BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028880
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 70 LLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L++E R I+ L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea virus (strain CP7) PE=1
SV=1
Length = 3907
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3484 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3521
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3
SV=1
Length = 3898
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3475 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3512
>sp|Q8RED8|LDH_FUSNN L-lactate dehydrogenase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=ldh PE=3 SV=1
Length = 318
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 144 IPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGL 190
+PD +K + I++ T +REL+G P +R+ G GTGL
Sbjct: 104 VPDVVKAGFNGIFVTITNPVDIVTYFVRELSG--FPKNRVIGTGTGL 148
>sp|Q5NNZ0|TIG_ZYMMO Trigger factor OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=tig PE=3 SV=1
Length = 492
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 50 QMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWS 109
+ IL V E +++L L RL +E I + ++ E+ + +
Sbjct: 109 KFEILPEVPEISFDDLKLERLTVEADNAVIDEK-------IKEFAEHQKSFDDSKKDHKA 161
Query: 110 ENRD-ALVDLFGKVRDEWMD----KDLTTWIGANRFYPGIPDAL---KFASSRIYIVT 159
EN D +VD GKV E + D++ +GA +F PG + L K SR+ VT
Sbjct: 162 ENGDLVVVDFVGKVDGEPFEGGTGSDMSVELGAGQFIPGFEEQLVGAKQGESRVLKVT 219
>sp|Q56339|FLHF_TREPA Flagellar biosynthesis protein FlhF OS=Treponema pallidum (strain
Nichols) GN=flhF PE=3 SV=1
Length = 437
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 36 FDGVDSVIEDWIVDQMHILRPVVETGYENLLLV 68
F+ V+S + WI++ +HI P + TG N++LV
Sbjct: 191 FEKVESTVLRWIIESVHIQVPPICTGTRNIVLV 223
>sp|A9N8L6|GUAA_COXBR GMP synthase [glutamine-hydrolyzing] OS=Coxiella burnetii (strain
RSA 331 / Henzerling II) GN=guaA PE=3 SV=1
Length = 524
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 105 MEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQS 163
+ D E R + F +V +E K W+G YP + ++ K + +++I+ T +
Sbjct: 301 ISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKVHIIKTHHN 359
>sp|Q07V09|PROA_RHOP5 Gamma-glutamyl phosphate reductase OS=Rhodopseudomonas palustris
(strain BisA53) GN=proA PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 38 GVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENW 97
G D + IV + RP V E LL+ R E + + + G V G E
Sbjct: 249 GADLAMAKAIVLNAKMRRPGVCGAAETLLVDRAAAEADLAPLLSVLIESGCEVRGDAEMQ 308
Query: 98 ---SKIKPVIMEDWS 109
+++KPV EDWS
Sbjct: 309 RVDTRVKPVAEEDWS 323
>sp|Q7VIN8|TIG_HELHP Trigger factor OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=tig PE=3 SV=1
Length = 442
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 73 EIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRD-ALVDLFGKVRDEWMD--- 128
E+++ +I K+ + E L E I +N + + + E + D A +D G V + +
Sbjct: 128 EVKLKTISKNLIDERL--EEIAKNRAPLNEITQERTLQKDDTAQIDFEGFVDGKAFEGGK 185
Query: 129 -KDLTTWIGANRFYPGIPDAL 148
++ IG+N+F PG DAL
Sbjct: 186 GENFNLAIGSNQFIPGFEDAL 206
>sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever virus (strain Brescia)
PE=3 SV=1
Length = 3898
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ W K KPV++ + E + L +F KV+ EW
Sbjct: 3476 LAITKVMYKWVKQKPVVIPGY-EGKTPLFQIFDKVKKEW 3513
>sp|P19712|POLG_CSFVA Genome polyprotein OS=Classical swine fever virus (strain Alfort)
PE=1 SV=2
Length = 3898
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ W K KPV++ + E + L +F KV+ EW
Sbjct: 3476 LAITKVMYKWVKQKPVVIPGY-EGKTPLFQIFDKVKKEW 3513
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,343,561
Number of Sequences: 539616
Number of extensions: 2905837
Number of successful extensions: 7899
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7895
Number of HSP's gapped (non-prelim): 15
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)