLRIRIKRGVNLAVRDVRSSDPYVVVKMG-----KQKL-KTRVIKKDVNPEWN-EDLTLSITDPNVP-ITLTVYDHDL 113 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~-~T~~~~~t~~P~w~-e~f~f~v~~~~~~-L~i~V~d~~~ 113 (202)
.-.|.|.|+.|++|+....+...|||.|.+. ..++ +|.++.+++||+|| |.|+|.+.+++-. |.|.|+|.|.
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 4678999999999997667777899999975 2344 55566667999999 9999999999866 8999999999
Q ss_pred CCCCCccEEEEEehHhHHHHh
Q 028875 114 FSKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 114 ~~~d~~lG~~~i~l~~l~~~~ 134 (202)
++...|||++..|+..+..+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcceeeeeecchhhhhccc
Confidence 998889999999999988764
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=99.23 E-value=1.5e-10 Score=101.09 Aligned_cols=94 Identities=16% Similarity=0.303 Sum_probs=78.5
Q ss_pred ceEEEEEEEEeecCCC---CC----CCCCCcEEEEEEC-----CeEEeceeecCCCCCeE-eeeeEEEEeCCCCc-EEEE
Q 028875 42 LGLLRIRIKRGVNLAV---RD----VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEW-NEDLTLSITDPNVP-ITLT 107 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~---~~----~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w-~e~f~f~v~~~~~~-L~i~ 107 (202)
...|+|+|++|++|+. .+ ....||||++.+. ..+++|+++.++.||.| +|+|.|.+..++-. |.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 11 2347999999976 34679999988899999 99999999988755 7999
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHHhc
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
|+|++..+.++|+|+..++++.|..+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 9999988899999999999999988754
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.18 E-value=2.2e-12 Score=112.63 Aligned_cols=120 Identities=27% Similarity=0.413 Sum_probs=94.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-------------e------------------EEeceeecCCC
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-------------Q------------------KLKTRVIKKDV 85 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------~------------------~~~T~~~~~t~ 85 (202)
..++...+.|.+.+|++|.+++ +|.+|||++..+.. + .+-|.+.++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 4456667788889999999999 99999999987640 0 13477888999
Q ss_pred CCeEeeeeEEEEeCCC-CcEEEEEEecCCC---------------------------------C---CCCccEEEEEehH
Q 028875 86 NPEWNEDLTLSITDPN-VPITLTVYDHDLF---------------------------------S---KDDRMGDAEFDIK 128 (202)
Q Consensus 86 ~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~---------------------------------~---~d~~lG~~~i~l~ 128 (202)
||+|+|.|.|.|.+-+ ..+++.|||+|.- + .|||+|++.|+|.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 9999999999998866 4499999998731 2 4889999999998
Q ss_pred hHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc-----eeeEEEEEEEEeC
Q 028875 129 TYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE-----CGELEIQLQWIDL 196 (202)
Q Consensus 129 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~i~l~l~~~~~ 196 (202)
++...+ -|.||.|+..+ +|.++|+| |++.
T Consensus 269 EiP~~G--------------------------------------ld~WFkLepRS~~S~VqG~~~Lkl-wLsT 302 (1103)
T KOG1328|consen 269 EIPPDG--------------------------------------LDQWFKLEPRSDKSKVQGQVKLKL-WLST 302 (1103)
T ss_pred cCCcch--------------------------------------HHHHhccCcccccccccceEEEEE-EEee
Confidence 776542 17899988654 79999999 5554
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.08 E-value=2.8e-11 Score=105.83 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=82.5
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-------eEEeceeecCCCCCeEeeeeEEEEeCCC-----CcE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-------QKLKTRVIKKDVNPEWNEDLTLSITDPN-----VPI 104 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-------~~~~T~~~~~t~~P~w~e~f~f~v~~~~-----~~L 104 (202)
+......|.|.|+.|+++.+.| +|.+||||+|.+.. ...+|+++.+|+||+|+|+|.|.+.... ..+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 4555667889999999999999 99999999999983 3579999999999999999999997532 348
Q ss_pred EEEEEecCCCCCCCccEEEEEehHhHHH
Q 028875 105 TLTVYDHDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 105 ~i~V~d~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
.|+|+|+|-++.+||-|++.+.|+++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999987654
No 117
>PLN02352 phospholipase D epsilon
Probab=99.03 E-value=3.8e-09 Score=94.64 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=89.7
Q ss_pred cceEEEEEEEEeecCCCC----C--CCCCCcEEEEEECCeEE-eceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecC
Q 028875 41 LLGLLRIRIKRGVNLAVR----D--VRSSDPYVVVKMGKQKL-KTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHD 112 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~----~--~~~~dpyv~v~~~~~~~-~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~ 112 (202)
..|+|.++|.+|+.+... . ....+||+.+.+++.+. || .+..||+|+|+|.+++.... ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 579999999999843322 1 11239999999997554 88 45579999999999999877 679999988
Q ss_pred CCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEecccc----ee-eE
Q 028875 113 LFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNVE----CG-EL 187 (202)
Q Consensus 113 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G-~i 187 (202)
..++||.+.++..++..+. ...+.||++-+.. .| .|
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~------------------------------------~~~~~~~~~~~~~~~p~~~~~~ 123 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEA------------------------------------SFINGFFPLIMENGKPNPELKL 123 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCC------------------------------------cccceEEEcccCCCCCCCCCEE
Confidence 3678999999999987642 1247888887644 34 99
Q ss_pred EEEEEEEeCCCC
Q 028875 188 EIQLQWIDLPGS 199 (202)
Q Consensus 188 ~l~l~~~~~~~~ 199 (202)
+++++|+++...
T Consensus 124 ~~~~~~~~~~~~ 135 (758)
T PLN02352 124 RFMLWFRPAELE 135 (758)
T ss_pred EEEEEEEEhhhC
Confidence 999999999764
No 118
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.70 E-value=1.4e-08 Score=91.89 Aligned_cols=91 Identities=27% Similarity=0.530 Sum_probs=81.4
Q ss_pred cccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeE--EeceeecCCCCCeEeeeeEEEEeCCCC-cEEEEEEecCCC
Q 028875 39 ETLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQK--LKTRVIKKDVNPEWNEDLTLSITDPNV-PITLTVYDHDLF 114 (202)
Q Consensus 39 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~w~e~f~f~v~~~~~-~L~i~V~d~~~~ 114 (202)
.+..-.++|.|++|.+|.+.| +|.+|||+++.++++. -++..+.+++||+|.+-|.+....+.. .++++|||+|.+
T Consensus 609 ~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 609 EPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred CcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 356677889999999999999 9999999999999876 477789999999999999998887654 489999999999
Q ss_pred CCCCccEEEEEehHh
Q 028875 115 SKDDRMGDAEFDIKT 129 (202)
Q Consensus 115 ~~d~~lG~~~i~l~~ 129 (202)
+.|+.||+..++|+.
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999985
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.63 E-value=4.2e-08 Score=86.06 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=65.8
Q ss_pred EEeecCCCCCCCCCCcEEEEEECCe----EEeceeecCCCCCeEeeeeEEEEeCC---------------C-CcEEEEEE
Q 028875 50 KRGVNLAVRDVRSSDPYVVVKMGKQ----KLKTRVIKKDVNPEWNEDLTLSITDP---------------N-VPITLTVY 109 (202)
Q Consensus 50 ~~a~~L~~~~~~~~dpyv~v~~~~~----~~~T~~~~~t~~P~w~e~f~f~v~~~---------------~-~~L~i~V~ 109 (202)
.+++++.+..++.+|||+.+...+. ..+|++.+++.+|.|+|.|.|.+... + ..|.+++|
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW 217 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW 217 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence 3455555555778999999997743 35999999999999999999998654 1 34788999
Q ss_pred e-cCCCCCCCccEEEEEehHhHHH
Q 028875 110 D-HDLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 110 d-~~~~~~d~~lG~~~i~l~~l~~ 132 (202)
+ ++....++|+|++.+++..+..
T Consensus 218 ~~~~~~~~~~FlGevrv~v~~~~~ 241 (800)
T KOG2059|consen 218 NDLNLVINDVFLGEVRVPVDVLRQ 241 (800)
T ss_pred cchhhhhhhhhceeEEeehhhhhh
Confidence 8 5555579999999999988774
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.48 E-value=1.3e-07 Score=87.04 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=77.1
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeC----CCCcEEEEEEec
Q 028875 42 LGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITD----PNVPITLTVYDH 111 (202)
Q Consensus 42 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~----~~~~L~i~V~d~ 111 (202)
.|+|.|-|..+++|+-.. ...+||||++++. ..+.+|+++++|.+|.|||...+.-.. .++.|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 688999999999996544 6689999999997 246799999999999999998876222 136699999999
Q ss_pred CCCCCCCccEEEEEehHhHHHH
Q 028875 112 DLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 112 ~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
+.+..+.++|.+.|+|.++...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~ 1624 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL 1624 (1639)
T ss_pred cceeeeeeeeeeecchhhcchh
Confidence 9998999999999999876544
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=7.8e-07 Score=77.86 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=79.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CeEEeceeecCCCCCeEeeeeEEEEeCCC----CcEEEEEEec
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKMG-------KQKLKTRVIKKDVNPEWNEDLTLSITDPN----VPITLTVYDH 111 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~w~e~f~f~v~~~~----~~L~i~V~d~ 111 (202)
..++|+|+.|.+|+-...|..-||+.+.+. +.++.|++..++..|.|||+|.|.+.+.+ -.|.|.|.|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 468899999999988878888999999875 34678889999999999999999997654 3489999999
Q ss_pred CCCCCCCccEEEEEehHhHHHHh
Q 028875 112 DLFSKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 112 ~~~~~d~~lG~~~i~l~~l~~~~ 134 (202)
.....|..+|.+.++|.++.+.+
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kG 1227 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKG 1227 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcC
Confidence 98888999999999999998764
No 122
>PLN02964 phosphatidylserine decarboxylase
Probab=98.38 E-value=9.1e-07 Score=78.85 Aligned_cols=90 Identities=19% Similarity=0.394 Sum_probs=76.1
Q ss_pred ccccceEEEEEEEEeecCCCCCCCCCCcE-EEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCc-EEEEEEecCCCC
Q 028875 38 METLLGLLRIRIKRGVNLAVRDVRSSDPY-VVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVP-ITLTVYDHDLFS 115 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpy-v~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~-L~i~V~d~~~~~ 115 (202)
.+.+.|.+.+++++|+ ++ ..|+| +++.++.+.++|.+.++|.||+||+...|.+...+.. ..|.|||.+.++
T Consensus 49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 5678999999999987 33 35886 4556788999999999999999999999999765544 699999999999
Q ss_pred CCCccEEEEEehHhHHHH
Q 028875 116 KDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l~~~ 133 (202)
.++++|.+.++|.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999988776554
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=6e-07 Score=72.72 Aligned_cols=91 Identities=31% Similarity=0.373 Sum_probs=76.9
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTV 108 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V 108 (202)
+.....-+.|+++.|.+|...| ++.+|||+..++. ..+.+|.+.+++.+|.||++|.|.+.... ..+.|.|
T Consensus 228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsv 307 (362)
T KOG1013|consen 228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSV 307 (362)
T ss_pred cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEee
Confidence 4556677899999999999999 8999999999986 34679999999999999999999987654 4589999
Q ss_pred EecCCCCCCCccEEEEEehH
Q 028875 109 YDHDLFSKDDRMGDAEFDIK 128 (202)
Q Consensus 109 ~d~~~~~~d~~lG~~~i~l~ 128 (202)
||.+.-+..+++|-....+-
T Consensus 308 gd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 308 GDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cccCCCcCccCCCccccccc
Confidence 99998878889887665543
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.20 E-value=5e-06 Score=59.00 Aligned_cols=90 Identities=20% Similarity=0.379 Sum_probs=67.6
Q ss_pred EEEEEEEeecCCCCC--------------CCCCCcEEEEEEC----CeEEeceeecCCCCCeEeeeeEEEEeC-----C-
Q 028875 45 LRIRIKRGVNLAVRD--------------VRSSDPYVVVKMG----KQKLKTRVIKKDVNPEWNEDLTLSITD-----P- 100 (202)
Q Consensus 45 L~v~v~~a~~L~~~~--------------~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~w~e~f~f~v~~-----~- 100 (202)
|.|.|++|.+|+... .-..|+||++.+. ++..+|+++.++..|.|+..++|++.- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 356777777776321 0135899999965 567899999999999999999998751 1
Q ss_pred ----------CCcEEEEEEecCCC----------CCCCccEEEEEehHhHHHHh
Q 028875 101 ----------NVPITLTVYDHDLF----------SKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 101 ----------~~~L~i~V~d~~~~----------~~d~~lG~~~i~l~~l~~~~ 134 (202)
...+.|+||+...- .+|-.||.+.||+.+|....
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 14689999997642 24558999999999988753
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=6.6e-07 Score=72.51 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=78.8
Q ss_pred ccccceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEE--eCC--CCcEEEE
Q 028875 38 METLLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSI--TDP--NVPITLT 107 (202)
Q Consensus 38 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v--~~~--~~~L~i~ 107 (202)
|......+..++..|++|++++ ++..|||++..+.. .+.+|++..+++||.|+|+..+.. .+. ...+.+.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 4455667889999999999999 89999999999872 357899999999999998765543 222 2457889
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHHh
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~~ 134 (202)
|.|.+.+.+++++|+..+++..+....
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred eccCcccccccCcccchhhhhccChhh
Confidence 999999999999999999888776644
No 126
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=4.9e-06 Score=68.59 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=77.9
Q ss_pred ccceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----eEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEE-ec
Q 028875 40 TLLGLLRIRIKRGVNLAVRD--VRSSDPYVVVKMGK-----QKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVY-DH 111 (202)
Q Consensus 40 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~-d~ 111 (202)
...|.+.|.|++|++|..+. ...++|||+|++.. .+.+|+...+|.+|.+-+...|.-..+...|.++|| |.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 35789999999999999887 34789999999862 356899999999998888889988887888999999 46
Q ss_pred CCCCCCCccEEEEEehHhHHH
Q 028875 112 DLFSKDDRMGDAEFDIKTYIE 132 (202)
Q Consensus 112 ~~~~~d~~lG~~~i~l~~l~~ 132 (202)
..+.++.|+|.+++-+.++.-
T Consensus 346 gRmd~k~fmg~aqi~l~eL~l 366 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNL 366 (405)
T ss_pred cccchHHHhhHHHHHhhhhcc
Confidence 667788899999988877654
No 127
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.67 E-value=4.2e-05 Score=50.69 Aligned_cols=85 Identities=14% Similarity=0.267 Sum_probs=62.2
Q ss_pred EEEEEeecCCCCCCCCCCc--EEEEEE--C-CeEEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEEEecCCCCCCC
Q 028875 47 IRIKRGVNLAVRDVRSSDP--YVVVKM--G-KQKLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTVYDHDLFSKDD 118 (202)
Q Consensus 47 v~v~~a~~L~~~~~~~~dp--yv~v~~--~-~~~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V~d~~~~~~d~ 118 (202)
|+|+.|++|.-.....-+| |++--+ . ...++|...+...||.|.|+|.|.+...+ -.|.|.|+. ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 6888999987665222234 444333 2 34578888888999999999999886433 448899988 445888
Q ss_pred ccEEEEEehHhHHHH
Q 028875 119 RMGDAEFDIKTYIEA 133 (202)
Q Consensus 119 ~lG~~~i~l~~l~~~ 133 (202)
.||.+.+.++++-+.
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999877554
No 128
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.61 E-value=0.00013 Score=66.15 Aligned_cols=88 Identities=20% Similarity=0.431 Sum_probs=68.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CeEEeceeecCC-CCCeEe-eeeEEE-EeCCC-CcEEEEEE
Q 028875 41 LLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMG-------KQKLKTRVIKKD-VNPEWN-EDLTLS-ITDPN-VPITLTVY 109 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t-~~P~w~-e~f~f~-v~~~~-~~L~i~V~ 109 (202)
..+++.|+|++|.-|..+.. ..||.|.+- ...++|+++..+ .||+|+ |.|.|. |--++ ..|.|.||
T Consensus 701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 45789999999999987764 489999975 246789888775 999998 557775 33344 45999999
Q ss_pred ecCCCCCCCccEEEEEehHhHHHHhc
Q 028875 110 DHDLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
+. ...+||+-.++++.+..+.+
T Consensus 778 eE----ggK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 778 EE----GGKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred cc----CCceeeeeccchhcccCcce
Confidence 97 45699999999988877654
No 129
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.59 E-value=7.3e-05 Score=62.59 Aligned_cols=95 Identities=24% Similarity=0.358 Sum_probs=73.5
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeCC------------CC
Q 028875 41 LLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITDP------------NV 102 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~~------------~~ 102 (202)
....|++.|+++.+++... .-..|-|+.+.+- .++.+|.+++.+.+|.|+|.|.+.+... ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 3456788888888876554 3345778888764 3567899999999999999999998752 14
Q ss_pred cEEEEEEecCCC-CCCCccEEEEEehHhHHHHhc
Q 028875 103 PITLTVYDHDLF-SKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 103 ~L~i~V~d~~~~-~~d~~lG~~~i~l~~l~~~~~ 135 (202)
.+.|+||++..+ ..|.++|.+.+.|..|....+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~ce 478 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE 478 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccc
Confidence 589999998775 478899999999988876543
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.52 E-value=1.6e-05 Score=72.53 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=72.2
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeC---------CC-CcEEEEEE
Q 028875 41 LLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITD---------PN-VPITLTVY 109 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~---------~~-~~L~i~V~ 109 (202)
....+++.|.+|+.|...+ .+.+|||+.+.+.++...|.++.+|+||.|++..+|.--. .+ ..+.++||
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 4455777788999999888 7889999999999999999999999999999998885321 12 23789999
Q ss_pred ecCCCCCCCccEEEEEeh
Q 028875 110 DHDLFSKDDRMGDAEFDI 127 (202)
Q Consensus 110 d~~~~~~d~~lG~~~i~l 127 (202)
|.+..+.++|+|+.....
T Consensus 284 d~dr~g~~ef~gr~~~~p 301 (1105)
T KOG1326|consen 284 DLDRSGINEFKGRKKQRP 301 (1105)
T ss_pred hhhhhchHHhhcccccce
Confidence 999999999999876544
No 131
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.44 E-value=0.00036 Score=60.66 Aligned_cols=82 Identities=32% Similarity=0.537 Sum_probs=65.8
Q ss_pred EEeecCCCCC-CCCCCcEEEEEEC------CeEEeceeecCCCCCeEeeeeEEEEe-----CCCCcEEEEEEecCCCCCC
Q 028875 50 KRGVNLAVRD-VRSSDPYVVVKMG------KQKLKTRVIKKDVNPEWNEDLTLSIT-----DPNVPITLTVYDHDLFSKD 117 (202)
Q Consensus 50 ~~a~~L~~~~-~~~~dpyv~v~~~------~~~~~T~~~~~t~~P~w~e~f~f~v~-----~~~~~L~i~V~d~~~~~~d 117 (202)
.+|++|..++ ++++|||..+.-- ...++|.+++++++|.|.+ |.+... +.+..+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 3567888888 8899999888743 1357999999999999987 343332 3457799999999999899
Q ss_pred CccEEEEEehHhHHH
Q 028875 118 DRMGDAEFDIKTYIE 132 (202)
Q Consensus 118 ~~lG~~~i~l~~l~~ 132 (202)
+++|.+..++..+..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998864
No 132
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.12 E-value=0.012 Score=43.61 Aligned_cols=95 Identities=13% Similarity=0.223 Sum_probs=67.7
Q ss_pred cccceEEEEEEEEeecCCCCCC---CCCCcEE--EEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC------------
Q 028875 39 ETLLGLLRIRIKRGVNLAVRDV---RSSDPYV--VVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN------------ 101 (202)
Q Consensus 39 ~~~~g~L~v~v~~a~~L~~~~~---~~~dpyv--~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~------------ 101 (202)
.+....|.++|..++-+...-. +..+... -+.+.+++++|+.+..+.+|.|+|.|-|++....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3456778999998885432211 3444444 4445699999999999999999999999986431
Q ss_pred --CcEEEEEEecCCCCCCCccEEEEEehHhHHHH
Q 028875 102 --VPITLTVYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 102 --~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
..+++.|..-+..+...++|.-.++=..+...
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 45888888777766667888877776655543
No 133
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.93 E-value=0.0068 Score=45.14 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=69.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEEecC
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKM--GKQK----LKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVYDHD 112 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~d~~ 112 (202)
..+.|+|+++.++...+ ..+-||.+.+ +++. ..|+.+.. .++.|||...|++.-. +..|.|+||+..
T Consensus 8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 46789999999887643 4577887754 3332 23443333 6799999999988643 355999999865
Q ss_pred CCC----CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCC
Q 028875 113 LFS----KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSR 154 (202)
Q Consensus 113 ~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~ 154 (202)
... ....+|.+.++|-+.. ..+..|.....+.+.+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~-------~~Lr~G~~~L~lW~~~ 123 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYT-------DTLVSGKMALNLWPVP 123 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCC-------ChhhCCCEEEEEEcCC
Confidence 421 2246999999997633 2456777777777643
No 134
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.84 E-value=0.0082 Score=45.40 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=70.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCe----EEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEEecC
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKM--GKQ----KLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVYDHD 112 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~d~~ 112 (202)
..+.|+|+.+.++...+ ...+-||.+.+ +++ ...|+.+.-...+.|||.+.|++.-. +..|.|+||+..
T Consensus 8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 46889999999987622 23556766643 443 33555554456799999999987643 355999999865
Q ss_pred CCC----------------CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCC
Q 028875 113 LFS----------------KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRH 155 (202)
Q Consensus 113 ~~~----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 155 (202)
... ....||.+.++|-+... .+..|.....+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~-------~Lr~G~~~L~lW~~~~ 138 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG-------QLKTGDHTLYMWTYAE 138 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccc-------hhhcCCeEEEecCCCc
Confidence 321 24689999999876432 3556777677666544
No 135
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.83 E-value=0.096 Score=37.89 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=80.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE---EeceeecC-CCCCeEeeeeEEEEeC---C------CCcEEEE
Q 028875 41 LLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQK---LKTRVIKK-DVNPEWNEDLTLSITD---P------NVPITLT 107 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~---~~T~~~~~-t~~P~w~e~f~f~v~~---~------~~~L~i~ 107 (202)
..-.+.|+|.+..+++. .....|+.+..++.. ..|..... +-.-.|+|.|.+.+.. . ...+.|.
T Consensus 5 ~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 34567888899888875 234556777666543 45544333 3568999999987752 1 1347899
Q ss_pred EEecCCCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCCCccCCCceeEeeCCcEEEEEEEEeccc--cee
Q 028875 108 VYDHDLFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRHNCLSEQSCVVWKEGKVVQDLVLRLRNV--ECG 185 (202)
Q Consensus 108 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G 185 (202)
|+....-++...+|.+.++|++...... . ....-+.|... ...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~---------------------------------~--~~~~~~~l~~~~~~~a 126 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDE---------------------------------E--PITVRLLLKKCKKSNA 126 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCC---------------------------------C--cEEEEEeCccCCCCCc
Confidence 9887543333689999999999886420 0 12344555543 367
Q ss_pred eEEEEEEEEeCCCCC
Q 028875 186 ELEIQLQWIDLPGSK 200 (202)
Q Consensus 186 ~i~l~l~~~~~~~~~ 200 (202)
.|++.+++..+.+.+
T Consensus 127 ~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 127 TLSISISLSELREDP 141 (143)
T ss_pred EEEEEEEEEECccCC
Confidence 899999998887653
No 136
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.72 E-value=0.0089 Score=44.27 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=68.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCe----EEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEEecC
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKM--GKQ----KLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVYDHD 112 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~d~~ 112 (202)
..+.|++....+....+....+-|+.+.+ +++ ...|+......++.|||...|++.-. +..|.|+||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 35677777777765422334566666654 333 22444443346799999999987543 355999999976
Q ss_pred CCC--CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCC
Q 028875 113 LFS--KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRH 155 (202)
Q Consensus 113 ~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 155 (202)
... .+..||.+.++|-+.. ..+..|.....+.+...
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~-------~~L~~G~~~l~lW~~~~ 125 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK-------GKLRQGMITLNLWPGKK 125 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc-------CcEecCCEEEeccCCcc
Confidence 553 4578999999997643 24556776666665443
No 137
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.61 E-value=0.0049 Score=50.27 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=63.7
Q ss_pred cccceEEEEEEEEeecCCCCC--CC-CCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCC
Q 028875 39 ETLLGLLRIRIKRGVNLAVRD--VR-SSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLF 114 (202)
Q Consensus 39 ~~~~g~L~v~v~~a~~L~~~~--~~-~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~ 114 (202)
....|.|.+.+.++++|+-.. .| ..+.||++.++.+ +.+|.+.....--.|.|+|...+.. ...+.+-||.|+.-
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 346788999999999998654 23 5688999998854 4466665555666889999988864 45688889988876
Q ss_pred CCCCccEEEEEehHhH
Q 028875 115 SKDDRMGDAEFDIKTY 130 (202)
Q Consensus 115 ~~d~~lG~~~i~l~~l 130 (202)
.++++.-...+.+..+
T Consensus 126 ~RHKLC~~g~l~~~~v 141 (442)
T KOG1452|consen 126 RRHKLCHLGLLEAFVV 141 (442)
T ss_pred hhccccccchhhhhhh
Confidence 5665533333444433
No 138
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.54 E-value=0.025 Score=47.20 Aligned_cols=84 Identities=21% Similarity=0.365 Sum_probs=70.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC--------CCcEEEEEEecC-CCC
Q 028875 45 LRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP--------NVPITLTVYDHD-LFS 115 (202)
Q Consensus 45 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~--------~~~L~i~V~d~~-~~~ 115 (202)
+.|.|++|++++... ...-.+..++++....|..+..+..|.||-.+.+++... ..+|++++|..+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578899999998763 445678888999999999999999999999999988642 356999999987 455
Q ss_pred CCCccEEEEEehHhH
Q 028875 116 KDDRMGDAEFDIKTY 130 (202)
Q Consensus 116 ~d~~lG~~~i~l~~l 130 (202)
..+.+|.+.++|...
T Consensus 80 ~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 80 KRESIGYVVLDLRSA 94 (340)
T ss_pred cceeccEEEEEcccc
Confidence 788999999999766
No 139
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.51 E-value=0.0099 Score=44.31 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=59.1
Q ss_pred CCCcEEEEEEC--Ce----EEeceeecCCCCCeEeeeeEEEEeCCC----CcEEEEEEecCCCCCCCccEEEEEehHhHH
Q 028875 62 SSDPYVVVKMG--KQ----KLKTRVIKKDVNPEWNEDLTLSITDPN----VPITLTVYDHDLFSKDDRMGDAEFDIKTYI 131 (202)
Q Consensus 62 ~~dpyv~v~~~--~~----~~~T~~~~~t~~P~w~e~f~f~v~~~~----~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~ 131 (202)
.++-||.+.+- ++ ..+|+.+.-+..+.|||...|++.-.+ ..|.|+||+.+..+....+|.+.++|-+-.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~ 108 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKD 108 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCC
Confidence 46777777543 33 234544444567899999999987433 559999999876556778999999996531
Q ss_pred HHhcCCcccCCCceEEEEEeeCCC
Q 028875 132 EALKMNLDSLPTGTIISRVMPSRH 155 (202)
Q Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~ 155 (202)
..+..|.....+.+...
T Consensus 109 -------g~Lr~G~~~l~lw~~~~ 125 (159)
T cd08397 109 -------GTLRRGRQKLRVWPDVE 125 (159)
T ss_pred -------CcEecCCEEEEEEeCCC
Confidence 24556666666665544
No 140
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.32 E-value=0.061 Score=36.05 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=49.2
Q ss_pred CCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhHH
Q 028875 62 SSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYI 131 (202)
Q Consensus 62 ~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~ 131 (202)
..+-.+++++++. ..+|.-... .+..|++.|.+.+.. ...|+|.||-+|. .++-|...+.|++..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~ 73 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER 73 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc
Confidence 4677889999875 446654433 578999999999963 6779999998764 456788888998843
No 141
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.29 E-value=0.05 Score=41.28 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=65.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE---EeceeecCCCCCeEeeeeEEEEeCCC----CcEEEEEEecCC
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKM--GKQK---LKTRVIKKDVNPEWNEDLTLSITDPN----VPITLTVYDHDL 113 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~w~e~f~f~v~~~~----~~L~i~V~d~~~ 113 (202)
..++|+|..+..+.........-||.+.+ ++.. .+|....-+.++.|||.+.|++.-.+ ..|.|+||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 35777887776332222222334555533 3322 24555555677999999999886543 559999998532
Q ss_pred CC----------------CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCCC
Q 028875 114 FS----------------KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSRH 155 (202)
Q Consensus 114 ~~----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 155 (202)
.. .+..||.+.+.|-+.. ..+..|.....+.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~-------~~Lr~G~~~L~~W~~~~ 140 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR-------FLLRTGEYVLHMWQISG 140 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCC-------CceecCCEEEEEecCCC
Confidence 11 2457888888886533 25677888888888654
No 142
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.67 E-value=0.1 Score=39.31 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=70.8
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CCeE----Eeceeec--C--CCCCeEeeeeEEEEeCC----CCcEE
Q 028875 41 LLGLLRIRIKRGVNLAVRD-VRSSDPYVVVKM--GKQK----LKTRVIK--K--DVNPEWNEDLTLSITDP----NVPIT 105 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~--~~~~----~~T~~~~--~--t~~P~w~e~f~f~v~~~----~~~L~ 105 (202)
....+.|+|.++.+++... ....+-|+.+.+ +++. ..|+... + ...+.|||...|++.-. +..|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 3456889999999987765 335677887754 3433 2443221 1 23577999999988533 35599
Q ss_pred EEEEecCCCC---------CCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeCC
Q 028875 106 LTVYDHDLFS---------KDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPSR 154 (202)
Q Consensus 106 i~V~d~~~~~---------~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~ 154 (202)
|++|+..... .+..||.+.++|-+... .+..|.....+.+..
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~-------~L~~G~~~L~lW~~~ 136 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG-------VLRQGSLLLGLWPPS 136 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcchh-------hhccCCEEEEeccCC
Confidence 9999876543 35689999999976432 345676666666543
No 143
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.08 E-value=0.15 Score=37.13 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=49.6
Q ss_pred eceeecCC-CCCeEeeeeEEEEeCC----CCcEEEEEEecCCCCCC----CccEEEEEehHhHHHHhcCCcccCCCceEE
Q 028875 77 KTRVIKKD-VNPEWNEDLTLSITDP----NVPITLTVYDHDLFSKD----DRMGDAEFDIKTYIEALKMNLDSLPTGTII 147 (202)
Q Consensus 77 ~T~~~~~t-~~P~w~e~f~f~v~~~----~~~L~i~V~d~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~ 147 (202)
.|+...-+ .++.|||.+.|++.-. +..|.|+||..+..... ..||.+.++|-+.. ..+..|...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~-------~~L~~G~~~ 95 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR-------GQLRQGPQK 95 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT-------SBBEEEEEE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC-------CcccCCCEE
Confidence 56656555 7999999999998632 35599999997766444 68999999987642 234567777
Q ss_pred EEEeeCCC
Q 028875 148 SRVMPSRH 155 (202)
Q Consensus 148 ~~~~~~~~ 155 (202)
..+.+...
T Consensus 96 L~lW~~~~ 103 (142)
T PF00792_consen 96 LSLWPDEE 103 (142)
T ss_dssp EE-EET-T
T ss_pred EEEEcCCC
Confidence 77777655
No 144
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=94.48 E-value=1.5 Score=32.87 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred CCCcEEEEEECCe-EEeceeecCC--CCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhH
Q 028875 62 SSDPYVVVKMGKQ-KLKTRVIKKD--VNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTY 130 (202)
Q Consensus 62 ~~dpyv~v~~~~~-~~~T~~~~~t--~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l 130 (202)
...-|+++.++++ ..+|+...-+ ..-.|+|.|.+.+..--+.|.++||.... ..+..|+.+.+++-..
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 4567899999865 4466554432 33567899999997755779999999988 4888999999998543
No 145
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.91 E-value=0.8 Score=35.09 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=41.6
Q ss_pred eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEecCCCCC--CCccEEEEEehH
Q 028875 74 QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYDHDLFSK--DDRMGDAEFDIK 128 (202)
Q Consensus 74 ~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d~~~~~~--d~~lG~~~i~l~ 128 (202)
..++|-+...+.+|.|+|++.+.+... ...|.|++++...-.+ ...+|-+.++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 357888999999999999999988643 3558898887554321 257899999983
No 146
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=92.97 E-value=0.25 Score=43.42 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=50.4
Q ss_pred EEeceeecCCCCCeEeeeeEEEEeCCC-CcEEEEEEecCCC----CCCCccEEEEEehHhHHHHhcC
Q 028875 75 KLKTRVIKKDVNPEWNEDLTLSITDPN-VPITLTVYDHDLF----SKDDRMGDAEFDIKTYIEALKM 136 (202)
Q Consensus 75 ~~~T~~~~~t~~P~w~e~f~f~v~~~~-~~L~i~V~d~~~~----~~d~~lG~~~i~l~~l~~~~~~ 136 (202)
..+|.++.+.+||.|.+.|.+...... +.+++.+++.+.. ...+|+|++...+..+......
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~ 108 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL 108 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence 458999999999999999988776544 5589999986653 4778999999999998876544
No 147
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.75 E-value=0.51 Score=35.84 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=33.4
Q ss_pred EEeceeecCCCCCeEeeeeEEEEeCCC---CcEEEEEEecCCCCC---CCccEEEEEehHh
Q 028875 75 KLKTRVIKKDVNPEWNEDLTLSITDPN---VPITLTVYDHDLFSK---DDRMGDAEFDIKT 129 (202)
Q Consensus 75 ~~~T~~~~~t~~P~w~e~f~f~v~~~~---~~L~i~V~d~~~~~~---d~~lG~~~i~l~~ 129 (202)
.+.|.+..++.+|.|+|+|.+.+.... ..|.|++++...-.. ...+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467778888899999999999887532 448999998655321 2689999999965
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=92.56 E-value=0.95 Score=30.80 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=42.3
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEE--CCe----EEeceeecCCCCCeEeeeeEEEEeCC----CCcEEEEEEecC
Q 028875 45 LRIRIKRGVNLAVRDVR-SSDPYVVVKM--GKQ----KLKTRVIKKDVNPEWNEDLTLSITDP----NVPITLTVYDHD 112 (202)
Q Consensus 45 L~v~v~~a~~L~~~~~~-~~dpyv~v~~--~~~----~~~T~~~~~t~~P~w~e~f~f~v~~~----~~~L~i~V~d~~ 112 (202)
+.+.+...++....... ..+-||.+.+ +++ ...|+.+.-...+.|||...|++.-. +..|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44556666655444322 2477888764 333 23454444445689999999987643 355999999854
No 149
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.54 E-value=1.8 Score=33.30 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=41.4
Q ss_pred eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEecCCCC-C---CCccEEEEEehH
Q 028875 74 QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYDHDLFS-K---DDRMGDAEFDIK 128 (202)
Q Consensus 74 ~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d~~~~~-~---d~~lG~~~i~l~ 128 (202)
..++|-+...+.+|.|+|++.+.+... ...|.|++++...-. + ...+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 467888888899999999999988643 355999998865321 2 246899999884
No 150
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=92.44 E-value=0.86 Score=31.59 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=36.4
Q ss_pred EEEEEECC-eEEeceeecCCCCCeEeeeeEEEEeCCC--------CcEEEEEEecCCCCCCCccEEEEEehHhHHHHh
Q 028875 66 YVVVKMGK-QKLKTRVIKKDVNPEWNEDLTLSITDPN--------VPITLTVYDHDLFSKDDRMGDAEFDIKTYIEAL 134 (202)
Q Consensus 66 yv~v~~~~-~~~~T~~~~~t~~P~w~e~f~f~v~~~~--------~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 134 (202)
||.+.+-. +.+.|.++. +.+|.+|-+-.|.+...+ ..+.++++..-.. ....+|.+++++..+.+..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCC
Confidence 56666554 455666665 789999988888887542 6699999987643 5678999999999998654
No 151
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=92.14 E-value=3.9 Score=30.61 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=52.3
Q ss_pred EEEEEeecCCCCCCCCCCcEEEEEEC----------Ce-EEeceeecC-----CCCCeEeeeeEEEEeCCC----CcEEE
Q 028875 47 IRIKRGVNLAVRDVRSSDPYVVVKMG----------KQ-KLKTRVIKK-----DVNPEWNEDLTLSITDPN----VPITL 106 (202)
Q Consensus 47 v~v~~a~~L~~~~~~~~dpyv~v~~~----------~~-~~~T~~~~~-----t~~P~w~e~f~f~v~~~~----~~L~i 106 (202)
=.|..|.+.. ..+-||+..+. .. ...|.+... ...-.||.-|++...... ..|.|
T Consensus 6 G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 6 GEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 3566777653 44678888764 12 455655543 234679988877765432 45999
Q ss_pred EEEecCCCCCCCccEEEEEeh
Q 028875 107 TVYDHDLFSKDDRMGDAEFDI 127 (202)
Q Consensus 107 ~V~d~~~~~~d~~lG~~~i~l 127 (202)
+||..|..+++...|-..+.|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 999999999999988776665
No 152
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=89.50 E-value=0.35 Score=44.82 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=58.9
Q ss_pred CCcEEEEEECCeEE-eceeecCC-CCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhHHHH
Q 028875 63 SDPYVVVKMGKQKL-KTRVIKKD-VNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 63 ~dpyv~v~~~~~~~-~T~~~~~t-~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~ 133 (202)
.++|+.+.+....+ +|....+. .+|.|.+.|..........+++++-+.+..+....+|.+.++...+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 37888888875543 67766676 7899999999998888888999999988887688999999999888764
No 153
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.71 E-value=0.24 Score=44.68 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=48.1
Q ss_pred CCCcEEEEEECCe-EEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCCCCCCccEEEEEehHhHH
Q 028875 62 SSDPYVVVKMGKQ-KLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLFSKDDRMGDAEFDIKTYI 131 (202)
Q Consensus 62 ~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~ 131 (202)
..+||+.+.+... ...+.+.+.+..|.|+++|++.+. .+..+.|.|+.......+.+...+.+..++++
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 4688988888733 335555677899999999999975 36778999998875545544555455444444
No 154
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=86.87 E-value=2.5 Score=31.93 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=38.9
Q ss_pred EEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEecCCC-----CCCCccEEEEEehHh
Q 028875 75 KLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYDHDLF-----SKDDRMGDAEFDIKT 129 (202)
Q Consensus 75 ~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d~~~~-----~~d~~lG~~~i~l~~ 129 (202)
.++|-+..+ .+|.|+|++.+.+... ...|.|++++...- .....+|.+.++|-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 345555544 8999999999988532 35599999986532 235689999999853
No 155
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=86.42 E-value=2.7 Score=31.96 Aligned_cols=56 Identities=13% Similarity=0.251 Sum_probs=41.5
Q ss_pred eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEecCCCC------CCCccEEEEEehHh
Q 028875 74 QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYDHDLFS------KDDRMGDAEFDIKT 129 (202)
Q Consensus 74 ~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d~~~~~------~d~~lG~~~i~l~~ 129 (202)
..+.|.+...+.+|.|+|++.+.+... ...|.|+.++.+.-. ....+|-+.++|-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456788888999999999999887642 345889998844321 13569999999853
No 156
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=83.90 E-value=5 Score=30.69 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=41.5
Q ss_pred eEEeceeecCCCCCeEeeeeEEEEeCC---CCcEEEEEEecCCC--C-------CCCccEEEEEehHh
Q 028875 74 QKLKTRVIKKDVNPEWNEDLTLSITDP---NVPITLTVYDHDLF--S-------KDDRMGDAEFDIKT 129 (202)
Q Consensus 74 ~~~~T~~~~~t~~P~w~e~f~f~v~~~---~~~L~i~V~d~~~~--~-------~d~~lG~~~i~l~~ 129 (202)
....|.+...+.+|.|.|++.+.+... ...|.|+.++.+.. . ....+|-+.++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 456788888999999999998887532 34599999986521 1 13568999999854
No 157
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=83.54 E-value=23 Score=29.92 Aligned_cols=81 Identities=16% Similarity=0.329 Sum_probs=56.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEe--eeeEEEEeCCCCcEEEEEEecCCCCCCCccE
Q 028875 44 LLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWN--EDLTLSITDPNVPITLTVYDHDLFSKDDRMG 121 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~--e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG 121 (202)
.|-|.|.+-.++. .....|+.+..++...+|..+.-+..-.-+ +.....++.-+..|.+.+|-.... +..-||
T Consensus 59 ~LLVeI~EI~~i~----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIg 133 (508)
T PTZ00447 59 YLLVKINEIFNIN----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIG 133 (508)
T ss_pred eEEEEehhhhccc----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEE
Confidence 4666666654442 356789999999988888655444333323 445555555567799999988776 677899
Q ss_pred EEEEehHh
Q 028875 122 DAEFDIKT 129 (202)
Q Consensus 122 ~~~i~l~~ 129 (202)
.+.+.++.
T Consensus 134 dI~InIn~ 141 (508)
T PTZ00447 134 QIKIDINA 141 (508)
T ss_pred EEEecccH
Confidence 99999874
No 158
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=72.55 E-value=0.53 Score=42.29 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=50.4
Q ss_pred ccceEEEEEEEEeecCCCCC-----CCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCC--CcEEEEEEecC
Q 028875 40 TLLGLLRIRIKRGVNLAVRD-----VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPN--VPITLTVYDHD 112 (202)
Q Consensus 40 ~~~g~L~v~v~~a~~L~~~~-----~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~--~~L~i~V~d~~ 112 (202)
...|..-++++.|.++.+.- .-..++++...++.+.++|+....+.+|.|||. .++..+-+ ..|...|-+++
T Consensus 277 d~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 277 DFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 34455556667777664432 235789999999999999999999999999996 55554432 22545554444
Q ss_pred CCC
Q 028875 113 LFS 115 (202)
Q Consensus 113 ~~~ 115 (202)
...
T Consensus 356 ~~~ 358 (975)
T KOG2419|consen 356 ELD 358 (975)
T ss_pred ccc
Confidence 443
No 159
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=69.50 E-value=35 Score=29.48 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCeEEeceeecCC----CCC-eE---eeeeEEEEe-------CC-----CCcEEEEEEecCC-----C-C
Q 028875 62 SSDPYVVVKMGKQKLKTRVIKKD----VNP-EW---NEDLTLSIT-------DP-----NVPITLTVYDHDL-----F-S 115 (202)
Q Consensus 62 ~~dpyv~v~~~~~~~~T~~~~~t----~~P-~w---~e~f~f~v~-------~~-----~~~L~i~V~d~~~-----~-~ 115 (202)
....||+|++.+...+|..+.-- .+| .- -..|++.-. .+ ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 45779999999876666543221 111 11 122333211 11 1459999998332 2 3
Q ss_pred CCCccEEEEEehH
Q 028875 116 KDDRMGDAEFDIK 128 (202)
Q Consensus 116 ~d~~lG~~~i~l~ 128 (202)
...+||.+.++|+
T Consensus 115 ~~klLG~v~vpld 127 (460)
T PF06219_consen 115 SGKLLGKVRVPLD 127 (460)
T ss_pred cceEEEEEEEEec
Confidence 5678999999986
No 160
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=67.00 E-value=40 Score=32.02 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=62.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC----Ce----EEeceeecCCCCCeEeeeeEEEEeCCC----CcEEEEEEe
Q 028875 43 GLLRIRIKRGVNLAVRDVRSSDPYVVVKMG----KQ----KLKTRVIKKDVNPEWNEDLTLSITDPN----VPITLTVYD 110 (202)
Q Consensus 43 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~----~~----~~~T~~~~~t~~P~w~e~f~f~v~~~~----~~L~i~V~d 110 (202)
..++|+++.+.+.... ...|-+|.|..+ .+ ...|.-+....+|.||+...|.+.-.+ ..|.|.||.
T Consensus 343 ~~frI~l~~is~~n~~--~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP--ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCC--cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 4577777776644322 245667776654 22 244555555678999999988886543 336666665
Q ss_pred cC----------------CCCCCCccEEEEEehHhHHHHhcCCcccCCCceEEEEEeeC
Q 028875 111 HD----------------LFSKDDRMGDAEFDIKTYIEALKMNLDSLPTGTIISRVMPS 153 (202)
Q Consensus 111 ~~----------------~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~ 153 (202)
-. .-+.+-.+|.+.+.|-+.... +..|....+..+.
T Consensus 421 v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~-------LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 421 VKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQ-------LRTGEYVLHMWPS 472 (1076)
T ss_pred eechhccccccchhhhhccccccCceEEEeeeeeechhh-------hhcCceEEEecCC
Confidence 31 012344678888877666543 4567777776664
No 161
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.83 E-value=5.1 Score=36.42 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=35.1
Q ss_pred CeEeeeeEEEEeCCC----CcEEEEEEecCCCCCCCccEEEEEehHh
Q 028875 87 PEWNEDLTLSITDPN----VPITLTVYDHDLFSKDDRMGDAEFDIKT 129 (202)
Q Consensus 87 P~w~e~f~f~v~~~~----~~L~i~V~d~~~~~~d~~lG~~~i~l~~ 129 (202)
-.|||..++++.-.+ ..+.|++|+.+.-....++|..++.+..
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 459999999987543 5599999998877788899999988763
No 162
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=58.84 E-value=90 Score=26.35 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=61.2
Q ss_pred cceEEEEEEEEeecCCCCC-------CCCCCcEEEEEECCeEEeceeecCCCCCeEe-eeeE-EEEeCC----------C
Q 028875 41 LLGLLRIRIKRGVNLAVRD-------VRSSDPYVVVKMGKQKLKTRVIKKDVNPEWN-EDLT-LSITDP----------N 101 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~-------~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~-e~f~-f~v~~~----------~ 101 (202)
..-+|.|++..|+||...- .+....|...++-+....|.......+|.+. +.-. +.+... .
T Consensus 190 d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~ 269 (340)
T PF12416_consen 190 DLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQI 269 (340)
T ss_pred ceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhC
Confidence 3567889999999887651 1234566677777777777777777888774 3333 666432 2
Q ss_pred CcEEEEEEecCCCCCCCccEEEEEehHhHHHHhc
Q 028875 102 VPITLTVYDHDLFSKDDRMGDAEFDIKTYIEALK 135 (202)
Q Consensus 102 ~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~ 135 (202)
..|.|.++. .+..||.+.+++..+.....
T Consensus 270 ~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~~ 298 (340)
T PF12416_consen 270 PKLQIHLCC-----GNQSLGSTSVPLQPLLPKDS 298 (340)
T ss_pred CCeEEEEee-----CCcEEEEEEEEhhhccCCCc
Confidence 346676666 45679999999999876543
No 163
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=56.77 E-value=74 Score=23.15 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCC-------------CCcEEEEEEecCCCCCCCccEEEEEehH
Q 028875 62 SSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDP-------------NVPITLTVYDHDLFSKDDRMGDAEFDIK 128 (202)
Q Consensus 62 ~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~-------------~~~L~i~V~d~~~~~~d~~lG~~~i~l~ 128 (202)
..|-|..+++-++.++|+......-=.++|.|.|.-... ...+.|+++.+... ....|+...-++.
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~-~g~iLA~ye~n~r 97 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPP-AGEILAYYEENTR 97 (140)
T ss_pred CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCC-CCcEEEEEecccc
Confidence 568999999999999998776555556789999975422 25588888887665 3667787777776
Q ss_pred hHH
Q 028875 129 TYI 131 (202)
Q Consensus 129 ~l~ 131 (202)
++.
T Consensus 98 DfL 100 (140)
T PF14909_consen 98 DFL 100 (140)
T ss_pred ceE
Confidence 654
No 164
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=54.33 E-value=7.2 Score=36.71 Aligned_cols=55 Identities=25% Similarity=0.515 Sum_probs=44.2
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CeEEeceeecCCCCCeEeeeeEEEEeC
Q 028875 41 LLGLLRIRIKRGVNLAVRDVRSSDPYVVVKMG-----KQKLKTRVIKKDVNPEWNEDLTLSITD 99 (202)
Q Consensus 41 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~f~f~v~~ 99 (202)
..|.+.+.+.+|..+.. ..+.||...+. ..+-+|+++.++..|.||++++.++-.
T Consensus 757 ~ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE 816 (1112)
T ss_pred cccceeeeecccccccc----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh
Confidence 56889999999988864 35678887765 346689999999999999999988753
No 165
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=46.90 E-value=52 Score=30.18 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=56.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeceeecCCCCCeEeeeeEEEEeCCCCcEEEEEEecCCC---CCCCcc
Q 028875 44 LLRIRIKRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPEWNEDLTLSITDPNVPITLTVYDHDLF---SKDDRM 120 (202)
Q Consensus 44 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~f~f~v~~~~~~L~i~V~d~~~~---~~d~~l 120 (202)
-+.|.|.+.++|+.... ..=.||...+.+.+.+|.... ...|.|.-+=.|...++-..+++.+|..... -.|.-+
T Consensus 342 smevvvmevqglksvap-nrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP-NRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccCC-CeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 35677888888876541 123699999999888887553 3479999888888777666678888775431 155667
Q ss_pred EEEEEe
Q 028875 121 GDAEFD 126 (202)
Q Consensus 121 G~~~i~ 126 (202)
|++.+.
T Consensus 420 grvil~ 425 (1218)
T KOG3543|consen 420 GRVILQ 425 (1218)
T ss_pred CeEEEe
Confidence 776654
No 166
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=36.55 E-value=63 Score=20.75 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCCCCCCccEEEEEeh
Q 028875 101 NVPITLTVYDHDLFSKDDRMGDAEFDI 127 (202)
Q Consensus 101 ~~~L~i~V~d~~~~~~d~~lG~~~i~l 127 (202)
.....|++|+.+.+..|++|+.+..+-
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td~ 37 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTDS 37 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEECC
Confidence 355779999999877999999877753
No 167
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.38 E-value=1.9e+02 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.8
Q ss_pred CcEEEEEEecCCCCCCCccEEEEE
Q 028875 102 VPITLTVYDHDLFSKDDRMGDAEF 125 (202)
Q Consensus 102 ~~L~i~V~d~~~~~~d~~lG~~~i 125 (202)
..|.++||+.|.+++.+..|....
T Consensus 74 prl~~qiw~~dnfgr~eiagyg~~ 97 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGYGFC 97 (175)
T ss_pred ceeeeeeeecCcccceeecccceE
Confidence 459999999999988887655433
No 168
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=27.62 E-value=2.4e+02 Score=20.40 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=38.1
Q ss_pred ccCCCceEEEEEeeCCC--CccCCCceeEeeCCcEEEEEEEEecccceeeEEEEEEEEeCCC
Q 028875 139 DSLPTGTIISRVMPSRH--NCLSEQSCVVWKEGKVVQDLVLRLRNVECGELEIQLQWIDLPG 198 (202)
Q Consensus 139 ~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~i~l~l~~~~~~~ 198 (202)
.-++.|+.+.+|..... ......++-.++.|+- -..-+..+..+.+.+.+++.|++--+
T Consensus 32 ~lMpsG~~I~~W~S~~nyq~~r~~P~LPlLk~g~~-Y~i~~n~~~~P~~s~~~ki~F~dr~~ 92 (135)
T TIGR03711 32 PLMPSGETIHTWSSLTNYQAARTVPSLPLLKRGQT-YKLSLNADASPEGSVYLKITFFDRQG 92 (135)
T ss_pred cCCCCCCEEEEEEeeecccccCCCCCCcEEcCCCE-EEEEEeeeeCCCceEEEEEEEeccCC
Confidence 35788999999988743 1111133334455552 25556666778899999999987543
No 169
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=26.12 E-value=2.2e+02 Score=19.49 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=22.5
Q ss_pred CcEEEEEEecCC---CCCCCccEEEEEehHhHHHH
Q 028875 102 VPITLTVYDHDL---FSKDDRMGDAEFDIKTYIEA 133 (202)
Q Consensus 102 ~~L~i~V~d~~~---~~~d~~lG~~~i~l~~l~~~ 133 (202)
..|.+.+++... .....+||.+.+++.+....
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~ 63 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNR 63 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHH
Confidence 457776665432 34667899999999987654
No 170
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.92 E-value=2e+02 Score=21.49 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=28.7
Q ss_pred eEeeeeEEEEeCCC----CcEEEEEEecCCCCCCCccEEEEEeh
Q 028875 88 EWNEDLTLSITDPN----VPITLTVYDHDLFSKDDRMGDAEFDI 127 (202)
Q Consensus 88 ~w~e~f~f~v~~~~----~~L~i~V~d~~~~~~d~~lG~~~i~l 127 (202)
+||--++....... ..|.+.||..+-+++|.+.|-..+.+
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hi 108 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHI 108 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEec
Confidence 56655554443322 45899999999999999998877665
No 171
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.36 E-value=2.7e+02 Score=19.44 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=45.2
Q ss_pred EEeecCCCCC-CCCCCcEEEEEECCeEE-eceeecCCCCCeE-eeeeEEEEeC---CCCcEEEEEEecCC-CCCCCccEE
Q 028875 50 KRGVNLAVRD-VRSSDPYVVVKMGKQKL-KTRVIKKDVNPEW-NEDLTLSITD---PNVPITLTVYDHDL-FSKDDRMGD 122 (202)
Q Consensus 50 ~~a~~L~~~~-~~~~dpyv~v~~~~~~~-~T~~~~~t~~P~w-~e~f~f~v~~---~~~~L~i~V~d~~~-~~~d~~lG~ 122 (202)
+.-...+..+ .+.+.||+.+.-+.... .+...... .... ...+.+.+.. -...+.|.+|+... ...++.+.+
T Consensus 11 I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~ 89 (134)
T PF10409_consen 11 IILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKEKMFR 89 (134)
T ss_dssp EEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCEEEEE
T ss_pred EEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccCeEEE
Confidence 3334555444 45789999999887665 33322111 1111 1223333321 13678899999873 336667888
Q ss_pred EEEehHhHH
Q 028875 123 AEFDIKTYI 131 (202)
Q Consensus 123 ~~i~l~~l~ 131 (202)
+++.-.-+.
T Consensus 90 ~~FnT~Fi~ 98 (134)
T PF10409_consen 90 FWFNTGFIE 98 (134)
T ss_dssp EEEEGGGSB
T ss_pred EEEeeeeee
Confidence 887765443
Done!