Query 028878
Match_columns 202
No_of_seqs 179 out of 1276
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ksv_A Uncharacterized protein 100.0 3.1E-38 1.1E-42 248.2 13.7 140 47-189 9-149 (149)
2 3imi_A HIT family protein; str 100.0 5E-38 1.7E-42 246.1 12.7 140 47-187 7-147 (147)
3 3l7x_A SMU.412C, putative HIT- 100.0 1.1E-37 3.8E-42 250.7 14.7 163 11-187 10-172 (173)
4 3o0m_A HIT family protein; ssg 100.0 1.2E-37 4E-42 244.5 14.2 141 48-191 4-145 (149)
5 3lb5_A HIT-like protein involv 100.0 5E-37 1.7E-41 244.2 14.2 136 46-186 25-161 (161)
6 1y23_A HIT, histidine triad pr 100.0 2.2E-36 7.6E-41 235.4 10.9 140 47-187 3-143 (145)
7 2eo4_A 150AA long hypothetical 100.0 3.6E-35 1.2E-39 229.9 13.9 137 51-189 1-139 (149)
8 3r6f_A HIT family protein; str 100.0 4E-35 1.4E-39 226.5 8.6 130 47-187 4-134 (135)
9 3p0t_A Uncharacterized protein 100.0 2.2E-34 7.5E-39 222.8 12.2 132 48-189 4-137 (138)
10 3ano_A AP-4-A phosphorylase; d 100.0 2.4E-33 8.2E-38 232.9 11.9 142 47-190 67-210 (218)
11 2oik_A Histidine triad (HIT) p 100.0 5E-32 1.7E-36 213.2 14.2 136 45-189 6-143 (154)
12 3n1s_A HIT-like protein HINT; 100.0 1.7E-32 5.6E-37 207.7 9.2 108 48-155 2-110 (119)
13 3o1c_A Histidine triad nucleot 100.0 2.3E-32 8E-37 208.7 9.0 116 44-161 10-125 (126)
14 3oj7_A Putative histidine tria 100.0 1.4E-31 4.6E-36 201.7 10.6 111 48-161 5-116 (117)
15 4egu_A Histidine triad (HIT) p 100.0 1.7E-31 5.7E-36 201.6 9.2 108 48-156 3-112 (119)
16 1fit_A FragIle histidine prote 100.0 1.3E-30 4.6E-35 203.5 12.7 134 52-187 4-147 (147)
17 1xqu_A HIT family hydrolase; p 100.0 1E-30 3.6E-35 204.9 9.7 112 47-161 33-146 (147)
18 3ohe_A Histidine triad (HIT) p 100.0 3.3E-28 1.1E-32 188.5 14.8 123 62-189 12-136 (137)
19 1ems_A Nitfhit, NIT-fragIle hi 100.0 4.9E-29 1.7E-33 224.6 11.3 135 48-186 296-440 (440)
20 3i24_A HIT family hydrolase; s 100.0 1.2E-27 4.3E-32 187.8 14.5 124 62-190 12-137 (149)
21 1gup_A Galactose-1-phosphate u 99.9 1.4E-27 4.7E-32 210.5 8.4 139 48-187 193-340 (348)
22 3nrd_A Histidine triad (HIT) p 99.9 1.1E-25 3.9E-30 173.8 14.6 119 62-186 14-135 (135)
23 1z84_A Galactose-1-phosphate u 99.9 1.6E-26 5.3E-31 204.0 11.0 132 48-185 213-348 (351)
24 3i4s_A Histidine triad protein 99.9 8.3E-25 2.8E-29 171.7 14.9 120 63-188 18-140 (149)
25 3sp4_A Aprataxin-like protein; 99.5 1.4E-14 4.8E-19 118.5 3.4 90 65-154 23-127 (204)
26 3bl9_A Scavenger mRNA-decappin 98.9 6.5E-09 2.2E-13 89.3 9.1 96 54-153 141-248 (301)
27 1z84_A Galactose-1-phosphate u 98.8 1.2E-08 4E-13 89.7 10.2 104 48-151 60-191 (351)
28 1vlr_A MRNA decapping enzyme; 98.8 9.3E-09 3.2E-13 89.6 8.6 95 55-153 189-295 (350)
29 1gup_A Galactose-1-phosphate u 97.0 0.0021 7E-08 56.1 8.4 64 85-150 107-170 (348)
30 2pof_A CDP-diacylglycerol pyro 96.1 0.0056 1.9E-07 50.4 4.7 82 65-150 33-120 (227)
31 2qgp_A HNH endonuclease; Q39X4 87.3 0.33 1.1E-05 35.3 2.5 31 9-39 49-81 (112)
32 3vg8_G Hypothetical protein TT 59.1 10 0.00034 27.4 3.7 25 125-150 76-100 (116)
33 4ayb_P DNA-directed RNA polyme 47.1 9.1 0.00031 23.5 1.6 29 28-56 3-31 (48)
34 2ns6_A Mobilization protein A; 27.7 97 0.0033 24.0 5.2 47 98-153 80-128 (185)
35 2gmg_A Hypothetical protein PF 25.6 57 0.0019 23.3 3.1 36 29-67 68-103 (105)
36 3cng_A Nudix hydrolase; struct 24.5 81 0.0028 23.6 4.2 65 30-95 5-75 (189)
37 2avu_E Flagellar transcription 24.1 23 0.00079 28.1 0.9 30 30-59 136-165 (192)
38 1ts9_A Ribonuclease P protein 22.2 69 0.0024 22.6 3.0 28 63-95 35-62 (102)
39 2fsq_A ATU0111 protein; alpha- 21.5 3.2E+02 0.011 22.0 8.0 85 81-189 39-125 (243)
40 2nvn_A Hypothetical protein; s 21.0 2.5E+02 0.0084 20.5 6.1 56 63-123 3-59 (122)
41 2elu_A Zinc finger protein 406 20.6 33 0.0011 19.3 0.8 14 43-56 4-17 (37)
42 2rqw_B 24-meric peptide from s 20.5 58 0.002 17.3 1.7 11 14-24 7-17 (26)
43 3hfn_A ASL2047 protein; HFQ, S 20.1 52 0.0018 21.8 1.9 31 62-96 37-67 (72)
No 1
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=100.00 E-value=3.1e-38 Score=248.18 Aligned_cols=140 Identities=33% Similarity=0.548 Sum_probs=129.0
Q ss_pred CCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028878 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD 126 (202)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~ 126 (202)
...+|+||+|++++.|.++|||++.|+||+|++|.++||+||+||+|+.++.+|+++++.+|+.+++++++++.+.++++
T Consensus 9 ~~~~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~ 88 (149)
T 3ksv_A 9 MAANCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSM 88 (149)
T ss_dssp CCTTCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred ccccCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHhhhh
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLSNI 189 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~l~~~ 189 (202)
+||+++|+|+.+||+++|+|+|||||+.+|.+|+. .|.. ..++ +++++++++||++|+++
T Consensus 89 g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~g~~~-~w~~--~~~~~~~l~~~~~~lr~~l~~~ 149 (149)
T 3ksv_A 89 QYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKI-GWDT--VKVASDELAEDAKRYSEAIAKI 149 (149)
T ss_dssp EEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCCC-CCCC--CCCCHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEecCcccCCCCCEEEEEEEecccCCCCccc-CCCC--CCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999988863 4543 2334 57999999999999764
No 2
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=100.00 E-value=5e-38 Score=246.06 Aligned_cols=140 Identities=32% Similarity=0.589 Sum_probs=128.5
Q ss_pred CCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028878 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD 126 (202)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~ 126 (202)
.+++|+||+|++++.|.++|||++.|+||+|++|.+|||+|||||+|+.++.+|+++++.+|+.+++++++++.+.++++
T Consensus 7 ~m~~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~ 86 (147)
T 3imi_A 7 TADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPV 86 (147)
T ss_dssp CGGGCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCS
T ss_pred ccCCCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHhh
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS 187 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~l~ 187 (202)
+||+++|+|+.+||+++|+|+|||||+.+|.+|. ..|...+..++ +++++++++||++|+
T Consensus 87 ~~ni~~n~g~~aGq~v~HlHiHiiPR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~l~ 147 (147)
T 3imi_A 87 GFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFG-AVWKSHQNEYTMENLQNIASTIANSVK 147 (147)
T ss_dssp EEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEE-EEECCCGGGCCHHHHHHHHHHHHHHCC
T ss_pred CEEEEEeCCcccCCCcCEEEEEEeCCccCCCCce-eeccccCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998884 35654433444 579999999999874
No 3
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-37 Score=250.68 Aligned_cols=163 Identities=34% Similarity=0.582 Sum_probs=136.4
Q ss_pred EeccccCCCCCCCCCCCccchhhhhhccccCCcCCCCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEe
Q 028878 11 LSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVP 90 (202)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViP 90 (202)
++|-|.|+++.-.+ +.=+++. ..+.+++|+||+|++++.|.++|||++.|+||+|++|.+|||+||||
T Consensus 10 ~~~~~~~~~~~~~~-------~~~~~~~-----~~~~m~~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIP 77 (173)
T 3l7x_A 10 HSSGLVPRGSHMAS-------MTGGQQM-----GRGSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIP 77 (173)
T ss_dssp ----CCCCCCTTBC-------TTSSBCC-----C-CCCTTCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEE
T ss_pred ccccceehhhhhhh-------hcccccc-----cCCCCCCCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEe
Confidence 45556676666544 3333442 23357889999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCC
Q 028878 91 KSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLK 170 (202)
Q Consensus 91 krHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~ 170 (202)
|+|+.++.+|+++++.+|+.+++++++++.+.+++++||+++|+|+.+||+++|+|+|||||+.+|.+|. ..|...+..
T Consensus 78 krHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~~d~gf~-~~~~~~~~~ 156 (173)
T 3l7x_A 78 KEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFD-IRFVQHEPD 156 (173)
T ss_dssp SSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEEEEECCSGGGTCCSCSCCEEEEEECC-CCSCC-CCCCCCCCC
T ss_pred ccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCcCEEEEEEEecccCCCCcc-cccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988884 346544322
Q ss_pred CCHHHHHHHHHHHHHhh
Q 028878 171 IDQETSQLADQVREKLS 187 (202)
Q Consensus 171 ~~~e~~ela~~LR~~l~ 187 (202)
.+++++++++||++|+
T Consensus 157 -~~~l~~~~~~ir~~L~ 172 (173)
T 3l7x_A 157 -FTRLGQLAEDIQKEIE 172 (173)
T ss_dssp -HHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHhc
Confidence 2679999999999986
No 4
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=100.00 E-value=1.2e-37 Score=244.48 Aligned_cols=141 Identities=36% Similarity=0.645 Sum_probs=126.6
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCC
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA-TDAD 126 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~-~g~~ 126 (202)
+++|+||+|++++.|.++|||+++|+||+|++|.+|||+|||||+|+.++.+|+++++.+|+.+++++.+++++. ++++
T Consensus 4 m~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~ 83 (149)
T 3o0m_A 4 SMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHAD 83 (149)
T ss_dssp TTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred CCCCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHhhhhhc
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICE 191 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~~e~~ela~~LR~~l~~~~~ 191 (202)
+||+++|+|+.+||+++|+|+|||||+.+|..|+...|...+ ++++++++++||++|.+...
T Consensus 84 ~~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~~~~~~~~~~~~---~~~l~~~a~~lr~~l~~~~~ 145 (149)
T 3o0m_A 84 GNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMVMRR---DPDREESGRLLRAALAQLDS 145 (149)
T ss_dssp EEEEECCCSGGGTCCSSSCCEEEEEECTTCCCCC------CC---CTTHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCCccceEEEEEECCccCCCcccccCcccCC---hHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999887764443221 35799999999999987554
No 5
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=100.00 E-value=5e-37 Score=244.20 Aligned_cols=136 Identities=30% Similarity=0.463 Sum_probs=123.3
Q ss_pred CCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 028878 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA 125 (202)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~ 125 (202)
..+++|+||+|++++.|.++|||++.|+||+|++|.++||+|||||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 25 ~~~~~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~ 104 (161)
T 3lb5_A 25 AYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQA 104 (161)
T ss_dssp CCCTTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHh
Q 028878 126 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKL 186 (202)
Q Consensus 126 ~~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~l 186 (202)
++||+++|+|+.+||+++|+|+|||||+.+|..|+.. ....+ +++++++++||++|
T Consensus 105 ~g~ni~~n~g~~aGq~V~HlHiHiiPR~~~d~~~~~~-----~~~~~~~~l~~~~~~ir~~L 161 (161)
T 3lb5_A 105 DGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHN-----NIITPTEILEENAKKIRAAL 161 (161)
T ss_dssp SEEEEEEEESGGGTCCSCSCCEEEEEECTTCCC-----------CCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEEecCcccCCCCCEEEEEEEcccCCCCCCcCc-----ccCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999988641 12233 57999999999875
No 6
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=100.00 E-value=2.2e-36 Score=235.37 Aligned_cols=140 Identities=30% Similarity=0.574 Sum_probs=125.8
Q ss_pred CCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028878 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD 126 (202)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~ 126 (202)
..++|+||++++++.+.++|||++.|+||++++|.++||+||+||+|+.++.+|+++++.+|+.+++++.+++.+.++++
T Consensus 3 ~~~~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~ 82 (145)
T 1y23_A 3 CAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPI 82 (145)
T ss_dssp --CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCS
T ss_pred CCCCCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHhh
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS 187 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~l~ 187 (202)
+||+++|+|+.+||+++|+|+|||||+.+|.+|+. .|......++ +++++++++||++|.
T Consensus 83 ~~ni~~n~g~~~g~~v~HlH~HiiPr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lr~~l~ 143 (145)
T 1y23_A 83 GLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGA-VWKTHADDYKPEDLQNISSSIAKRLA 143 (145)
T ss_dssp EEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE-EECCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCcCCCCCcCEEEEEEEccccCCCCccc-ccCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888763 4532212344 569999999999984
No 7
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-35 Score=229.95 Aligned_cols=137 Identities=38% Similarity=0.591 Sum_probs=124.5
Q ss_pred ccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 028878 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNL 130 (202)
Q Consensus 51 C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni 130 (202)
|+||+|++++.+.++|||++.|+||+|++|.++||+||+||+|+.++.+|+++++.+|+.+++++.+++.+.+++++||+
T Consensus 1 CiFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni 80 (149)
T 2eo4_A 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRL 80 (149)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcCcccccCCCCccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCccceEEEEEEeccCCCC-CCccccccCCCCCCC-HHHHHHHHHHHHHhhhh
Q 028878 131 LVNNGAAAGQVIFHTHIHIIPRKAHDC-LWTSESLRRRPLKID-QETSQLADQVREKLSNI 189 (202)
Q Consensus 131 ~~n~g~~agq~v~HlHiHVIPR~~~d~-~~p~~~~~~~~~~~~-~e~~ela~~LR~~l~~~ 189 (202)
++|+|+.+||+++|+|+|||||+.+|. .|+. .|..... ++ +++++++++||++|.+.
T Consensus 81 ~~n~g~~~gq~v~HlHiHviPr~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~lr~~l~~~ 139 (149)
T 2eo4_A 81 LTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFK-SFKPRKE-QEKEYYELLQKIIRESIENL 139 (149)
T ss_dssp ECCCSGGGTCCSCSCCEEEEEECSSCCCTTSC-CCCTTSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcCCCCCcCEEEEEEECCcCCCCccccc-ccCCCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 5652 3432122 44 56999999999999643
No 8
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4e-35 Score=226.49 Aligned_cols=130 Identities=28% Similarity=0.558 Sum_probs=114.0
Q ss_pred CCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028878 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD 126 (202)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~ 126 (202)
.+++|+||+|++ .+.++|||++.|+||+|++|.++||+||+||+|+.++.+|+++++.+|+.+++++.++ ++++
T Consensus 4 ~~~~C~fC~i~~--~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~----~~~~ 77 (135)
T 3r6f_A 4 SMEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQK----FGFE 77 (135)
T ss_dssp --CCCHHHHHHH--HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHH----HTCC
T ss_pred CCCCCcCccccc--CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHH----hCCC
Confidence 367899999988 6789999999999999999999999999999999999999999999999888776554 5788
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHhh
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS 187 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~-~e~~ela~~LR~~l~ 187 (202)
+||+++|+|+ ||+++|+|+|||||+.+|.+|+. .|... .++ +++++++++||++|.
T Consensus 78 ~~ni~~n~g~--gq~v~HlH~HiiPR~~~d~g~~~-~~~~~--~~~~~~l~~~~~~ir~~l~ 134 (135)
T 3r6f_A 78 RYNILQNNGN--HQEVFHVHFHVIPFVSADERLMI-NWKAK--SVSDKEYSEMVEEARLRVS 134 (135)
T ss_dssp SEEEECCSSS--SCSSSSCCEEEEECCBTTBSCCC-CCCCC--CCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCC--CCCccEEEEEEeccccCCCCcee-cCCCC--CCCHHHHHHHHHHHHHHhc
Confidence 9999999998 99999999999999999988873 56432 334 579999999999985
No 9
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=100.00 E-value=2.2e-34 Score=222.79 Aligned_cols=132 Identities=22% Similarity=0.402 Sum_probs=117.8
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADS 127 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~ 127 (202)
.++|+||+|++++.|.++|||+++|+||+|.+|.++||+|||||+|+.++.+|+++++.+|+.+++++++++.+.+++++
T Consensus 4 ~~~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~ 83 (138)
T 3p0t_A 4 SMASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTER 83 (138)
T ss_dssp CHHHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCccceEEEEEEeccCCCC-CCccccccCCCCCCC-HHHHHHHHHHHHHhhhh
Q 028878 128 FNLLVNNGAAAGQVIFHTHIHIIPRKAHDC-LWTSESLRRRPLKID-QETSQLADQVREKLSNI 189 (202)
Q Consensus 128 ~ni~~n~g~~agq~v~HlHiHVIPR~~~d~-~~p~~~~~~~~~~~~-~e~~ela~~LR~~l~~~ 189 (202)
+|+.. +||+|+|+|+|||||+.+|. .|+ |. ....+ +++++++++||++|.+.
T Consensus 84 ~n~~~-----~gq~v~HlH~HiiPr~~~d~~~~~---~~--~~~~~~~~l~~~~~~l~~~l~~~ 137 (138)
T 3p0t_A 84 SGLII-----AGLEVPHLHVHVFPTRSLSDFGFA---NV--DRNPSPESLDEAQAKIKAALAQL 137 (138)
T ss_dssp EEEEE-----CCSSCSSCCEEEEEESCGGGSSST---TC--CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEE-----CCcccCEEEEEEeccccCCCCccc---CC--CCCCCHHHHHHHHHHHHHHHHhc
Confidence 99863 79999999999999999864 443 22 22334 57999999999999753
No 10
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.4e-33 Score=232.88 Aligned_cols=142 Identities=19% Similarity=0.230 Sum_probs=124.7
Q ss_pred CCCCccccchhcCC-CCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 028878 47 HENDCVFCKIIRGE-SPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA 125 (202)
Q Consensus 47 ~~~~C~FC~ii~~e-~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~ 125 (202)
.++.|+||+|++++ .+.++|||++.|+||++++|.++||+|||||+|+.++.+|+++++.+|+.+++.+.++|++.+++
T Consensus 67 ~~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~ 146 (218)
T 3ano_A 67 ASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRP 146 (218)
T ss_dssp ---CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35689999999884 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCcc-ceEEEEEEeccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHhhhhh
Q 028878 126 DSFNLLVNNGAAAGQVI-FHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNIC 190 (202)
Q Consensus 126 ~~~ni~~n~g~~agq~v-~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~~e~~ela~~LR~~l~~~~ 190 (202)
++||+++|+|+.+||++ +|+|+|||||+.+|..|+. .|.... ..+.++++++++||++|.+..
T Consensus 147 ~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~gd~~f~~-v~g~~~-~~~~~l~~~~~~Lr~al~~~~ 210 (218)
T 3ano_A 147 HGFNVGLNLGTSAGGSLAEHLHVHVVPRWGGDANFIT-IIGGSK-VIPQLLRDTRRLLATEWARQP 210 (218)
T ss_dssp SEEEEEEEESGGGTCTTTTSCCEEEEEECTTGGGCCC-CC------CCHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEecCcccCCcccCEEEEEEEcccCCCCCccc-cccccc-CCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999 9999999999999988863 454332 224679999999999997763
No 11
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.98 E-value=5e-32 Score=213.20 Aligned_cols=136 Identities=16% Similarity=0.254 Sum_probs=118.6
Q ss_pred CCCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028878 45 SGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD 124 (202)
Q Consensus 45 ~~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g 124 (202)
...++.|+||+++ +.++|||+++|+||++++|.++||+||+||+|+.++.+|+++++.+|+.+++++.+++++.++
T Consensus 6 ~~~~~~C~FC~~~----~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~ 81 (154)
T 2oik_A 6 MSFHKNCELCTTA----GGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMR 81 (154)
T ss_dssp -CCCTTCHHHHSC----CSEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCCC----CCeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456789999854 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCCC-CCC-CHHHHHHHHHHHHHhhhh
Q 028878 125 ADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRP-LKI-DQETSQLADQVREKLSNI 189 (202)
Q Consensus 125 ~~~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~~-~~~-~~e~~ela~~LR~~l~~~ 189 (202)
+++||++ .+||+++|+|+|||||+.+|..||...|.... ... +.++++++++||++|.+.
T Consensus 82 ~~g~ni~-----~~gq~v~HlHiHiiPr~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~l~~~l~~~ 143 (154)
T 2oik_A 82 PDKINLA-----SLGNMTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVR 143 (154)
T ss_dssp CSEEEEE-----ECCSSSCSCEEEEEEECTTSSSTTSCTTSCCCSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEhH-----HhCCCCCEEEEEEeCCCCCCCCCCccccCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 9999997 36899999999999999999999876675432 222 246889999999888764
No 12
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.97 E-value=1.7e-32 Score=207.67 Aligned_cols=108 Identities=22% Similarity=0.436 Sum_probs=97.2
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HcCCC
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMK-ATDAD 126 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~-~~g~~ 126 (202)
+++|+||+|++++.|.++|||++.++||+|.+|.+|||+||+||+|+.++.+|+++|..+++.++..+.+.+++ .++++
T Consensus 2 ~~~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~ 81 (119)
T 3n1s_A 2 AEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_dssp CCCCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCCChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999877777777655555554 46788
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCC
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAH 155 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~ 155 (202)
+||+++|+|+.+||+|+|+|+|||||+.-
T Consensus 82 g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 82 GYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp CEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred CeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 99999999999999999999999999764
No 13
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.97 E-value=2.3e-32 Score=208.67 Aligned_cols=116 Identities=26% Similarity=0.458 Sum_probs=100.0
Q ss_pred CCCCCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028878 44 ESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT 123 (202)
Q Consensus 44 ~~~~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~ 123 (202)
.+..+++|+||+|++++.+.++|||++.++||+|.+|.++||+|||||+|+.++.+|++++...++.++..+.+.+++..
T Consensus 10 ~~~~~~~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~ 89 (126)
T 3o1c_A 10 VARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLG 89 (126)
T ss_dssp --CTTCSSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhC
Confidence 44478899999999999999999999999999999999999999999999999999999988777777764444444443
Q ss_pred CCCceEEEEecCCCCCCccceEEEEEEeccCCCCCCcc
Q 028878 124 DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 124 g~~~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
.+++||+++|+|+.+||+|+|+|+|||||.. ..||.
T Consensus 90 ~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~--~~~~~ 125 (126)
T 3o1c_A 90 LKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ--MNWPP 125 (126)
T ss_dssp CTTCEEEECCCHHHHTCCSSSCCEEEEESSC--CCSSC
T ss_pred CCCCeEEEEecCCccCCccCEeEEEEeCCcc--cCCCC
Confidence 4579999999999999999999999999976 46764
No 14
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.97 E-value=1.4e-31 Score=201.65 Aligned_cols=111 Identities=30% Similarity=0.511 Sum_probs=96.6
Q ss_pred CCC-ccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028878 48 END-CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD 126 (202)
Q Consensus 48 ~~~-C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~ 126 (202)
+.+ |+||++++++.+.++|||+++|+||+|.+|.++||+||+||+|+.++.+|+++|+.+++.+++.+.+.+++.+. +
T Consensus 5 m~~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~-~ 83 (117)
T 3oj7_A 5 MADSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP-E 83 (117)
T ss_dssp ----CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-T
T ss_pred cCCCCcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 345 99999999999999999999999999999999999999999999999999999888888888755555555454 4
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCcc
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
+||+++|+|+.+||+++|+|+|||||++ ..||.
T Consensus 84 g~ni~~n~g~~agq~v~H~H~Hiipr~~--~~~~~ 116 (117)
T 3oj7_A 84 GYRVVNNIGEDAGQTVKHIHFHILGGKK--LAWDK 116 (117)
T ss_dssp CEEEECCCSTTTTCCSSSCCEEEEESSC--CCCCC
T ss_pred CeEEEEcCCCCCCeeeeEEEEEEeCCCC--CCCCC
Confidence 9999999999999999999999999976 45763
No 15
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.97 E-value=1.7e-31 Score=201.59 Aligned_cols=108 Identities=37% Similarity=0.614 Sum_probs=96.1
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CC
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT--DA 125 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~--g~ 125 (202)
.+.|+||+|++++.+.++|||+++|+||+|++|.++||+||+||+|+.++.+|+++|+.+|+.+++.+ +++.+.+ ++
T Consensus 3 ~~~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~-~~~~~~~~~~~ 81 (119)
T 4egu_A 3 RMDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVI-NKIAKEKGFDQ 81 (119)
T ss_dssp CTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHH-HHHHHHHTHHH
T ss_pred CCCccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHH-HHHHHHhCCCC
Confidence 46899999999999999999999999999999999999999999999999999999888888877644 4444443 46
Q ss_pred CceEEEEecCCCCCCccceEEEEEEeccCCC
Q 028878 126 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 156 (202)
Q Consensus 126 ~~~ni~~n~g~~agq~v~HlHiHVIPR~~~d 156 (202)
++||+++|+|+.+||+++|+|+|||||+...
T Consensus 82 ~~~ni~~n~g~~agq~v~HlH~Hiip~~~~~ 112 (119)
T 4egu_A 82 TGFRVINNCGSDGGQEVKHLHYHILAGKKLP 112 (119)
T ss_dssp HCEEEEEEETTTTTCCSCSCCEEEEESSCCC
T ss_pred CCEEEEEeCCCCCCCCcCEEEEEEeCCcccC
Confidence 7899999999999999999999999998644
No 16
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.97 E-value=1.3e-30 Score=203.46 Aligned_cols=134 Identities=21% Similarity=0.357 Sum_probs=110.7
Q ss_pred cccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Q 028878 52 VFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLL 131 (202)
Q Consensus 52 ~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~ 131 (202)
.||.+. ..+.++|||++.|+||++++|.++||+|||||+|+.++.+|+++++.+|+.+++.+++++.+.+++++||++
T Consensus 4 ~f~~~~--ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~ 81 (147)
T 1fit_A 4 RFGQHL--IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFS 81 (147)
T ss_dssp EETTEE--ECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCcc--cCCcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 466542 124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCccceEEEEEEeccCCCCCCccccccC---------CCCCCC-HHHHHHHHHHHHHhh
Q 028878 132 VNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRR---------RPLKID-QETSQLADQVREKLS 187 (202)
Q Consensus 132 ~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~---------~~~~~~-~e~~ela~~LR~~l~ 187 (202)
+|+|+.+||+++|+|+|||||+.+|..|+.+.|.. .....+ +|+++++++||++|+
T Consensus 82 ~n~g~~agq~v~HlH~HiiPr~~~d~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~a~~lr~~l~ 147 (147)
T 1fit_A 82 MQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAAALRVYFQ 147 (147)
T ss_dssp ECCSGGGTCCSSSCCEEEEEECTTC--------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred EecCCccCCCccEEEEEEECCcCCCCCCcchHHHHhhhcccccccccCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988776654321 122344 579999999998763
No 17
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.97 E-value=1e-30 Score=204.90 Aligned_cols=112 Identities=30% Similarity=0.497 Sum_probs=99.4
Q ss_pred CCCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--
Q 028878 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATD-- 124 (202)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g-- 124 (202)
.+++|+||+|++++.+.++|||++.|+||+|++|.++||+||+||+|+.++.+|+++|..+++.+++ +++++.+.++
T Consensus 33 ~m~~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~-~~~~v~~~~~~~ 111 (147)
T 1xqu_A 33 TLENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHK-AANKVAEDLGIA 111 (147)
T ss_dssp -CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHH-HHHHHHHHTTCT
T ss_pred ccCCCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHH-HHHHHHHHhCCC
Confidence 3568999999999999999999999999999999999999999999999999999998888888887 4455555565
Q ss_pred CCceEEEEecCCCCCCccceEEEEEEeccCCCCCCcc
Q 028878 125 ADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 161 (202)
Q Consensus 125 ~~~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~ 161 (202)
+++||+++|+|+.+||+++|+|+|||||+. ..||.
T Consensus 112 ~~gyni~~n~g~~aGq~v~HlHlHiiP~~~--~~wp~ 146 (147)
T 1xqu_A 112 EKGYRLITNCGVAAGQTVFHLHYHLLGGVD--MGPKI 146 (147)
T ss_dssp TTCEEEECCCSTTTTCCSCSCCEEEEESSC--CCSCC
T ss_pred CCCEEEEEecCcccCCCccEEEEEEeCCCc--CCCCC
Confidence 568999999999999999999999999975 56764
No 18
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.96 E-value=3.3e-28 Score=188.53 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=111.6
Q ss_pred CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028878 62 PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 141 (202)
Q Consensus 62 p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~ 141 (202)
+..+|++++.++|+++..|.+|||+||+||+|+.++.||++++..+++..+.++++++++.++++++|++ .+||+
T Consensus 12 d~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~ 86 (137)
T 3ohe_A 12 DTHKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-----ALGNM 86 (137)
T ss_dssp HEEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-----ECCSS
T ss_pred ccEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-----eccCc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999998 48999
Q ss_pred cceEEEEEEeccCCCCCCccccccC-CCCCCC-HHHHHHHHHHHHHhhhh
Q 028878 142 IFHTHIHIIPRKAHDCLWTSESLRR-RPLKID-QETSQLADQVREKLSNI 189 (202)
Q Consensus 142 v~HlHiHVIPR~~~d~~~p~~~~~~-~~~~~~-~e~~ela~~LR~~l~~~ 189 (202)
|+|+|+|||||+.+|..||...|.. .+..++ +|+++++++||++|.+.
T Consensus 87 V~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~~~~~ir~~L~~~ 136 (137)
T 3ohe_A 87 VPQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLLEQL 136 (137)
T ss_dssp CCSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999777754 233445 57999999999999754
No 19
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.96 E-value=4.9e-29 Score=224.64 Aligned_cols=135 Identities=23% Similarity=0.319 Sum_probs=114.8
Q ss_pred CCCccccchhcCCCCc-cEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028878 48 ENDCVFCKIIRGESPA-VKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDAD 126 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~-~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~ 126 (202)
.+.|+||+ ++.|. +||||+++|+||+|++|.++||+||+||+|+.++.+|+++++.+|+.+++++.+++.+.++++
T Consensus 296 ~~~c~fc~---~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~ 372 (440)
T 1ems_A 296 TGGLKFAR---FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVT 372 (440)
T ss_dssp SSCCEETT---EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCceeeec---cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 67899998 45554 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCccceEEEEEEeccCCCCCCccccccCC--------CCCCC-HHHHHHHHHHHHHh
Q 028878 127 SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRR--------PLKID-QETSQLADQVREKL 186 (202)
Q Consensus 127 ~~ni~~n~g~~agq~v~HlHiHVIPR~~~d~~~p~~~~~~~--------~~~~~-~e~~ela~~LR~~l 186 (202)
+||+++|+|+.+||+++|+|+|||||+.+|..|+ ..|... ....+ +|+++++++||++|
T Consensus 373 ~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (440)
T 1ems_A 373 STTICVQDGKDAGQTVPHVHIHILPRRAGDFGDN-EIYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM 440 (440)
T ss_dssp EEEEECCCSGGGTCCSSSCCEEEEEECSSCC--------------------CCCHHHHHHHHHHHHTTC
T ss_pred CeEEEEecCCCCCCCccEEEEEEeCCCCCCCCcc-hhHHHhhhcccccccCCCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999997776 445211 12234 57999999999754
No 20
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.95 E-value=1.2e-27 Score=187.83 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=111.9
Q ss_pred CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028878 62 PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 141 (202)
Q Consensus 62 p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~ 141 (202)
+..+|++++.++|+++..|.+|||+||+||+|+.++.||++++..+++..+..++++|++.++++++|++. +||+
T Consensus 12 d~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~-----aGq~ 86 (149)
T 3i24_A 12 DCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA-----LGNL 86 (149)
T ss_dssp HEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-----CCSS
T ss_pred CCEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh-----hhCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999983 8999
Q ss_pred cceEEEEEEeccCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHhhhhh
Q 028878 142 IFHTHIHIIPRKAHDCLWTSESLRRR-PLKID-QETSQLADQVREKLSNIC 190 (202)
Q Consensus 142 v~HlHiHVIPR~~~d~~~p~~~~~~~-~~~~~-~e~~ela~~LR~~l~~~~ 190 (202)
|+|+|+|||||+.+|..||...|... +..++ +|+++++++||++|....
T Consensus 87 V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a~kIr~~L~~~~ 137 (149)
T 3i24_A 87 VPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNIS 137 (149)
T ss_dssp CCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHHTTST
T ss_pred CCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998777642 23344 579999999999997643
No 21
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.94 E-value=1.4e-27 Score=210.48 Aligned_cols=139 Identities=12% Similarity=0.140 Sum_probs=119.9
Q ss_pred CCCccccchhcCCCCc--cEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 028878 48 ENDCVFCKIIRGESPA--VKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDA 125 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~--~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~ 125 (202)
.+.|+||+|++++.+. ++|||+++|+||++++|.++||+||+||+|+.++.+|+++++.+|+.+++.+.+++.+.+++
T Consensus 193 ~~~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~ 272 (348)
T 1gup_A 193 QKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQC 272 (348)
T ss_dssp HSSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4789999999988765 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-ceEEEEecCCCC--CCccceEEEEEEe---ccCCCCCCcccc-ccCCCCCCCHHHHHHHHHHHHHhh
Q 028878 126 D-SFNLLVNNGAAA--GQVIFHTHIHIIP---RKAHDCLWTSES-LRRRPLKIDQETSQLADQVREKLS 187 (202)
Q Consensus 126 ~-~~ni~~n~g~~a--gq~v~HlHiHVIP---R~~~d~~~p~~~-~~~~~~~~~~e~~ela~~LR~~l~ 187 (202)
+ +||+++|.++.. +|+++|+|+|||| |+.++..|..+. +..... .+...+++|++||+++.
T Consensus 273 ~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl~R~~~~~~~~~g~e~~~~~~-~~~~pE~~A~~Lr~~~~ 340 (348)
T 1gup_A 273 SFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQ-RDLTAEQAAERLRAVSD 340 (348)
T ss_dssp CCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHHTCCE-ESSCHHHHHHHHHTSCS
T ss_pred CCCeEEEEEeCCCCCCCCcccEEEEEEecchhccCCcccceeeEecccCCC-CCCCHHHHHHHHHhhhh
Confidence 7 999999999875 4899999999999 998876665421 211111 13358999999998764
No 22
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.93 E-value=1.1e-25 Score=173.79 Aligned_cols=119 Identities=20% Similarity=0.279 Sum_probs=105.8
Q ss_pred CccEEEEcCeEEEEEcCCCCCceEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCC
Q 028878 62 PAVKLYEYDTCLCILDTNPLSLGHSLIVPK-SHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQ 140 (202)
Q Consensus 62 p~~iV~e~~~~va~~~~~p~~~Gh~LViPk-rHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq 140 (202)
+..+|++++.++|+++..|.+|| ++|||| +|+.++.||++++..+++..+.++++++++.++++++|++ .+||
T Consensus 14 ~~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq 87 (135)
T 3nrd_A 14 DGIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGN 87 (135)
T ss_dssp HEEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCS
T ss_pred CCEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----eccC
Confidence 35799999999999999999996 577787 7999999999999999999999999999999999999997 4899
Q ss_pred ccceEEEEEEeccCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHh
Q 028878 141 VIFHTHIHIIPRKAHDCLWTSESLRRR-PLKID-QETSQLADQVREKL 186 (202)
Q Consensus 141 ~v~HlHiHVIPR~~~d~~~p~~~~~~~-~~~~~-~e~~ela~~LR~~l 186 (202)
+|+|+|+|||||+.+|..||...|... +..++ +|+++++++||++|
T Consensus 88 ~V~HlH~HviPR~~~D~~~~~~~~~~~~~~~~~~~el~~~a~~i~~~L 135 (135)
T 3nrd_A 88 IVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 135 (135)
T ss_dssp SCCSCCEEEEEECTTSTTTTSCSTTCSCCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEecCCCCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999998777543 33345 57999999999875
No 23
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.93 E-value=1.6e-26 Score=204.02 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=114.5
Q ss_pred CCCccccchhcCCCCccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 028878 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADS 127 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~ 127 (202)
++.|+||+|++++. +|||+++|+||+|++|.+|||+||+||+|+.+|.+|+++++.+|+.+++.+.+++.+.+++++
T Consensus 213 ~~~ciFc~ii~~E~---iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~ 289 (351)
T 1z84_A 213 TGKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPP 289 (351)
T ss_dssp HSSCTTTTHHHHSE---EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCCCHHHHHHhcCe---EEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47899999999875 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCC----CccceEEEEEEeccCCCCCCccccccCCCCCCCHHHHHHHHHHHHH
Q 028878 128 FNLLVNNGAAAG----QVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREK 185 (202)
Q Consensus 128 ~ni~~n~g~~ag----q~v~HlHiHVIPR~~~d~~~p~~~~~~~~~~~~~e~~ela~~LR~~ 185 (202)
||+++|+++.+| |.++|+|+||+||++...+|-.. .+... -+.+.+++|++||++
T Consensus 290 yn~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~~~Gfe~~--~~~~i-~~~~pE~~A~~LR~~ 348 (351)
T 1z84_A 290 YNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIG--TGCYI-NPVFPEDVAKVMREV 348 (351)
T ss_dssp EEEEEECCCTTCCGGGGGGCCCEEEEEECCCCCCHHHHH--HSCCE-ESSCHHHHHHHHHHC
T ss_pred EEEEEeCCCccCCCCCCccceEEEEEEccCCCcCccccc--cCccc-CCccHHHHHHHHHhc
Confidence 999999999887 79999999999999766543211 11111 123589999999964
No 24
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.93 E-value=8.3e-25 Score=171.72 Aligned_cols=120 Identities=20% Similarity=0.329 Sum_probs=106.5
Q ss_pred ccEEEEcCeEEEEEcCCCCCceEEEEEecC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 028878 63 AVKLYEYDTCLCILDTNPLSLGHSLIVPKS-HFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQV 141 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p~~~Gh~LViPkr-Hv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~ 141 (202)
..++++.+.++|++...| +.+|+|||||+ |+.++.||+++++.+|+..++++++++.+.++++++|+. .+||+
T Consensus 18 ~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~-----~aGq~ 91 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNL 91 (149)
T ss_dssp EEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSS
T ss_pred CEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----ecCCc
Confidence 578999999999998665 55589999999 899999999999999999999999999999999999996 48999
Q ss_pred cceEEEEEEeccCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHhhh
Q 028878 142 IFHTHIHIIPRKAHDCLWTSESLRRR-PLKID-QETSQLADQVREKLSN 188 (202)
Q Consensus 142 v~HlHiHVIPR~~~d~~~p~~~~~~~-~~~~~-~e~~ela~~LR~~l~~ 188 (202)
|+|+|+|||||+.+|..||.+.|... +..++ +|+++++++||++|..
T Consensus 92 V~HlH~HvIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a~~Ir~~L~~ 140 (149)
T 3i4s_A 92 VPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKIWL 140 (149)
T ss_dssp CCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEEECCcCCCCCCCccccCCCcCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998888643 33445 5799999999998864
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.47 E-value=1.4e-14 Score=118.47 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred EEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCCCCHH--HHHHHHHHHHHHHH-H-HHHHc--------CC---CceE
Q 028878 65 KLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPS--VVAAMCAKVPLISN-A-IMKAT--------DA---DSFN 129 (202)
Q Consensus 65 iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~dL~~e--e~~~l~~~l~~v~~-~-l~~~~--------g~---~~~n 129 (202)
+|||+|.++||.|.+|.++||+|||||+|+.++.++.+. +...|...+..++. . |.+.+ +. .+|.
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 102 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence 999999999999999999999999999999998775442 22333444433333 2 33222 11 1221
Q ss_pred EEEecCCCCCCccceEEEEEEeccC
Q 028878 130 LLVNNGAAAGQVIFHTHIHIIPRKA 154 (202)
Q Consensus 130 i~~n~g~~agq~v~HlHiHVIPR~~ 154 (202)
..++.|..+++++.|+|+|||.+-.
T Consensus 103 ~~i~~GfHa~PSm~HLHLHVIS~Df 127 (204)
T 3sp4_A 103 NYIKVGFHAGPSMNNLHLHIMTLDH 127 (204)
T ss_dssp TTEEEEEESSCSSSSCCEEEEESCC
T ss_pred eeEeccCCCCCcccceeEEEeccCC
Confidence 2333344567899999999998643
No 26
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=98.87 E-value=6.5e-09 Score=89.28 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=75.4
Q ss_pred cchhcC-CCCccEEEEcCe----EEEEEcCC----CCCceEEEEEecCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028878 54 CKIIRG-ESPAVKLYEYDT----CLCILDTN----PLSLGHSLIVPKSH-FSCLDATPPSVVAAMCAKVPLISNAIMKAT 123 (202)
Q Consensus 54 C~ii~~-e~p~~iV~e~~~----~va~~~~~----p~~~Gh~LViPkrH-v~~l~dL~~ee~~~l~~~l~~v~~~l~~~~ 123 (202)
=+|+.+ +.+.++||+++. |+++.|.. |...-|+|+||++| +.++.+|..+.+.-|-.+.....+.+.+.+
T Consensus 141 ~nIl~~~~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y 220 (301)
T 3bl9_A 141 YNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRY 220 (301)
T ss_dssp HHHHTTSSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCccccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhc
Confidence 345555 345789999988 99999977 78999999999988 999999999987555555555666677766
Q ss_pred C--CCceEEEEecCCCCCCccceEEEEEEecc
Q 028878 124 D--ADSFNLLVNNGAAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 124 g--~~~~ni~~n~g~~agq~v~HlHiHVIPR~ 153 (202)
| .+.+.++++..| +++|+|+|||...
T Consensus 221 ~~~~~~~rlgfHy~P----S~yHLHlHvis~~ 248 (301)
T 3bl9_A 221 RMKGDHLRVYLHYLP----SYYHLHVHFTALG 248 (301)
T ss_dssp CCCGGGEEEEEESSC----SSSSCEEEEEETT
T ss_pred CCChHHeEEEecCCC----CcceEEEEEEecC
Confidence 6 346889998755 7899999999643
No 27
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.84 E-value=1.2e-08 Score=89.72 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=81.5
Q ss_pred CCCccccchhcCCCCccEEE-----EcCeEEEEEcCCCCCc------------e-----------EEEEEecCCCCCCCC
Q 028878 48 ENDCVFCKIIRGESPAVKLY-----EYDTCLCILDTNPLSL------------G-----------HSLIVPKSHFSCLDA 99 (202)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iV~-----e~~~~va~~~~~p~~~------------G-----------h~LViPkrHv~~l~d 99 (202)
...|+||.-.....+..+.. .+-.+++|.+.+|... | +|+|.+.+|..++.+
T Consensus 60 ~~~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ 139 (351)
T 1z84_A 60 PSSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSD 139 (351)
T ss_dssp -CCCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGG
T ss_pred CCCCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHH
Confidence 44799998543333332222 3456799999999983 4 889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEEe
Q 028878 100 TPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP 151 (202)
Q Consensus 100 L~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVIP 151 (202)
|+.+++.++......-.+.|.+..+...++++.|.|+.+|.+++|.|.||+-
T Consensus 140 ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 140 IDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 9999999998888777677766556667889999999999999999999974
No 28
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.82 E-value=9.3e-09 Score=89.62 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=73.5
Q ss_pred chhcC-CCCccEEEEcCe----EEEEEcCC----CCCceEEEEEecCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 028878 55 KIIRG-ESPAVKLYEYDT----CLCILDTN----PLSLGHSLIVPKSH-FSCLDATPPSVVAAMCAKVPLISNAIMKATD 124 (202)
Q Consensus 55 ~ii~~-e~p~~iV~e~~~----~va~~~~~----p~~~Gh~LViPkrH-v~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g 124 (202)
+|+.+ ..+.+|||+++. |+++.|.. |...-|+|+||++| +.++.+|..+.+.-|-.+.....+.+.+.+|
T Consensus 189 nIl~~~~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg 268 (350)
T 1vlr_A 189 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQ 268 (350)
T ss_dssp HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCCccccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcC
Confidence 45544 345789999988 99999977 78999999999988 9999999999875555555556666777666
Q ss_pred C--CceEEEEecCCCCCCccceEEEEEEecc
Q 028878 125 A--DSFNLLVNNGAAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 125 ~--~~~ni~~n~g~~agq~v~HlHiHVIPR~ 153 (202)
. ..+.++++..| +++|+|+|||...
T Consensus 269 ~~~~~lRlgfHy~P----S~yHLHlHvis~~ 295 (350)
T 1vlr_A 269 VTGDRLRVYLHYLP----SYYHLHVHFTALG 295 (350)
T ss_dssp CCGGGEEEEEESSC----SSSSCEEEEEETT
T ss_pred CChHHeEEEecCCC----CcceEEEEEEecc
Confidence 3 46889988755 7899999999643
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=97.02 E-value=0.0021 Score=56.06 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEEEE
Q 028878 85 HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 85 h~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
.|+|...+|-.++.+|+.+++..+......-...|... ..-+.+.-|.|+.+|.+..|-|..|+
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~~--~~yV~iF~N~G~~~G~Sl~HpH~Qi~ 170 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPGGQIW 170 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHH--CSEEEEEEEESGGGTCSCCSSEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHhhc--CCEEEEecccCCcCCcCCCCCceeEE
Confidence 56666779999999999999888888777666666532 22234566889999999999999986
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=96.11 E-value=0.0056 Score=50.37 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=51.3
Q ss_pred EEEEcCeEEEEEcCCCCCceEEEEEecCCCCCCCC---C---CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 028878 65 KLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDA---T---PPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAA 138 (202)
Q Consensus 65 iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~l~d---L---~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~a 138 (202)
.|.....+++|.| +..+.|.|+||...|+-+.+ + ++.-+.+-+..=..|.+++.+.+..+.+.+.+|. ..
T Consensus 33 ~Vd~~~gyvvlKD--~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS--~~ 108 (227)
T 2pof_A 33 EVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINS--RT 108 (227)
T ss_dssp EEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBC--GG
T ss_pred eEccCCCEEEEeC--CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecC--CC
Confidence 4455577777777 44777899999999887754 2 1223333333333344444444433456777765 46
Q ss_pred CCccceEEEEEE
Q 028878 139 GQVIFHTHIHII 150 (202)
Q Consensus 139 gq~v~HlHiHVI 150 (202)
|.+..||||||-
T Consensus 109 gRSQnQLHIHIs 120 (227)
T 2pof_A 109 GRTQNHFHIHIS 120 (227)
T ss_dssp GCSCCSCCEEEE
T ss_pred Cccccceeeehh
Confidence 888999999984
No 31
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=87.33 E-value=0.33 Score=35.27 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=26.9
Q ss_pred eEEeccccCCCCCCCCCCCcc--chhhhhhccc
Q 028878 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRL 39 (202)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 39 (202)
+..++||+|.+.++..+..|+ +|..|++.+.
T Consensus 49 ~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~ 81 (112)
T 2qgp_A 49 ELTMDHLVPVVRGGKSTRGNVVPACKECNNRKK 81 (112)
T ss_dssp GEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHH
T ss_pred CcEEEEEeehhcCCCCChhhChhhCHHHHHHHc
Confidence 478999999999998888887 9999998853
No 32
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=59.10 E-value=10 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.8
Q ss_pred CCceEEEEecCCCCCCccceEEEEEE
Q 028878 125 ADSFNLLVNNGAAAGQVIFHTHIHII 150 (202)
Q Consensus 125 ~~~~ni~~n~g~~agq~v~HlHiHVI 150 (202)
.+.+++.+|. ...|-+++|.|||+.
T Consensus 76 vDHVdi~~~~-gHpGve~PHyhI~l~ 100 (116)
T 3vg8_G 76 IDHVNMIPSG-PHPGVSEPHYHIELV 100 (116)
T ss_dssp CCEEEEEECC-CCTTCCSCEEEEEEE
T ss_pred cceEEEecCC-CCCCcccCceEEEEE
Confidence 3668888864 467889999999986
No 33
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=47.13 E-value=9.1 Score=23.50 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=20.7
Q ss_pred ccchhhhhhccccCCcCCCCCCCccccch
Q 028878 28 GVSASFCAQQRLSHSQESGHENDCVFCKI 56 (202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~C~FC~i 56 (202)
-|.|..|+++-.+.+-..-+.-.|++|..
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 47899999996555556666778999974
No 34
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=27.70 E-value=97 Score=23.99 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCc--eEEEEecCCCCCCccceEEEEEEecc
Q 028878 98 DATPPSVVAAMCAKVPLISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIPRK 153 (202)
Q Consensus 98 ~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~--~ni~~n~g~~agq~v~HlHiHVIPR~ 153 (202)
.+|+.++..+|.+ ..+++.+...+ +.+.++.. ++..+|+||=+--|.
T Consensus 80 ~EL~~eq~~~L~~------~f~~~~~~~~G~~~d~AIH~~---~~~NpHaHim~t~R~ 128 (185)
T 2ns6_A 80 VELTLDQQKALAS------EFAQHLTGAERLPYTLAIHAG---GGENPHCHLMISERI 128 (185)
T ss_dssp TTSCHHHHHHHHH------HHHHHHHTTTTCCEEEEEEEE---TTTEEEEEEEECCBC
T ss_pred ccCCHHHHHHHHH------HHHHHHHHhcCCEEEEEEEcC---CCCCceEEEEEeecc
Confidence 4588887765544 23344444433 56777762 334455555544454
No 35
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.57 E-value=57 Score=23.27 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=24.8
Q ss_pred cchhhhhhccccCCcCCCCCCCccccchhcCCCCccEEE
Q 028878 29 VSASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLY 67 (202)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~p~~iV~ 67 (202)
+.|..||-+- .+..+....|+.|+--+-+.|...|.
T Consensus 68 ~~C~~CG~~F---~~~~~kPsrCP~CkSe~Ie~P~F~I~ 103 (105)
T 2gmg_A 68 AQCRKCGFVF---KAEINIPSRCPKCKSEWIEEPRFKLE 103 (105)
T ss_dssp CBBTTTCCBC---CCCSSCCSSCSSSCCCCBCCCCEEEE
T ss_pred cChhhCcCee---cccCCCCCCCcCCCCCccCCcceeec
Confidence 3799999883 23445678899999766666655543
No 36
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=24.55 E-value=81 Score=23.58 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=33.9
Q ss_pred chhhhhhccc--cCCcCCCCCCCccccchhcCCCC----ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCC
Q 028878 30 SASFCAQQRL--SHSQESGHENDCVFCKIIRGESP----AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFS 95 (202)
Q Consensus 30 ~~~~~~~~~~--~~~~~~~~~~~C~FC~ii~~e~p----~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~ 95 (202)
-|..|+..-- ...+.......|..|.......+ ..+|..++.+++.........| .+.+|.-++.
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g-~w~lPgG~ve 75 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRG-KWTLPAGFME 75 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSSTT-CEECSEEECC
T ss_pred cCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCCCC-eEECceeecc
Confidence 5888888731 11112233445777763333222 2355566666555544332344 4677887775
No 37
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=24.06 E-value=23 Score=28.06 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=18.5
Q ss_pred chhhhhhccccCCcCCCCCCCccccchhcC
Q 028878 30 SASFCAQQRLSHSQESGHENDCVFCKIIRG 59 (202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~ 59 (202)
.|..|++.+..+.......-.|+||.....
T Consensus 136 ~C~~Cgg~fv~~~~~~~~~f~Cp~C~~psR 165 (192)
T 2avu_E 136 SCNCCGGNFITHAHQPVGSFACSLCQPPSR 165 (192)
T ss_dssp ECTTTCCEEEEESSCCSSCCCCTTC-----
T ss_pred cCCCCCCCeeCccCCCCCCCcCCCCCCccc
Confidence 799999997533344455677999985443
No 38
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=22.15 E-value=69 Score=22.55 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=23.7
Q ss_pred ccEEEEcCeEEEEEcCCCCCceEEEEEecCCCC
Q 028878 63 AVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFS 95 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~ 95 (202)
+.+|.|+.+.+.+.. .+.+.+|||.+..
T Consensus 35 GiVV~ETkntf~I~t-----~~~~k~VPK~~~v 62 (102)
T 1ts9_A 35 GEVVDETQNTLKIMT-----EKGLKVVAKRGRT 62 (102)
T ss_dssp EEEEEECSSEEEEEE-----SSSEEEEECTTCE
T ss_pred EEEEEeccceEEEEe-----CCcEEEEECCCEE
Confidence 579999999999887 4578999999864
No 39
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=21.50 E-value=3.2e+02 Score=22.02 Aligned_cols=85 Identities=13% Similarity=0.251 Sum_probs=45.7
Q ss_pred CCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCccceEEEE--EEeccCCCCC
Q 028878 81 LSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIH--IIPRKAHDCL 158 (202)
Q Consensus 81 ~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~g~~~~ni~~n~g~~agq~v~HlHiH--VIPR~~~d~~ 158 (202)
..+|.++|.|-.- +. ++...+..+.+.|.+....+.+... -.+.+|+=++ |.........
T Consensus 39 pFpGnTvI~~l~~-------~s----~~~~~l~~iq~~L~~~~~~~~~~~l-------PpsS~HMTvfdgv~e~~r~~~~ 100 (243)
T 2fsq_A 39 PEPGNTVVCHLVE-------GS----QTESAIVSTRQRFLDMPEASQLAFT-------PVSSLHMTVFQGVIESRRALPY 100 (243)
T ss_dssp CCCEEEEEEEBCT-------TS----HHHHHHHHHHHHHHTSGGGGGEEEC-------CGGGCEEEEEEEEETTCCSTTS
T ss_pred cCCCCeEEEecCC-------CC----hHHHHHHHHHHHHHhccccCceeeC-------CchhhhhhhccccccccccCCC
Confidence 3789999997554 11 2223444455666655434444332 1234566555 3444344566
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHHhhhh
Q 028878 159 WTSESLRRRPLKIDQETSQLADQVREKLSNI 189 (202)
Q Consensus 159 ~p~~~~~~~~~~~~~e~~ela~~LR~~l~~~ 189 (202)
||.. ...|..+++.-..+.+.|+++
T Consensus 101 wP~~------L~~d~~l~~~~~~~~~~l~~~ 125 (243)
T 2fsq_A 101 WPQT------LPLDTPIDAVTDYYRDRLSTF 125 (243)
T ss_dssp SCTT------SCTTCCHHHHHHHHHHHGGGC
T ss_pred CCcc------CcccchHHHHHHHHHHHHhcc
Confidence 8863 222344666666777777655
No 40
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=20.99 E-value=2.5e+02 Score=20.45 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=41.3
Q ss_pred ccEEEEcCeEEEEEcCCC-CCceEEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028878 63 AVKLYEYDTCLCILDTNP-LSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT 123 (202)
Q Consensus 63 ~~iV~e~~~~va~~~~~p-~~~Gh~LViPkrHv~~l~dL~~ee~~~l~~~l~~v~~~l~~~~ 123 (202)
.+|+.+++.|.+-.|... .+++ ||=--.- -.+|+..|+.+|.+++.++...+...-
T Consensus 3 ~~i~~eG~GWRLgwdp~~~~f~~--LIGge~W---AiELTe~E~~~f~~Ll~qL~~~~~~i~ 59 (122)
T 2nvn_A 3 GRILREGAGWRLGWDETAHRYPG--LVGTTDW---AVELTAAEMADFCRLVQQLAETIAAIA 59 (122)
T ss_dssp CEEEEEETTEEEEEETTCSSCCE--EEECSSC---EEEECHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hhhhhcCCCeEEEECCCcccCCE--EEccCch---heeeCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999988776653 3444 5552222 257999999999999999988887754
No 41
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.56 E-value=33 Score=19.31 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=11.0
Q ss_pred cCCCCCCCccccch
Q 028878 43 QESGHENDCVFCKI 56 (202)
Q Consensus 43 ~~~~~~~~C~FC~i 56 (202)
+++.-...|-||+-
T Consensus 4 gsskikqhcrfckk 17 (37)
T 2elu_A 4 GSSGIKQHCRFCKK 17 (37)
T ss_dssp CCCCCCCEETTTTE
T ss_pred chHHHHHHHHHHHH
Confidence 46777889999973
No 42
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=20.47 E-value=58 Score=17.25 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=8.9
Q ss_pred cccCCCCCCCC
Q 028878 14 HLLPTGPAPCS 24 (202)
Q Consensus 14 ~~~~~~~~~~~ 24 (202)
-.||++|+|-+
T Consensus 7 KFiPsRPAPKP 17 (26)
T 2rqw_B 7 KFIPSRPAPKP 17 (26)
T ss_dssp SSCCSSCCCCC
T ss_pred ccccCCCCCCC
Confidence 47999998866
No 43
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=20.12 E-value=52 Score=21.84 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=22.0
Q ss_pred CccEEEEcCeEEEEEcCCCCCceEEEEEecCCCCC
Q 028878 62 PAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSC 96 (202)
Q Consensus 62 p~~iV~e~~~~va~~~~~p~~~Gh~LViPkrHv~~ 96 (202)
.+++.|.+.+|+++.+.+ ++-.+|-|.++..
T Consensus 37 ~G~i~WQD~~cl~L~~~~----~~~~LI~R~AI~~ 67 (72)
T 3hfn_A 37 TGRVLWQDPTCVCIADEN----SRQTTIWKQAIAY 67 (72)
T ss_dssp EEEEEEECSSEEEEEC-------CEEEEEGGGEEE
T ss_pred EEEEEEECCCEEEEEcCC----CCeEEEEeeeeEE
Confidence 478999999999999766 3456777776643
Done!