Query 028878
Match_columns 202
No_of_seqs 179 out of 1276
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0537 Hit Diadenosine tetrap 100.0 1.6E-35 3.5E-40 231.2 15.5 137 49-186 1-137 (138)
2 cd01275 FHIT FHIT (fragile his 100.0 6.9E-31 1.5E-35 201.4 13.4 111 51-161 1-112 (126)
3 cd01277 HINT_subgroup HINT (hi 100.0 8.5E-31 1.8E-35 193.1 12.9 103 50-152 1-103 (103)
4 PRK10687 purine nucleoside pho 100.0 6.4E-31 1.4E-35 200.5 11.9 107 48-154 2-109 (119)
5 cd01276 PKCI_related Protein K 100.0 3.5E-29 7.5E-34 185.3 11.3 102 50-152 1-104 (104)
6 PF01230 HIT: HIT domain; Int 99.9 1.8E-27 3.9E-32 174.7 10.3 96 59-154 2-97 (98)
7 KOG3275 Zinc-binding protein o 99.9 4.5E-27 9.8E-32 175.1 10.9 108 48-161 15-126 (127)
8 PRK11720 galactose-1-phosphate 99.9 6.3E-26 1.4E-30 200.9 12.2 141 44-185 189-338 (346)
9 cd01278 aprataxin_related apra 99.9 1.5E-25 3.2E-30 166.1 12.0 99 50-150 1-103 (104)
10 cd00608 GalT Galactose-1-phosp 99.9 8E-26 1.7E-30 199.2 12.2 140 45-184 180-328 (329)
11 TIGR00209 galT_1 galactose-1-p 99.9 9.9E-26 2.2E-30 199.7 12.1 141 44-185 189-338 (347)
12 PLN02643 ADP-glucose phosphory 99.9 2.5E-24 5.5E-29 190.1 12.8 134 44-184 193-331 (336)
13 cd00468 HIT_like HIT family: H 99.9 2.3E-24 5E-29 153.5 10.1 86 66-151 1-86 (86)
14 KOG3379 Diadenosine polyphosph 99.9 6.9E-24 1.5E-28 162.1 13.2 124 62-186 16-150 (150)
15 PF11969 DcpS_C: Scavenger mRN 99.8 2.7E-18 5.9E-23 130.3 8.1 100 50-153 1-105 (116)
16 PF02744 GalP_UDP_tr_C: Galact 99.7 2E-17 4.3E-22 133.0 7.4 140 49-189 13-160 (166)
17 COG1085 GalT Galactose-1-phosp 99.7 1.9E-16 4E-21 138.9 10.0 147 44-190 180-334 (338)
18 KOG4359 Protein kinase C inhib 99.6 2.4E-14 5.2E-19 110.2 9.6 115 30-151 16-135 (166)
19 KOG2958 Galactose-1-phosphate 99.4 3.5E-13 7.6E-18 115.2 7.7 142 43-186 193-346 (354)
20 PF04677 CwfJ_C_1: Protein sim 99.3 1.2E-10 2.6E-15 89.1 13.0 105 43-153 5-109 (121)
21 KOG2476 Uncharacterized conser 98.7 1.5E-07 3.2E-12 85.4 11.6 103 46-154 316-418 (528)
22 KOG0562 Predicted hydrolase (H 98.1 1.8E-06 4E-11 68.7 2.9 87 62-153 14-106 (184)
23 KOG2477 Uncharacterized conser 97.7 0.00022 4.8E-09 65.8 8.9 106 46-155 404-510 (628)
24 cd00608 GalT Galactose-1-phosp 97.5 0.00062 1.4E-08 60.2 9.3 66 85-150 95-160 (329)
25 KOG3969 Uncharacterized conser 97.4 0.0029 6.3E-08 54.5 11.2 89 62-154 159-258 (310)
26 PLN02643 ADP-glucose phosphory 97.4 0.0016 3.5E-08 57.9 10.1 67 84-150 108-174 (336)
27 PLN03103 GDP-L-galactose-hexos 97.2 0.0014 3E-08 59.4 7.6 73 68-151 167-241 (403)
28 PRK11720 galactose-1-phosphate 97.0 0.0047 1E-07 55.2 9.5 65 84-150 106-170 (346)
29 COG1085 GalT Galactose-1-phosp 97.0 0.0043 9.4E-08 55.1 9.0 68 83-150 94-161 (338)
30 TIGR00209 galT_1 galactose-1-p 96.9 0.011 2.5E-07 52.8 10.8 65 84-150 106-170 (347)
31 COG4360 APA2 ATP adenylyltrans 96.5 0.0035 7.5E-08 53.2 4.2 73 69-152 91-163 (298)
32 PRK05471 CDP-diacylglycerol py 96.2 0.025 5.3E-07 48.4 7.8 83 63-149 55-143 (252)
33 TIGR00672 cdh CDP-diacylglycer 96.2 0.023 5E-07 48.5 7.4 83 63-149 54-142 (250)
34 KOG2720 Predicted hydrolase (H 95.6 0.014 3.1E-07 51.9 4.0 69 73-150 169-237 (431)
35 PF02611 CDH: CDP-diacylglycer 95.5 0.035 7.6E-07 46.7 5.9 82 65-150 28-115 (222)
36 COG2134 Cdh CDP-diacylglycerol 94.5 0.19 4.1E-06 42.0 7.3 84 63-150 55-144 (252)
37 COG5075 Uncharacterized conser 92.9 0.24 5.2E-06 42.3 5.4 89 61-153 153-252 (305)
38 PF01087 GalP_UDP_transf: Gala 91.1 0.56 1.2E-05 38.0 5.5 67 85-151 112-178 (183)
39 PF11296 DUF3097: Protein of u 89.2 0.23 5.1E-06 42.3 1.9 16 3-18 156-171 (275)
40 PF13395 HNH_4: HNH endonuclea 87.5 0.37 8E-06 31.3 1.6 30 10-39 18-49 (54)
41 PF01844 HNH: HNH endonuclease 84.1 0.68 1.5E-05 28.4 1.5 31 8-38 12-44 (47)
42 PRK11295 hypothetical protein; 80.2 0.93 2E-05 34.2 1.3 31 7-37 39-71 (113)
43 PF01076 Mob_Pre: Plasmid reco 79.4 7.7 0.00017 31.7 6.6 52 98-156 93-145 (196)
44 PRK05270 galactose-1-phosphate 77.5 20 0.00043 33.6 9.2 133 45-191 168-336 (493)
45 TIGR01239 galT_2 galactose-1-p 75.5 23 0.00049 33.2 9.0 131 47-191 167-333 (489)
46 smart00507 HNHc HNH nucleases. 75.0 1.9 4.2E-05 26.2 1.5 27 9-35 23-51 (52)
47 COG3002 Uncharacterized protei 74.1 1.8 3.9E-05 41.9 1.6 79 6-90 562-644 (880)
48 KOG2958 Galactose-1-phosphate 65.6 38 0.00083 30.0 7.8 57 90-149 115-174 (354)
49 PF10058 DUF2296: Predicted in 65.4 2.3 4.9E-05 27.8 0.2 47 11-57 5-53 (54)
50 PF03432 Relaxase: Relaxase/Mo 63.9 13 0.00027 30.7 4.5 36 115-156 77-115 (242)
51 PF14317 YcxB: YcxB-like prote 63.4 16 0.00034 23.0 4.1 37 65-111 24-60 (62)
52 PF15269 zf-C2H2_7: Zinc-finge 60.8 4.8 0.0001 25.5 1.1 22 13-37 8-29 (54)
53 COG4468 GalT Galactose-1-phosp 57.9 1E+02 0.0022 28.5 9.3 134 44-191 169-338 (503)
54 cd00085 HNHc HNH nucleases; HN 57.5 4.1 9E-05 25.2 0.4 29 9-37 25-55 (57)
55 PRK13863 type IV secretion sys 55.2 50 0.0011 30.5 7.0 30 117-152 104-139 (446)
56 TIGR01865 cas_Csn1 CRISPR-asso 48.2 6.2 0.00013 39.3 0.1 31 9-39 601-633 (805)
57 TIGR02768 TraA_Ti Ti-type conj 46.7 95 0.0021 30.7 8.0 54 99-161 95-150 (744)
58 COG5047 SEC23 Vesicle coat com 35.9 2.9E+02 0.0064 27.0 9.0 32 27-58 52-86 (755)
59 PRK13878 conjugal transfer rel 33.8 52 0.0011 32.7 3.9 31 115-151 89-121 (746)
60 TIGR03793 TOMM_pelo TOMM prope 33.8 56 0.0012 22.8 3.1 23 83-108 52-74 (77)
61 PF05280 FlhC: Flagellar trans 32.1 17 0.00037 29.5 0.3 29 30-58 136-164 (175)
62 PRK13889 conjugal transfer rel 31.4 2.1E+02 0.0045 29.6 7.8 57 99-161 95-154 (988)
63 PF14394 DUF4423: Domain of un 30.8 1.1E+02 0.0025 24.4 4.9 51 91-151 119-170 (171)
64 PF02729 OTCace_N: Aspartate/o 30.1 60 0.0013 25.1 3.1 31 92-122 1-31 (142)
65 PF13696 zf-CCHC_2: Zinc knuck 30.1 27 0.00059 20.4 0.8 12 27-38 7-18 (32)
66 PF05741 zf-nanos: Nanos RNA b 29.7 22 0.00047 23.4 0.4 30 10-39 13-44 (55)
67 PF04986 Y2_Tnp: Putative tran 29.6 1.3E+02 0.0028 24.2 5.0 48 140-188 12-66 (183)
68 PF01446 Rep_1: Replication pr 29.6 2.5E+02 0.0055 23.6 7.0 9 142-150 79-87 (233)
69 PF03389 MobA_MobL: MobA/MobL 27.9 2.7E+02 0.0059 23.0 6.8 47 99-154 78-126 (216)
70 PF10070 DUF2309: Uncharacteri 27.4 1.4E+02 0.0031 29.9 5.8 46 6-60 500-545 (788)
71 PLN02921 naphthoate synthase 26.0 1.7E+02 0.0038 25.8 5.6 24 1-24 1-24 (327)
72 smart00538 POP4 A domain found 25.8 1.1E+02 0.0023 22.1 3.5 35 63-101 31-65 (92)
73 PRK12722 transcriptional activ 25.8 36 0.00078 28.0 1.1 29 30-58 136-164 (187)
74 KOG4172 Predicted E3 ubiquitin 25.0 24 0.00051 23.4 -0.0 21 30-55 30-50 (62)
75 PF09899 DUF2126: Putative ami 24.5 2.1E+02 0.0046 28.7 6.2 76 111-187 84-164 (819)
76 PRK12860 transcriptional activ 24.3 39 0.00085 27.8 1.1 29 30-58 136-164 (189)
77 PRK03879 ribonuclease P protei 23.3 1.2E+02 0.0027 22.0 3.5 34 62-100 32-65 (96)
78 TIGR00081 purC phosphoribosyla 23.2 4.2E+02 0.0091 22.5 7.2 93 92-190 137-236 (237)
79 COG4855 Uncharacterized protei 22.8 31 0.00067 23.7 0.2 23 29-55 8-30 (76)
80 KOG2593 Transcription initiati 22.7 28 0.00062 32.1 0.0 32 24-55 124-160 (436)
81 COG4416 Com Mu-like prophage p 22.3 28 0.00061 22.9 -0.1 33 27-59 3-35 (60)
82 COG4031 Predicted metal-bindin 21.8 1.4E+02 0.0031 24.7 3.9 38 84-122 35-72 (227)
83 PRK00398 rpoP DNA-directed RNA 21.5 41 0.00088 20.7 0.5 25 29-55 4-28 (46)
84 PRK00076 recR recombination pr 21.3 50 0.0011 27.3 1.2 66 30-104 55-120 (196)
85 COG5175 MOT2 Transcriptional r 20.8 51 0.0011 29.8 1.2 30 20-56 31-61 (480)
86 PF14279 HNH_5: HNH endonuclea 20.4 49 0.0011 22.7 0.8 26 12-38 15-40 (71)
No 1
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=231.20 Aligned_cols=137 Identities=41% Similarity=0.660 Sum_probs=127.2
Q ss_pred CCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 028878 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSF 128 (202)
Q Consensus 49 ~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ 128 (202)
+.|+||++++++.|..+|||+++++||++.+|.++||+|||||+|+.++.+++++++.+|+..++.+++++++.+++++|
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ 80 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGY 80 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHh
Q 028878 129 NLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKL 186 (202)
Q Consensus 129 ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~~e~~ela~~LR~~l 186 (202)
|+++|+|..+||.|+|+|+|||||+.+|..|+...|....... +++++++++|+++|
T Consensus 81 ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~~~~~~~-~~l~~~~~~i~~~l 137 (138)
T COG0537 81 NIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWGTKVEPN-EELEELAEKIRKAL 137 (138)
T ss_pred EEEEecCcccCcCcceEEEEEcCCcCCCCCcccccccccCCcH-HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999887776532222 67999999999765
No 2
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.97 E-value=6.9e-31 Score=201.39 Aligned_cols=111 Identities=31% Similarity=0.567 Sum_probs=106.7
Q ss_pred ccccchhcCCCC-ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceE
Q 028878 51 CVFCKIIRGESP-AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFN 129 (202)
Q Consensus 51 C~FC~ii~~e~p-~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~n 129 (202)
|+||++++++.+ .++|||++.|+||++.+|.++||+||+||+|+.++.+|+++|+.+|+.+++.+.+++++.+++++||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999999998876 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccceEEEEEEeccCCCCCCcc
Q 028878 130 LLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 130 i~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
+++|+|+.+||+++|+|+|||||+.+|.+|..
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~d~~~~~ 112 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNGDTNFMP 112 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCCCCCCCC
Confidence 99999998999999999999999999988764
No 3
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.97 E-value=8.5e-31 Score=193.15 Aligned_cols=103 Identities=50% Similarity=0.872 Sum_probs=100.5
Q ss_pred CccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceE
Q 028878 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFN 129 (202)
Q Consensus 50 ~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~n 129 (202)
+|+||++++++.+.++|+|+++|+||++.+|.+|||+||+||+|+.++.+|+++|+.+|+.+++++.+++.+.+++++||
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 59999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccceEEEEEEec
Q 028878 130 LLVNNGAAAGQVIFHTHIHIIPR 152 (202)
Q Consensus 130 i~~n~g~~agq~v~HlHiHVIPR 152 (202)
+++|+|+..|++++|+|+||+||
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 99999999999999999999998
No 4
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.97 E-value=6.4e-31 Score=200.50 Aligned_cols=107 Identities=21% Similarity=0.438 Sum_probs=98.8
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHcCCC
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM-KATDAD 126 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~-~~~g~~ 126 (202)
.++|+||+|++++.|..+|||++.++||+|..|.++||+||+||+|+.++.||+++++.+++.+++.+.+.++ ..++++
T Consensus 2 ~~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~ 81 (119)
T PRK10687 2 AEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_pred CCCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999988887776554 346788
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccC
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKA 154 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~ 154 (202)
+||+++|+|+.+||+|+|+|+|||||+.
T Consensus 82 g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 82 GYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred ceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 9999999999999999999999999976
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.96 E-value=3.5e-29 Score=185.31 Aligned_cols=102 Identities=36% Similarity=0.664 Sum_probs=94.6
Q ss_pred CccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCc
Q 028878 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD--ADS 127 (202)
Q Consensus 50 ~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g--~~~ 127 (202)
+|+||++++++.+.++|||++.++||+|.+|.++||+||+||+|+.++.+|+++++.++..+++.+ +++.+.++ +++
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 79 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLGIAEDG 79 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhCCCCCC
Confidence 499999999998999999999999999999999999999999999999999999998898888888 56666666 689
Q ss_pred eEEEEecCCCCCCccceEEEEEEec
Q 028878 128 FNLLVNNGAAAGQVIFHTHIHIIPR 152 (202)
Q Consensus 128 ~ni~~n~g~~agq~v~HlHiHVIPR 152 (202)
||+++|+|+.+||+++|+|+|||+|
T Consensus 80 ~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 80 YRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEEeCCCCCCCceeEEEEEEeCC
Confidence 9999999999999999999999986
No 6
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.95 E-value=1.8e-27 Score=174.69 Aligned_cols=96 Identities=41% Similarity=0.682 Sum_probs=91.3
Q ss_pred CCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 028878 59 GESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAA 138 (202)
Q Consensus 59 ~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~a 138 (202)
++.|..+|||++.++||++..|..+||+||+||+|+.++.+|+++++.+|+.+++.+++++++.+++++||+.+|+|+.+
T Consensus 2 ~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~ 81 (98)
T PF01230_consen 2 GEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAA 81 (98)
T ss_dssp TSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGG
T ss_pred CCCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEEEeccC
Q 028878 139 GQVIFHTHIHIIPRKA 154 (202)
Q Consensus 139 gq~v~HlHiHVIPR~~ 154 (202)
||+++|+|+|||||++
T Consensus 82 gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 82 GQSVPHLHFHVIPRYK 97 (98)
T ss_dssp TSSSSS-EEEEEEEST
T ss_pred cCccCEEEEEEecccC
Confidence 9999999999999985
No 7
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-27 Score=175.09 Aligned_cols=108 Identities=30% Similarity=0.617 Sum_probs=92.4
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL---DATPPSVVAAMCAKVPLISNAIMKATD 124 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l---~dL~~ee~~~l~~~l~~v~~~l~~~~g 124 (202)
+..|+||+|+.++.|..||||++.++||.|..|..|+|+|||||+|++.+ .|.+++.+..++...+++ .+.+|
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~v----ak~~G 90 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKV----AKALG 90 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHH----HHHhC
Confidence 78999999999999999999999999999999999999999999995554 566667776666655544 55567
Q ss_pred CC-ceEEEEecCCCCCCccceEEEEEEeccCCCCCCcc
Q 028878 125 AD-SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 125 ~~-~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
.. +||+++|||+.++|+|+|+|+||+|++. ..||+
T Consensus 91 l~~gYrvv~NnG~~g~QsV~HvH~HvlgGrq--m~WPp 126 (127)
T KOG3275|consen 91 LEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQ--MQWPP 126 (127)
T ss_pred cccceeEEEcCCcccceEEEEEEEEEeCCcc--cCCCC
Confidence 65 5999999999999999999999999554 56875
No 8
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.93 E-value=6.3e-26 Score=200.92 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=116.9
Q ss_pred CCCCCCCccccchhcCCCC--ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028878 44 ESGHENDCVFCKIIRGESP--AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 121 (202)
Q Consensus 44 ~~~~~~~C~FC~ii~~e~p--~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~ 121 (202)
-+...+.|+||+|+++|.+ .++|+|+++|+||+|++|.++||+||+||+|+.+|.+|+++++.+|+.+++.+.+++.+
T Consensus 189 y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~ 268 (346)
T PRK11720 189 YFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDN 268 (346)
T ss_pred HHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999876 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-ceEEEEecCCCCC--CccceEEEEEEeccC---CCCCCccccccCCCCCCC-HHHHHHHHHHHHH
Q 028878 122 ATDAD-SFNLLVNNGAAAG--QVIFHTHIHIIPRKA---HDCLWTSESLRRRPLKID-QETSQLADQVREK 185 (202)
Q Consensus 122 ~~g~~-~~ni~~n~g~~ag--q~v~HlHiHVIPR~~---~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~ 185 (202)
.++.+ .||+++|+++..+ +.++|||+||+||+. +...|..+. ......+. -..|+.|++||++
T Consensus 269 ~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aGf-E~~g~~in~~~PE~aA~~LR~~ 338 (346)
T PRK11720 269 LFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVGY-EMLAETQRDLTAEQAAERLRAV 338 (346)
T ss_pred HhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceeee-ecccCccCCCCHHHHHHHHhhc
Confidence 99765 6999999998754 568999999999965 323343321 11222232 2477889999984
No 9
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.93 E-value=1.5e-25 Score=166.10 Aligned_cols=99 Identities=25% Similarity=0.457 Sum_probs=91.4
Q ss_pred CccccchhcCCC--CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--cCC
Q 028878 50 DCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA--TDA 125 (202)
Q Consensus 50 ~C~FC~ii~~e~--p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~--~g~ 125 (202)
.|+||++++++. +.++||+++.|+||.|++|.++||+||+||+|+.++.+|+++++.+|+.+++.+.+.+.+. +++
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 499999999886 5899999999999999999999999999999999999999999999999999888877775 567
Q ss_pred CceEEEEecCCCCCCccceEEEEEE
Q 028878 126 DSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 126 ~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
++||+++|.++. |+++|+|+|||
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEee
Confidence 899999999875 89999999998
No 10
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.93 E-value=8e-26 Score=199.17 Aligned_cols=140 Identities=15% Similarity=0.182 Sum_probs=117.4
Q ss_pred CCCCCCccccchhcCCCC--ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028878 45 SGHENDCVFCKIIRGESP--AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 122 (202)
Q Consensus 45 ~~~~~~C~FC~ii~~e~p--~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~ 122 (202)
+...+.|+||++++++.+ .+||+||+.|+||+|++|.+|||+||+||+|+.+|.+|+++++.+|+.+++.+.+++.+.
T Consensus 180 ~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~ 259 (329)
T cd00608 180 YEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNL 259 (329)
T ss_pred HHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999865 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceEEEEecCCCCC----CccceEEEEEEeccCCCCC-CccccccCCCCCCC-HHHHHHHHHHHH
Q 028878 123 TD-ADSFNLLVNNGAAAG----QVIFHTHIHIIPRKAHDCL-WTSESLRRRPLKID-QETSQLADQVRE 184 (202)
Q Consensus 123 ~g-~~~~ni~~n~g~~ag----q~v~HlHiHVIPR~~~d~~-~p~~~~~~~~~~~~-~e~~ela~~LR~ 184 (202)
++ ..+||+++|+++..+ +.++|||+||+||+..+.. +..+........+. ...|+.|++||+
T Consensus 260 ~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aGfE~~~g~~in~~~PE~aA~~LR~ 328 (329)
T cd00608 260 FNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAGFELGAGEFINDVTPEQAAARLRE 328 (329)
T ss_pred hCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEEeeccCCCccCCCCHHHHHHHHhc
Confidence 99 568999999988764 6899999999999875542 32221111112233 368999999986
No 11
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.93 E-value=9.9e-26 Score=199.71 Aligned_cols=141 Identities=9% Similarity=0.105 Sum_probs=116.6
Q ss_pred CCCCCCCccccchhcCCC--CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028878 44 ESGHENDCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 121 (202)
Q Consensus 44 ~~~~~~~C~FC~ii~~e~--p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~ 121 (202)
-+..++.|+||+|+++|. +.+||||+++|+||+|++|.++||+||+||+|+.+|.+|+++++.+|+.+++.+.+++.+
T Consensus 189 y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~ 268 (347)
T TIGR00209 189 YFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDN 268 (347)
T ss_pred HHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999986 579999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-ceEEEEecCCCCCC--ccceEEEEEEeccC---CCCCCccccccCCCCCCC-HHHHHHHHHHHHH
Q 028878 122 ATDAD-SFNLLVNNGAAAGQ--VIFHTHIHIIPRKA---HDCLWTSESLRRRPLKID-QETSQLADQVREK 185 (202)
Q Consensus 122 ~~g~~-~~ni~~n~g~~agq--~v~HlHiHVIPR~~---~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~ 185 (202)
.++.+ +||+++|+++..|+ ..+|||+||+||+. +...+..+. ......+. -..|+.|++||+.
T Consensus 269 ~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGf-E~~g~~in~~~PE~aA~~LR~~ 338 (347)
T TIGR00209 269 LFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGY-EMLGETQRDLTAEQAAERLRAL 338 (347)
T ss_pred HhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeeh-hhhcCccCCCCHHHHHHHHHhc
Confidence 99654 89999999998775 56779999999964 222243321 11223333 2478899999987
No 12
>PLN02643 ADP-glucose phosphorylase
Probab=99.91 E-value=2.5e-24 Score=190.10 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=112.1
Q ss_pred CCCCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028878 44 ESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT 123 (202)
Q Consensus 44 ~~~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~ 123 (202)
-++..+.|+||++++++. ||+|+++|+||+|++|.++||+||+||+|+.+|.+|+++++.+|+.+++.+.+++.+.+
T Consensus 193 y~~~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~ 269 (336)
T PLN02643 193 YFEKTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQL 269 (336)
T ss_pred HHHHhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 355578999999999876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCC--CC--ccceEEEEEEeccCCCCCCccccccCCCCCC-CHHHHHHHHHHHH
Q 028878 124 DADSFNLLVNNGAAA--GQ--VIFHTHIHIIPRKAHDCLWTSESLRRRPLKI-DQETSQLADQVRE 184 (202)
Q Consensus 124 g~~~~ni~~n~g~~a--gq--~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~-~~e~~ela~~LR~ 184 (202)
+..+||+++|+++.. ++ ..+|||+||+||.+...+|-.. ....+ +-..|+.|++||+
T Consensus 270 ~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~~aGfElg----~g~~in~~~PE~aA~~LR~ 331 (336)
T PLN02643 270 NDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSGVGGFELG----TGCYINPVFPEDAAKVLRE 331 (336)
T ss_pred CCCCceeeeecCCCccccCcccceEEEEEEecCcCCccceecc----CCCeeCCCCHHHHHHHHHh
Confidence 988999999999973 44 4567777999998764443211 11112 2247789999997
No 13
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.91 E-value=2.3e-24 Score=153.51 Aligned_cols=86 Identities=27% Similarity=0.531 Sum_probs=84.1
Q ss_pred EEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceE
Q 028878 66 LYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHT 145 (202)
Q Consensus 66 V~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~Hl 145 (202)
|||++.++||+|++|.++||+||+||+|+.++.+|+++++.+++.+++++.+++++.+++++||+++|+|+.+||+++|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEe
Q 028878 146 HIHIIP 151 (202)
Q Consensus 146 HiHVIP 151 (202)
|+||||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 14
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.91 E-value=6.9e-24 Score=162.12 Aligned_cols=124 Identities=25% Similarity=0.426 Sum_probs=106.2
Q ss_pred CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028878 62 PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 141 (202)
Q Consensus 62 p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~ 141 (202)
+..|+|++++.+||.+..|+.|||+||+|+|-+..|.||+.+|..+|+..++.+.+.|++.+..+.+|+.+++|+.+||+
T Consensus 16 ~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQT 95 (150)
T KOG3379|consen 16 PDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQT 95 (150)
T ss_pred cceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEeccCCCCCCcc------ccccCC-----CCCCCHHHHHHHHHHHHHh
Q 028878 142 IFHTHIHIIPRKAHDCLWTS------ESLRRR-----PLKIDQETSQLADQVREKL 186 (202)
Q Consensus 142 v~HlHiHVIPR~~~d~~~p~------~~~~~~-----~~~~~~e~~ela~~LR~~l 186 (202)
|+|+|+||+||+.+|-.-.. ..|.+. +.. -+||++-|..||..+
T Consensus 96 VpHvHvHIlPR~~gDf~~Nd~IY~~L~~~~~e~~~r~~Rs-~eEM~eEA~~lr~~~ 150 (150)
T KOG3379|consen 96 VPHVHVHILPRKAGDFGDNDLIYDELDKHEKELEDRKPRS-LEEMAEEAQRLREYF 150 (150)
T ss_pred cceeEEEEccccccccccchHHHHHHHhcccccccCCcch-HHHHHHHHHHHHhhC
Confidence 99999999999998864221 012221 111 146777788888653
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.75 E-value=2.7e-18 Score=130.26 Aligned_cols=100 Identities=28% Similarity=0.525 Sum_probs=77.4
Q ss_pred CccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC----
Q 028878 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKS-HFSCLDATPPSVVAAMCAKVPLISNAIMKATD---- 124 (202)
Q Consensus 50 ~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkr-Hv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g---- 124 (202)
.|+||.|.+++.+..++|+++.|++|.|.+|.++.|+|||||+ |+.++.+|+.+.+.-|..+.....+.+++...
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999999999999999999999999999999999999999999 99999999988776565555555555665552
Q ss_pred CCceEEEEecCCCCCCccceEEEEEEecc
Q 028878 125 ADSFNLLVNNGAAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 125 ~~~~ni~~n~g~~agq~v~HlHiHVIPR~ 153 (202)
...++++++.. ++++|+|+|||...
T Consensus 81 ~~~~~~gfH~~----PS~~HLHlHvi~~~ 105 (116)
T PF11969_consen 81 SDDIRLGFHYP----PSVYHLHLHVISPD 105 (116)
T ss_dssp GGGEEEEEESS-----SSSS-EEEEEETT
T ss_pred hhhhcccccCC----CCcceEEEEEccCC
Confidence 24588888765 48999999999753
No 16
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.71 E-value=2e-17 Score=132.96 Aligned_cols=140 Identities=18% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCccccchhcCCC--CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-
Q 028878 49 NDCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA- 125 (202)
Q Consensus 49 ~~C~FC~ii~~e~--p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~- 125 (202)
+.|+||++++.+. ..|||+++++|++|.+....+|..++|+||+|+.+|.+|+++|..+|+.+++.+.+.+.+.++.
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~ 92 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETS 92 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCC
Confidence 8999999988664 4799999999999999999999999999999999999999999999999999999999999974
Q ss_pred CceEEEEecCCCCCCcc---ceEEEEEEeccCCC-CCCcccc-ccCCCCCCCHHHHHHHHHHHHHhhhh
Q 028878 126 DSFNLLVNNGAAAGQVI---FHTHIHIIPRKAHD-CLWTSES-LRRRPLKIDQETSQLADQVREKLSNI 189 (202)
Q Consensus 126 ~~~ni~~n~g~~agq~v---~HlHiHVIPR~~~d-~~~p~~~-~~~~~~~~~~e~~ela~~LR~~l~~~ 189 (202)
..|++++++.|..+..- +|+|+.+-..++.. +.+-.+. +...+. .|...|+.|.+||.++..+
T Consensus 93 ~pY~m~ihqaP~~~~~~~~~fH~H~e~~~ir~~~i~k~~vG~e~l~~~~-~d~~pE~~a~~Lr~~~~~~ 160 (166)
T PF02744_consen 93 FPYNMGIHQAPVNGEDPEHWFHPHFEPPHIRSENIGKFEVGLEILPGRL-RDETPEQAAALLRNELSDV 160 (166)
T ss_dssp --EEEEEE---SSSS--TT--EEEEE--BESSTTEB----THHHHT-EE-ESS-HHHHHHHHH-TS-SS
T ss_pred CCCchhhhcCCCCcccchhhhhcccccccccccccceeeeeHhhhhhhh-cccCHHHHHHHHhhhhHHH
Confidence 58999999988765432 44444432233332 3333321 111111 1334677778888555543
No 17
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.68 E-value=1.9e-16 Score=138.89 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=117.6
Q ss_pred CCCCCCCccccchhcCCCC--ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028878 44 ESGHENDCVFCKIIRGESP--AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK 121 (202)
Q Consensus 44 ~~~~~~~C~FC~ii~~e~p--~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~ 121 (202)
-+..++.|.||++++.+.. .|+|.++++|+||.++++..|.+++|+||+|+..+.+|++++..+|+.+++.+..++.+
T Consensus 180 y~~~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~ 259 (338)
T COG1085 180 YYEENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDN 259 (338)
T ss_pred HHHhcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhh
Confidence 3446899999999988754 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-ceEEEEecCCCC-CCccceEEEEEEe---ccCCCCCCccccccCCCCCC-CHHHHHHHHHHHHHhhhhh
Q 028878 122 ATDAD-SFNLLVNNGAAA-GQVIFHTHIHIIP---RKAHDCLWTSESLRRRPLKI-DQETSQLADQVREKLSNIC 190 (202)
Q Consensus 122 ~~g~~-~~ni~~n~g~~a-gq~v~HlHiHVIP---R~~~d~~~p~~~~~~~~~~~-~~e~~ela~~LR~~l~~~~ 190 (202)
.++.. .|+++++..+.. .+.-+|+|+|++| |..+-..|..+.-......+ +...|++|++||+++.++.
T Consensus 260 ~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~~~~~pEeaA~~LR~~~~~~~ 334 (338)
T COG1085 260 LFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFIRDVTPEEAAERLRERSAEIH 334 (338)
T ss_pred ccCCCCceeeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceeeccCCHHHHHHHHHHhhhccc
Confidence 99875 799999876653 3456899999999 55544433221101111111 3458999999999987654
No 18
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.56 E-value=2.4e-14 Score=110.20 Aligned_cols=115 Identities=20% Similarity=0.352 Sum_probs=87.8
Q ss_pred chhhhhhccccCCcCCCCCCCccccchhcCCC--CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHH
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAA 107 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~--p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~ 107 (202)
+.++|++.. .....+..|.||+|..... +.....||+.+++|.|++|.+..|.||+||+|+.+..+|+.+.. .
T Consensus 16 si~~c~~~e----~~~~~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V-~ 90 (166)
T KOG4359|consen 16 SVGTCEAAE----KSPEPKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQV-E 90 (166)
T ss_pred EEeeeeccc----cccCCCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhH-H
Confidence 668888773 5677788999999987654 35667899999999999999999999999999999999999876 4
Q ss_pred HHH-HHHHHHHHHHHHcCC--CceEEEEecCCCCCCccceEEEEEEe
Q 028878 108 MCA-KVPLISNAIMKATDA--DSFNLLVNNGAAAGQVIFHTHIHIIP 151 (202)
Q Consensus 108 l~~-~l~~v~~~l~~~~g~--~~~ni~~n~g~~agq~v~HlHiHVIP 151 (202)
|.+ ++..=...+++.... +-..++|+-.| .-+|.|+|+|+|-
T Consensus 91 Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPP--f~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 91 LVENMVTVGKTILERNNFTDFTNVRMGFHLPP--FCSVSHLHLHVIA 135 (166)
T ss_pred HHHHHHHHHHHHHHHhccCCchheeEeccCCC--cceeeeeeEeeec
Confidence 444 443333334444333 33667777655 4689999999983
No 19
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.43 E-value=3.5e-13 Score=115.22 Aligned_cols=142 Identities=14% Similarity=0.180 Sum_probs=107.5
Q ss_pred cCCCCCCCccccchhcCC--CCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028878 43 QESGHENDCVFCKIIRGE--SPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIM 120 (202)
Q Consensus 43 ~~~~~~~~C~FC~ii~~e--~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~ 120 (202)
+-+...+.|.+-+.++-| .+.+||.|+++|+++.++....|+.+|||||||+..|.+|++.+..+|+.+++.+..++.
T Consensus 193 kyfe~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd 272 (354)
T KOG2958|consen 193 KYFEEHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD 272 (354)
T ss_pred HHHHHcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence 356678889994444333 246999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCC-CceEEEEecCCCCC---Cccce-EEEEEEe---ccCCCCCCcccc--ccCCCCCCCHHHHHHHHHHHHHh
Q 028878 121 KATDA-DSFNLLVNNGAAAG---QVIFH-THIHIIP---RKAHDCLWTSES--LRRRPLKIDQETSQLADQVREKL 186 (202)
Q Consensus 121 ~~~g~-~~~ni~~n~g~~ag---q~v~H-lHiHVIP---R~~~d~~~p~~~--~~~~~~~~~~e~~ela~~LR~~l 186 (202)
+.|.. ..|+++++..|..+ ....| +|+|+.| |..+-..|-.+. +.....++ ..|+.|++||+.=
T Consensus 273 nlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyppllrsatV~kF~vG~e~l~epqrdl--tpEqaAk~lreld 346 (354)
T KOG2958|consen 273 NLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLRSATVRKFLVGYEMLAEPQRDL--TPEQAAKRLRELD 346 (354)
T ss_pred HhhccCCccccccccCCcccccccccchhhhhhccccchhhccccceeechhhhcCccccC--CHHHHHHHHHhcc
Confidence 99987 57999998877532 22234 5888776 556555564431 22222222 3678888888653
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.28 E-value=1.2e-10 Score=89.08 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=79.4
Q ss_pred cCCCCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028878 43 QESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 122 (202)
Q Consensus 43 ~~~~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~ 122 (202)
......++|+||--...-....||.-++.+++.++.+|+.+||++|+|-.|+.++.+++++.+.|+.+..+.+.+...+
T Consensus 5 r~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~- 83 (121)
T PF04677_consen 5 RQNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS- 83 (121)
T ss_pred ccCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-
Confidence 3455678999996433334568999999999999999999999999999999999999999998888877666555433
Q ss_pred cCCCceEEEEecCCCCCCccceEEEEEEecc
Q 028878 123 TDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 123 ~g~~~~ni~~n~g~~agq~v~HlHiHVIPR~ 153 (202)
.|.+ . +.+-.. .....|+|+++||--
T Consensus 84 ~~~~-v-vf~E~~---~~~~~H~~iq~vPvp 109 (121)
T PF04677_consen 84 QGKD-V-VFFERV---RKRNPHTHIQCVPVP 109 (121)
T ss_pred cCCC-E-EEEEEe---CCCCcEEEEEEEEcC
Confidence 3432 1 222211 344689999999964
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.5e-07 Score=85.38 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 028878 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA 125 (202)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~ 125 (202)
...+.|+||--...-....||.-+++|++-++.+|++.+|+||||-.|++++..|+.+.+.++.+.-..+ +.+.+..|.
T Consensus 316 ~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal-~~myk~~g~ 394 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAAL-RKMYKKQGK 394 (528)
T ss_pred CCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHH-HHHHHhcCC
Confidence 5678899997544445678999999999999999999999999999999999999977666555444333 222333343
Q ss_pred CceEEEEecCCCCCCccceEEEEEEeccC
Q 028878 126 DSFNLLVNNGAAAGQVIFHTHIHIIPRKA 154 (202)
Q Consensus 126 ~~~ni~~n~g~~agq~v~HlHiHVIPR~~ 154 (202)
+ .+++-. .....-|+|+.+||.-.
T Consensus 395 ~--~vvfE~---~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 395 D--AVVFER---QSYRSVHLQLQVIPVPK 418 (528)
T ss_pred e--EEEEEe---ecccceeeEEEEEeccc
Confidence 3 233311 01224699999999643
No 22
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=98.11 E-value=1.8e-06 Score=68.68 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=61.3
Q ss_pred CccEEEEc-CeEEEEEcCCCCCceEEEEEecC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----ceEEEEecC
Q 028878 62 PAVKLYEY-DTCLCILDTNPLSLGHSLIVPKS-HFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD----SFNLLVNNG 135 (202)
Q Consensus 62 p~~iV~e~-~~~va~~~~~p~~~Gh~LViPkr-Hv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~----~~ni~~n~g 135 (202)
+.+++.++ |.++++.|.+|.+..|+||+||+ -+.++.....+.+ ++...+..+...+...++.. .|++++
T Consensus 14 ~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l-~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~--- 89 (184)
T KOG0562|consen 14 PENVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHL-SLLKEDHAVGPCWVDQLTNEALCNYFRVGF--- 89 (184)
T ss_pred cceeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHh-hHhHHHhhcCchHHHHhcchhhhhheeeee---
Confidence 34555566 89999999999999999999963 3445555544443 55666666665666666544 245555
Q ss_pred CCCCCccceEEEEEEecc
Q 028878 136 AAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 136 ~~agq~v~HlHiHVIPR~ 153 (202)
.++.++.++|+|||...
T Consensus 90 -HavPSM~~LHLHVISkD 106 (184)
T KOG0562|consen 90 -HAVPSMNNLHLHVISKD 106 (184)
T ss_pred -ccCcchhheeEEEeecc
Confidence 56778999999999754
No 23
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00022 Score=65.78 Aligned_cols=106 Identities=19% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCCCCccccchhcCCCCccEEEEcCeEEEEEcC-CCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028878 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDT-NPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD 124 (202)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~-~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g 124 (202)
..-+.|+||--........||.-....++.++. .++..||++|+|-.|..+-..|++++|.++-...+-++..+.. .+
T Consensus 404 ~~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas-~n 482 (628)
T KOG2477|consen 404 HVLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFAS-MN 482 (628)
T ss_pred HHhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHh-cC
Confidence 345789999543333346678777777777765 5578999999999999999999999888777666554433322 23
Q ss_pred CCceEEEEecCCCCCCccceEEEEEEeccCC
Q 028878 125 ADSFNLLVNNGAAAGQVIFHTHIHIIPRKAH 155 (202)
Q Consensus 125 ~~~~ni~~n~g~~agq~v~HlHiHVIPR~~~ 155 (202)
-+- |++-+.+ .-+..+|+-||-||.-+.
T Consensus 483 ~dv--iFyE~a~-~l~rrpH~~IeCIPvpqe 510 (628)
T KOG2477|consen 483 LDV--IFYENAP-SLQRRPHTAIECIPVPQE 510 (628)
T ss_pred CCe--EEEeccC-ccccCCceeEEEeechHH
Confidence 331 2222222 224479999999997653
No 24
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.51 E-value=0.00062 Score=60.25 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=50.2
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 85 HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 85 h~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
.|+|..-+|..+|.+++.+++.+++.....-...|.+.-+..-+.+..|.|+.+|.++.|-|..|+
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~ 160 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIW 160 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeee
Confidence 678889999999999999988888776665555554321222244566889999999999999975
No 25
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0029 Score=54.50 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=64.2
Q ss_pred CccEEEEcC----eEEEEEcC--CCC--CceEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--ceEE
Q 028878 62 PAVKLYEYD----TCLCILDT--NPL--SLGHSLIVPK-SHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD--SFNL 130 (202)
Q Consensus 62 p~~iV~e~~----~~va~~~~--~p~--~~Gh~LViPk-rHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~--~~ni 130 (202)
..+||||+. .|+++.|. .+. -.-|++.|-+ +-+.++-||.++.+.-|..+-.++..++...||.+ ...+
T Consensus 159 ~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrm 238 (310)
T KOG3969|consen 159 DDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRM 238 (310)
T ss_pred ccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEE
Confidence 458888764 46666653 232 3445655555 45899999999998888888888888888888764 4667
Q ss_pred EEecCCCCCCccceEEEEEEeccC
Q 028878 131 LVNNGAAAGQVIFHTHIHIIPRKA 154 (202)
Q Consensus 131 ~~n~g~~agq~v~HlHiHVIPR~~ 154 (202)
.++.- .+.+|+|+||++-.-
T Consensus 239 f~HYq----PSyYHlHVHi~nik~ 258 (310)
T KOG3969|consen 239 FFHYQ----PSYYHLHVHIVNIKH 258 (310)
T ss_pred EEEec----CceEEEEEEEEeccC
Confidence 77543 467999999999543
No 26
>PLN02643 ADP-glucose phosphorylase
Probab=97.37 E-value=0.0016 Score=57.92 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=50.6
Q ss_pred eEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 84 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 84 Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
..|+|..-+|..+|.+++.+++..+..+.+.-...|.+.-+..-+.+.-|.|+.+|.+..|-|-.|+
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~ 174 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQII 174 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeE
Confidence 5678888899999999999998888877665544444332222244566889999999999999986
No 27
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.18 E-value=0.0014 Score=59.41 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=48.7
Q ss_pred EcCeEEEEEcCCCCCceEEEEEecC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceE
Q 028878 68 EYDTCLCILDTNPLSLGHSLIVPKS--HFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHT 145 (202)
Q Consensus 68 e~~~~va~~~~~p~~~Gh~LViPkr--Hv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~Hl 145 (202)
++....++.+..|+.+||+++||+. |.+.. ++.+-+ . ++-.+....+.+.|.+++|. .-|..++.|+
T Consensus 167 ~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~--i~~~~l----~----la~~~a~~~~~p~frvgYNS-lGA~ASvNHL 235 (403)
T PLN03103 167 SNSPNVVAINVSPIEYGHVLLVPRVLDCLPQR--IDPDSF----L----LALYMAAEANNPYFRVGYNS-LGAFATINHL 235 (403)
T ss_pred CCCccEEEEeCCCCccCeEEEcCCcccCCCeE--ecHHHH----H----HHHHHHHhcCCCcEEEEecC-CccccCccee
Confidence 3555689999999999999999875 65544 333322 1 11222333355678888865 4455689999
Q ss_pred EEEEEe
Q 028878 146 HIHIIP 151 (202)
Q Consensus 146 HiHVIP 151 (202)
|||..-
T Consensus 236 HFQa~y 241 (403)
T PLN03103 236 HFQAYY 241 (403)
T ss_pred eeeecc
Confidence 999764
No 28
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=97.04 E-value=0.0047 Score=55.23 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=51.9
Q ss_pred eEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 84 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 84 Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
..|+|..-+|..+|.+|+.+++..+..+.+.-...|.+. ..-+.+.-|.|+.+|.+..|-|-.|+
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~ 170 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIW 170 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeee
Confidence 567888889999999999999988888777766666554 22234566889999999999999975
No 29
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=97.01 E-value=0.0043 Score=55.10 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=54.8
Q ss_pred ceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 83 LGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 83 ~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
...++|-...|-.++.+++.+++.++..+.+...+.|.+.-...-+.+..|.|+.+|.+..|-|..|+
T Consensus 94 ~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~ 161 (338)
T COG1085 94 KSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIV 161 (338)
T ss_pred ceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCccee
Confidence 34467777889999999999999999998888777777654333356677899999999999999975
No 30
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=96.89 E-value=0.011 Score=52.77 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=50.7
Q ss_pred eEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 84 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 84 Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
..|+|-.-+|..+|.+|+.+++..+..+.+.-...|.+ +..-+.+.-|.|..+|.+.+|-|-.|+
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~ 170 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIW 170 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeee
Confidence 46788888999999999999998888877766666652 222234455889999999999999975
No 31
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0035 Score=53.15 Aligned_cols=73 Identities=26% Similarity=0.295 Sum_probs=53.2
Q ss_pred cCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEE
Q 028878 69 YDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIH 148 (202)
Q Consensus 69 ~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiH 148 (202)
++....+++..|+.+.|+|||.++--..=+.|+..++.....++ .+.++ -+.+|.||.+|.+.+|-|+.
T Consensus 91 s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL----------~~ldg-lvFYNsGp~aGaSq~HkHLQ 159 (298)
T COG4360 91 SDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVL----------CGLDG-LVFYNSGPIAGASQDHKHLQ 159 (298)
T ss_pred chhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHH----------hcccc-eEEecCCCCcCcCCCcccee
Confidence 34456788999999999999999755444557766653332222 24444 35678899999999999999
Q ss_pred EEec
Q 028878 149 IIPR 152 (202)
Q Consensus 149 VIPR 152 (202)
++|.
T Consensus 160 i~pm 163 (298)
T COG4360 160 IVPM 163 (298)
T ss_pred Eeec
Confidence 9984
No 32
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=96.19 E-value=0.025 Score=48.35 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=52.6
Q ss_pred ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCC----CceEEEEecCC
Q 028878 63 AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDA--TPPSVVAAMCAKVPLISNAIMKATDA----DSFNLLVNNGA 136 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~d--L~~ee~~~l~~~l~~v~~~l~~~~g~----~~~ni~~n~g~ 136 (202)
-..|.....+++|.| +..+.|.|+||...++-+.+ |-...-..++.........+.+.+|. +.+.+.+|.
T Consensus 55 C~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS-- 130 (252)
T PRK05471 55 CAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINS-- 130 (252)
T ss_pred CeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecC--
Confidence 344555677777774 45677999999999887753 21111123444455555555555553 345666654
Q ss_pred CCCCccceEEEEE
Q 028878 137 AAGQVIFHTHIHI 149 (202)
Q Consensus 137 ~agq~v~HlHiHV 149 (202)
..|.+..|+||||
T Consensus 131 ~~gRSQnQLHIHI 143 (252)
T PRK05471 131 RYGRTQDQLHIHI 143 (252)
T ss_pred CCCccccceeeeh
Confidence 5688999999997
No 33
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=96.15 E-value=0.023 Score=48.49 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=54.8
Q ss_pred ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCC----CceEEEEecCC
Q 028878 63 AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDA--TPPSVVAAMCAKVPLISNAIMKATDA----DSFNLLVNNGA 136 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~d--L~~ee~~~l~~~l~~v~~~l~~~~g~----~~~ni~~n~g~ 136 (202)
-..|.....+++|.|. ..+.|.|+||-..++-+.+ |-...--.++.........+.+.+|. ..+.+.+|.
T Consensus 54 C~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS-- 129 (250)
T TIGR00672 54 CAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINS-- 129 (250)
T ss_pred cceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecC--
Confidence 3445557788888877 5677999999999887753 21111233444555555566666653 235666664
Q ss_pred CCCCccceEEEEE
Q 028878 137 AAGQVIFHTHIHI 149 (202)
Q Consensus 137 ~agq~v~HlHiHV 149 (202)
..|.+..|+||||
T Consensus 130 ~~gRSQnQLHIHI 142 (250)
T TIGR00672 130 RTGRSQNHFHIHI 142 (250)
T ss_pred CCCcccccceeeH
Confidence 5688999999997
No 34
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=95.60 E-value=0.014 Score=51.85 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=42.4
Q ss_pred EEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 73 LCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 73 va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
+|..+..|+..||+||||+----.-.-++-+.+ .++-.+......+.|.+++|. .-+..+|.|+|+|..
T Consensus 169 vvaIN~sPie~~H~LiiP~V~kc~pQrit~~al--------~lav~~m~~~dd~~frlgyNS-lga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRVLKCLPQRITHKAL--------LLAVTMMAEADDPYFRLGYNS-LGAFASVNHLHFHAY 237 (431)
T ss_pred eEEEecCccccCcEEEecchhccCcceeeHHHH--------HHHHHHHHhcCCchhheeccc-chhhhhhhhhhhhhh
Confidence 777888999999999999854322222333221 122223333344457777764 234568999999964
No 35
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=95.52 E-value=0.035 Score=46.69 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=38.8
Q ss_pred EEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 028878 65 KLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT------PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAA 138 (202)
Q Consensus 65 iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL------~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~a 138 (202)
.|-....++++.| +..+.|+|+||..-++-+.+- ++.-+..-+..=..|.+++.+.+..+.+.+.+|. ..
T Consensus 28 ~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS--~~ 103 (222)
T PF02611_consen 28 QVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINS--QY 103 (222)
T ss_dssp EEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB---GG
T ss_pred EEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecC--cc
Confidence 3444666777775 455789999999998877542 2233333232222344444443333457777765 45
Q ss_pred CCccceEEEEEE
Q 028878 139 GQVIFHTHIHII 150 (202)
Q Consensus 139 gq~v~HlHiHVI 150 (202)
|.+..||||||=
T Consensus 104 gRsQdQLHIHis 115 (222)
T PF02611_consen 104 GRSQDQLHIHIS 115 (222)
T ss_dssp G-S--S--EEEE
T ss_pred CccccceEeEhh
Confidence 888899999984
No 36
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=94.50 E-value=0.19 Score=41.96 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=49.4
Q ss_pred ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCC----ceEEEEecCC
Q 028878 63 AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDA--TPPSVVAAMCAKVPLISNAIMKATDAD----SFNLLVNNGA 136 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~d--L~~ee~~~l~~~l~~v~~~l~~~~g~~----~~ni~~n~g~ 136 (202)
-..|-+...++++.+..- |...|++|--++.-+.+ |-+..--.++...+.....+.+.+|.+ ++.+.+| +
T Consensus 55 CaeV~~~AG~av~Kd~~g--PlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN--s 130 (252)
T COG2134 55 CAEVKPQAGYAVLKDRNG--PLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN--S 130 (252)
T ss_pred ceeecCCCceEEEeccCC--CceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec--C
Confidence 344555666666666543 44569999999877643 111111123344445555566666642 3455554 4
Q ss_pred CCCCccceEEEEEE
Q 028878 137 AAGQVIFHTHIHII 150 (202)
Q Consensus 137 ~agq~v~HlHiHVI 150 (202)
..|.+..|+||||-
T Consensus 131 ~~gRtQdqlHIHIS 144 (252)
T COG2134 131 KNGRTQDQLHIHIS 144 (252)
T ss_pred ccCccccceEEEEE
Confidence 56888899999974
No 37
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.24 Score=42.28 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCccEEEEcCeE----EEEEcC--CCC--CceEEE-EEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--ceE
Q 028878 61 SPAVKLYEYDTC----LCILDT--NPL--SLGHSL-IVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD--SFN 129 (202)
Q Consensus 61 ~p~~iV~e~~~~----va~~~~--~p~--~~Gh~L-ViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~--~~n 129 (202)
+..+||||++.. +++.|. .+. ..-|++ |+-+.-+.++-||....+.=+.++-.++...+...|+.+ ...
T Consensus 153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~ 232 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELR 232 (305)
T ss_pred ccceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeE
Confidence 346899988754 445553 232 233444 444557889999998877666666655555555455543 355
Q ss_pred EEEecCCCCCCccceEEEEEEecc
Q 028878 130 LLVNNGAAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 130 i~~n~g~~agq~v~HlHiHVIPR~ 153 (202)
+.++. ..+.+|+|+||+=-.
T Consensus 233 mfvHY----~PsYyhlHvHI~nIk 252 (305)
T COG5075 233 MFVHY----QPSYYHLHVHIVNIK 252 (305)
T ss_pred EEEEe----ccceEEEEEEEEeec
Confidence 55543 346799999998643
No 38
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=91.07 E-value=0.56 Score=38.01 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEEe
Q 028878 85 HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 151 (202)
Q Consensus 85 h~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVIP 151 (202)
.++|-.-+|-.+|.+|+.++...++.+...-...|.+.-.+.-+.++-|.|..+|.+..|-|-.|+-
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 6677777898999999999887777765544444433222222334557899999999999999874
No 39
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=89.21 E-value=0.23 Score=42.27 Aligned_cols=16 Identities=56% Similarity=0.926 Sum_probs=14.7
Q ss_pred CCcceeeEEeccccCC
Q 028878 3 TPKRRLAVLSSHLLPT 18 (202)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (202)
+|+|||+||+|||.|-
T Consensus 156 ~p~RR~GVLvDHLV~G 171 (275)
T PF11296_consen 156 GPGRRLGVLVDHLVPG 171 (275)
T ss_pred CCCceeEeeeecccCC
Confidence 6999999999999974
No 40
>PF13395 HNH_4: HNH endonuclease
Probab=87.47 E-value=0.37 Score=31.28 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=25.4
Q ss_pred EEeccccCCCCCCCCCCCcc--chhhhhhccc
Q 028878 10 VLSSHLLPTGPAPCSSSSGV--SASFCAQQRL 39 (202)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 39 (202)
..++|++|++..+.++-.|+ .|..|++.++
T Consensus 18 ~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~ 49 (54)
T PF13395_consen 18 YEIDHIIPRSRGGDDSFWNLVLCCKECNRSKG 49 (54)
T ss_pred ceeEEEecccccCCCCcchhheECHHHhhccc
Confidence 57899999999998888887 7888988853
No 41
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]. This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.
Probab=84.07 E-value=0.68 Score=28.42 Aligned_cols=31 Identities=10% Similarity=0.281 Sum_probs=23.0
Q ss_pred eeEEeccccCCCCCCCCCCCcc--chhhhhhcc
Q 028878 8 LAVLSSHLLPTGPAPCSSSSGV--SASFCAQQR 38 (202)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 38 (202)
..+.++|++|...++..+..|+ +|..|.+.+
T Consensus 12 ~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k 44 (47)
T PF01844_consen 12 ESLHVHHIIPRSKGGKNDLENLILLCPSCHRKK 44 (47)
T ss_dssp -GEEEEESS-TTTT---STTTEEEEEHHHHHHH
T ss_pred cceEeECcCchhcCCCCCHHHHHHHhHHHHHHh
Confidence 4688999999999888888888 999998874
No 42
>PRK11295 hypothetical protein; Provisional
Probab=80.23 E-value=0.93 Score=34.24 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=25.0
Q ss_pred eeeEEeccccCCCCCCCCCCCcc--chhhhhhc
Q 028878 7 RLAVLSSHLLPTGPAPCSSSSGV--SASFCAQQ 37 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 37 (202)
..|+.|+|++|-.+..+++.+|+ +|..|-..
T Consensus 39 ~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~ 71 (113)
T PRK11295 39 LRELTVHHIDHDHDNNPEDGSNWELLCLYCHDH 71 (113)
T ss_pred CCCceeeccCCCCCCCCCchhHHHHHhHHHHhH
Confidence 45889999999777766788888 99999655
No 43
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=79.41 E-value=7.7 Score=31.69 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCc-eEEEEecCCCCCCccceEEEEEEeccCCC
Q 028878 98 DATPPSVVAAMCAKVPLISNAIMKATDADS-FNLLVNNGAAAGQVIFHTHIHIIPRKAHD 156 (202)
Q Consensus 98 ~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~-~ni~~n~g~~agq~v~HlHiHVIPR~~~d 156 (202)
.+++.++..++ +......+.+.+|.+. ++.+++.. .+.||+|+-+||...+.
T Consensus 93 ~~~~~e~~~~~---~~~~~~~~~~r~g~~ni~~a~vH~D----E~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 93 NDLDPEQQKRW---FEDSLEWLQERYGNENIVSAVVHLD----ETTPHMHFDVVPIDEDG 145 (196)
T ss_pred cchhhHHHHHH---HHHHHHHHHHHCCchhEEEEEEECC----CCCcceEEEEeeccccc
Confidence 44566654444 4456678888898653 56677654 45799999999997765
No 44
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=77.45 E-value=20 Score=33.61 Aligned_cols=133 Identities=14% Similarity=0.227 Sum_probs=83.0
Q ss_pred CCCCCCccccchhcCCC-----C----ccEE---EEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHH
Q 028878 45 SGHENDCVFCKIIRGES-----P----AVKL---YEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKV 112 (202)
Q Consensus 45 ~~~~~~C~FC~ii~~e~-----p----~~iV---~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l 112 (202)
......|..|....|-. | -||| ..++.|..-...+..+.-|++|+-.+|.+= .++.+.+..|++.+
T Consensus 168 ~s~YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl~~~H~PM--kI~~~tF~rLL~fv 245 (493)
T PRK05270 168 ASSYPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVLSEKHRPM--KISRKTFERLLDFV 245 (493)
T ss_pred cCCCCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEecCccCcc--EecHHHHHHHHHHH
Confidence 34568899998766632 2 2444 578888888888888999999999999872 24555554444433
Q ss_pred HHHHHHHHHHcCCCceEEEEecCC--CCCCccceEEE----EEEeccCCCC-----------------CCccccccCCCC
Q 028878 113 PLISNAIMKATDADSFNLLVNNGA--AAGQVIFHTHI----HIIPRKAHDC-----------------LWTSESLRRRPL 169 (202)
Q Consensus 113 ~~v~~~l~~~~g~~~~ni~~n~g~--~agq~v~HlHi----HVIPR~~~d~-----------------~~p~~~~~~~~~ 169 (202)
. .| +.|-++.|..- .+|.-..|=|+ |.+|--+... .||-..++-...
T Consensus 246 ~--------~f--PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~agivkWPmSviRL~~~ 315 (493)
T PRK05270 246 E--------QF--PHYFIGSNADLPIVGGSILSHDHYQGGRHTFPMAKAPIEEEFTLAGYPDVKAGIVKWPMSVIRLTSK 315 (493)
T ss_pred H--------hC--CccccccCCCCCcccccccccccccCCCcccccccCccceEEecCCCCcceEEEeeCcceEEEeecC
Confidence 2 22 24445544432 24555577777 5677543221 255543321111
Q ss_pred CCC-HHHHHHHHHHHHHhhhhhc
Q 028878 170 KID-QETSQLADQVREKLSNICE 191 (202)
Q Consensus 170 ~~~-~e~~ela~~LR~~l~~~~~ 191 (202)
+ +++.++|+++.+.|.+..+
T Consensus 316 --~~~~l~~~a~~Il~~Wr~YsD 336 (493)
T PRK05270 316 --NKDELIDAADKILEAWRGYSD 336 (493)
T ss_pred --CHHHHHHHHHHHHHHHhCCCc
Confidence 3 4699999999999998776
No 45
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=75.51 E-value=23 Score=33.21 Aligned_cols=131 Identities=16% Similarity=0.226 Sum_probs=81.1
Q ss_pred CCCCccccchhcCCC-----C----ccEE---EEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHH
Q 028878 47 HENDCVFCKIIRGES-----P----AVKL---YEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPL 114 (202)
Q Consensus 47 ~~~~C~FC~ii~~e~-----p----~~iV---~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~ 114 (202)
....|..|....|-. | -||| ..++.|..-...+..+.-|++|+-.+|.+= .++.+.+..|++.+.
T Consensus 167 ~YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H~PM--kI~~~tF~~Ll~fv~- 243 (489)
T TIGR01239 167 SYPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKHEPM--EISKKTFERLLSFLG- 243 (489)
T ss_pred CCCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEecCccCCc--EecHHHHHHHHHHHH-
Confidence 366899998766632 2 2343 578888888888888999999999999872 245555544444332
Q ss_pred HHHHHHHHcCCCceEEEEecCC-C-CCCccceEEE----EEEeccCCCC-----------------CCccccccCCCCCC
Q 028878 115 ISNAIMKATDADSFNLLVNNGA-A-AGQVIFHTHI----HIIPRKAHDC-----------------LWTSESLRRRPLKI 171 (202)
Q Consensus 115 v~~~l~~~~g~~~~ni~~n~g~-~-agq~v~HlHi----HVIPR~~~d~-----------------~~p~~~~~~~~~~~ 171 (202)
.| +.|-++.|..- . +|.-..|=|+ |.+|--.... .||-..++-...
T Consensus 244 -------~f--PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~agivkWPmSviRL~~~-- 312 (489)
T TIGR01239 244 -------KF--PHYFIGSNADLPIVGGSILSHDHYQGGRHDFPMARAEAEEVYELNDYPDVSAGIVKWPMSVLRLQGE-- 312 (489)
T ss_pred -------hC--CccccccCCCCCcccccccccccccCCCcccccccCCcceEEecCCCCcceEEEEeccceEEEeccC--
Confidence 22 23445544332 1 3444477776 4666433221 255543321111
Q ss_pred C-HHHHHHHHHHHHHhhhhhc
Q 028878 172 D-QETSQLADQVREKLSNICE 191 (202)
Q Consensus 172 ~-~e~~ela~~LR~~l~~~~~ 191 (202)
+ +++.++|+++.++|.+..+
T Consensus 313 ~~~~l~~~a~~Il~~Wr~YsD 333 (489)
T TIGR01239 313 DPGELAEAADHIFRTWQTYSD 333 (489)
T ss_pred CHHHHHHHHHHHHHHHhCCCc
Confidence 3 4699999999999998776
No 46
>smart00507 HNHc HNH nucleases.
Probab=74.99 E-value=1.9 Score=26.20 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=20.6
Q ss_pred eEEeccccCCCCCCCCCCCcc--chhhhh
Q 028878 9 AVLSSHLLPTGPAPCSSSSGV--SASFCA 35 (202)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 35 (202)
++.++|+.|....+..+..|+ +|..|.
T Consensus 23 ~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch 51 (52)
T smart00507 23 GLEVDHIIPLSDGGNDDLDNLVLLCPKCH 51 (52)
T ss_pred CeEEEecCChhcCCCCChHhCeecChhhC
Confidence 688999999988776666666 676664
No 47
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.11 E-value=1.8 Score=41.88 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=53.7
Q ss_pred ceeeEEeccccCCCCCCCCCCCccchhhhhhccccCCcCCCCCCCccccchhcC--CC--CccEEEEcCeEEEEEcCCCC
Q 028878 6 RRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRG--ES--PAVKLYEYDTCLCILDTNPL 81 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~--e~--p~~iV~e~~~~va~~~~~p~ 81 (202)
-+|-|++-|=+++---| -+++++|-+|++.+ +-+|-.--|..|+-.+- .. .+.-|-|+..|++-+..-..
T Consensus 562 Ap~Vvl~GHgSqS~NNP--y~aaLdCGACgGaS----g~fNArvla~l~N~peVRq~lke~GI~Ipedt~FaaalHnTTt 635 (880)
T COG3002 562 APLVVLVGHGSQSQNNP--YRAALDCGACGGAS----GGFNARVLAALCNDPEVRQALKEYGISIPEDTVFAAALHNTTT 635 (880)
T ss_pred CceEEEeccccccCCCc--hhhhcccccccCcc----ccccHHHHHHHhCCHHHHHHHHhcCccCCccceeeeccccCch
Confidence 57899999999998887 45999999999985 35655555666652211 11 24456677777777766655
Q ss_pred CceEEEEEe
Q 028878 82 SLGHSLIVP 90 (202)
Q Consensus 82 ~~Gh~LViP 90 (202)
-.-|.+-+|
T Consensus 636 delh~~dv~ 644 (880)
T COG3002 636 DELHWFDVP 644 (880)
T ss_pred hheeeeehh
Confidence 555555544
No 48
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=65.65 E-value=38 Score=29.95 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=36.8
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEE---EEecCCCCCCccceEEEEE
Q 028878 90 PKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNL---LVNNGAAAGQVIFHTHIHI 149 (202)
Q Consensus 90 PkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni---~~n~g~~agq~v~HlHiHV 149 (202)
.-.|--+|.+++..++.++...-+.+...|.+ .+.|++ .-|.|...|.+.+|-|-.+
T Consensus 115 ~Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~---h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 115 SPNHNLTLPLMDVVEIRDVVDAWKKLYNELGQ---HDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHhcc---cCCcceeeeeccCCcccccCCCCcccce
Confidence 33455567888888877666655544444432 344554 4477888899999988653
No 49
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=65.44 E-value=2.3 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=32.9
Q ss_pred EeccccCCCCCCCCCCCccchhhhhhccccC--CcCCCCCCCccccchh
Q 028878 11 LSSHLLPTGPAPCSSSSGVSASFCAQQRLSH--SQESGHENDCVFCKII 57 (202)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~C~FC~ii 57 (202)
++|.|+-.+|+.+..+--+.|..|.+..+-+ +....-.-.|++|...
T Consensus 5 i~d~L~G~d~~~~~~r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~~ 53 (54)
T PF10058_consen 5 ILDVLLGDDPTSPSNRYALICSKCFSHNGLAPKEEFEEIQYRCPYCGAL 53 (54)
T ss_pred HHHHHhCCCCccccCceeEECcccchhhcccccccCCceEEEcCCCCCc
Confidence 3567777888777878888999999985433 3333345569999753
No 50
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=63.92 E-value=13 Score=30.65 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCceE--EEEecCCCCCCccceEEEEEE-eccCCC
Q 028878 115 ISNAIMKATDADSFN--LLVNNGAAAGQVIFHTHIHII-PRKAHD 156 (202)
Q Consensus 115 v~~~l~~~~g~~~~n--i~~n~g~~agq~v~HlHiHVI-PR~~~d 156 (202)
++..+.+.+++..+. ++.+.. -.|.|+||+ +|...+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~~H~D------~~h~H~Hivin~v~~~ 115 (242)
T PF03432_consen 77 IAREFAEEMGPGNHQYVVVVHTD------TDHPHVHIVINRVDLD 115 (242)
T ss_pred HHHHHHHHcCCCCcceEEEECCC------cCeeeeeEEEeecccc
Confidence 334444555664444 444332 479999987 565544
No 51
>PF14317 YcxB: YcxB-like protein
Probab=63.43 E-value=16 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=23.2
Q ss_pred EEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028878 65 KLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAK 111 (202)
Q Consensus 65 iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~ 111 (202)
-|.+++.++++.- .....++|||+-. ++++..++...
T Consensus 24 ~v~e~~~~~~l~~----~~~~~~~iPk~~f------~~~e~~~f~~~ 60 (62)
T PF14317_consen 24 KVVETKDYFYLYL----GKNQAFIIPKRAF------SEEEKEEFREF 60 (62)
T ss_pred EEEEeCCEEEEEE----CCCeEEEEEHHHC------CHhHHHHHHHH
Confidence 4667777766643 4557899999843 35555555544
No 52
>PF15269 zf-C2H2_7: Zinc-finger
Probab=60.83 E-value=4.8 Score=25.52 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.9
Q ss_pred ccccCCCCCCCCCCCccchhhhhhc
Q 028878 13 SHLLPTGPAPCSSSSGVSASFCAQQ 37 (202)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (202)
-|.|||-++-+ -+|-|++|--+
T Consensus 8 phyiprp~gkp---~~ykcfqcpft 29 (54)
T PF15269_consen 8 PHYIPRPPGKP---FKYKCFQCPFT 29 (54)
T ss_pred CCcCCCCCCCC---ccceeecCCcc
Confidence 48999987763 58899988655
No 53
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=57.94 E-value=1e+02 Score=28.50 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCCCCCCccccchhcCC-----CC----cc---EEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028878 44 ESGHENDCVFCKIIRGE-----SP----AV---KLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAK 111 (202)
Q Consensus 44 ~~~~~~~C~FC~ii~~e-----~p----~~---iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~ 111 (202)
.......|..|....|- .| .| +...++.|..-...+..+.-|++|+--+|++ -.++...+..|...
T Consensus 169 ~asnYPkClLC~ENeGf~G~vNhPARqNhRIIp~~l~~e~W~fQySPY~YynEH~I~l~~eH~p--M~Is~~tFerlL~f 246 (503)
T COG4468 169 KASNYPKCLLCKENEGFYGRVNHPARQNHRIIPVELNGEQWGFQYSPYVYYNEHCIILNGEHRP--MKISRKTFERLLSF 246 (503)
T ss_pred cccCCcceeeeecccccccccCCcccccceeEEEEecCceeeEeeccceeecceeEEecCCccc--ceecHHHHHHHHHH
Confidence 44456789999865552 12 23 3467888888888888899999999999986 23455544444333
Q ss_pred HHHHHHHHHHHcCCCceEEEEecCC-C-CCCccceEEE----EEEeccCCCC-----------------CCccccccCCC
Q 028878 112 VPLISNAIMKATDADSFNLLVNNGA-A-AGQVIFHTHI----HIIPRKAHDC-----------------LWTSESLRRRP 168 (202)
Q Consensus 112 l~~v~~~l~~~~g~~~~ni~~n~g~-~-agq~v~HlHi----HVIPR~~~d~-----------------~~p~~~~~~~~ 168 (202)
+. .| ++|-++.|..- . +|.-..|=|. |.+|.-.... .||-.+.+-..
T Consensus 247 ~d--------qf--PhYfiGSNADLPIVGGSILsHDHyQgG~h~FpMakA~~eke~~~~~fp~V~aGiVKWPMSVlRL~s 316 (503)
T COG4468 247 LD--------QF--PHYFIGSNADLPIVGGSILSHDHYQGGRHEFPMAKAELEKEFSFKGFPDVSAGIVKWPMSVLRLQS 316 (503)
T ss_pred HH--------hC--CcccccCCCCCCcccceeccccccccccccccccccchhheeeecCCCccccceeecchhheeecc
Confidence 32 11 34444444321 1 3444567776 5777543221 25443321111
Q ss_pred CCCC-HHHHHHHHHHHHHhhhhhc
Q 028878 169 LKID-QETSQLADQVREKLSNICE 191 (202)
Q Consensus 169 ~~~~-~e~~ela~~LR~~l~~~~~ 191 (202)
.+ .++-.+|+++-++|....+
T Consensus 317 --~nk~~L~~lAd~il~~Wr~YSD 338 (503)
T COG4468 317 --KNKVELIKLADKILKKWREYSD 338 (503)
T ss_pred --CCHHHHHHHHHHHHHHHHHhcc
Confidence 12 3688899999888887544
No 54
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.
Probab=57.55 E-value=4.1 Score=25.16 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=22.8
Q ss_pred eEEeccccCCCCCCCCCCCcc--chhhhhhc
Q 028878 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQ 37 (202)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 37 (202)
.+.++|++|...++..+..|+ +|..|.+.
T Consensus 25 ~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~ 55 (57)
T cd00085 25 GLEVDHIIPLSDGGNNDLDNLVLLCRKCHRK 55 (57)
T ss_pred CceEEeecchhhCCCCchHHhHHHHHHHhhc
Confidence 578999999988777766777 77777664
No 55
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=55.22 E-value=50 Score=30.47 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=17.4
Q ss_pred HHHHHHcCCC----ceE--EEEecCCCCCCccceEEEEEEec
Q 028878 117 NAIMKATDAD----SFN--LLVNNGAAAGQVIFHTHIHIIPR 152 (202)
Q Consensus 117 ~~l~~~~g~~----~~n--i~~n~g~~agq~v~HlHiHVIPR 152 (202)
....+.|+.. .|. ++++.. -.|-|+||+-+
T Consensus 104 efA~E~FgsG~~G~~~dYV~AlH~D------~dHPHVHLvVn 139 (446)
T PRK13863 104 EWAAEMFGSGAGGGRYNYLTAFHID------RDHPHLHVVVN 139 (446)
T ss_pred HHHHHHhCCCCCCCceeEEEEEecC------CCCCeEEEEEE
Confidence 4455667642 344 444432 36889998765
No 56
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=48.17 E-value=6.2 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=25.7
Q ss_pred eEEeccccCCCCCCCCCCCcc--chhhhhhccc
Q 028878 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRL 39 (202)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 39 (202)
.+..+||+|.+.++.++..|+ .|..|++.++
T Consensus 601 ~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~ 633 (805)
T TIGR01865 601 YYEIDHILPQSRSFDDSISNKVLVLASENQEKG 633 (805)
T ss_pred CCceeeecccccCCCCcHHHHHHHhHHHHhhcc
Confidence 477999999999997766776 8888998864
No 57
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=46.74 E-value=95 Score=30.71 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCC--ceEEEEecCCCCCCccceEEEEEEeccCCCCCCcc
Q 028878 99 ATPPSVVAAMCAKVPLISNAIMKATDAD--SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 99 dL~~ee~~~l~~~l~~v~~~l~~~~g~~--~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
+|+.++..+|.+.. +++.+... .+.+.++. .++..||.|+-+--|.-+..+|..
T Consensus 95 El~~~~~~~L~~~f------~~~~~~~~g~~~d~aiH~---~~~~NpHaHim~t~R~~~~~gf~~ 150 (744)
T TIGR02768 95 ELNLEQNIELARRF------VRDHFVEKGMVADWAIHD---DGDGNPHAHLLTTTRPLEENGFGA 150 (744)
T ss_pred hcCHHHHHHHHHHH------HHHHHHhCCCeEEEEEec---CCCCCCEEEEEeeceeeccccCCC
Confidence 67888776554422 23333322 35677775 345679999998888765545543
No 58
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=35.87 E-value=2.9e+02 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred Cccchhh-hhhccc--cCCcCCCCCCCccccchhc
Q 028878 27 SGVSASF-CAQQRL--SHSQESGHENDCVFCKIIR 58 (202)
Q Consensus 27 ~~~~~~~-~~~~~~--~~~~~~~~~~~C~FC~ii~ 58 (202)
+.+.|.+ |++-.- -+-+..+..-.|+||.-.+
T Consensus 52 epv~C~~pC~avlnpyC~id~r~~~W~CpfCnqrn 86 (755)
T COG5047 52 EPVKCTAPCKAVLNPYCHIDERNQSWICPFCNQRN 86 (755)
T ss_pred CCceecccchhhcCcceeeccCCceEecceecCCC
Confidence 4568888 887631 2233555567799998544
No 59
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=33.84 E-value=52 Score=32.67 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCc--eEEEEecCCCCCCccceEEEEEEe
Q 028878 115 ISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIP 151 (202)
Q Consensus 115 v~~~l~~~~g~~~--~ni~~n~g~~agq~v~HlHiHVIP 151 (202)
+...+.+.+|... |-++.|. .-.|+|+||+=
T Consensus 89 I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 89 IEERICAGLGYGEHQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHhCCCCceEEEEEEC------CCCCceeEEEE
Confidence 3334445556544 4445443 24899999985
No 60
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=33.80 E-value=56 Score=22.84 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=18.4
Q ss_pred ceEEEEEecCCCCCCCCCCHHHHHHH
Q 028878 83 LGHSLIVPKSHFSCLDATPPSVVAAM 108 (202)
Q Consensus 83 ~Gh~LViPkrHv~~l~dL~~ee~~~l 108 (202)
.-|.+|+|.+.-. +|+++++..+
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~v 74 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDAV 74 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHHh
Confidence 4478999999876 8899987654
No 61
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=32.10 E-value=17 Score=29.49 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=10.2
Q ss_pred chhhhhhccccCCcCCCCCCCccccchhc
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCKIIR 58 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~ 58 (202)
.|..|+..+-.+.......-.|+||....
T Consensus 136 ~C~~C~~~fv~~~~~~~~~~~Cp~C~~ps 164 (175)
T PF05280_consen 136 PCRRCGGHFVTHAHDPRHSFVCPFCQPPS 164 (175)
T ss_dssp E-TTT--EEEEESS--SS----TT-----
T ss_pred CCCCCCCCeECcCCCCCcCcCCCCCCCcc
Confidence 79999999753333334566899998643
No 62
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=31.38 E-value=2.1e+02 Score=29.58 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCc--eEEEEecCCC-CCCccceEEEEEEeccCCCCCCcc
Q 028878 99 ATPPSVVAAMCAKVPLISNAIMKATDADS--FNLLVNNGAA-AGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 99 dL~~ee~~~l~~~l~~v~~~l~~~~g~~~--~ni~~n~g~~-agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
+|+.++..+|.... +++.+...+ +.+.++.... .|+..+|.|+-+-=|.-+..+|..
T Consensus 95 EL~~eq~~~L~~~f------~~~~~~~~G~~ad~aiH~~~~~dg~~NpHaHim~T~R~~~~~G~g~ 154 (988)
T PRK13889 95 EMTQAQGIELARDF------VQAEFVDRGMIADLNVHWDIGEDGMAKPHAHVMLTMRAVDENGFGA 154 (988)
T ss_pred hcCHHHHHHHHHHH------HHHHHhcCCceEEEEeecccccCCCCCCeEEEEeccCccCCCCCCC
Confidence 78888766655422 233333333 3456664321 345568888887767665555644
No 63
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=30.84 E-value=1.1e+02 Score=24.37 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=35.6
Q ss_pred cCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEEe
Q 028878 91 KSHFSCL-DATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 151 (202)
Q Consensus 91 krHv~~l-~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVIP 151 (202)
.|+++++ ..++++.+..+.+.+....+.+.+....+ .....|+++-++++|
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~----------~~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEED----------KEPDRVYQLNIQLFP 170 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCeEEEEEEEEec
Confidence 4667666 46788888888888887777776654331 123567888888888
No 64
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=30.10 E-value=60 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028878 92 SHFSCLDATPPSVVAAMCAKVPLISNAIMKA 122 (202)
Q Consensus 92 rHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~ 122 (202)
||+-++.||+.+|+..|.+....+.+...+.
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhhhcC
Confidence 6888999999999999999998887777665
No 65
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=30.06 E-value=27 Score=20.39 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=10.4
Q ss_pred Cccchhhhhhcc
Q 028878 27 SGVSASFCAQQR 38 (202)
Q Consensus 27 ~~~~~~~~~~~~ 38 (202)
.+|+|..|++.+
T Consensus 7 ~~Y~C~~C~~~G 18 (32)
T PF13696_consen 7 PGYVCHRCGQKG 18 (32)
T ss_pred CCCEeecCCCCC
Confidence 689999999884
No 66
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=29.69 E-value=22 Score=23.42 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=15.5
Q ss_pred EEecccc--CCCCCCCCCCCccchhhhhhccc
Q 028878 10 VLSSHLL--PTGPAPCSSSSGVSASFCAQQRL 39 (202)
Q Consensus 10 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 39 (202)
+-+||.+ +.|.--||--..|.|..|++++.
T Consensus 13 ~y~sH~lk~~~G~v~CPvLr~y~Cp~CgAtGd 44 (55)
T PF05741_consen 13 VYSSHTLKDPDGRVTCPVLRKYVCPICGATGD 44 (55)
T ss_dssp HHTSB-SB-TTS-B--TTGGG---TTT---GG
T ss_pred eEcccEEECCCCCEeCHHHhcCcCCCCcCcCc
Confidence 4567877 78888888888889999999964
No 67
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=29.65 E-value=1.3e+02 Score=24.22 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=24.9
Q ss_pred CccceEEEEEE-ec--cCCCCCCccc---cccCCCCCCCH-HHHHHHHHHHHHhhh
Q 028878 140 QVIFHTHIHII-PR--KAHDCLWTSE---SLRRRPLKIDQ-ETSQLADQVREKLSN 188 (202)
Q Consensus 140 q~v~HlHiHVI-PR--~~~d~~~p~~---~~~~~~~~~~~-e~~ela~~LR~~l~~ 188 (202)
+-..|.|+|++ |. ...|..|-.. .+... ..+.. -..++.+.|++++.+
T Consensus 12 ~L~~hpHiH~lVt~Ggl~~~~~w~~~~~~~~fp~-k~l~~~fr~k~l~~L~~~~~~ 66 (183)
T PF04986_consen 12 DLNWHPHIHCLVTGGGLDKDGQWKKARKDYFFPV-KALSKVFRGKFLQALRQRYDK 66 (183)
T ss_pred ccccCCeEEEEEecccccccccccccCcccchhh-hhhhHHHHHHHHHHHHHHHHh
Confidence 34589999976 43 2334456431 11111 11222 367777777777443
No 68
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=29.58 E-value=2.5e+02 Score=23.60 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=7.1
Q ss_pred cceEEEEEE
Q 028878 142 IFHTHIHII 150 (202)
Q Consensus 142 v~HlHiHVI 150 (202)
.+|-|+||+
T Consensus 79 ~~HPH~Hvl 87 (233)
T PF01446_consen 79 SWHPHFHVL 87 (233)
T ss_pred eeccceEEE
Confidence 478888876
No 69
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=27.85 E-value=2.7e+02 Score=23.02 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCc--eEEEEecCCCCCCccceEEEEEEeccC
Q 028878 99 ATPPSVVAAMCAKVPLISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIPRKA 154 (202)
Q Consensus 99 dL~~ee~~~l~~~l~~v~~~l~~~~g~~~--~ni~~n~g~~agq~v~HlHiHVIPR~~ 154 (202)
+|+.++..+|.+ ..+.+.+...+ +.+.++.. +...+|+||=+-.|.-
T Consensus 78 EL~~eq~~~L~~------~f~~~~~~~~G~~~d~aIH~d---~~~NpHaHim~t~R~l 126 (216)
T PF03389_consen 78 ELTLEQNIELVR------EFAQENFVDYGMAADVAIHDD---GPRNPHAHIMFTTRPL 126 (216)
T ss_dssp TS-HHHHHHHHH------HHHHHHHTTTT--EEEEEEEE---TTTEEEEEEEE--B--
T ss_pred cCCHHHHHHHHH------HHHHHHhhccceEEEEEEecC---CCCCCEEEEEeecCcc
Confidence 678887655544 33344343333 56777752 3345777776666764
No 70
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.45 E-value=1.4e+02 Score=29.87 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=34.4
Q ss_pred ceeeEEeccccCCCCCCCCCCCccchhhhhhccccCCcCCCCCCCccccchhcCC
Q 028878 6 RRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRGE 60 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e 60 (202)
-||-|++-|=+-+---|= .++|+|-+|+++.+ ..+.=+||.+.|..
T Consensus 500 AplVvl~GHGS~s~NNP~--~aaLDCGACgG~~G-------~~NARv~A~llNdp 545 (788)
T PF10070_consen 500 APLVVLVGHGSSSTNNPH--AAALDCGACGGQSG-------GPNARVLAALLNDP 545 (788)
T ss_pred CCeEEEecCCCCCCCChh--hhhcccccCCCCCC-------CccHHHHHHHhCCH
Confidence 588899999888877774 48999999999953 23445677776663
No 71
>PLN02921 naphthoate synthase
Probab=26.01 E-value=1.7e+02 Score=25.80 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=19.7
Q ss_pred CCCCcceeeEEeccccCCCCCCCC
Q 028878 1 MGTPKRRLAVLSSHLLPTGPAPCS 24 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (202)
|.+-.+||+.++.||.|.....++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (327)
T PLN02921 1 MDAARRRLARVANHLVPSANPASM 24 (327)
T ss_pred CchhhhHHHHHhcccCcccccccc
Confidence 567789999999999987766644
No 72
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=25.83 E-value=1.1e+02 Score=22.11 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=26.9
Q ss_pred ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCC
Q 028878 63 AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 101 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~ 101 (202)
+.+|.|+.+.+++.... +-+.+|||.+.....+++
T Consensus 31 GiVv~ET~nt~~I~t~~----~~~~~IpK~~~vF~f~l~ 65 (92)
T smart00538 31 GIVVDETRNTLKIETKE----GRVKTVPKDGAVFEFELP 65 (92)
T ss_pred EEEEEeeeeEEEEEeCC----CcEEEEECCCeEEEEEEC
Confidence 57999999999998654 568999999965434443
No 73
>PRK12722 transcriptional activator FlhC; Provisional
Probab=25.75 E-value=36 Score=27.97 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=21.5
Q ss_pred chhhhhhccccCCcCCCCCCCccccchhc
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCKIIR 58 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~ 58 (202)
-|..|++.+..+.......-.|+||....
T Consensus 136 ~C~~Cgg~fv~~~~e~~~~f~CplC~~ps 164 (187)
T PRK12722 136 SCNCCGGHFVTHAHDPVGSFVCGLCQPPS 164 (187)
T ss_pred cCCCCCCCeeccccccCCCCcCCCCCCcc
Confidence 69999999764444556677899998643
No 74
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.97 E-value=24 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=16.0
Q ss_pred chhhhhhccccCCcCCCCCCCccccc
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCK 55 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ 55 (202)
.||.|+..- .....+.|+.|+
T Consensus 30 mCy~Cg~rl-----~~~~~g~CPiCR 50 (62)
T KOG4172|consen 30 MCYACGLRL-----KKALHGCCPICR 50 (62)
T ss_pred hHHHHHHHH-----HHccCCcCcchh
Confidence 799999873 223578899997
No 75
>PF09899 DUF2126: Putative amidoligase enzyme (DUF2126); InterPro: IPR018667 This domain is found in bacterial transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown.
Probab=24.51 E-value=2.1e+02 Score=28.68 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCCceEEEEecCC-CCCCccceEEEEEEeccCCCCCCccccccCCCC---CCC-HHHHHHHHHHHHH
Q 028878 111 KVPLISNAIMKATDADSFNLLVNNGA-AAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPL---KID-QETSQLADQVREK 185 (202)
Q Consensus 111 ~l~~v~~~l~~~~g~~~~ni~~n~g~-~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~---~~~-~e~~ela~~LR~~ 185 (202)
....+.+.|++.+.+.++-. +-.|+ ..|...+.|-+.++=|..|...|....+...+. ..+ ++.++++..|-+.
T Consensus 84 ~A~~L~~rLr~r~apggllh-~gQGKWYPGE~LPRWal~lyWR~DG~PlW~~~~LlA~~~~~~~~~~~~A~~F~~~La~~ 162 (819)
T PF09899_consen 84 LADDLIRRLRARFAPGGLLH-YGQGKWYPGEPLPRWALGLYWRKDGEPLWRDPALLADEDKDYGATAEDAERFLAALAER 162 (819)
T ss_pred HHHHHHHHHHHhhcCCceee-eccCCCCCCCCcchhhheeeeccCCccccCCHHHhcCCCCcCCCCHHHHHHHHHHHHHH
Confidence 34456678888888766533 33454 468999999999999999999997765433321 223 3466666666666
Q ss_pred hh
Q 028878 186 LS 187 (202)
Q Consensus 186 l~ 187 (202)
|.
T Consensus 163 LG 164 (819)
T PF09899_consen 163 LG 164 (819)
T ss_pred hC
Confidence 54
No 76
>PRK12860 transcriptional activator FlhC; Provisional
Probab=24.32 E-value=39 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.419 Sum_probs=21.4
Q ss_pred chhhhhhccccCCcCCCCCCCccccchhc
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCKIIR 58 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~ 58 (202)
-|..|++.+..+.......-.|+||....
T Consensus 136 ~C~~Cgg~fv~~~~e~~~~f~CplC~~ps 164 (189)
T PRK12860 136 RCCRCGGKFVTHAHDLRHNFVCGLCQPPS 164 (189)
T ss_pred cCCCCCCCeeccccccCCCCcCCCCCCcc
Confidence 79999999764444555677899998543
No 77
>PRK03879 ribonuclease P protein component 1; Validated
Probab=23.34 E-value=1.2e+02 Score=21.98 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=25.8
Q ss_pred CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCC
Q 028878 62 PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 100 (202)
Q Consensus 62 p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL 100 (202)
.+.+|.|+.+.+++. ..+....|||.+...-.++
T Consensus 32 ~GiVv~ETknt~~I~-----~~~~~~~VPK~~~iF~f~~ 65 (96)
T PRK03879 32 KGRVVDETRNTLVIE-----TDGKEWMVPKDGATFEFEL 65 (96)
T ss_pred eEEEEEeceeEEEEE-----cCCcEEEEeCCCeEEEEEE
Confidence 357999999999998 3446889999996544444
No 78
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes.
Probab=23.15 E-value=4.2e+02 Score=22.47 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEE---EecCCC-CCCccceEEEEEEeccCCCC--CCcccccc
Q 028878 92 SHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLL---VNNGAA-AGQVIFHTHIHIIPRKAHDC--LWTSESLR 165 (202)
Q Consensus 92 rHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~---~n~g~~-agq~v~HlHiHVIPR~~~d~--~~p~~~~~ 165 (202)
.|...+.-++++++.++.+...++.+.+.+.+...+..++ +-.|.. .|+ +-++=-.+.|. .|+...+.
T Consensus 137 ~~~~~~~~~~~~e~~~i~~~a~~v~~~l~~~~~~~gl~LvD~K~EFG~~~~g~------ivL~DEIsPDs~R~w~~~~~~ 210 (237)
T TIGR00081 137 SYAEALGLATEEELERIKELALKVNEVLKKYFDEKGIILVDFKLEFGLDEEGN------LILADEVSPDTCRLWDKETYE 210 (237)
T ss_pred hHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeEcCCCC------EEEEEEEcCcceeecccccCC
Confidence 3343445578888888888888888888777654333221 111211 132 33332223333 47765443
Q ss_pred CCCCCCCHH-HHHHHHHHHHHhhhhh
Q 028878 166 RRPLKIDQE-TSQLADQVREKLSNIC 190 (202)
Q Consensus 166 ~~~~~~~~e-~~ela~~LR~~l~~~~ 190 (202)
..+..+|.+ .++...++.++++.++
T Consensus 211 ~g~p~ldkdv~r~~~~~~~eaY~~i~ 236 (237)
T TIGR00081 211 VGAPKLDKDIFRRTLGKLIEAYETVA 236 (237)
T ss_pred cCCCCCCHHHHHhhHHHHHHHHHHHh
Confidence 223456655 7777788888877654
No 79
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.79 E-value=31 Score=23.73 Aligned_cols=23 Identities=17% Similarity=0.536 Sum_probs=19.2
Q ss_pred cchhhhhhccccCCcCCCCCCCccccc
Q 028878 29 VSASFCAQQRLSHSQESGHENDCVFCK 55 (202)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~C~FC~ 55 (202)
.-||-|+.++ +..+-.+.|+.|.
T Consensus 8 mKCY~C~eeG----KDtdAV~iCIVCG 30 (76)
T COG4855 8 MKCYDCAEEG----KDTDAVGICIVCG 30 (76)
T ss_pred hHHHHHHHhC----CCcccEEEEEEeC
Confidence 4799999997 4677788999997
No 80
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.72 E-value=28 Score=32.13 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCCccchhhhhhcc--ccCCcCCCC---CCCccccc
Q 028878 24 SSSSGVSASFCAQQR--LSHSQESGH---ENDCVFCK 55 (202)
Q Consensus 24 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~C~FC~ 55 (202)
.+++||.|..|...+ ++|-+..+. .=.|.||.
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQLLDNETGEFHCENCG 160 (436)
T ss_pred cccccccCCccccchhhhHHHHhhcccCceEEEecCC
Confidence 467999999999985 344444443 33499997
No 81
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=22.29 E-value=28 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=25.6
Q ss_pred CccchhhhhhccccCCcCCCCCCCccccchhcC
Q 028878 27 SGVSASFCAQQRLSHSQESGHENDCVFCKIIRG 59 (202)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~ 59 (202)
++.-|.+|+-.-|.++...--...|+=|+.++.
T Consensus 3 ~tiRC~~CnKlLa~a~~~~yle~KCPrCK~vN~ 35 (60)
T COG4416 3 QTIRCAKCNKLLAEAEGQAYLEKKCPRCKEVNE 35 (60)
T ss_pred eeeehHHHhHHHHhcccceeeeecCCccceeee
Confidence 456799999887767766666778999997764
No 82
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=21.76 E-value=1.4e+02 Score=24.73 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028878 84 GHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA 122 (202)
Q Consensus 84 Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~ 122 (202)
.-+-|+=.+.+.+|..--+++ ..|-.+..+++..|+..
T Consensus 35 ~~v~~vge~D~~t~~~~gDed-g~lRNl~erlae~i~s~ 72 (227)
T COG4031 35 VFVRIVGERDFETFSIRGDED-GSLRNLYERLAERIYSY 72 (227)
T ss_pred EEEEEeccccceeecccCCCc-chHHHHHHHHHHHHHhc
Confidence 344466666666666533332 36666777777777664
No 83
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=21.53 E-value=41 Score=20.69 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=16.3
Q ss_pred cchhhhhhccccCCcCCCCCCCccccc
Q 028878 29 VSASFCAQQRLSHSQESGHENDCVFCK 55 (202)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~C~FC~ 55 (202)
|.|..|++.--. ........|++|.
T Consensus 4 y~C~~CG~~~~~--~~~~~~~~Cp~CG 28 (46)
T PRK00398 4 YKCARCGREVEL--DEYGTGVRCPYCG 28 (46)
T ss_pred EECCCCCCEEEE--CCCCCceECCCCC
Confidence 679999998310 1222267899997
No 84
>PRK00076 recR recombination protein RecR; Reviewed
Probab=21.28 E-value=50 Score=27.31 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=34.5
Q ss_pred chhhhhhccccCCcCCCCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHH
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 104 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee 104 (202)
.|..|+.-. ..+.|.+|.=...+....-|.|+..=+......-.+.|...|+- -+++-+....+++
T Consensus 55 ~C~~C~~ls--------e~~~C~IC~d~~Rd~~~icVVE~~~Dv~aiE~s~~y~G~YhVL~-G~ispl~gi~p~~ 120 (196)
T PRK00076 55 HCSVCGNLT--------EQDPCEICSDPRRDQSLICVVESPADVLAIERTGEYRGLYHVLG-GLLSPLDGIGPED 120 (196)
T ss_pred cCCCCCCcC--------CCCcCCCCCCCCCCCCEEEEECCHHHHHHHHhhCcCceEEEEec-CCcCCCCCCCccc
Confidence 688887662 35779999743332222334444333333334445666655554 3444455555554
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=20.84 E-value=51 Score=29.78 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=24.0
Q ss_pred CCCCCCCCcc-chhhhhhccccCCcCCCCCCCccccch
Q 028878 20 PAPCSSSSGV-SASFCAQQRLSHSQESGHENDCVFCKI 56 (202)
Q Consensus 20 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~C~FC~i 56 (202)
-.||+ -|| .|.+|--+ +..+-++.|+-|+-
T Consensus 31 f~pc~--cgy~ic~fc~~~-----irq~lngrcpacrr 61 (480)
T COG5175 31 FFPCP--CGYQICQFCYNN-----IRQNLNGRCPACRR 61 (480)
T ss_pred cccCC--cccHHHHHHHHH-----HHhhccCCChHhhh
Confidence 45666 778 99999988 46678999999974
No 86
>PF14279 HNH_5: HNH endonuclease
Probab=20.36 E-value=49 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=21.1
Q ss_pred eccccCCCCCCCCCCCccchhhhhhcc
Q 028878 12 SSHLLPTGPAPCSSSSGVSASFCAQQR 38 (202)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (202)
..|+||-+=++--...+ +|-.|+..-
T Consensus 15 ~EHIIP~sLGG~~~~~~-vC~~CN~~~ 40 (71)
T PF14279_consen 15 EEHIIPESLGGKLKINN-VCDKCNNKF 40 (71)
T ss_pred ccccCchhcCCcccccc-hhHHHhHHH
Confidence 57999999998655555 999999884
Done!