BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028878
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
CVFC I+ G++PA+++YE + L ILD P + GH+L++PK+H L TPP VA M A
Sbjct: 7 CVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAA 66
Query: 111 KVPLISNAIMKAT-DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSES--LRRR 167
I+ A ++ AD N+ +N+G AA Q +FH H+H++PR+ D L ++ +RR
Sbjct: 67 VGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMVMRRD 126
Query: 168 PLKIDQETS 176
P D+E S
Sbjct: 127 P---DREES 132
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 105
G NDC+FCKI+ G+ P+ K+YE + L LD + + GH+L++PK H +
Sbjct: 33 GSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQA 92
Query: 106 AAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 154
A + A++P I+ A+ KAT AD N++ NN AGQ +FH H+H++PR A
Sbjct: 93 ANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFA 141
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
++C+FCKII G+ K+YE + L LD + ++ GH+L++PK H + A P + + +
Sbjct: 9 DNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHI 68
Query: 109 CAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD----CLWTSESL 164
+ VP I+NAI + FNLL NNG AGQ +FH H+H+IPR + +W S
Sbjct: 69 FSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQN 128
Query: 165 RRRPLKIDQETSQLADQVR 183
+ S +A+ V+
Sbjct: 129 EYTXENLQNIASTIANSVK 147
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
C FC II E +YE + ILD P+SLGH+L++PK HF +A +
Sbjct: 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAK 60
Query: 111 KVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLK 170
V L+S I A AD LL N G +AGQVIFH H+HIIP D +S + R +
Sbjct: 61 VVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFKSFKPRKEQ 120
Query: 171 IDQETSQLADQVREKLSNI 189
+ L +RE + N+
Sbjct: 121 EKEYYELLQKIIRESIENL 139
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
+C+FCKII G+ P+ K+YE + L LD + ++ GH+L++PK+H + +
Sbjct: 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 65
Query: 110 AKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPR----KAHDCLWTSESLR 165
VP I+ AI + N L NNG AGQ +FH H+HIIPR +W + +
Sbjct: 66 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADD 125
Query: 166 RRPLKIDQETSQLADQV 182
+P + +S +A ++
Sbjct: 126 YKPEDLQNISSSIAKRL 142
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
+C+FCKII+G+ P K+ E L +D NPLS GH L++PK H SCL A +
Sbjct: 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71
Query: 110 AKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPL 169
+ S A+ + +N+L NNG+ A Q + H H HIIP+ T E + L
Sbjct: 72 VLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPK-------TDE---KTGL 121
Query: 170 KIDQETSQLA-DQVREKLSNICECSSK 195
KI +T ++A D++ E E +K
Sbjct: 122 KIGWDTVKVASDELAEDAKRYSEAIAK 148
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 35 AQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVP-KSH 93
AQ + S + ++N+ +F K+IR E P+V++YE D + +D P + GH+L++P K
Sbjct: 14 AQTQGPGSMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGS 73
Query: 94 FSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPR 152
+ LDA ++ + A V I+ A+ KA AD ++ N AA+ Q ++H H HIIPR
Sbjct: 74 RNLLDADTETLFPVIKA-VQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPR 131
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
DC+FCKI GE P+ K+YE D L D NP++ H L+VPK H+ L P + +
Sbjct: 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEM-DIV 63
Query: 110 AKVPLISNAIM--KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 153
+ + ++ N I K D F ++ N G+ GQ + H H HI+ K
Sbjct: 64 SHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGK 109
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 105
G C+FC + R A +YE D ++D PLS GH L++PK+H L P +
Sbjct: 3 GSMEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEEL 60
Query: 106 AAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD----CLWTS 161
+ + + +++ + +N+L NNG Q +FH H H+IP + D W +
Sbjct: 61 SGVLDTI----RHLVQKFGFERYNILQNNGNH--QEVFHVHFHVIPFVSADERLMINWKA 114
Query: 162 ESLRRRPLKIDQETSQLADQVREKLS 187
+S+ D+E S++ ++ R ++S
Sbjct: 115 KSVS------DKEYSEMVEEARLRVS 134
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S + A + + +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 109 CAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+ + A + ++VN G+ GQ ++H H+H++
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
+CVFCKII+ E P+ YE + + I D NP + H LI+PK H + + S A +
Sbjct: 36 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINES-NAQIL 94
Query: 110 AKVPLISNAIMK--ATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+ +N + + + L+ N G AAGQ +FH H H++
Sbjct: 95 IDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLL 137
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S + AA
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHIS-------QISAAE 67
Query: 109 CAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 150
A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 68 DADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
D +F KIIR E PA ++E D CL D +P + H L++PK H S + AA
Sbjct: 4 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHIS-------QISAAE 56
Query: 109 CAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 150
A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 57 DADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 105
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
D +F KIIR E PA ++E D L D +P + H L++PK H S + A + + +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 109 CAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+ + A + ++VN G+ GQ ++H H+H++
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
+ C+FCKI + + P+ +YE D D NP++ H L++PK H + L+ A
Sbjct: 7 DSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEE-NEAF 65
Query: 109 CAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 153
KV + I K + + ++ N G AGQ + H H HI+ K
Sbjct: 66 IGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGK 110
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
D +F KIIR E PA ++E D L D +P + H L++PK H S + AA
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHIS-------QISAAE 67
Query: 109 CAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 150
A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 68 DADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS----- 103
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 74
Query: 104 ----VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 75 GHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS----- 103
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 74
Query: 104 ----VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 75 GHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS----- 103
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 14 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 73
Query: 104 ----VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 74 GHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 115
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS----- 103
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 17 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 76
Query: 104 ----VVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 77 GHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 118
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
+F KII E P +YE D + L P++ GH+L+VP+ + +
Sbjct: 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMG 66
Query: 111 KVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP-RKAHDCLWTS-------E 162
LI A+ KA + L++ AG + H H+H+ P R D + + E
Sbjct: 67 VSQLIGKAVCKAFRTERSGLII-----AGLEVPHLHVHVFPTRSLSDFGFANVDRNPSPE 121
Query: 163 SLRRRPLKIDQETSQLA 179
SL KI +QLA
Sbjct: 122 SLDEAQAKIKAALAQLA 138
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 61 SPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 120
P+V + + +++ P+ GH L+ P P VA + + +
Sbjct: 11 KPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVE 70
Query: 121 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 156
K S + +G AGQ + H H+H++PRKA D
Sbjct: 71 KHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 106
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 61 SPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 120
P+V + + +++ P+ GH L+ P P VA + + +
Sbjct: 11 KPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVE 70
Query: 121 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 156
K S +G AGQ + H H+H++PRKA D
Sbjct: 71 KHFHGTSLTFSXQDGPEAGQTVKHVHVHVLPRKAGD 106
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 61 SPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 120
P+V + + +++ P+ GH L+ P P VA + + +
Sbjct: 11 KPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVE 70
Query: 121 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 156
K S + +G AGQ + H ++H++PRKA D
Sbjct: 71 KHFHGTSLTFSMQDGPEAGQTVKHVNVHVLPRKAGD 106
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 55 KIIRGESPAVKLYEYDT--CLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKV 112
K R PA ++ Y T ++ P++ GH L+ PK L + A +
Sbjct: 300 KFARFNIPADHIF-YSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVA 358
Query: 113 PLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 156
+ + K + S + V +G AGQ + H HIHI+PR+A D
Sbjct: 359 KKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGD 402
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
+ +F KIIR E P+ +Y+ D D +P + H LI+P ++ A+
Sbjct: 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 110 AKVPLISN-AIMKATDADSFNLLVNNGAAAGQVIFHTHIHII------PRKAHDCL 158
+ + + A + D + L++N GQ ++H H+H++ P AH L
Sbjct: 64 RMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHKGL 119
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 72 CLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLL 131
+L+ P + GH ++VP S L+ A + A I + FN+
Sbjct: 93 VYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVG 152
Query: 132 VNNG-AAAGQVIFHTHIHIIPRKAHDC 157
+N G +A G + H H+H++PR D
Sbjct: 153 LNLGTSAGGSLAEHLHVHVVPRWGGDA 179
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
+ +F KIIR E P+ +Y+ D D +P + H LI+P ++ A+
Sbjct: 3 EETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQAL 62
Query: 109 CAKVPLISN-AIMKATDADSFNLLVNNGAAAGQVIFHTHIHII------PRKAHDCL 158
+ + + A + D + L++N GQ ++H +H++ P AH L
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPLGPMLAHKGL 119
>pdb|3I24|A Chain A, Crystal Structure Of A Hit Family Hydrolase Protein From
Vibrio Fischeri. Northeast Structural Genomics
Consortium Target Id Vfr176
pdb|3I24|B Chain B, Crystal Structure Of A Hit Family Hydrolase Protein From
Vibrio Fischeri. Northeast Structural Genomics
Consortium Target Id Vfr176
Length = 149
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 126 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETS--QLADQVR 183
D+F+ N A G ++ HIH I R D W I ++S QL D +R
Sbjct: 71 DNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLR 130
Query: 184 EKLSNI 189
+KLSNI
Sbjct: 131 DKLSNI 136
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 73 LCILD--TNPLSLG-----------HSLIVPKSHFSCLDATPPSVVAAMCAKVPLI 115
L ILD T+P +LG H++IVPK + L+AT V VPLI
Sbjct: 107 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLI 162
>pdb|2OIK|A Chain A, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|B Chain B, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|C Chain C, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|D Chain D, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
Length = 154
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 15/137 (10%)
Query: 45 SGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 104
S H+N C C GE L++ C + N G ++ H P+
Sbjct: 7 SFHKN-CELCTTAGGEI----LWQDALCRVVHVENQDYPGFCRVILNRHVKEXSDLRPAE 61
Query: 105 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD-----CLW 159
+ V + A+ + D NL A+ G H H H+IPR D +W
Sbjct: 62 RDHLXLVVFAVEEAVREVXRPDKINL-----ASLGNXTPHVHWHVIPRFKRDRHFPNSVW 116
Query: 160 TSESLRRRPLKIDQETS 176
P +DQ ++
Sbjct: 117 GETKRESLPQALDQGST 133
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 114 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 147
+I N I D+ F ++ G AG ++H H+
Sbjct: 216 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 249
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 114 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 147
+I N I D+ F ++ G AG ++H H+
Sbjct: 219 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 252
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 114 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 147
+I N I D+ F ++ G AG ++H H+
Sbjct: 220 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 253
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 114 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 147
+I N I D+ F ++ G AG ++H H+
Sbjct: 257 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 290
>pdb|3VQ1|C Chain C, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|D Chain D, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|C Chain C, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|D Chain D, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 144
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
GH++D FC+ ++GE+ + P S ++ PK H+ C+
Sbjct: 81 GHDDDYSFCRALKGETVNTSI-------------PFSF-EGILFPKGHYRCV 118
>pdb|2Z64|C Chain C, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 135
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
GH++D FC+ ++GE+ + P S ++ PK H+ C+
Sbjct: 77 GHDDDYSFCRALKGETVNTSI-------------PFSF-EGILFPKGHYRCV 114
>pdb|1MKF|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1MKF|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1ML0|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The P8a Variant Of
Cc-Chemokine Mcp-1
pdb|2NYZ|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NYZ|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NZ1|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|X Chain X, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
Length = 382
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 154 AHDCLWTSESLRRRPLKIDQETSQLADQVR 183
+HD +WTS S + P+++ + SQ QVR
Sbjct: 324 SHDGVWTSTSSEQCPIRLVEGQSQNVLQVR 353
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 114 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 147
+I N I D+ F ++ G AG ++H H+
Sbjct: 222 VIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHV 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,437,678
Number of Sequences: 62578
Number of extensions: 185816
Number of successful extensions: 451
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 45
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)