Query 028880
Match_columns 202
No_of_seqs 187 out of 1750
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0546 Gph Predicted phosphat 99.9 7.7E-23 1.7E-27 165.2 9.4 146 1-201 3-157 (220)
2 PRK13226 phosphoglycolate phos 99.9 2.3E-22 5.1E-27 163.2 7.8 144 1-201 11-163 (229)
3 PLN02770 haloacid dehalogenase 99.9 1E-21 2.2E-26 161.3 8.3 66 135-201 104-176 (248)
4 PRK13288 pyrophosphatase PpaX; 99.9 7E-22 1.5E-26 158.4 7.2 66 135-201 78-150 (214)
5 TIGR01422 phosphonatase phosph 99.9 4.4E-21 9.5E-26 157.7 11.2 156 2-201 2-168 (253)
6 PLN03243 haloacid dehalogenase 99.9 9.7E-21 2.1E-25 156.7 12.9 145 2-201 24-177 (260)
7 TIGR03351 PhnX-like phosphonat 99.8 6E-21 1.3E-25 153.4 10.1 145 2-201 1-157 (220)
8 PRK13478 phosphonoacetaldehyde 99.8 1.2E-20 2.5E-25 156.5 11.6 156 2-201 4-170 (267)
9 PLN02575 haloacid dehalogenase 99.8 3.1E-20 6.7E-25 160.1 11.8 144 3-201 132-284 (381)
10 TIGR01449 PGP_bact 2-phosphogl 99.8 9.3E-21 2E-25 151.3 7.8 144 5-201 1-153 (213)
11 COG0637 Predicted phosphatase/ 99.8 7.1E-21 1.5E-25 153.9 5.6 146 1-201 1-154 (221)
12 PRK11587 putative phosphatase; 99.8 3E-20 6.4E-25 149.6 7.4 141 1-200 2-149 (218)
13 PRK06698 bifunctional 5'-methy 99.8 4.9E-20 1.1E-24 163.7 8.5 144 1-201 240-397 (459)
14 PRK10725 fructose-1-P/6-phosph 99.8 5.2E-20 1.1E-24 144.4 7.6 143 2-201 5-154 (188)
15 PRK13225 phosphoglycolate phos 99.8 7.1E-20 1.5E-24 152.5 7.6 65 135-200 138-206 (273)
16 PRK10826 2-deoxyglucose-6-phos 99.8 1.2E-19 2.7E-24 146.3 8.4 66 135-201 88-160 (222)
17 PRK10563 6-phosphogluconate ph 99.8 1.6E-19 3.5E-24 145.3 8.0 66 135-201 84-154 (221)
18 PRK13223 phosphoglycolate phos 99.8 1.4E-19 3E-24 150.7 7.8 149 1-201 12-169 (272)
19 TIGR02009 PGMB-YQAB-SF beta-ph 99.8 1.9E-19 4.2E-24 140.5 8.0 63 136-201 85-154 (185)
20 TIGR01990 bPGM beta-phosphoglu 99.8 6.6E-19 1.4E-23 137.5 8.5 62 137-201 85-153 (185)
21 PLN02940 riboflavin kinase 99.8 5.7E-19 1.2E-23 153.5 8.1 143 2-201 11-162 (382)
22 PRK13222 phosphoglycolate phos 99.8 1.4E-18 3.1E-23 139.7 9.2 147 2-201 6-161 (226)
23 TIGR01548 HAD-SF-IA-hyp1 haloa 99.8 8.2E-19 1.8E-23 139.0 7.0 62 139-201 106-173 (197)
24 TIGR02253 CTE7 HAD superfamily 99.8 1.6E-18 3.4E-23 139.3 8.2 65 136-201 91-162 (221)
25 TIGR01454 AHBA_synth_RP 3-amin 99.8 1.2E-18 2.7E-23 138.7 6.7 65 136-201 72-143 (205)
26 PRK09449 dUMP phosphatase; Pro 99.7 3.5E-18 7.5E-23 137.7 7.4 65 136-201 92-162 (224)
27 TIGR02252 DREG-2 REG-2-like, H 99.7 1.3E-17 2.9E-22 132.3 8.5 63 137-201 103-172 (203)
28 TIGR01428 HAD_type_II 2-haloal 99.7 5.6E-17 1.2E-21 128.4 9.6 63 137-200 90-159 (198)
29 TIGR02254 YjjG/YfnB HAD superf 99.7 4.7E-17 1E-21 130.6 8.6 64 136-201 94-164 (224)
30 PRK10748 flavin mononucleotide 99.7 1.5E-16 3.2E-21 129.9 9.0 89 102-201 81-175 (238)
31 PHA02597 30.2 hypothetical pro 99.7 9.8E-17 2.1E-21 127.0 7.3 64 135-200 70-141 (197)
32 PLN02919 haloacid dehalogenase 99.7 9E-17 2E-21 154.6 8.4 147 2-201 75-230 (1057)
33 PRK14988 GMP/IMP nucleotidase; 99.7 3E-16 6.5E-21 127.1 10.2 65 136-201 90-161 (224)
34 TIGR01993 Pyr-5-nucltdase pyri 99.7 3.9E-16 8.6E-21 122.2 9.8 64 137-201 82-153 (184)
35 PLN02779 haloacid dehalogenase 99.7 2.2E-15 4.8E-20 126.3 14.2 62 138-200 143-213 (286)
36 PF13419 HAD_2: Haloacid dehal 99.6 1.1E-16 2.5E-21 122.4 4.3 65 136-201 74-145 (176)
37 TIGR01549 HAD-SF-IA-v1 haloaci 99.6 3.9E-16 8.4E-21 118.7 5.3 63 137-201 62-130 (154)
38 TIGR01493 HAD-SF-IA-v2 Haloaci 99.6 3.1E-16 6.8E-21 121.6 4.7 60 137-201 88-151 (175)
39 TIGR02247 HAD-1A3-hyp Epoxide 99.6 4.9E-16 1.1E-20 124.2 4.9 64 136-200 91-163 (211)
40 PLN02811 hydrolase 99.5 5.7E-15 1.2E-19 119.1 5.8 65 136-201 75-149 (220)
41 KOG2914 Predicted haloacid-hal 99.5 4.9E-15 1.1E-19 119.3 4.8 141 3-200 11-162 (222)
42 TIGR01509 HAD-SF-IA-v3 haloaci 99.5 1.7E-13 3.7E-18 106.4 11.1 62 138-201 84-152 (183)
43 PRK09456 ?-D-glucose-1-phospha 99.5 3.8E-13 8.3E-18 106.7 9.8 63 139-201 84-153 (199)
44 PLN02954 phosphoserine phospha 99.4 3.9E-13 8.4E-18 108.2 8.6 63 138-201 83-166 (224)
45 COG1011 Predicted hydrolase (H 99.4 1.5E-12 3.3E-17 104.7 10.9 63 137-201 97-166 (229)
46 PRK11590 hypothetical protein; 99.4 6.9E-13 1.5E-17 106.4 8.0 48 138-187 94-145 (211)
47 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.4 4.8E-13 1E-17 105.5 7.0 50 136-186 77-129 (201)
48 TIGR01672 AphA HAD superfamily 99.4 5.9E-13 1.3E-17 108.6 6.8 61 135-196 110-179 (237)
49 TIGR00338 serB phosphoserine p 99.4 9E-13 2E-17 105.7 7.5 63 137-200 83-162 (219)
50 TIGR01489 DKMTPPase-SF 2,3-dik 99.4 6.5E-12 1.4E-16 97.9 10.6 63 138-201 71-160 (188)
51 PRK09552 mtnX 2-hydroxy-3-keto 99.3 2.9E-12 6.4E-17 103.2 7.2 40 136-177 71-113 (219)
52 TIGR01681 HAD-SF-IIIC HAD-supe 99.2 2.3E-11 5.1E-16 90.2 5.2 62 139-201 29-101 (128)
53 TIGR01685 MDP-1 magnesium-depe 99.1 3.1E-11 6.7E-16 94.1 4.1 53 136-189 42-107 (174)
54 PRK13582 thrH phosphoserine ph 99.1 7.9E-10 1.7E-14 87.7 11.3 45 136-182 65-112 (205)
55 TIGR01684 viral_ppase viral ph 99.0 1.1E-09 2.4E-14 91.2 7.8 45 149-194 159-207 (301)
56 TIGR01545 YfhB_g-proteo haloac 99.0 8.8E-09 1.9E-13 82.7 12.6 48 138-187 93-144 (210)
57 PRK11133 serB phosphoserine ph 99.0 2.4E-09 5.3E-14 91.2 9.4 65 136-201 178-259 (322)
58 TIGR01691 enolase-ppase 2,3-di 99.0 4E-09 8.6E-14 85.3 10.0 66 135-201 91-164 (220)
59 TIGR01662 HAD-SF-IIIA HAD-supe 99.0 1.2E-09 2.7E-14 80.9 5.9 60 139-201 25-97 (132)
60 TIGR03333 salvage_mtnX 2-hydro 99.0 2.6E-09 5.7E-14 85.7 8.0 57 137-194 68-134 (214)
61 TIGR02137 HSK-PSP phosphoserin 98.9 6.1E-09 1.3E-13 83.2 9.4 43 137-181 66-111 (203)
62 TIGR01488 HAD-SF-IB Haloacid D 98.9 1.5E-08 3.2E-13 78.3 11.2 48 136-184 70-120 (177)
63 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.9 2.1E-08 4.5E-13 79.3 12.3 64 109-182 66-132 (202)
64 TIGR01664 DNA-3'-Pase DNA 3'-p 98.9 4.5E-09 9.7E-14 81.5 7.3 60 139-201 42-120 (166)
65 TIGR01656 Histidinol-ppas hist 98.9 3E-09 6.5E-14 80.6 5.3 62 139-201 27-113 (147)
66 PRK11009 aphA acid phosphatase 98.8 1.5E-08 3.3E-13 82.8 8.8 54 135-189 110-172 (237)
67 PRK08942 D,D-heptose 1,7-bisph 98.8 1.3E-08 2.7E-13 79.7 7.3 61 138-201 28-115 (181)
68 TIGR00213 GmhB_yaeD D,D-heptos 98.8 2.4E-08 5.1E-13 77.8 8.8 61 138-201 25-118 (176)
69 PF06888 Put_Phosphatase: Puta 98.8 1.8E-08 3.9E-13 82.1 7.9 51 136-187 68-123 (234)
70 PHA03398 viral phosphatase sup 98.8 1.6E-08 3.4E-13 84.4 7.5 40 149-189 161-200 (303)
71 COG0560 SerB Phosphoserine pho 98.8 1.1E-07 2.3E-12 76.6 10.8 48 138-186 76-126 (212)
72 TIGR01686 FkbH FkbH-like domai 98.6 4.5E-08 9.7E-13 83.4 6.0 61 139-201 31-98 (320)
73 PRK08238 hypothetical protein; 98.6 2.9E-07 6.4E-12 82.4 11.1 48 138-189 71-121 (479)
74 KOG3085 Predicted hydrolase (H 98.6 2.6E-07 5.6E-12 75.1 9.4 62 137-200 111-179 (237)
75 cd01427 HAD_like Haloacid deha 98.6 2.5E-07 5.4E-12 67.2 7.4 50 138-188 23-75 (139)
76 PRK05446 imidazole glycerol-ph 98.5 3.9E-07 8.4E-12 78.5 8.2 62 137-201 28-116 (354)
77 TIGR01663 PNK-3'Pase polynucle 98.5 4.1E-07 8.8E-12 82.1 8.0 59 140-201 198-275 (526)
78 TIGR01533 lipo_e_P4 5'-nucleot 98.5 2.2E-06 4.7E-11 71.2 10.8 64 136-200 115-186 (266)
79 TIGR01261 hisB_Nterm histidino 98.3 1E-06 2.2E-11 67.9 6.0 63 136-201 26-115 (161)
80 TIGR01544 HAD-SF-IE haloacid d 98.3 4.5E-05 9.8E-10 63.6 15.3 76 93-183 89-167 (277)
81 PF00702 Hydrolase: haloacid d 98.2 1.6E-06 3.5E-11 68.5 5.0 58 137-198 125-187 (215)
82 smart00577 CPDc catalytic doma 98.1 2.8E-06 6E-11 64.4 4.4 57 136-193 42-103 (148)
83 KOG3109 Haloacid dehalogenase- 98.1 2.6E-05 5.7E-10 62.3 9.9 63 136-199 97-170 (244)
84 PF12689 Acid_PPase: Acid Phos 98.1 2.8E-06 6E-11 65.9 4.0 63 136-200 42-118 (169)
85 KOG3120 Predicted haloacid deh 98.0 8.2E-06 1.8E-10 65.2 5.4 51 136-187 81-135 (256)
86 PRK06769 hypothetical protein; 98.0 8E-06 1.7E-10 63.5 4.9 63 138-201 27-105 (173)
87 KOG1615 Phosphoserine phosphat 98.0 6.4E-05 1.4E-09 59.1 9.4 65 135-200 84-169 (227)
88 PLN02645 phosphoglycolate phos 97.9 2.2E-05 4.8E-10 66.7 6.7 48 139-187 44-97 (311)
89 PRK00192 mannosyl-3-phosphogly 97.9 2E-05 4.4E-10 65.4 6.0 32 149-181 34-65 (273)
90 PF12710 HAD: haloacid dehalog 97.9 6.7E-05 1.5E-09 58.3 8.3 36 142-178 92-130 (192)
91 PHA02530 pseT polynucleotide k 97.9 1.8E-05 3.9E-10 66.4 5.1 63 137-200 185-262 (300)
92 TIGR02244 HAD-IG-Ncltidse HAD 97.9 4.5E-05 9.7E-10 65.5 7.2 60 132-193 177-246 (343)
93 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.7 9.3E-05 2E-09 60.8 6.5 38 149-187 30-70 (249)
94 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.7 5.9E-05 1.3E-09 61.6 4.7 53 136-189 21-79 (242)
95 TIGR01452 PGP_euk phosphoglyco 97.7 0.00012 2.6E-09 61.1 6.4 37 149-186 31-70 (279)
96 PRK15126 thiamin pyrimidine py 97.6 0.00014 3E-09 60.3 5.7 17 1-17 1-17 (272)
97 PRK10513 sugar phosphate phosp 97.6 0.00026 5.6E-09 58.4 7.2 35 149-184 33-67 (270)
98 PRK01158 phosphoglycolate phos 97.5 0.00017 3.7E-09 58.0 5.7 16 2-17 3-18 (230)
99 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.5 0.00012 2.5E-09 60.6 4.6 45 141-186 23-73 (257)
100 PRK10444 UMP phosphatase; Prov 97.5 0.0002 4.2E-09 59.0 5.9 16 2-17 1-16 (248)
101 PRK10976 putative hydrolase; P 97.5 0.00018 4E-09 59.2 5.5 17 1-17 1-17 (266)
102 PRK10530 pyridoxal phosphate ( 97.4 0.00032 7E-09 57.7 6.2 17 1-17 2-18 (272)
103 COG0647 NagD Predicted sugar p 97.4 0.00018 4E-09 59.8 4.1 49 139-187 24-78 (269)
104 COG4996 Predicted phosphatase 97.3 0.00024 5.1E-09 52.5 3.0 50 136-186 38-90 (164)
105 TIGR02726 phenyl_P_delta pheny 97.3 0.00046 9.9E-09 53.6 4.8 49 147-201 45-93 (169)
106 TIGR01668 YqeG_hyp_ppase HAD s 97.3 0.00076 1.7E-08 52.2 6.1 58 137-201 41-103 (170)
107 COG4359 Uncharacterized conser 97.3 0.007 1.5E-07 47.4 11.1 40 135-175 69-111 (220)
108 COG0561 Cof Predicted hydrolas 97.2 0.00062 1.3E-08 56.0 5.5 29 149-178 33-61 (264)
109 TIGR01487 SPP-like sucrose-pho 97.2 0.00073 1.6E-08 53.9 5.6 28 150-178 32-59 (215)
110 PF06941 NT5C: 5' nucleotidase 97.2 0.00062 1.3E-08 53.6 5.1 53 135-187 69-131 (191)
111 TIGR02250 FCP1_euk FCP1-like p 97.2 0.00063 1.4E-08 52.1 4.9 53 136-189 55-111 (156)
112 TIGR01456 CECR5 HAD-superfamil 97.2 0.00031 6.7E-09 59.9 3.2 14 4-17 2-15 (321)
113 PRK12702 mannosyl-3-phosphogly 97.1 0.001 2.2E-08 56.0 5.8 30 149-179 31-60 (302)
114 TIGR01675 plant-AP plant acid 97.1 0.0017 3.7E-08 52.8 6.5 50 135-186 116-171 (229)
115 TIGR02461 osmo_MPG_phos mannos 97.1 0.0013 2.9E-08 53.2 5.8 30 149-179 28-57 (225)
116 PF08645 PNK3P: Polynucleotide 97.0 0.0013 2.9E-08 50.5 4.7 58 141-201 31-109 (159)
117 smart00775 LNS2 LNS2 domain. T 96.9 0.0037 8.1E-08 47.8 7.0 32 141-172 29-66 (157)
118 TIGR02463 MPGP_rel mannosyl-3- 96.9 0.0021 4.5E-08 51.5 5.6 28 149-177 29-56 (221)
119 TIGR01460 HAD-SF-IIA Haloacid 96.9 0.0023 4.9E-08 52.2 5.8 13 5-17 1-13 (236)
120 PRK03669 mannosyl-3-phosphogly 96.8 0.0038 8.3E-08 51.7 6.8 28 149-177 37-64 (271)
121 PLN02177 glycerol-3-phosphate 96.8 0.017 3.7E-07 52.3 11.2 59 109-177 89-147 (497)
122 TIGR01670 YrbI-phosphatas 3-de 96.8 0.0024 5.2E-08 48.6 4.8 51 144-200 36-86 (154)
123 TIGR01680 Veg_Stor_Prot vegeta 96.8 0.0024 5.3E-08 53.1 5.1 49 135-185 141-195 (275)
124 TIGR00099 Cof-subfamily Cof su 96.7 0.0041 8.8E-08 50.9 5.7 14 4-17 1-14 (256)
125 COG1778 Low specificity phosph 96.7 0.0015 3.3E-08 49.7 2.8 31 149-180 48-78 (170)
126 PF08282 Hydrolase_3: haloacid 96.5 0.0064 1.4E-07 48.6 5.8 28 149-177 28-55 (254)
127 TIGR01486 HAD-SF-IIB-MPGP mann 96.5 0.0062 1.3E-07 50.0 5.7 28 150-178 30-57 (256)
128 PF05152 DUF705: Protein of un 96.2 0.024 5.3E-07 47.3 7.5 39 149-188 155-193 (297)
129 PF13344 Hydrolase_6: Haloacid 96.2 0.0075 1.6E-07 42.7 4.0 50 137-187 12-67 (101)
130 PF03767 Acid_phosphat_B: HAD 96.1 0.0017 3.8E-08 52.8 0.4 42 137-179 113-160 (229)
131 TIGR01525 ATPase-IB_hvy heavy 96.1 0.0063 1.4E-07 55.7 3.9 60 137-200 382-445 (556)
132 TIGR02251 HIF-SF_euk Dullard-l 95.8 0.021 4.5E-07 43.9 5.4 52 137-189 40-94 (162)
133 TIGR01512 ATPase-IB2_Cd heavy 95.8 0.011 2.4E-07 54.0 4.4 61 136-200 359-423 (536)
134 PLN02499 glycerol-3-phosphate 95.7 0.11 2.5E-06 46.7 10.2 38 144-186 101-138 (498)
135 COG4229 Predicted enolase-phos 95.7 0.082 1.8E-06 41.5 8.0 32 137-168 101-135 (229)
136 PRK09484 3-deoxy-D-manno-octul 95.7 0.025 5.4E-07 44.3 5.3 48 148-201 60-107 (183)
137 PTZ00174 phosphomannomutase; P 95.6 0.011 2.5E-07 48.3 3.2 23 2-24 5-27 (247)
138 PRK14502 bifunctional mannosyl 95.5 0.027 6E-07 52.5 5.6 29 149-178 446-474 (694)
139 PLN02423 phosphomannomutase 95.3 0.016 3.4E-07 47.6 3.2 24 4-27 9-32 (245)
140 TIGR01482 SPP-subfamily Sucros 95.1 0.0076 1.7E-07 48.1 0.6 17 5-21 1-17 (225)
141 PLN02887 hydrolase family prot 94.9 0.024 5.1E-07 52.3 3.4 27 1-27 307-333 (580)
142 TIGR01689 EcbF-BcbF capsule bi 94.8 0.016 3.6E-07 42.8 1.7 15 3-17 2-16 (126)
143 COG2503 Predicted secreted aci 94.7 0.11 2.3E-06 42.6 6.2 44 136-180 119-169 (274)
144 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.5 0.0039 8.5E-08 50.8 -2.4 59 141-201 140-207 (242)
145 TIGR01511 ATPase-IB1_Cu copper 94.4 0.077 1.7E-06 48.8 5.5 58 137-200 403-464 (562)
146 TIGR01670 YrbI-phosphatas 3-de 94.3 0.02 4.3E-07 43.5 1.1 16 2-17 1-16 (154)
147 PRK09484 3-deoxy-D-manno-octul 94.1 0.024 5.1E-07 44.4 1.3 15 2-16 21-35 (183)
148 TIGR01484 HAD-SF-IIB HAD-super 92.6 0.11 2.4E-06 40.7 2.9 14 4-17 1-14 (204)
149 PF03031 NIF: NLI interacting 92.4 0.049 1.1E-06 41.2 0.7 50 138-188 35-87 (159)
150 TIGR01458 HAD-SF-IIA-hyp3 HAD- 92.1 0.013 2.9E-07 48.3 -3.1 61 140-201 121-191 (257)
151 PF13344 Hydrolase_6: Haloacid 91.7 0.082 1.8E-06 37.3 1.1 13 5-17 1-13 (101)
152 PF05761 5_nucleotid: 5' nucle 91.6 0.47 1E-05 42.5 6.0 57 137-195 181-248 (448)
153 TIGR02726 phenyl_P_delta pheny 91.5 0.092 2E-06 40.7 1.3 16 2-17 7-22 (169)
154 COG0241 HisB Histidinol phosph 91.4 0.98 2.1E-05 35.5 6.9 59 139-200 31-116 (181)
155 TIGR01522 ATPase-IIA2_Ca golgi 90.2 0.59 1.3E-05 45.4 5.6 48 139-187 528-578 (884)
156 PRK10187 trehalose-6-phosphate 89.4 0.18 4E-06 41.8 1.4 14 3-16 15-28 (266)
157 TIGR01261 hisB_Nterm histidino 89.3 0.061 1.3E-06 41.3 -1.4 16 2-17 1-16 (161)
158 PRK10671 copA copper exporting 88.8 0.35 7.6E-06 46.6 3.0 57 138-199 649-709 (834)
159 TIGR00685 T6PP trehalose-phosp 88.5 0.22 4.7E-06 40.6 1.2 15 3-17 4-18 (244)
160 TIGR01452 PGP_euk phosphoglyco 88.2 0.04 8.6E-07 45.9 -3.4 60 140-201 144-214 (279)
161 TIGR02471 sucr_syn_bact_C sucr 88.1 0.24 5.1E-06 40.0 1.2 15 4-18 1-15 (236)
162 PF05822 UMPH-1: Pyrimidine 5' 88.0 3.1 6.7E-05 34.3 7.6 70 93-177 58-130 (246)
163 PF03031 NIF: NLI interacting 85.7 1 2.2E-05 34.0 3.4 15 3-17 1-15 (159)
164 TIGR01485 SPP_plant-cyano sucr 85.7 0.83 1.8E-05 37.2 3.1 12 4-15 3-14 (249)
165 PRK11033 zntA zinc/cadmium/mer 84.6 1.8 4E-05 41.2 5.3 56 139-200 568-627 (741)
166 COG3700 AphA Acid phosphatase 84.2 1.6 3.4E-05 34.4 3.8 58 136-195 111-175 (237)
167 smart00577 CPDc catalytic doma 83.6 0.65 1.4E-05 34.8 1.6 15 3-17 3-17 (148)
168 TIGR02245 HAD_IIID1 HAD-superf 83.6 0.61 1.3E-05 37.1 1.4 15 3-17 22-36 (195)
169 COG1877 OtsB Trehalose-6-phosp 82.4 0.69 1.5E-05 38.5 1.3 15 3-17 19-33 (266)
170 PF06189 5-nucleotidase: 5'-nu 82.1 4.3 9.4E-05 33.7 5.9 13 5-17 124-136 (264)
171 PLN02205 alpha,alpha-trehalose 80.2 0.97 2.1E-05 43.8 1.7 17 1-17 595-611 (854)
172 PLN02580 trehalose-phosphatase 79.5 0.97 2.1E-05 39.7 1.3 14 4-17 121-134 (384)
173 PLN03017 trehalose-phosphatase 78.7 1 2.3E-05 39.2 1.3 11 4-14 113-123 (366)
174 PRK14501 putative bifunctional 78.6 1 2.3E-05 42.7 1.3 14 3-16 493-506 (726)
175 PLN02151 trehalose-phosphatase 78.2 1.7 3.8E-05 37.7 2.5 11 4-14 100-110 (354)
176 KOG2134 Polynucleotide kinase 77.9 1.1 2.4E-05 39.1 1.2 15 3-17 76-90 (422)
177 TIGR02251 HIF-SF_euk Dullard-l 77.9 1.3 2.9E-05 33.8 1.5 15 3-17 2-16 (162)
178 PRK13762 tRNA-modifying enzyme 77.2 17 0.00036 31.1 8.2 56 138-199 141-199 (322)
179 COG0731 Fe-S oxidoreductases [ 77.2 9.1 0.0002 32.4 6.4 44 136-186 89-136 (296)
180 PF09419 PGP_phosphatase: Mito 75.0 1.6 3.4E-05 33.9 1.3 16 2-17 41-56 (168)
181 COG3882 FkbH Predicted enzyme 75.0 4.3 9.2E-05 36.7 4.0 47 149-201 268-322 (574)
182 COG2217 ZntA Cation transport 74.5 4.2 9.1E-05 38.6 4.1 59 138-200 536-597 (713)
183 PF02358 Trehalose_PPase: Treh 73.5 1.6 3.5E-05 35.2 1.0 13 6-18 1-13 (235)
184 PF08235 LNS2: LNS2 (Lipin/Ned 72.9 1.9 4.2E-05 33.0 1.3 14 4-17 1-14 (157)
185 COG2179 Predicted hydrolase of 72.5 5.8 0.00013 30.8 3.8 39 138-177 45-86 (175)
186 COG5663 Uncharacterized conser 71.7 4.4 9.5E-05 31.6 2.9 13 5-17 9-21 (194)
187 PLN02382 probable sucrose-phos 70.9 2.2 4.8E-05 37.8 1.4 14 4-17 11-24 (413)
188 TIGR01482 SPP-subfamily Sucros 70.8 7.2 0.00016 30.7 4.2 38 140-178 16-56 (225)
189 COG3769 Predicted hydrolase (H 70.4 2.5 5.4E-05 34.4 1.4 15 1-15 6-20 (274)
190 KOG2882 p-Nitrophenyl phosphat 69.7 2.3 5.1E-05 35.9 1.2 17 2-18 22-38 (306)
191 PRK06769 hypothetical protein; 69.3 2.7 5.9E-05 32.3 1.4 13 2-14 4-16 (173)
192 TIGR02250 FCP1_euk FCP1-like p 69.2 2.8 6.2E-05 31.9 1.5 16 3-18 7-22 (156)
193 PRK14010 potassium-transportin 68.3 5.3 0.00012 37.7 3.3 56 139-199 441-500 (673)
194 TIGR02471 sucr_syn_bact_C sucr 67.5 11 0.00023 30.2 4.6 36 149-186 27-62 (236)
195 PRK01122 potassium-transportin 67.2 13 0.00028 35.3 5.6 57 139-200 445-505 (679)
196 TIGR01497 kdpB K+-transporting 66.9 12 0.00026 35.5 5.3 57 139-200 446-506 (675)
197 KOG2882 p-Nitrophenyl phosphat 66.7 9.5 0.0002 32.3 4.1 41 137-177 36-81 (306)
198 cd01615 CIDE_N CIDE_N domain, 66.4 3.4 7.4E-05 27.8 1.2 14 4-17 42-55 (78)
199 TIGR01668 YqeG_hyp_ppase HAD s 65.7 3.7 7.9E-05 31.5 1.5 16 2-17 25-40 (170)
200 cd06536 CIDE_N_ICAD CIDE_N dom 65.5 3.7 8E-05 27.8 1.3 14 4-17 44-57 (80)
201 TIGR01485 SPP_plant-cyano sucr 64.4 12 0.00027 30.2 4.5 42 142-185 24-68 (249)
202 PTZ00445 p36-lilke protein; Pr 63.9 19 0.00041 29.1 5.2 61 140-201 76-173 (219)
203 COG2179 Predicted hydrolase of 63.3 4.1 8.8E-05 31.6 1.3 14 2-15 28-41 (175)
204 KOG2470 Similar to IMP-GMP spe 62.9 7.1 0.00015 34.0 2.8 39 149-187 253-293 (510)
205 COG5083 SMP2 Uncharacterized p 62.8 4 8.7E-05 36.4 1.3 16 2-17 375-390 (580)
206 PF06117 DUF957: Enterobacteri 62.8 8.7 0.00019 24.7 2.5 16 2-17 24-39 (65)
207 cd06537 CIDE_N_B CIDE_N domain 62.0 4.2 9.2E-05 27.5 1.0 14 4-17 41-54 (81)
208 cd06538 CIDE_N_FSP27 CIDE_N do 61.8 4.8 0.0001 27.2 1.3 14 4-17 41-54 (79)
209 smart00266 CAD Domains present 61.5 4.4 9.4E-05 27.0 1.0 14 4-17 40-53 (74)
210 cd06539 CIDE_N_A CIDE_N domain 61.2 4.5 9.7E-05 27.2 1.1 14 4-17 42-55 (78)
211 TIGR01116 ATPase-IIA1_Ca sarco 61.1 13 0.00028 36.5 4.6 39 139-178 537-578 (917)
212 TIGR01689 EcbF-BcbF capsule bi 61.1 33 0.00071 25.2 5.7 46 138-186 23-86 (126)
213 PTZ00445 p36-lilke protein; Pr 60.1 3.6 7.7E-05 33.2 0.5 14 2-15 43-56 (219)
214 PLN03064 alpha,alpha-trehalose 59.0 4.8 0.0001 39.4 1.2 15 3-17 592-606 (934)
215 PF05116 S6PP: Sucrose-6F-phos 58.9 5.5 0.00012 32.6 1.4 15 3-17 3-17 (247)
216 PLN03063 alpha,alpha-trehalose 58.2 5 0.00011 38.7 1.2 15 3-17 508-522 (797)
217 PF11019 DUF2608: Protein of u 57.4 32 0.00069 28.3 5.7 36 142-177 84-124 (252)
218 COG4087 Soluble P-type ATPase 56.6 14 0.00031 27.6 3.1 60 136-199 27-90 (152)
219 TIGR01456 CECR5 HAD-superfamil 55.4 9.3 0.0002 32.5 2.3 45 138-183 15-70 (321)
220 TIGR01484 HAD-SF-IIB HAD-super 51.7 20 0.00044 27.8 3.6 34 139-172 17-53 (204)
221 TIGR02244 HAD-IG-Ncltidse HAD 51.0 7.8 0.00017 33.6 1.1 16 2-17 12-27 (343)
222 TIGR01647 ATPase-IIIA_H plasma 50.6 24 0.00052 33.8 4.5 39 139-178 442-483 (755)
223 TIGR02245 HAD_IIID1 HAD-superf 49.9 33 0.0007 27.2 4.4 39 138-177 44-84 (195)
224 PF02017 CIDE-N: CIDE-N domain 49.4 10 0.00022 25.6 1.2 14 4-17 42-55 (78)
225 KOG0207 Cation transport ATPas 49.3 54 0.0012 32.1 6.4 57 139-200 723-783 (951)
226 PF08620 RPAP1_C: RPAP1-like, 48.5 6.6 0.00014 26.1 0.3 10 5-14 3-12 (73)
227 KOG1618 Predicted phosphatase 48.0 8.6 0.00019 33.0 0.9 14 4-17 37-50 (389)
228 KOG0202 Ca2+ transporting ATPa 47.3 54 0.0012 31.9 6.0 42 139-181 584-628 (972)
229 KOG3189 Phosphomannomutase [Li 47.1 8.5 0.00018 30.9 0.7 14 4-17 13-26 (252)
230 COG0241 HisB Histidinol phosph 46.9 10 0.00022 29.8 1.1 16 3-18 6-21 (181)
231 PRK15122 magnesium-transportin 45.6 43 0.00094 32.9 5.4 38 139-177 550-590 (903)
232 PHA02530 pseT polynucleotide k 45.4 13 0.00028 30.9 1.6 15 3-17 159-173 (300)
233 PTZ00174 phosphomannomutase; P 45.0 49 0.0011 26.8 5.0 34 139-172 22-58 (247)
234 PRK10517 magnesium-transportin 44.8 42 0.00091 33.0 5.2 38 139-177 550-590 (902)
235 TIGR01517 ATPase-IIB_Ca plasma 44.2 42 0.00092 33.0 5.1 39 139-178 579-620 (941)
236 KOG4549 Magnesium-dependent ph 43.9 51 0.0011 24.5 4.3 40 138-178 43-86 (144)
237 PLN02645 phosphoglycolate phos 43.2 3.2 7E-05 35.1 -2.4 49 152-201 186-242 (311)
238 COG0474 MgtA Cation transport 43.0 60 0.0013 32.0 5.9 50 138-188 546-600 (917)
239 TIGR01106 ATPase-IIC_X-K sodiu 41.9 34 0.00073 34.0 4.1 38 139-177 568-608 (997)
240 TIGR01523 ATPase-IID_K-Na pota 40.1 41 0.00088 33.7 4.3 39 139-178 646-687 (1053)
241 KOG1605 TFIIF-interacting CTD 39.8 18 0.00038 30.2 1.5 16 2-17 89-104 (262)
242 TIGR01524 ATPase-IIIB_Mg magne 39.5 42 0.00092 32.7 4.3 38 139-177 515-555 (867)
243 PRK00994 F420-dependent methyl 36.8 1.2E+02 0.0025 25.2 5.7 38 139-177 71-111 (277)
244 PLN02887 hydrolase family prot 34.8 74 0.0016 29.7 4.9 37 140-177 326-365 (580)
245 KOG2469 IMP-GMP specific 5'-nu 34.0 19 0.00042 31.8 1.0 39 149-187 211-251 (424)
246 PRK10187 trehalose-6-phosphate 33.1 49 0.0011 27.3 3.2 35 138-172 35-73 (266)
247 KOG3040 Predicted sugar phosph 31.5 78 0.0017 25.8 3.9 46 139-185 23-74 (262)
248 PF06901 FrpC: RTX iron-regula 30.7 25 0.00054 28.0 1.0 21 3-23 59-79 (271)
249 COG3769 Predicted hydrolase (H 30.2 1.6E+02 0.0034 24.3 5.4 29 149-178 36-64 (274)
250 KOG0323 TFIIF-interacting CTD 30.0 99 0.0021 29.2 4.9 53 136-189 198-254 (635)
251 TIGR01652 ATPase-Plipid phosph 29.2 71 0.0015 32.0 4.1 40 139-179 631-673 (1057)
252 TIGR01657 P-ATPase-V P-type AT 29.1 1.3E+02 0.0029 30.0 6.0 40 139-179 656-698 (1054)
253 TIGR03278 methan_mark_10 putat 28.8 2.1E+02 0.0046 25.4 6.6 24 139-162 86-113 (404)
254 PF05761 5_nucleotid: 5' nucle 27.9 31 0.00067 31.0 1.2 17 2-18 12-28 (448)
255 KOG3128 Uncharacterized conser 26.4 89 0.0019 26.1 3.5 78 93-185 106-186 (298)
256 PF09419 PGP_phosphatase: Mito 25.8 1.2E+02 0.0026 23.4 4.0 38 138-176 58-107 (168)
257 TIGR01494 ATPase_P-type ATPase 24.7 1.2E+02 0.0026 27.4 4.4 38 138-176 346-386 (499)
258 KOG2469 IMP-GMP specific 5'-nu 23.2 3E+02 0.0065 24.6 6.3 19 2-20 27-45 (424)
259 PHA03321 tegument protein VP11 23.2 6.5E+02 0.014 23.9 8.8 102 9-129 36-137 (694)
260 COG1927 Mtd Coenzyme F420-depe 23.0 2.7E+02 0.0058 22.7 5.5 41 136-177 68-111 (277)
261 COG4030 Uncharacterized protei 21.1 4.4E+02 0.0096 21.9 6.5 38 138-176 82-121 (315)
262 KOG2630 Enolase-phosphatase E- 21.1 3.8E+02 0.0082 22.1 6.1 58 127-186 112-179 (254)
263 COG4502 5'(3')-deoxyribonucleo 20.9 21 0.00045 27.1 -1.0 52 137-189 66-125 (180)
264 PF05116 S6PP: Sucrose-6F-phos 20.4 1E+02 0.0022 25.1 2.8 37 149-187 32-68 (247)
265 TIGR02109 PQQ_syn_pqqE coenzym 20.4 2.4E+02 0.0053 24.0 5.3 26 137-162 63-91 (358)
No 1
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.88 E-value=7.7e-23 Score=165.20 Aligned_cols=146 Identities=26% Similarity=0.352 Sum_probs=110.3
Q ss_pred CCceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCcc
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPS 78 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 78 (202)
|+++|+||+||||+||. +.+..+++++++++|++. .+.+++++|.+....+ ..+.....
T Consensus 3 ~~~~iiFDlDGTL~Ds~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~--~~~~~~~~-- 63 (220)
T COG0546 3 MIKAILFDLDGTLVDSA---------------EDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELI--ERLLGEAD-- 63 (220)
T ss_pred CCCEEEEeCCCccccCh---------------HHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHH--HHHhcccc--
Confidence 46899999999999999 555555666667777763 7789999999999888 66654210
Q ss_pred cccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcE
Q 028880 79 IRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRI 155 (202)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~ 155 (202)
.+ .. . ...+..++.|.+.|.+.. ...+|||+.++| +++|+++
T Consensus 64 -----------~~---~~----------------~---~~~~~~~~~~~~~~~~~~--~~~~~~gv~e~L~~L~~~g~~l 108 (220)
T COG0546 64 -----------EE---AA----------------A---ELVERLREEFLTAYAELL--ESRLFPGVKELLAALKSAGYKL 108 (220)
T ss_pred -----------ch---hH----------------H---HHHHHHHHHHHHHHHhhc--cCccCCCHHHHHHHHHhCCCeE
Confidence 00 00 0 113334445555554443 468999999999 7999999
Q ss_pred EEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 156 YIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 156 ~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+|+||+++..++..|+++ |+.++|+.++|+++. |+|++++.+..+
T Consensus 109 ~i~T~k~~~~~~~~l~~~-gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~ 157 (220)
T COG0546 109 GIVTNKPERELDILLKAL-GLADYFDVIVGGDDVPPPKPDPEPLLLLLEK 157 (220)
T ss_pred EEEeCCcHHHHHHHHHHh-CCccccceEEcCCCCCCCCcCHHHHHHHHHH
Confidence 999999999999999996 999999999996654 888888877654
No 2
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.87 E-value=2.3e-22 Score=163.21 Aligned_cols=144 Identities=23% Similarity=0.245 Sum_probs=101.4
Q ss_pred CCceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCcc
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPS 78 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 78 (202)
|.++|+|||||||+||. ..+.. +++.+++++|.+. .+.++..+|.+.+..+ +.+.+.
T Consensus 11 ~~k~viFD~DGTL~Ds~-~~~~~--------------a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~--~~~~~~---- 69 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSA-PDMLA--------------TVNAMLAARGRAPITLAQLRPVVSKGARAML--AVAFPE---- 69 (229)
T ss_pred cCCEEEEcCcCccccCH-HHHHH--------------HHHHHHHHCCCCCCCHHHHHHHhhhHHHHHH--HHHhcc----
Confidence 78999999999999999 23333 4444555566542 4566777787777666 554331
Q ss_pred cccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcE
Q 028880 79 IRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRI 155 (202)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~ 155 (202)
.+.+. ..+..+.+.+.|........+++||+.++| +++|+++
T Consensus 70 ---------~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~l 114 (229)
T PRK13226 70 ---------LDAAA--------------------------RDALIPEFLQRYEALIGTQSQLFDGVEGMLQRLECAGCVW 114 (229)
T ss_pred ---------CChHH--------------------------HHHHHHHHHHHHHHhhhhcCeeCCCHHHHHHHHHHCCCeE
Confidence 11000 111222233333333345578999999999 6889999
Q ss_pred EEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 156 YIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 156 ~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+|+||++...+...++++ |+..+|+.+++++++ |+|++++.+..+
T Consensus 115 ~i~Tn~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~ 163 (229)
T PRK13226 115 GIVTNKPEYLARLILPQL-GWEQRCAVLIGGDTLAERKPHPLPLLVAAER 163 (229)
T ss_pred EEECCCCHHHHHHHHHHc-CchhcccEEEecCcCCCCCCCHHHHHHHHHH
Confidence 999999999999999995 999999999998764 999999988764
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.86 E-value=1e-21 Score=161.33 Aligned_cols=66 Identities=11% Similarity=-0.114 Sum_probs=59.4
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
.....+|||+.++| +++|++++|+||+++..++..|+++ |+.+||+.|++++++ |+|++++.+..+
T Consensus 104 ~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 104 SEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL-GLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred HhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 34578999999999 6889999999999999999999995 999999999999875 999999987764
No 4
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.86 E-value=7e-22 Score=158.41 Aligned_cols=66 Identities=20% Similarity=0.012 Sum_probs=58.8
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
...+.++||+.++| +++|++++|+||+.+..+...|+.+ |+..+|+.++++++. |+|++++.+..+
T Consensus 78 ~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~-gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~ 150 (214)
T PRK13288 78 DELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT-GLDEFFDVVITLDDVEHAKPDPEPVLKALEL 150 (214)
T ss_pred hhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CChhceeEEEecCcCCCCCCCcHHHHHHHHH
Confidence 34578999999999 6789999999999999999999995 999999999998875 999999887653
No 5
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.85 E-value=4.4e-21 Score=157.65 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=101.7
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
+++|+|||||||+||....+..+|+.+. .++|.+. .++++..+|.+....+ +.+...
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~--------------~~~g~~~~~~~~~~~~G~~~~~~~--~~~~~~------ 59 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAF--------------AEFGVQITLEEARGPMGLGKWDHI--RALLKM------ 59 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHH--------------HHcCCCccHHHHHHhcCccHHHHH--HHHhcC------
Confidence 4789999999999997433344554433 3344322 3445566777766555 443210
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSE--NRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRI 155 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~ 155 (202)
....+ .+.+.+|. +.+++ .+....|.+.|.+.......++||+.++| +++|+++
T Consensus 60 ----------~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l 118 (253)
T TIGR01422 60 ----------PAVAE-------RWRAKFGRLPTEADI----EAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKI 118 (253)
T ss_pred ----------HHHHH-------HHHHHhCCCCCHHHH----HHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeE
Confidence 01111 12333343 22222 22233333333333345679999999999 6889999
Q ss_pred EEEcCCcHHHHHHHHHhhcCCCCCC-CEEEeCCCC----CChHHHHHHHhh
Q 028880 156 YIVTTKQSRFADALLRELAGVTIPP-DRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 156 ~IvTn~~~~~~~~~L~~~~gl~~~F-~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+|+||++...++..|+++ |+..+| +.|++++++ |+|++++.+..+
T Consensus 119 ~IvT~~~~~~~~~~l~~~-gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 119 GSTTGYTREMMDVVAPEA-ALQGYRPDYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred EEECCCcHHHHHHHHHHH-HhcCCCCceEEccccCCCCCCCHHHHHHHHHH
Confidence 999999999999999996 999996 899999875 999999887654
No 6
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.85 E-value=9.7e-21 Score=156.67 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=101.7
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPSI 79 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 79 (202)
+++|||||||||+||...++..+|+.+.+ ++|.+. .+.++.++|.+....+ +.+++..
T Consensus 24 ~k~vIFDlDGTLvDS~~~~~~~a~~~~~~--------------~~G~~~~~~e~~~~~~G~~~~~~~--~~l~~~~---- 83 (260)
T PLN03243 24 WLGVVLEWEGVIVEDDSELERKAWRALAE--------------EEGKRPPPAFLLKRAEGMKNEQAI--SEVLCWS---- 83 (260)
T ss_pred ceEEEEeCCCceeCCchHHHHHHHHHHHH--------------HcCCCCCHHHHHHHhcCCCHHHHH--HHHhccC----
Confidence 47899999999999985666666666444 344432 3345678898888777 6664311
Q ss_pred ccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEE
Q 028880 80 RKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIY 156 (202)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~ 156 (202)
.+.+. .+++.+.+...+.. .......+|||+.++| +++|++++
T Consensus 84 --------~~~~~-------------------~~~l~~~~~~~~~~-------~~~~~~~l~pg~~e~L~~L~~~g~~l~ 129 (260)
T PLN03243 84 --------RDFLQ-------------------MKRLAIRKEDLYEY-------MQGGLYRLRPGSREFVQALKKHEIPIA 129 (260)
T ss_pred --------CCHHH-------------------HHHHHHHHHHHHHH-------HHccCcccCCCHHHHHHHHHHCCCEEE
Confidence 01000 11111112222111 1123568999999999 68899999
Q ss_pred EEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 157 IVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 157 IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
|+||++...++..|+++ |+..||+.|++++++ |+|++++.+..+
T Consensus 130 I~Tn~~~~~~~~~l~~~-gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 130 VASTRPRRYLERAIEAV-GMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred EEeCcCHHHHHHHHHHc-CCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 99999999999999995 999999999999875 999999988765
No 7
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.85 E-value=6e-21 Score=153.44 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=98.0
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhcc-ceechhhHHHHHHHHHhhhCccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRP-VVETGYENLLLVRLLLEIRMPSI 79 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~ 79 (202)
+++|+|||||||+||. +.+..+|.. +++++|.+. .++... +.|.+....+ +.+++..
T Consensus 1 ~k~iiFD~DGTL~ds~-~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~g~~~~~~~--~~~~~~~---- 59 (220)
T TIGR03351 1 ISLVVLDMAGTTVDED-GLVYRALRQ--------------AVTAAGLSPTPEEVQSAWMGQSKIEAI--RALLALD---- 59 (220)
T ss_pred CcEEEEecCCCeeccC-chHHHHHHH--------------HHHHcCCCCCHHHHHHhhcCCCHHHHH--HHHHhcc----
Confidence 4789999999999999 333344433 333444432 233333 6777777766 6665422
Q ss_pred ccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhc-cCCCCCCCHHHHH---HcCCCcE
Q 028880 80 RKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWI-GANRFYPGIPDAL---KFASSRI 155 (202)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~-~~~~~~pgv~e~L---~~~g~~~ 155 (202)
|.+. ++ ..+....|.+.|.+.+. ...+++||+.++| +++|+++
T Consensus 60 -------~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~ 106 (220)
T TIGR03351 60 -------GADE----------------------AE----AQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKV 106 (220)
T ss_pred -------CCCH----------------------HH----HHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEE
Confidence 2211 11 11122222333332222 3468999999999 6789999
Q ss_pred EEEcCCcHHHHHHHHHhhcCCC--CCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 156 YIVTTKQSRFADALLRELAGVT--IPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 156 ~IvTn~~~~~~~~~L~~~~gl~--~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+|+||+....+...|+++ |+. .+|+.++++++. |+|++++.+..+
T Consensus 107 ~ivT~~~~~~~~~~l~~~-~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~ 157 (220)
T TIGR03351 107 ALTTGFDRDTAERLLEKL-GWTVGDDVDAVVCPSDVAAGRPAPDLILRAMEL 157 (220)
T ss_pred EEEeCCchHHHHHHHHHh-hhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHH
Confidence 999999999999999996 999 999999999874 999999887654
No 8
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.84 E-value=1.2e-20 Score=156.50 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=100.6
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
+++|||||||||+||....+..+|+.+. +++|.+. .++++..+|.+....+ +.+....
T Consensus 4 ~k~vIFDlDGTLiDs~~~~~~~a~~~~~--------------~~~g~~~~~~~~~~~~G~~~~~~~--~~~~~~~----- 62 (267)
T PRK13478 4 IQAVIFDWAGTTVDFGSFAPTQAFVEAF--------------AQFGVEITLEEARGPMGLGKWDHI--RALLKMP----- 62 (267)
T ss_pred eEEEEEcCCCCeecCCCccHHHHHHHHH--------------HHcCCCCCHHHHHHhcCCCHHHHH--HHHHhcH-----
Confidence 4899999999999997433344554433 3344332 3445566776655555 4442200
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSEN--RDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRI 155 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~ 155 (202)
..... +.+.+|.. .+++ .+.+..|.+.|.+.......++||+.++| +++|+++
T Consensus 63 -----------~~~~~-------~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l 120 (267)
T PRK13478 63 -----------RVAAR-------WQAVFGRLPTEADV----DALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKI 120 (267)
T ss_pred -----------HHHHH-------HHHHhCCCCCHHHH----HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEE
Confidence 11111 12233332 2222 22223333333333345678999999999 6889999
Q ss_pred EEEcCCcHHHHHHHHHhhcCCCCCC-CEEEeCCCC----CChHHHHHHHhh
Q 028880 156 YIVTTKQSRFADALLRELAGVTIPP-DRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 156 ~IvTn~~~~~~~~~L~~~~gl~~~F-~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+|+||+++..+...|+.+ |+..+| +.|++++++ |+|++++.+..+
T Consensus 121 ~I~T~~~~~~~~~~l~~~-~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 121 GSTTGYTREMMDVVVPLA-AAQGYRPDHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred EEEcCCcHHHHHHHHHHH-hhcCCCceEEEcCCcCCCCCCChHHHHHHHHH
Confidence 999999999999999995 998885 889998875 999999887654
No 9
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.83 E-value=3.1e-20 Score=160.06 Aligned_cols=144 Identities=12% Similarity=0.001 Sum_probs=103.5
Q ss_pred ceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 3 ~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
++|||||||||+||...++..+|..+.+ ++|.+. .+.++.++|.+...++ +.+++..
T Consensus 132 ~~VIFDlDGTLIDS~~~i~~~a~~~l~~--------------e~G~~~~~~e~~~~~~G~~~~~~l--~~ll~~~----- 190 (381)
T PLN02575 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQ--------------EEGKSPPPAFILRRVEGMKNEQAI--SEVLCWS----- 190 (381)
T ss_pred CEEEEcCcCcceeCHHHHHHHHHHHHHH--------------HcCCCCCHHHHHHHhcCCCHHHHH--HHHhhcc-----
Confidence 7899999999999996566667766433 344432 3345778898888877 6664311
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYI 157 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~I 157 (202)
.++.. .++ ..+.+.+.|.+.......+|||+.++| +++|++++|
T Consensus 191 -------~~~~~-------------------~e~-------l~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaI 237 (381)
T PLN02575 191 -------RDPAE-------------------LRR-------MATRKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMAL 237 (381)
T ss_pred -------CCHHH-------------------HHH-------HHHHHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEE
Confidence 00100 112 222223333333344578999999999 688999999
Q ss_pred EcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 158 VTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 158 vTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+||+.+..++..|+++ ||..||+.|++++++ |+|++++.+..+
T Consensus 238 aSn~~~~~~~~~L~~l-gL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 238 VSTRPRKTLENAIGSI-GIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred EeCCCHHHHHHHHHHc-CCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 9999999999999995 999999999999875 999999987654
No 10
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.83 E-value=9.3e-21 Score=151.29 Aligned_cols=144 Identities=20% Similarity=0.226 Sum_probs=96.6
Q ss_pred eEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCcccccc
Q 028880 5 YALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPSIRKS 82 (202)
Q Consensus 5 viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 82 (202)
|+|||||||+||. +.+..+|+.+ ++++|.+. .+.++..+|.+....+ +.+++..
T Consensus 1 viFD~DGTL~Ds~-~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~------- 56 (213)
T TIGR01449 1 VLFDLDGTLVDSA-PDIAAAVNMA--------------LAALGLPPATLARVIGFIGNGVPVLM--ERVLAWA------- 56 (213)
T ss_pred CeecCCCccccCH-HHHHHHHHHH--------------HHHCCCCCCCHHHHHHHhcccHHHHH--HHHhhcc-------
Confidence 6999999999998 3333444443 33344431 3445556677766655 5554321
Q ss_pred cCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEEEc
Q 028880 83 SVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVT 159 (202)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~IvT 159 (202)
+.+ .+.+. ..+..+.+.+.|.........++||+.++| +++|++++|+|
T Consensus 57 ----~~~--------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S 108 (213)
T TIGR01449 57 ----GQE--------------------PDAQR----VAELRKLFDRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVT 108 (213)
T ss_pred ----ccc--------------------cChHH----HHHHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEe
Confidence 110 01111 122223333444444445678999999999 68899999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 160 TKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 160 n~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
|++...++..++++ |+..+|+.+++++++ |+|+++..+..+
T Consensus 109 ~~~~~~~~~~l~~~-~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~ 153 (213)
T TIGR01449 109 NKPTPLARPLLELL-GLAKYFSVLIGGDSLAQRKPHPDPLLLAAER 153 (213)
T ss_pred CCCHHHHHHHHHHc-CcHhhCcEEEecCCCCCCCCChHHHHHHHHH
Confidence 99999999999995 999999999999875 889999887654
No 11
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.82 E-value=7.1e-21 Score=153.94 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=98.1
Q ss_pred CCceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCccc
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSI 79 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 79 (202)
|.++||||||||||||+ ++|..+|..+ ++++|.+. .+..+...|.+....+ ..+.....
T Consensus 1 ~~~avIFD~DGvLvDse-~~~~~a~~~~--------------~~~~g~~~~~~~~~~~~g~~~~~~~--~~~~~~~~--- 60 (221)
T COG0637 1 MIKAVIFDMDGTLVDSE-PLHARAWLEA--------------LKEYGIEISDEEIRELHGGGIARII--DLLRKLAA--- 60 (221)
T ss_pred CCcEEEEcCCCCcCcch-HHHHHHHHHH--------------HHHcCCCCCHHHHHHHHCCChHHHH--HHHHHHhc---
Confidence 67999999999999998 5555555553 34556543 4455555665544444 33332110
Q ss_pred ccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEE
Q 028880 80 RKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIY 156 (202)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~ 156 (202)
+... .+.....+.+. ... .......+++||+.++| +.+|++++
T Consensus 61 -------~~~~-------------------~~~~~~~~~~~---~~~-----~~~~~~~~~~pGv~~~l~~L~~~~i~~a 106 (221)
T COG0637 61 -------GEDP-------------------ADLAELERLLY---EAE-----ALELEGLKPIPGVVELLEQLKARGIPLA 106 (221)
T ss_pred -------CCcc-------------------cCHHHHHHHHH---HHH-----HhhhcCCCCCccHHHHHHHHHhcCCcEE
Confidence 0000 00001101111 111 11245689999999999 68889999
Q ss_pred EEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 157 IVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 157 IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
++||+++..++..|+.+ |+.+||+.+++++++ |+|++|+.+..+
T Consensus 107 vaS~s~~~~~~~~L~~~-gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 107 VASSSPRRAAERVLARL-GLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred EecCChHHHHHHHHHHc-cChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999995 999999999998776 999999988754
No 12
>PRK11587 putative phosphatase; Provisional
Probab=99.81 E-value=3e-20 Score=149.63 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHHhchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
|+++|+|||||||+||. ..+..+|+. +++++|.+..+....+.|.+....+ +.+.+
T Consensus 2 ~~k~viFDlDGTL~Ds~-~~~~~a~~~--------------~~~~~g~~~~~~~~~~~g~~~~~~~--~~~~~------- 57 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSL-PAVERAWSN--------------WADRHGIAPDEVLNFIHGKQAITSL--RHFMA------- 57 (218)
T ss_pred CCCEEEEcCCCCcCcCH-HHHHHHHHH--------------HHHHcCCCHHHHHHHHcCCCHHHHH--HHHhc-------
Confidence 46899999999999999 344444444 4445554332223334577666665 55532
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYI 157 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~I 157 (202)
+.+ .+++.+.+... .. |.........++||+.++| +++|++++|
T Consensus 58 ------~~~----------------------~~~~~~~~~~~-~~----~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i 104 (218)
T PRK11587 58 ------GAS----------------------EAEIQAEFTRL-EQ----IEATDTEGITALPGAIALLNHLNKLGIPWAI 104 (218)
T ss_pred ------cCC----------------------cHHHHHHHHHH-HH----HHHhhhcCceeCcCHHHHHHHHHHcCCcEEE
Confidence 111 11122222211 11 1112235678999999999 689999999
Q ss_pred EcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHh
Q 028880 158 VTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRW 200 (202)
Q Consensus 158 vTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~ 200 (202)
+||++...+...++.. |+ .+|+.+++++++ |+|++++.+..
T Consensus 105 vTn~~~~~~~~~l~~~-~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~ 149 (218)
T PRK11587 105 VTSGSVPVASARHKAA-GL-PAPEVFVTAERVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred EcCCCchHHHHHHHhc-CC-CCccEEEEHHHhcCCCCCcHHHHHHHH
Confidence 9999998888889984 98 568888888764 99999987654
No 13
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.81 E-value=4.9e-20 Score=163.68 Aligned_cols=144 Identities=14% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHH------HH-HhchhccceechhhHHHHHHHHHh
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWI------VD-QMHILRPVVETGYENLLLVRLLLE 73 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~-~~~~~~~~~g~~~~~~~~~~~l~~ 73 (202)
|+++|||||||||+||+ ..+..+|+.+. ++++ .. ..+.++..+|.+....+ +.+.+
T Consensus 240 m~k~vIFDlDGTLiDs~-~~~~~a~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~--~~l~~ 302 (459)
T PRK06698 240 MLQALIFDMDGTLFQTD-KILELSLDDTF--------------DHLRSLQLWDTVTPIDKYREIMGVPLPKVW--EALLP 302 (459)
T ss_pred hhhheeEccCCceecch-hHHHHHHHHHH--------------HHHhhhcccCCCCCHHHHHHHcCCChHHHH--HHHhh
Confidence 67899999999999999 34444554433 3332 11 13456677788777766 66543
Q ss_pred hhCcccccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhh-ccCCCCCCCHHHHH---H
Q 028880 74 IRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTW-IGANRFYPGIPDAL---K 149 (202)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~-~~~~~~~pgv~e~L---~ 149 (202)
.. +. .. .++ ....|.+.|.+.. ....++|||+.++| +
T Consensus 303 ~~-----------~~---~~------------------~~~-------~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk 343 (459)
T PRK06698 303 DH-----------SL---EI------------------REQ-------TDAYFLERLIENIKSGKGALYPNVKEIFTYIK 343 (459)
T ss_pred hc-----------ch---hH------------------HHH-------HHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHH
Confidence 11 10 00 011 1111222222221 23578999999999 6
Q ss_pred cCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC---CChHHHHHHHhh
Q 028880 150 FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG---LVLSMLLVQRWK 201 (202)
Q Consensus 150 ~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~---PkPe~l~~~~~~ 201 (202)
++|++++|+||+++..+...++.+ |+.+||+.+++++++ |||++++.+..+
T Consensus 344 ~~g~~l~IvS~~~~~~~~~~l~~~-~l~~~f~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 344 ENNCSIYIASNGLTEYLRAIVSYY-DLDQWVTETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred HCCCeEEEEeCCchHHHHHHHHHC-CcHhhcceeEecCCCCCCCCcHHHHHHHHh
Confidence 889999999999999999999995 999999999999876 899999887654
No 14
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.81 E-value=5.2e-20 Score=144.36 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=91.8
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
.++|+|||||||+||. ..+..+|..+ ++++|.+. .+.++...|.+....+ +.+.+..
T Consensus 5 ~~~viFD~DGTLiDs~-~~~~~a~~~~--------------~~~~g~~~~~~~~~~~~g~~~~~~~--~~~~~~~----- 62 (188)
T PRK10725 5 YAGLIFDMDGTILDTE-PTHRKAWREV--------------LGRYGLQFDEQAMVALNGSPTWRIA--QAIIELN----- 62 (188)
T ss_pred ceEEEEcCCCcCccCH-HHHHHHHHHH--------------HHHcCCCCCHHHHHHhcCCCHHHHH--HHHHHHh-----
Confidence 3789999999999999 3444444443 33344322 3345555666655555 5554321
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH-H-cCCCcEEEE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL-K-FASSRIYIV 158 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L-~-~~g~~~~Iv 158 (202)
+. ..+.+++.+.+...+.. .......++||+ ++| . +.+++++|+
T Consensus 63 ------~~--------------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-e~L~~L~~~~~l~I~ 108 (188)
T PRK10725 63 ------QA--------------------DLDPHALAREKTEAVKS-------MLLDSVEPLPLI-EVVKAWHGRRPMAVG 108 (188)
T ss_pred ------CC--------------------CCCHHHHHHHHHHHHHH-------HHhccCCCccHH-HHHHHHHhCCCEEEE
Confidence 11 01222222222222211 113456789975 677 2 345899999
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 159 TTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 159 Tn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
||+++..++..|+++ |+.+||+.|++++++ |+|++++.+..+
T Consensus 109 T~~~~~~~~~~l~~~-~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 109 TGSESAIAEALLAHL-GLRRYFDAVVAADDVQHHKPAPDTFLRCAQL 154 (188)
T ss_pred cCCchHHHHHHHHhC-CcHhHceEEEehhhccCCCCChHHHHHHHHH
Confidence 999999999999995 999999999999875 999999987654
No 15
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.80 E-value=7.1e-20 Score=152.50 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=58.1
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHh
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
....+++||+.++| +++|++++|+||+.+..+...|+.+ |+.++|+.+++++.+ +||++++.+..
T Consensus 138 ~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~-gl~~~F~~vi~~~~~~~k~~~~~~~l~ 206 (273)
T PRK13225 138 LPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ-GLRSLFSVVQAGTPILSKRRALSQLVA 206 (273)
T ss_pred cccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CChhheEEEEecCCCCCCHHHHHHHHH
Confidence 45678999999999 6889999999999999999999995 999999999988877 99999887644
No 16
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.80 E-value=1.2e-19 Score=146.26 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=58.1
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
.....+|||+.++| +++|++++|+||+....++..++.+ |+..+|+.+++++.+ |+|++++.+..+
T Consensus 88 ~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 88 EETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF-DLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred hcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC-cchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence 45578999999999 6889999999999999999999995 999999999998765 889988876543
No 17
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.79 E-value=1.6e-19 Score=145.29 Aligned_cols=66 Identities=8% Similarity=-0.057 Sum_probs=56.8
Q ss_pred ccCCCCCCCHHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC-EEEeCCCC----CChHHHHHHHhh
Q 028880 135 IGANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPD-RIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 135 ~~~~~~~pgv~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~-~iv~~d~~----PkPe~l~~~~~~ 201 (202)
.....++||+.++|+..+++++|+||++...++..|+.+ |+..+|+ .+++++++ |+|++++.+..+
T Consensus 84 ~~~~~~~~gv~~~L~~L~~~~~ivTn~~~~~~~~~l~~~-~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~ 154 (221)
T PRK10563 84 DSELEPIAGANALLESITVPMCVVSNGPVSKMQHSLGKT-GMLHYFPDKLFSGYDIQRWKPDPALMFHAAEA 154 (221)
T ss_pred HccCCcCCCHHHHHHHcCCCEEEEeCCcHHHHHHHHHhc-ChHHhCcceEeeHHhcCCCCCChHHHHHHHHH
Confidence 346789999999997678999999999999999999995 9999996 67777544 999999988765
No 18
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.79 E-value=1.4e-19 Score=150.68 Aligned_cols=149 Identities=23% Similarity=0.269 Sum_probs=100.3
Q ss_pred CCceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCcc
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPS 78 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 78 (202)
|+++|+|||||||+||. +.+..+++.+++++|.+. .+.++.++|.+...++ ..+++...
T Consensus 12 ~~k~viFDlDGTL~Ds~---------------~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~-- 72 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSV---------------PDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLV--RRALAGSI-- 72 (272)
T ss_pred cCCEEEEcCCCccccCH---------------HHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHH--HHHhcccc--
Confidence 67999999999999999 333334444555666543 4456677888776665 55433110
Q ss_pred cccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcE
Q 028880 79 IRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRI 155 (202)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~ 155 (202)
..++++.+. ..+..+.|.+.|... .....++||+.++| +.+|+++
T Consensus 73 ---------------------------~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~g~~e~L~~Lk~~g~~l 120 (272)
T PRK13223 73 ---------------------------DHDGVDDEL----AEQALALFMEAYADS-HELTVVYPGVRDTLKWLKKQGVEM 120 (272)
T ss_pred ---------------------------cccCCCHHH----HHHHHHHHHHHHHhc-CcCCccCCCHHHHHHHHHHCCCeE
Confidence 001111111 112222333333322 23468999999999 5789999
Q ss_pred EEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 156 YIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 156 ~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+|+||++...++..++.+ |+..+|+.++++++. |+|++++.+..+
T Consensus 121 ~ivTn~~~~~~~~~l~~~-~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 121 ALITNKPERFVAPLLDQM-KIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred EEEECCcHHHHHHHHHHc-CcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 999999999999999995 999999999998864 888888887654
No 19
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.79 E-value=1.9e-19 Score=140.55 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=54.1
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
....++||+.++| +++|++++|+||+ ..++..|+.+ |+..+|+.++++++. |+|+++..+.++
T Consensus 85 ~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~-~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 85 TGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL-GLTDYFDAIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred cCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc-ChHHHCCEeeehhhCCCCCCChHHHHHHHHH
Confidence 4578999999999 6789999999998 6688899995 999999999998764 888888877653
No 20
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.78 E-value=6.6e-19 Score=137.54 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
...++||+.++| +++|++++|+||+.. ....|+++ |+..+|+.++++++. |+|++++.+..+
T Consensus 85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~-~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL-GLIDYFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred CcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc-CcHhhCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 358999999999 688999999999753 46789995 999999999998765 999999887664
No 21
>PLN02940 riboflavin kinase
Probab=99.77 E-value=5.7e-19 Score=153.48 Aligned_cols=143 Identities=14% Similarity=0.074 Sum_probs=96.2
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
+++|+|||||||+||. ..+..+|.. +++++|.+. .+++...+|.+....+ ..+++..
T Consensus 11 ik~VIFDlDGTLvDt~-~~~~~a~~~--------------~~~~~G~~~~~~~~~~~~G~~~~~~~--~~~~~~~----- 68 (382)
T PLN02940 11 VSHVILDLDGTLLNTD-GIVSDVLKA--------------FLVKYGKQWDGREAQKIVGKTPLEAA--ATVVEDY----- 68 (382)
T ss_pred CCEEEECCcCcCCcCH-HHHHHHHHH--------------HHHHcCCCCCHHHHHHhcCCCHHHHH--HHHHHHh-----
Confidence 4789999999999999 233333333 344455432 3345566676666555 5544321
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYI 157 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~I 157 (202)
|.+ .+.+++.+.+.+. +. +. .....++||+.++| +++|++++|
T Consensus 69 ------~~~--------------------~~~~~~~~~~~~~---~~----~~-~~~~~l~pGv~elL~~Lk~~g~~l~I 114 (382)
T PLN02940 69 ------GLP--------------------CSTDEFNSEITPL---LS----EQ-WCNIKALPGANRLIKHLKSHGVPMAL 114 (382)
T ss_pred ------CCC--------------------CCHHHHHHHHHHH---HH----HH-HccCCCCcCHHHHHHHHHHCCCcEEE
Confidence 111 0122322222222 21 11 23578999999999 689999999
Q ss_pred EcCCcHHHHHHHHH-hhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 158 VTTKQSRFADALLR-ELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 158 vTn~~~~~~~~~L~-~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+||+++..+...++ .+ |+.++|+.|++++++ |+|++++.+..+
T Consensus 115 vTn~~~~~~~~~l~~~~-gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~ 162 (382)
T PLN02940 115 ASNSPRANIEAKISCHQ-GWKESFSVIVGGDEVEKGKPSPDIFLEAAKR 162 (382)
T ss_pred EeCCcHHHHHHHHHhcc-ChHhhCCEEEehhhcCCCCCCHHHHHHHHHH
Confidence 99999999988887 74 999999999999875 999999987765
No 22
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.77 E-value=1.4e-18 Score=139.73 Aligned_cols=147 Identities=26% Similarity=0.284 Sum_probs=98.5
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH--hchhccceechhhHHHHHHHHHhhhCccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ--MHILRPVVETGYENLLLVRLLLEIRMPSI 79 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 79 (202)
+++|+|||||||+||. ..+..+|..+.+ ++|.+. .+.++.++|.+...++ ..++.....
T Consensus 6 ~~~iiFD~DGTL~d~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~-- 66 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA-PDLAAAVNAALA--------------ALGLPPAGEERVRTWVGNGADVLV--ERALTWAGR-- 66 (226)
T ss_pred CcEEEEcCCcccccCH-HHHHHHHHHHHH--------------HCCCCCCCHHHHHHHhCccHHHHH--HHHHhhccC--
Confidence 5899999999999998 334446555433 233321 3345566676666655 554432100
Q ss_pred ccccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEE
Q 028880 80 RKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIY 156 (202)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~ 156 (202)
.. +.++ ..+....+.+.|.........++||+.++| +++|++++
T Consensus 67 -------~~----------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~ 113 (226)
T PRK13222 67 -------EP----------------------DEEL----LEKLRELFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLA 113 (226)
T ss_pred -------Cc----------------------cHHH----HHHHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEE
Confidence 01 1111 122223333334433344678999999999 67899999
Q ss_pred EEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 157 IVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 157 IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
|+||+....++..++.+ |+..+|+.++++++. |+|++++.+..+
T Consensus 114 i~S~~~~~~~~~~l~~~-~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 161 (226)
T PRK13222 114 VVTNKPTPFVAPLLEAL-GIADYFSVVIGGDSLPNKKPDPAPLLLACEK 161 (226)
T ss_pred EEeCCCHHHHHHHHHHc-CCccCccEEEcCCCCCCCCcChHHHHHHHHH
Confidence 99999999999999995 999999999998764 899988887654
No 23
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.76 E-value=8.2e-19 Score=139.05 Aligned_cols=62 Identities=15% Similarity=0.001 Sum_probs=54.0
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC---CChHHHHHHHhh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG---LVLSMLLVQRWK 201 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~---PkPe~l~~~~~~ 201 (202)
.+.+++.++| +++|++++|+||+++..++..|+.+ |+..+|+.+++++++ |+|+++..+..+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~-gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~ 173 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH-GLEILFPVQIWMEDCPPKPNPEPLILAAKA 173 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc-CchhhCCEEEeecCCCCCcCHHHHHHHHHH
Confidence 4566668888 6789999999999999999999995 999999999999876 999998887654
No 24
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.76 E-value=1.6e-18 Score=139.27 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=57.4
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
...+++||+.++| +++|++++|+||+....+...++++ |+..+|+.++++++. |+|++++.+..+
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 162 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL-GVRDFFDAVITSEEEGVEKPHPKIFYAALKR 162 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC-ChHHhccEEEEeccCCCCCCCHHHHHHHHHH
Confidence 3468999999999 6789999999999999999999995 999999999998765 899999887654
No 25
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.75 E-value=1.2e-18 Score=138.69 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=57.8
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
...+++||+.++| +++|++++|+||++...++..++.+ |+..+|+.++++++. |+|++++.+..+
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 143 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL-GLLPLFDHVIGSDEVPRPKPAPDIVREALRL 143 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc-CChhheeeEEecCcCCCCCCChHHHHHHHHH
Confidence 4679999999999 6889999999999999999999995 999999999998764 889999887654
No 26
>PRK09449 dUMP phosphatase; Provisional
Probab=99.74 E-value=3.5e-18 Score=137.72 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=56.3
Q ss_pred cCCCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
....++||+.++| -++|++++|+||+....++..|+++ |+..+|+.|+++++. |+|++++.+..+
T Consensus 92 ~~~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~-~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 92 EICTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERT-GLRDYFDLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred hcCccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhC-ChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence 3467999999999 1368999999999999999999995 999999999998775 999999887654
No 27
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.73 E-value=1.3e-17 Score=132.35 Aligned_cols=63 Identities=16% Similarity=0.059 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
...++||+.++| +.+|++++|+||++.. ++..|+.+ |+..+|+.|+++++. |+|++++.+..+
T Consensus 103 ~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~-~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 103 PWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEAL-GLLEYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred cceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHC-CcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 357999999999 6789999999999875 57889995 999999999998765 888888877543
No 28
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.71 E-value=5.6e-17 Score=128.39 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRW 200 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~ 200 (202)
..+++||+.++| +++|++++|+||++...++..++++ |+.++|+.|++++++ |+|++++.+..
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~ 159 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA-GLDDPFDAVLSADAVRAYKPAPQVYQLALE 159 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC-CChhhhheeEehhhcCCCCCCHHHHHHHHH
Confidence 457999999999 6789999999999999999999995 999999999999875 88998887754
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.70 E-value=4.7e-17 Score=130.60 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=55.7
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
..++++||+.++| +++ ++++|+||+....++..++.+ |+..+|+.++++++. |+|+++..+..+
T Consensus 94 ~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~-~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~ 164 (224)
T TIGR02254 94 EGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS-GLFPFFDDIFVSEDAGIQKPDKEIFNYALER 164 (224)
T ss_pred ccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC-CcHhhcCEEEEcCccCCCCCCHHHHHHHHHH
Confidence 3468999999999 466 999999999999999999995 999999999998764 888898886553
No 30
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.68 E-value=1.5e-16 Score=129.95 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=61.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH-H-cCCCcEEEEcCCcHHHHHHHHHhhcCCCCC
Q 028880 102 PVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL-K-FASSRIYIVTTKQSRFADALLRELAGVTIP 179 (202)
Q Consensus 102 ~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L-~-~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~ 179 (202)
..++.++|++.++...........+. .+.....++||+.++| . +.+++++|+||++.. ++. .||.++
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~-~gl~~~ 149 (238)
T PRK10748 81 EQAMLDAGLSAEEASAGADAAMINFA-----KWRSRIDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PEL-FGLGDY 149 (238)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH-----HHhhcCCCCccHHHHHHHHHcCCCEEEEECCCch-----HHH-CCcHHh
Confidence 44667778765543222222222221 2234578999999999 2 345999999998865 477 499999
Q ss_pred CCEEEeCCCC----CChHHHHHHHhh
Q 028880 180 PDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 180 F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
|+.|+++++. |+|+++..+..+
T Consensus 150 fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 150 FEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred hceeEecccCCcCCCcHHHHHHHHHH
Confidence 9999998765 999999886653
No 31
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.67 E-value=9.8e-17 Score=126.98 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=49.5
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC----CCCEEEeCCCC-CChHHHHHHHh
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI----PPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~----~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
.....+|||+.++| ++. ++++++||++.......++.+ ++.. +|+.++++++. |||++++.+..
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~-~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~ 141 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQF-NLNALFPGAFSEVLMCGHDESKEKLFIKAKE 141 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhC-CHHHhCCCcccEEEEeccCcccHHHHHHHHH
Confidence 45578999999999 444 578899998877666667774 7765 56788888877 99999998765
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=9e-17 Score=154.63 Aligned_cols=147 Identities=21% Similarity=0.256 Sum_probs=97.2
Q ss_pred CceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCcccc
Q 028880 2 ADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSIR 80 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 80 (202)
+++|+|||||||+||+ ..+..+|.. +++++|++. .+.++.++|.+...++ ..+.+..
T Consensus 75 ikaVIFDlDGTLiDS~-~~~~~a~~~--------------~~~~~G~~it~e~~~~~~G~~~~~~~--~~~~~~~----- 132 (1057)
T PLN02919 75 VSAVLFDMDGVLCNSE-EPSRRAAVD--------------VFAEMGVEVTVEDFVPFMGTGEANFL--GGVASVK----- 132 (1057)
T ss_pred CCEEEECCCCCeEeCh-HHHHHHHHH--------------HHHHcCCCCCHHHHHHHhCCCHHHHH--HHHHHhc-----
Confidence 4789999999999999 444444444 333445433 3445666777666655 4443211
Q ss_pred cccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEE
Q 028880 81 KSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYI 157 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~I 157 (202)
+++ +.+.++. .++.++.|.+.|... ....++||+.++| +++|++++|
T Consensus 133 ------~l~-------------------~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~pG~~elL~~Lk~~G~~l~I 182 (1057)
T PLN02919 133 ------GVK-------------------GFDPDAA---KKRFFEIYLEKYAKP--NSGIGFPGALELITQCKNKGLKVAV 182 (1057)
T ss_pred ------CCC-------------------CCCHHHH---HHHHHHHHHHHhhhc--ccCccCccHHHHHHHHHhCCCeEEE
Confidence 110 0111111 122233333333221 2235899999999 688999999
Q ss_pred EcCCcHHHHHHHHHhhcCCC-CCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 158 VTTKQSRFADALLRELAGVT-IPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 158 vTn~~~~~~~~~L~~~~gl~-~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
+||+....++..|+++ |+. .+|+.+++++++ |+|++++.+..+
T Consensus 183 vSn~~~~~~~~~L~~~-gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~ 230 (1057)
T PLN02919 183 ASSADRIKVDANLAAA-GLPLSMFDAIVSADAFENLKPAPDIFLAAAKI 230 (1057)
T ss_pred EeCCcHHHHHHHHHHc-CCChhHCCEEEECcccccCCCCHHHHHHHHHH
Confidence 9999999999999995 996 799999999876 899999887654
No 33
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.67 E-value=3e-16 Score=127.10 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=57.9
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
....++||+.++| +++|++++|+||+++..++..++++ |+.++|+.++++++. |+|++++.+..+
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~-~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT-GLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC-CcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 5578999999999 6889999999999999999999995 999999999998765 888999987654
No 34
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.67 E-value=3.9e-16 Score=122.24 Aligned_cols=64 Identities=19% Similarity=0.101 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC--------CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG--------LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~--------PkPe~l~~~~~~ 201 (202)
..+++||+.++|....++++|+||++...+...++.+ |+..+|+.|+++++. |+|++++.+..+
T Consensus 82 ~~~~~~g~~~~L~~L~~~~~i~Tn~~~~~~~~~l~~~-gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~ 153 (184)
T TIGR01993 82 KLKPDPELRNLLLRLPGRKIIFTNGDRAHARRALNRL-GIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALRE 153 (184)
T ss_pred hCCCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHc-CcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHH
Confidence 4679999999995444799999999999999999995 999999999988652 788888877654
No 35
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=2.2e-15 Score=126.31 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=49.0
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC--EEEeCCCC----CChHHHHHHHh
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD--RIYGLGTG----LVLSMLLVQRW 200 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~--~iv~~d~~----PkPe~l~~~~~ 200 (202)
++++||+.++| +.+|++++|+||++...+...++.+ +...+|+ .+++++++ |+|+++..+..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~-~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~ 213 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL-LGPERAQGLDVFAGDDVPKKKPDPDIYNLAAE 213 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh-ccccccCceEEEeccccCCCCCCHHHHHHHHH
Confidence 58999999999 6889999999999999999999884 5445554 23366654 88888887654
No 36
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.64 E-value=1.1e-16 Score=122.38 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=57.7
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
...+++||+.++| +++|++++|+||++...++..++.+ |+..+|+.++++++. |+|+.+..+..+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~-~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 145 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL-GLDDYFDEIISSDDVGSRKPDPDAYRRALEK 145 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT-THGGGCSEEEEGGGSSSSTTSHHHHHHHHHH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccc-ccccccccccccchhhhhhhHHHHHHHHHHH
Confidence 5678999999999 5789999999999999999999996 999999999998754 888999887654
No 37
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.62 E-value=3.9e-16 Score=118.67 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC---CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG---LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~---PkPe~l~~~~~~ 201 (202)
...++||+.++| +++|++++|+||+.+..+...++. . +..+|+.++++++. |+|++++.+..+
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~-~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~ 130 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRK-H-LGDYFDLILGSDEFGAKPEPEIFLAALES 130 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHH-H-HHhcCcEEEecCCCCCCcCHHHHHHHHHH
Confidence 456789999999 578999999999999999999988 4 78899999998866 899999887754
No 38
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.62 E-value=3.1e-16 Score=121.60 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
..+++||+.++|+ +++|+||++...+...++++ |+..+|+.|++++++ |+|++|+.+..+
T Consensus 88 ~~~~~~g~~~~L~----~~~i~Tn~~~~~~~~~l~~~-~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 88 NLPPWPDSAAALA----RVAILSNASHWAFDQFAQQA-GLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred cCCCCCchHHHHH----HHhhhhCCCHHHHHHHHHHC-CCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 4679999999996 59999999999999999995 999999999999874 999999887654
No 39
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.61 E-value=4.9e-16 Score=124.16 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=50.5
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHH--HHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRF--ADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRW 200 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~--~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~ 200 (202)
...+++||+.++| +++|++++|+||+.... ....+..+ ++..+|+.|+++++. |+|++++.+..
T Consensus 91 ~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~-~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 91 ENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPG-DIMALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred cccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhh-hhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 3578999999999 67899999999987543 33445564 888999999988754 88999887654
No 40
>PLN02811 hydrolase
Probab=99.55 E-value=5.7e-15 Score=119.05 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=52.6
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHH-HHHhhcCCCCCCCEEEeCC--CC----CChHHHHHHHhh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADA-LLRELAGVTIPPDRIYGLG--TG----LVLSMLLVQRWK 201 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~-~L~~~~gl~~~F~~iv~~d--~~----PkPe~l~~~~~~ 201 (202)
....++||+.++| +.+|++++|+||+.+..... .++.. ++.++|+.+++++ ++ |+|++++.+..+
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~-~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~ 149 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHG-ELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARR 149 (220)
T ss_pred hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccH-HHHhhCCEEEECChhhccCCCCCcHHHHHHHHH
Confidence 3468999999999 68899999999998765543 44443 7889999999998 54 999999887654
No 41
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.54 E-value=4.9e-15 Score=119.28 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=97.6
Q ss_pred ceeEeecCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHH-hchhccceechhhHHHHHHHHHhhhCccccc
Q 028880 3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQ-MHILRPVVETGYENLLLVRLLLEIRMPSIRK 81 (202)
Q Consensus 3 ~~viFD~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 81 (202)
.+++||+||||+||+..|+. +.+..+.++|... .+.....+|.+..++. +.+....
T Consensus 11 ~~~lfD~dG~lvdte~~y~~---------------~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa--~~~~~~~------ 67 (222)
T KOG2914|consen 11 SACLFDMDGTLVDTEDLYTE---------------AWQELLDRYGKPYPWDVKVKSMGKRTSEAA--RLFVKKL------ 67 (222)
T ss_pred eeEEEecCCcEEecHHHHHH---------------HHHHHHHHcCCCChHHHHHHHcCCCHHHHH--HHHHhhc------
Confidence 57999999999999944432 2222344555422 4445567787777766 5554211
Q ss_pred ccCCCCCCHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEEE
Q 028880 82 SSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIV 158 (202)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~Iv 158 (202)
+ + ..+.+++....++....+ .....++||+..++ +..|+|++++
T Consensus 68 -----~-------d-------------p~s~ee~~~e~~~~~~~~--------~~~~~~~PGa~kLv~~L~~~gip~ala 114 (222)
T KOG2914|consen 68 -----P-------D-------------PVSREEFNKEEEEILDRL--------FMNSILMPGAEKLVNHLKNNGIPVALA 114 (222)
T ss_pred -----C-------C-------------CCCHHHHHHHHHHHHHHh--------ccccccCCcHHHHHHHHHhCCCCeeEE
Confidence 0 0 124555555555444443 35678999999999 6899999999
Q ss_pred cCCcHHHHHHHHHhhcC-CCCCCCEEEeCCC--C----CChHHHHHHHh
Q 028880 159 TTKQSRFADALLRELAG-VTIPPDRIYGLGT--G----LVLSMLLVQRW 200 (202)
Q Consensus 159 Tn~~~~~~~~~L~~~~g-l~~~F~~iv~~d~--~----PkPe~l~~~~~ 200 (202)
||+.+......+..+ + +...|+.++.+++ + |+|++|+.++.
T Consensus 115 t~s~~~~~~~k~~~~-~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~ 162 (222)
T KOG2914|consen 115 TSSTSASFELKISRH-EDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAK 162 (222)
T ss_pred ecCCcccHHHHHHHh-hHHHHhcCCCeecCCccccCCCCCchHHHHHHH
Confidence 999999999999997 6 7788988776432 3 99999998875
No 42
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.51 E-value=1.7e-13 Score=106.36 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
.+++||+.++| +++|++++|+||+.... ...+.++ |+..+|+.++++++. |+|++++.+..+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~-~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQEL-GLRDLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhc-CCHHHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 68999999999 57899999999999988 7777775 999999999987654 888899887654
No 43
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.46 E-value=3.8e-13 Score=106.73 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=52.5
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
.++||+.++| +++|++++|+||++.......+....++..+|+.++++++. |+|++++.+..+
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~ 153 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQA 153 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHH
Confidence 5899999999 68899999999999887766665423788999999998765 999999987654
No 44
>PLN02954 phosphoserine phosphatase
Probab=99.44 E-value=3.9e-13 Score=108.23 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC--CCCCE---------EEeCCC------C-CChHHHH
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT--IPPDR---------IYGLGT------G-LVLSMLL 196 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~--~~F~~---------iv~~d~------~-PkPe~l~ 196 (202)
..++||+.++| +++|++++|+||+....++..++.+ |+. .+|.. +++.+. . |||++++
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-GIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-CCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 56899999999 6889999999999999999999996 997 45642 222211 1 7999998
Q ss_pred HHHhh
Q 028880 197 VQRWK 201 (202)
Q Consensus 197 ~~~~~ 201 (202)
.++.+
T Consensus 162 ~~~~~ 166 (224)
T PLN02954 162 HIKKK 166 (224)
T ss_pred HHHHH
Confidence 87654
No 45
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=104.65 Aligned_cols=63 Identities=19% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~~ 201 (202)
..+++|++.++| +.+ ++++|+||+....+...|+.+ ||.++||.|+.+++. |+|++|..+..+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-GLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-CChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 478999999999 233 889999999999999999995 999999999998775 899999887654
No 46
>PRK11590 hypothetical protein; Provisional
Probab=99.41 E-value=6.9e-13 Score=106.44 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=39.3
Q ss_pred CCCCCCHHHHH-H---cCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 138 NRFYPGIPDAL-K---FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 138 ~~~~pgv~e~L-~---~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
..+|||+.++| + +.|++++||||++...++..+..+ |+.. .+.++|++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l-~~~~-~~~~i~t~ 145 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT-PWLP-RVNLIASQ 145 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc-cccc-cCceEEEE
Confidence 57799999999 2 479999999999999999999995 8633 55566654
No 47
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.41 E-value=4.8e-13 Score=105.53 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=43.3
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
...+++||+.++| +++|++++|+||+....++..++.+ |+..+|...+..
T Consensus 77 ~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g~~~~~~~~~~~ 129 (201)
T TIGR01491 77 KEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-NPDYVYSNELVF 129 (201)
T ss_pred HhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-CCCeEEEEEEEE
Confidence 3468999999999 6789999999999999999999996 998888765554
No 48
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.39 E-value=5.9e-13 Score=108.61 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=51.7
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCC----cHHHHHHHHHhhcCCCCCCCEEEeCCCC--CChHHHH
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTK----QSRFADALLRELAGVTIPPDRIYGLGTG--LVLSMLL 196 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~----~~~~~~~~L~~~~gl~~~F~~iv~~d~~--PkPe~l~ 196 (202)
.....|++++.++| +++|++++|+||+ ....++.+++.+ |+.++|+.++++++. |||++..
T Consensus 110 ~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-Gi~~~f~~i~~~d~~~~~Kp~~~~ 179 (237)
T TIGR01672 110 DEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-HIPAMNPVIFAGDKPGQYQYTKTQ 179 (237)
T ss_pred ccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-CCchheeEEECCCCCCCCCCCHHH
Confidence 44567888899999 6899999999998 667889999995 999999999999876 6777654
No 49
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.39 E-value=9e-13 Score=105.75 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEE-------e----CCCC---CChHHHHHHH
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY-------G----LGTG---LVLSMLLVQR 199 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv-------~----~d~~---PkPe~l~~~~ 199 (202)
..+++||+.++| +++|++++|+||+....+...++.+ |+..+|...+ . +... |||+++..+.
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-GLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 457999999999 6789999999999999999999995 9999885321 1 1111 6999988764
Q ss_pred h
Q 028880 200 W 200 (202)
Q Consensus 200 ~ 200 (202)
.
T Consensus 162 ~ 162 (219)
T TIGR00338 162 R 162 (219)
T ss_pred H
Confidence 4
No 50
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.36 E-value=6.5e-12 Score=97.95 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=54.2
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCC-----------------------C-C
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-----------------------G-L 190 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~-----------------------~-P 190 (202)
.+++||+.++| +++|++++|+||+....++..++.+ |+..+|+.|++++. + +
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI-GEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc-CChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 68999999999 6889999999999999999999995 99999999997532 1 6
Q ss_pred ChHHHHHHHhh
Q 028880 191 VLSMLLVQRWK 201 (202)
Q Consensus 191 kPe~l~~~~~~ 201 (202)
||+++..++.+
T Consensus 150 K~~~~~~~~~~ 160 (188)
T TIGR01489 150 KGKVIHKLSEP 160 (188)
T ss_pred HHHHHHHHHhh
Confidence 88888887653
No 51
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.33 E-value=2.9e-12 Score=103.21 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=35.6
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
...+++||+.++| +++|++++|+||+....++..|++ . +.
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~-~-~~ 113 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQG-L-IP 113 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHH-h-CC
Confidence 3478999999999 689999999999999999999998 4 54
No 52
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.19 E-value=2.3e-11 Score=90.24 Aligned_cols=62 Identities=16% Similarity=-0.062 Sum_probs=54.2
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCC-cHHHHHHHHHhhcC-------CCCCCCEEEeCCCCCChHHHHHHHhh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTK-QSRFADALLRELAG-------VTIPPDRIYGLGTGLVLSMLLVQRWK 201 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~-~~~~~~~~L~~~~g-------l~~~F~~iv~~d~~PkPe~l~~~~~~ 201 (202)
++|||+.++| +++|++++|+||+ ....+...++.+ + +.++|+.+++++..|||++++.+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~ 101 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-EDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALK 101 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cccccchhhHhhhhhhhhcCCCcHHHHHHHHHHH
Confidence 5788989888 6889999999999 888888999994 8 89999999988766999999987765
No 53
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.15 E-value=3.1e-11 Score=94.14 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=48.0
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCC-cHHHHHHHHHhhcCCC---------CCCCEEEeCCCC
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTK-QSRFADALLRELAGVT---------IPPDRIYGLGTG 189 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~-~~~~~~~~L~~~~gl~---------~~F~~iv~~d~~ 189 (202)
..+++|||+.++| +++|++++|+||+ ....++..|+.+ |+. ++|+.+++++..
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~-~l~~~~~~~~~~~~Fd~iv~~~~~ 107 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTF-EITYAGKTVPMHSLFDDRIEIYKP 107 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhC-CcCCCCCcccHHHhceeeeeccCC
Confidence 4578999999999 6899999999998 888999999995 998 999999999776
No 54
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.13 E-value=7.9e-10 Score=87.69 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=39.7
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCE
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR 182 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~ 182 (202)
...+++||+.++| +++ ++++|+||+....++..++++ |+..+|+.
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~-gl~~~f~~ 112 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL-GWPTLFCH 112 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc-CCchhhcc
Confidence 4568999999999 566 999999999999999999995 99988864
No 55
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.01 E-value=1.1e-09 Score=91.19 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=39.9
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----CChHH
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----LVLSM 194 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~ 194 (202)
+++|++++|+||+.+..+...|+.+ |+..+|+.|+++++. |+|+.
T Consensus 159 kekGikLaIaTS~~Re~v~~~L~~l-GLd~YFdvIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 159 KKRGCILVLWSYGDRDHVVESMRKV-KLDRYFDIIISGGHKAEEYSTMST 207 (301)
T ss_pred HHCCCEEEEEECCCHHHHHHHHHHc-CCCcccCEEEECCccccCCCCccc
Confidence 5889999999999999999999995 999999999998876 55543
No 56
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.00 E-value=8.8e-09 Score=82.72 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCCCCCHHHHH----HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 138 NRFYPGIPDAL----KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 138 ~~~~pgv~e~L----~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
..+|||+.++| +++|++++||||++...++...+.. ++.. .+.++|.+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~-~~~~-~~~~i~t~ 144 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS-NFIH-RLNLIASQ 144 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc-cccc-cCcEEEEE
Confidence 57899999999 2479999999999999999999883 6644 24455543
No 57
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.99 E-value=2.4e-09 Score=91.20 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=50.0
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC-------EEE----eCCCC---CChHHHHHH
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD-------RIY----GLGTG---LVLSMLLVQ 198 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~-------~iv----~~d~~---PkPe~l~~~ 198 (202)
...+++||+.++| ++.|++++|+||+....++..++.+ |+...+. ..+ .++.+ |||+.+..+
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-gld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~l 256 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-RLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRL 256 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-CCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHH
Confidence 3468999999999 6899999999999999999999995 9876442 111 12222 999999988
Q ss_pred Hhh
Q 028880 199 RWK 201 (202)
Q Consensus 199 ~~~ 201 (202)
+.+
T Consensus 257 a~~ 259 (322)
T PRK11133 257 AQE 259 (322)
T ss_pred HHH
Confidence 754
No 58
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.98 E-value=4e-09 Score=85.31 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=52.4
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhc---CCCCCCCEEEeCCCC--CChHHHHHHHhh
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELA---GVTIPPDRIYGLGTG--LVLSMLLVQRWK 201 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~---gl~~~F~~iv~~d~~--PkPe~l~~~~~~ 201 (202)
....++|||+.++| +++|++++|+||++...++..++. . +|..+|+.++....+ |+|++|..+..+
T Consensus 91 ~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~-~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~ 164 (220)
T TIGR01691 91 ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGH-SDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQ 164 (220)
T ss_pred CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhh-ccccchhhhcceEEEeCcccCCCHHHHHHHHHH
Confidence 45578999999999 688999999999999988888877 3 566778776654333 999999887643
No 59
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.96 E-value=1.2e-09 Score=80.89 Aligned_cols=60 Identities=35% Similarity=0.419 Sum_probs=47.1
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCc--------HHHHHHHHHhhcCCCCCCCEEEeCCCC--CChHHHHHHHhh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQ--------SRFADALLRELAGVTIPPDRIYGLGTG--LVLSMLLVQRWK 201 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~--------~~~~~~~L~~~~gl~~~F~~iv~~d~~--PkPe~l~~~~~~ 201 (202)
.++||+.++| +++|++++|+||++ ...++..++.+ |+. |+.++.+... |+|+++..+..+
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~l~--~~~~~~~~~~~KP~~~~~~~~~~~ 97 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-GVP--IDVLYACPHCRKPKPGMFLEALKR 97 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-CCC--EEEEEECCCCCCCChHHHHHHHHH
Confidence 5789999988 68999999999999 88899999995 986 3333333322 999999887654
No 60
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.95 E-value=2.6e-09 Score=85.73 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCC---CEEEeCCCC----CChHH
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP---DRIYGLGTG----LVLSM 194 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F---~~iv~~d~~----PkPe~ 194 (202)
..+++||+.++| +++|++++|+||+....++.+++.+ +...+| +.+++++.. |+|++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~~p~~~~ 134 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI-VEKDRIYCNEADFSNEYIHIDWPHPCD 134 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh-CCcccEEeceeEeeCCeeEEeCCCCCc
Confidence 468999999999 6889999999999999999999985 665554 334444432 66554
No 61
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.94 E-value=6.1e-09 Score=83.24 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD 181 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~ 181 (202)
..+++||+.++| ++. .+++|+||+....+..+++.+ |+..+|.
T Consensus 66 ~i~l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~l-gi~~~~a 111 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQL-GFPTLLC 111 (203)
T ss_pred hCCCCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHHc-CCchhhc
Confidence 468999999999 344 599999999999999999996 9998885
No 62
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.93 E-value=1.5e-08 Score=78.29 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=41.2
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEE
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY 184 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv 184 (202)
...+++||+.++| +++|++++|+|++....++..++.+ |+..+|...+
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~-g~~~~~~~~~ 120 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-GIDDVFANRL 120 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCchheeeeE
Confidence 4467899999999 5889999999999999999999996 9988775433
No 63
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.93 E-value=2.1e-08 Score=79.34 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCE
Q 028880 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR 182 (202)
Q Consensus 109 g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~ 182 (202)
|++.+++....++..+.+. ...++||+.++| +++|++++|+||+....++..++.+ |+..+|..
T Consensus 66 g~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g~~~~~~~ 132 (202)
T TIGR01490 66 GLLEEDVRAIVEEFVNQKI---------ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-GIDNAIGT 132 (202)
T ss_pred CCCHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-CCcceEec
Confidence 6666666555544433322 247899999999 5789999999999999999999995 99988754
No 64
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.90 E-value=4.5e-09 Score=81.45 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHH------------HHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHH
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSR------------FADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQR 199 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~------------~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~ 199 (202)
.+|||+.++| +++|++++|+||++.. .++..|+.+ |+. ++.+++++.. |+|++++.+.
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-gl~--~~~ii~~~~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-KVP--IQVLAATHAGLYRKPMTGMWEYLQ 118 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-CCC--EEEEEecCCCCCCCCccHHHHHHH
Confidence 3799999999 6899999999998863 467889995 984 3566665543 8889998876
Q ss_pred hh
Q 028880 200 WK 201 (202)
Q Consensus 200 ~~ 201 (202)
.+
T Consensus 119 ~~ 120 (166)
T TIGR01664 119 SQ 120 (166)
T ss_pred HH
Confidence 54
No 65
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.88 E-value=3e-09 Score=80.59 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcH---------------HHHHHHHHhhcCCCCC--CCEEEe-CCCC----CChH
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIP--PDRIYG-LGTG----LVLS 193 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~---------------~~~~~~L~~~~gl~~~--F~~iv~-~d~~----PkPe 193 (202)
+++||+.++| +++|++++|+||+++ ..+...++++ |+... |..+.+ ++.. |+|+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL-GVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC-CCceeEEEECCCCCCCCCCCCCCCHH
Confidence 5899999999 789999999999884 4667788885 98621 111111 3332 9999
Q ss_pred HHHHHHhh
Q 028880 194 MLLVQRWK 201 (202)
Q Consensus 194 ~l~~~~~~ 201 (202)
+++.+..+
T Consensus 106 ~~~~~~~~ 113 (147)
T TIGR01656 106 LILEALKR 113 (147)
T ss_pred HHHHHHHH
Confidence 99988654
No 66
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.85 E-value=1.5e-08 Score=82.76 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=45.5
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCC----cHHHHHHHHHhhcCC--CCCCCEEEeCCCC
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTK----QSRFADALLRELAGV--TIPPDRIYGLGTG 189 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~----~~~~~~~~L~~~~gl--~~~F~~iv~~d~~ 189 (202)
.....|+||+.++| +++|++++++||+ ....++.+++.+ |+ .++|+.+++++..
T Consensus 110 ~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-gip~~~~f~vil~gd~~ 172 (237)
T PRK11009 110 DEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-HIPADNMNPVIFAGDKP 172 (237)
T ss_pred cccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-CCCcccceeEEEcCCCC
Confidence 45678999999999 5899999999995 455778888885 99 8999999998765
No 67
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.82 E-value=1.3e-08 Score=79.66 Aligned_cols=61 Identities=26% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcH---------------HHHHHHHHhhcCCCCCCCEEEeC-----CCC----C
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIPPDRIYGL-----GTG----L 190 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~---------------~~~~~~L~~~~gl~~~F~~iv~~-----d~~----P 190 (202)
..++||+.++| +++|++++|+||++. +.+...++++ |+ +|+.++.+ +.. |
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~--~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADR-GG--RLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc-CC--ccceEEECCCCCCCCCcCCCC
Confidence 35899999999 688999999999973 3445567774 77 48877653 222 9
Q ss_pred ChHHHHHHHhh
Q 028880 191 VLSMLLVQRWK 201 (202)
Q Consensus 191 kPe~l~~~~~~ 201 (202)
+|+++..+..+
T Consensus 105 ~p~~~~~~~~~ 115 (181)
T PRK08942 105 KPGMLLSIAER 115 (181)
T ss_pred CHHHHHHHHHH
Confidence 99999887653
No 68
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.82 E-value=2.4e-08 Score=77.84 Aligned_cols=61 Identities=31% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcH---------------HHHHHHHHhhcCCCCCCCEEEeC-----------CC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIPPDRIYGL-----------GT 188 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~---------------~~~~~~L~~~~gl~~~F~~iv~~-----------d~ 188 (202)
..++||+.++| +++|++++|+||++. ..+...+..+ ++. |+.++.+ ++
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~i~~~~~~~~~~~~~~~~ 101 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAER-DVD--LDGIYYCPHHPEGVEEFRQV 101 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc-CCC--ccEEEECCCCCcccccccCC
Confidence 35899999999 689999999999984 4455677774 776 7776542 12
Q ss_pred C----CChHHHHHHHhh
Q 028880 189 G----LVLSMLLVQRWK 201 (202)
Q Consensus 189 ~----PkPe~l~~~~~~ 201 (202)
. |+|++++.+..+
T Consensus 102 ~~~~KP~p~~~~~a~~~ 118 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKE 118 (176)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 2 999999988765
No 69
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.81 E-value=1.8e-08 Score=82.05 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=45.3
Q ss_pred cCCCCCCCHHHHH----H-cCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 136 GANRFYPGIPDAL----K-FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 136 ~~~~~~pgv~e~L----~-~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
...++.||+.+++ + +.|+.+.|+|.+..-+++.+|+++ |+...|+.|++..
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-gl~~~f~~I~TNp 123 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-GLRDCFSEIFTNP 123 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-CCccccceEEeCC
Confidence 4678999999999 2 468999999999999999999995 9999999998864
No 70
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.80 E-value=1.6e-08 Score=84.41 Aligned_cols=40 Identities=15% Similarity=-0.036 Sum_probs=37.0
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG 189 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~ 189 (202)
+++|++++|+||++++.+...|+.+ |+..+|+.|+|+++.
T Consensus 161 kekGikLaIvTNg~Re~v~~~Le~l-gL~~yFDvII~~g~i 200 (303)
T PHA03398 161 KERGCVLVLWSYGNREHVVHSLKET-KLEGYFDIIICGGRK 200 (303)
T ss_pred HHCCCEEEEEcCCChHHHHHHHHHc-CCCccccEEEECCCc
Confidence 6899999999999999999999995 999999999998875
No 71
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.75 E-value=1.1e-07 Score=76.60 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=42.3
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
.+++||+.+++ ++.|.+++|+|++....++.+.+.+ |++..+......
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l-g~d~~~an~l~~ 126 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL-GIDYVVANELEI 126 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh-CCchheeeEEEE
Confidence 68999999999 7999999999999999999999996 999888654433
No 72
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.65 E-value=4.5e-08 Score=83.40 Aligned_cols=61 Identities=8% Similarity=-0.124 Sum_probs=51.9
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHh----hcCCCCCCCEEEeCCCCCChHHHHHHHhh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRE----LAGVTIPPDRIYGLGTGLVLSMLLVQRWK 201 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~----~~gl~~~F~~iv~~d~~PkPe~l~~~~~~ 201 (202)
.+|||+.++| +++|++++|+||+....+...|++ + ++.++|+.+.++-. |||+.++.+..+
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~-~~~~~f~~~~~~~~-pk~~~i~~~~~~ 98 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFI-LQAEDFDARSINWG-PKSESLRKIAKK 98 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCcccc-CcHHHeeEEEEecC-chHHHHHHHHHH
Confidence 3578888888 689999999999999999999999 7 89999999877632 999999987653
No 73
>PRK08238 hypothetical protein; Validated
Probab=98.64 E-value=2.9e-07 Score=82.37 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=43.5
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG 189 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~ 189 (202)
.+++||+.++| +++|++++|+||+++..++..++++ |+ |+.+++++++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-Gl---Fd~Vigsd~~ 121 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-GL---FDGVFASDGT 121 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC---CCEEEeCCCc
Confidence 46789999999 6899999999999999999999995 88 9999999865
No 74
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.62 E-value=2.6e-07 Score=75.14 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=50.8
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCC-C---CChHHHHHHHh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-G---LVLSMLLVQRW 200 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~-~---PkPe~l~~~~~ 200 (202)
.....+|+.++| +..|..++|+||-+... +..+..+ |+..+||+++.|.. + |+|.+|+.+-+
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l~~~-~l~~~fD~vv~S~e~g~~KPDp~If~~al~ 179 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRL-RLLLLPL-GLSAYFDFVVESCEVGLEKPDPRIFQLALE 179 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHHH-HHHhhcc-CHHHhhhhhhhhhhhccCCCChHHHHHHHH
Confidence 456788888888 68999999999999774 4888894 99999999887644 4 99999988754
No 75
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.57 E-value=2.5e-07 Score=67.16 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=43.1
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT 188 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~ 188 (202)
..++||+.++| +++|++++|+||+....++..++.+ |+..+|+.+++++.
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~-~~~~~~~~i~~~~~ 75 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL-GLDDYFDPVITSNG 75 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc-CCchhhhheeccch
Confidence 46788888888 5779999999999999999999995 99888998887654
No 76
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.52 E-value=3.9e-07 Score=78.54 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCC---------------cHHHHHHHHHhhcCCCCCCCEE-Ee----CCCC----
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTK---------------QSRFADALLRELAGVTIPPDRI-YG----LGTG---- 189 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~---------------~~~~~~~~L~~~~gl~~~F~~i-v~----~d~~---- 189 (202)
...+|||+.++| +++|++++|+||+ +...+..+++.+ |+. |+.+ ++ +++.
T Consensus 28 ~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~-gl~--fd~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ-GIK--FDEVLICPHFPEDNCSCRK 104 (354)
T ss_pred cceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc-CCc--eeeEEEeCCcCcccCCCCC
Confidence 367999999999 6899999999996 355677788885 883 7765 44 2332
Q ss_pred CChHHHHHHHhh
Q 028880 190 LVLSMLLVQRWK 201 (202)
Q Consensus 190 PkPe~l~~~~~~ 201 (202)
|+|++++.+..+
T Consensus 105 P~p~~l~~a~~~ 116 (354)
T PRK05446 105 PKTGLVEEYLAE 116 (354)
T ss_pred CCHHHHHHHHHH
Confidence 999999887653
No 77
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.49 E-value=4.1e-07 Score=82.11 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=49.0
Q ss_pred CCCCHHHHH---HcCCCcEEEEcCCcH------------HHHHHHHHhhcCCCCCCCEEEeCCCC----CChHHHHHHHh
Q 028880 140 FYPGIPDAL---KFASSRIYIVTTKQS------------RFADALLRELAGVTIPPDRIYGLGTG----LVLSMLLVQRW 200 (202)
Q Consensus 140 ~~pgv~e~L---~~~g~~~~IvTn~~~------------~~~~~~L~~~~gl~~~F~~iv~~d~~----PkPe~l~~~~~ 200 (202)
+||||.+.| ++.|++++|+||.+. ..+..+|+.+ |+. |+.+++.+.. |+|.+++.+..
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-gip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-GVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-CCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 689999999 689999999999877 4578889995 884 8988887654 99999988765
Q ss_pred h
Q 028880 201 K 201 (202)
Q Consensus 201 ~ 201 (202)
+
T Consensus 275 ~ 275 (526)
T TIGR01663 275 E 275 (526)
T ss_pred h
Confidence 3
No 78
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.45 E-value=2.2e-06 Score=71.22 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=50.6
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHH---HHHHHHHhhcCCCCC-CCEEEeCCCC-CChHHHHHHHh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIP-PDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~---~~~~~L~~~~gl~~~-F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
....++||+.++| +.+|++++++||++.. .+...|+++ |+... ++.++..++. +||+....+..
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~-Gi~~~~~d~lllr~~~~~K~~rr~~I~~ 186 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRF-GFPQADEEHLLLKKDKSSKESRRQKVQK 186 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHc-CcCCCCcceEEeCCCCCCcHHHHHHHHh
Confidence 4578999999999 5899999999998744 455888895 99764 4677777666 89988877754
No 79
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.35 E-value=1e-06 Score=67.92 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=49.8
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCc---------------HHHHHHHHHhhcCCCCCCCEE-Ee----CCCC---
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQ---------------SRFADALLRELAGVTIPPDRI-YG----LGTG--- 189 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~---------------~~~~~~~L~~~~gl~~~F~~i-v~----~d~~--- 189 (202)
....+|||+.++| +++|++++|+||++ ...+...|+.+ |+. |+.+ +| +++.
T Consensus 26 ~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gl~--fd~ii~~~~~~~~~~~~~ 102 (161)
T TIGR01261 26 EKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ-GII--FDDVLICPHFPDDNCDCR 102 (161)
T ss_pred HHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC-CCc--eeEEEECCCCCCCCCCCC
Confidence 3468999999999 68899999999973 55788899995 996 8755 45 3443
Q ss_pred -CChHHHHHHHhh
Q 028880 190 -LVLSMLLVQRWK 201 (202)
Q Consensus 190 -PkPe~l~~~~~~ 201 (202)
|+|+++..+..+
T Consensus 103 KP~~~~~~~~~~~ 115 (161)
T TIGR01261 103 KPKIKLLEPYLKK 115 (161)
T ss_pred CCCHHHHHHHHHH
Confidence 999999887654
No 80
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.31 E-value=4.5e-05 Score=63.64 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=61.9
Q ss_pred HHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHH
Q 028880 93 ILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADAL 169 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~ 169 (202)
+...|-.....++.+++++.+++.+.++ .....+.||+.+++ +++|+|++|+|++....++..
T Consensus 89 ~m~eWw~k~~~l~~~~~~~~e~i~~~v~--------------~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~v 154 (277)
T TIGR01544 89 YMVEWWTKSHGLLVQQAFPKAKIKEIVA--------------ESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEV 154 (277)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHh--------------hcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHH
Confidence 4566777778888888888776544332 24678999999999 689999999999999999999
Q ss_pred HHhhcCCCCCCCEE
Q 028880 170 LRELAGVTIPPDRI 183 (202)
Q Consensus 170 L~~~~gl~~~F~~i 183 (202)
|+.+ |+...+..|
T Consensus 155 L~~l-gl~~~~~~I 167 (277)
T TIGR01544 155 LRQA-GVYHPNVKV 167 (277)
T ss_pred HHHc-CCCCcCceE
Confidence 9995 998788777
No 81
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.23 E-value=1.6e-06 Score=68.50 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCC--CCChHHHHHH
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--GLVLSMLLVQ 198 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~--~PkPe~l~~~ 198 (202)
..+++||+.++| ++.|++++|+||.....+....+.+ |+ ++.++.++. .|.|.++..+
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-gi---~~~~v~a~~~~kP~~k~~~~~ 187 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-GI---FDSIVFARVIGKPEPKIFLRI 187 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-TS---CSEEEEESHETTTHHHHHHHH
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccccccccc-cc---ccccccccccccccchhHHHH
Confidence 347899999999 6899999999999999999999995 99 444444433 2666655544
No 82
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.15 E-value=2.8e-06 Score=64.42 Aligned_cols=57 Identities=16% Similarity=0.018 Sum_probs=48.9
Q ss_pred cCCCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC-CCCEEEeCCCC--CChH
Q 028880 136 GANRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGVTI-PPDRIYGLGTG--LVLS 193 (202)
Q Consensus 136 ~~~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~-~F~~iv~~d~~--PkPe 193 (202)
..+.++||+.++| -+++++++|+||+.+..++..++++ ++.. +|+.|++++++ .||.
T Consensus 42 ~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~l-~~~~~~f~~i~~~~d~~~~KP~ 103 (148)
T smart00577 42 VYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDLL-DPKKYFGYRRLFRDECVFVKGK 103 (148)
T ss_pred EEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHHh-CcCCCEeeeEEECccccccCCe
Confidence 3468899999999 2467999999999999999999996 9965 46999999887 7887
No 83
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.14 E-value=2.6e-05 Score=62.28 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=48.9
Q ss_pred cCCCCCCCHHHHH-HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC----------CChHHHHHHH
Q 028880 136 GANRFYPGIPDAL-KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG----------LVLSMLLVQR 199 (202)
Q Consensus 136 ~~~~~~pgv~e~L-~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~----------PkPe~l~~~~ 199 (202)
+..+|-|-.+++| .-...+..+-||+.+..+...|+++ |+.++|+.|++.+.. |.|+.+..+.
T Consensus 97 q~LkPD~~LRnlLL~l~~r~k~~FTNa~k~HA~r~Lk~L-GieDcFegii~~e~~np~~~~~vcKP~~~afE~a~ 170 (244)
T KOG3109|consen 97 QDLKPDPVLRNLLLSLKKRRKWIFTNAYKVHAIRILKKL-GIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAM 170 (244)
T ss_pred hhcCCCHHHHHHHHhCccccEEEecCCcHHHHHHHHHHh-ChHHhccceeEeeccCCCCCceeecCCHHHHHHHH
Confidence 3467777788888 3222238889999999999999996 999999999986532 8888877654
No 84
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.12 E-value=2.8e-06 Score=65.94 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=39.9
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcC-CcHHHHHHHHHhhcCCC----------CCCCEEEeCCCCCChHHHHHHHh
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTT-KQSRFADALLRELAGVT----------IPPDRIYGLGTGLVLSMLLVQRW 200 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn-~~~~~~~~~L~~~~gl~----------~~F~~iv~~d~~PkPe~l~~~~~ 200 (202)
..+.+||+|.++| +.+|++++++|- ...+.++..|+.+ ++. ++|+.+--... +|-.-+..++.
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l-~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~ 118 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL-EIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHR 118 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT-T-C----------CCECEEEESSS--HHHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc-CCCccccccccchhhcchhheecC-chHHHHHHHHH
Confidence 4568999999999 689999999994 5567899999996 999 88877433322 45555555554
No 85
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.04 E-value=8.2e-06 Score=65.22 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=44.3
Q ss_pred cCCCCCCCHHHHH---HcCC-CcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 136 GANRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g-~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
...+.-||+.+++ ++.| +.+.|+|.+..-+++..|+++ |+.+.|..|++..
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~-~~~d~F~~IfTNP 135 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA-GIHDLFSEIFTNP 135 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc-cHHHHHHHHhcCC
Confidence 3578999999999 4666 599999999999999999996 9999999988753
No 86
>PRK06769 hypothetical protein; Validated
Probab=98.02 E-value=8e-06 Score=63.52 Aligned_cols=63 Identities=17% Similarity=-0.007 Sum_probs=45.5
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHH--------HHHHHHHhhcCCCCCCCEEE-eCCCC----CChHHHHHHHhh
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSR--------FADALLRELAGVTIPPDRIY-GLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~--------~~~~~L~~~~gl~~~F~~iv-~~d~~----PkPe~l~~~~~~ 201 (202)
..+|||+.++| +++|++++|+||++.. .....++.+ |+..+|..+. +++.+ |+|++++.+..+
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGF-GFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhC-CcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 46899999999 6889999999998742 234457774 8766654433 34432 999999987653
No 87
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.00 E-value=6.4e-05 Score=59.10 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=50.7
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC--C------CC---EEEeCCC-------CCChH
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI--P------PD---RIYGLGT-------GLVLS 193 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~--~------F~---~iv~~d~-------~PkPe 193 (202)
.....+-||++++. +++|..++++|++.+..+..+-+.+ ||.. . |+ ...|.+. +-|++
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L-gi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~ 162 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL-GIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAE 162 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh-CCcHhhhhhheeeeccCCcccccccCCccccCCccHH
Confidence 35678999999998 7999999999999999999999996 9975 1 22 1222221 18999
Q ss_pred HHHHHHh
Q 028880 194 MLLVQRW 200 (202)
Q Consensus 194 ~l~~~~~ 200 (202)
.++.+|.
T Consensus 163 ~i~~lrk 169 (227)
T KOG1615|consen 163 VIALLRK 169 (227)
T ss_pred HHHHHHh
Confidence 9998885
No 88
>PLN02645 phosphoglycolate phosphatase
Probab=97.95 E-value=2.2e-05 Score=66.65 Aligned_cols=48 Identities=17% Similarity=0.430 Sum_probs=38.0
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCc---HHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQ---SRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~---~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
.++||+.++| +++|+++.++||++ .......|+.+ |+...++.|+++.
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~l-Gi~~~~~~I~ts~ 97 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESL-GLNVTEEEIFSSS 97 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHC-CCCCChhhEeehH
Confidence 5788888888 68899999999988 44445566885 9988888888775
No 89
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.93 E-value=2e-05 Score=65.43 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=27.5
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPD 181 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~ 181 (202)
+++|++++|+||++...+...++.+ |+..+|-
T Consensus 34 ~~~Gi~~~iaTgR~~~~~~~~~~~l-~l~~~~i 65 (273)
T PRK00192 34 KEKGIPVIPCTSKTAAEVEVLRKEL-GLEDPFI 65 (273)
T ss_pred HHCCCEEEEEcCCCHHHHHHHHHHc-CCCCCEE
Confidence 4688999999999999999999995 9876653
No 90
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.91 E-value=6.7e-05 Score=58.32 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 142 PGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 142 pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
|++.++| +++|+++.|+|++....++..++.+ |+..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~-~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL-GIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT-TSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCCc
Confidence 5555999 5889999999999999999999995 8875
No 91
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.89 E-value=1.8e-05 Score=66.41 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC-CCCEEEeCC----------CC-CChHHHHHHHh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI-PPDRIYGLG----------TG-LVLSMLLVQRW 200 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~-~F~~iv~~d----------~~-PkPe~l~~~~~ 200 (202)
...++||+.++| +++|++++|+||++....+..++.+ |+.. +|+.+++.+ .. |+|++++..-+
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l-~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~ 262 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL-RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFW 262 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH-HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHH
Confidence 357899999999 6889999999999999999999996 9997 999999987 22 88888887654
No 92
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.87 E-value=4.5e-05 Score=65.52 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=50.1
Q ss_pred hhhccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcC-------CCCCCCEEEeCCCCCChH
Q 028880 132 TTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAG-------VTIPPDRIYGLGTGLVLS 193 (202)
Q Consensus 132 ~~~~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~g-------l~~~F~~iv~~d~~PkPe 193 (202)
++....+.++||+.++| +++|++++|+||++...++..++.+.| +.++||.|+++.. ||.
T Consensus 177 ~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~--KP~ 246 (343)
T TIGR02244 177 ENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDAR--KPG 246 (343)
T ss_pred HCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCC--CCc
Confidence 34445567899999999 689999999999999999999999326 8999999999874 554
No 93
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.72 E-value=9.3e-05 Score=60.85 Aligned_cols=38 Identities=8% Similarity=0.178 Sum_probs=25.5
Q ss_pred HcCCCcEEEEcC---CcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 149 KFASSRIYIVTT---KQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 149 ~~~g~~~~IvTn---~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
+++|+++.++|| ++.......|+.+ |+....+.|+++.
T Consensus 30 ~~~g~~~~~~Tnn~~r~~~~~~~~l~~~-g~~~~~~~iit~~ 70 (249)
T TIGR01457 30 QKRDIPYLFVTNNSTRTPESVAEMLASF-DIPATLETVFTAS 70 (249)
T ss_pred HHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCCChhhEeeHH
Confidence 356778888887 4456667777774 7776666666653
No 94
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.67 E-value=5.9e-05 Score=61.63 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=45.7
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHH--HHHHhhcCCCC-CCCEEEeCCCC
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFAD--ALLRELAGVTI-PPDRIYGLGTG 189 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~--~~L~~~~gl~~-~F~~iv~~d~~ 189 (202)
....+|||+.++| +++|++++|+||+++.... ..|+++ |+.. +|+.|+++++.
T Consensus 21 ~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~-gl~~~~~~~Ii~s~~~ 79 (242)
T TIGR01459 21 DGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL-GINADLPEMIISSGEI 79 (242)
T ss_pred cCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC-CCCccccceEEccHHH
Confidence 3467899999999 6889999999999987765 789995 9998 99999998754
No 95
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.65 E-value=0.00012 Score=61.13 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=23.8
Q ss_pred HcCCCcEEEEcCCc---HHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 149 KFASSRIYIVTTKQ---SRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 149 ~~~g~~~~IvTn~~---~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
+++|++++++||++ +......|+.+ |+....+.|+++
T Consensus 31 ~~~g~~~~~~Tnns~~~~~~~~~~l~~~-G~~~~~~~i~ts 70 (279)
T TIGR01452 31 ARAGKAALFVTNNSTKSRAEYALKFARL-GFNGLAEQLFSS 70 (279)
T ss_pred HHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCCChhhEecH
Confidence 35778888888854 33444567774 876555666654
No 96
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.58 E-value=0.00014 Score=60.29 Aligned_cols=17 Identities=47% Similarity=0.528 Sum_probs=16.2
Q ss_pred CCceeEeecCccccCCc
Q 028880 1 MADLYALDFDGVLCDSC 17 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~ 17 (202)
|+++++||+||||+++.
T Consensus 1 m~kli~~DlDGTLl~~~ 17 (272)
T PRK15126 1 MARLAAFDMDGTLLMPD 17 (272)
T ss_pred CccEEEEeCCCcCcCCC
Confidence 88999999999999988
No 97
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.57 E-value=0.00026 Score=58.41 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.5
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEE
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY 184 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv 184 (202)
+++|++++|+|+++...+...++.+ ++....+.++
T Consensus 33 ~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~~~~~~I 67 (270)
T PRK10513 33 RAKGVNVVLTTGRPYAGVHRYLKEL-HMEQPGDYCI 67 (270)
T ss_pred HHCCCEEEEecCCChHHHHHHHHHh-CCCCCCCeEE
Confidence 4788999999999999999999995 8865333333
No 98
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.55 E-value=0.00017 Score=57.99 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=15.1
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
+++++||+||||+|+.
T Consensus 3 ~kli~~DlDGTLl~~~ 18 (230)
T PRK01158 3 IKAIAIDIDGTITDKD 18 (230)
T ss_pred eeEEEEecCCCcCCCC
Confidence 6999999999999988
No 99
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.53 E-value=0.00012 Score=60.61 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=28.5
Q ss_pred CCCHHHHH---HcCCCcEEEEcCCcHH---HHHHHHHhhcCCCCCCCEEEeC
Q 028880 141 YPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 141 ~pgv~e~L---~~~g~~~~IvTn~~~~---~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
+||+.++| +++|+++.++||++.. .....|+.+ |+.--.+.|+++
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~-g~~~~~~~i~ts 73 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL-GFDISEDEVFTP 73 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc-CCCCCHHHeEcH
Confidence 44444444 4678889999986555 366677774 876444555554
No 100
>PRK10444 UMP phosphatase; Provisional
Probab=97.53 E-value=0.0002 Score=59.02 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=13.9
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
+++++||+||||+++.
T Consensus 1 ~~~v~~DlDGtL~~~~ 16 (248)
T PRK10444 1 IKNVICDIDGVLMHDN 16 (248)
T ss_pred CcEEEEeCCCceEeCC
Confidence 4789999999999887
No 101
>PRK10976 putative hydrolase; Provisional
Probab=97.51 E-value=0.00018 Score=59.23 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=16.1
Q ss_pred CCceeEeecCccccCCc
Q 028880 1 MADLYALDFDGVLCDSC 17 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~ 17 (202)
|+|++++|+||||+|+.
T Consensus 1 mikli~~DlDGTLl~~~ 17 (266)
T PRK10976 1 MYQVVASDLDGTLLSPD 17 (266)
T ss_pred CceEEEEeCCCCCcCCC
Confidence 78999999999999998
No 102
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.44 E-value=0.00032 Score=57.75 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCceeEeecCccccCCc
Q 028880 1 MADLYALDFDGVLCDSC 17 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~ 17 (202)
|+++++||+||||+|+.
T Consensus 2 ~~kli~~DlDGTLl~~~ 18 (272)
T PRK10530 2 TYRVIALDLDGTLLTPK 18 (272)
T ss_pred CccEEEEeCCCceECCC
Confidence 27999999999999988
No 103
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00018 Score=59.79 Aligned_cols=49 Identities=35% Similarity=0.516 Sum_probs=33.5
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHH---HHHHHHhhcCCCCCCCEEEeCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~---~~~~L~~~~gl~~~F~~iv~~d 187 (202)
.++||+.++| +++|+++.++||+++.. ....|..+.+++...+.|++|.
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~ 78 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG 78 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH
Confidence 4567777776 58899999999987654 3455665225556677777764
No 104
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.27 E-value=0.00024 Score=52.54 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=44.3
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
..+.+||.++++| +..|+-++.+|=+....+-..|..+ ++.+||+.++.-
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral-~~~~yFhy~Vie 90 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRAL-DLLQYFHYIVIE 90 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHh-chhhhEEEEEec
Confidence 3468999999999 6899999999999999999999996 999999988654
No 105
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.27 E-value=0.00046 Score=53.63 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHHhh
Q 028880 147 ALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQRWK 201 (202)
Q Consensus 147 ~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~~~ 201 (202)
.|+++|++++|+||++...++..++.+ |+..+|+.+ .|||++++.+..+
T Consensus 45 ~L~~~Gi~laIiT~k~~~~~~~~l~~l-gi~~~f~~~-----kpkp~~~~~~~~~ 93 (169)
T TIGR02726 45 VLQLCGIDVAIITSKKSGAVRHRAEEL-KIKRFHEGI-----KKKTEPYAQMLEE 93 (169)
T ss_pred HHHHCCCEEEEEECCCcHHHHHHHHHC-CCcEEEecC-----CCCHHHHHHHHHH
Confidence 446889999999999999999999995 999888742 2999999988765
No 106
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.26 E-value=0.00076 Score=52.21 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCc-HHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHhh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQ-SRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRWK 201 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~-~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~~ 201 (202)
...+|||+.++| +++|++++|+||++ ...+...++.+ |+..++ ... |+|+++..+..+
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-gl~~~~------~~~KP~p~~~~~~l~~ 103 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-GIPVLP------HAVKPPGCAFRRAHPE 103 (170)
T ss_pred CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-CCEEEc------CCCCCChHHHHHHHHH
Confidence 347999999999 68899999999999 57777777884 875332 223 999999987654
No 107
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.007 Score=47.44 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=35.7
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcC
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAG 175 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~g 175 (202)
...+.+-||.+++. +.+++|+.|+|++....+.++++.. +
T Consensus 69 lk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~i-v 111 (220)
T COG4359 69 LKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI-V 111 (220)
T ss_pred HhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh-c
Confidence 35578999999999 6899999999999999999999986 5
No 108
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.22 E-value=0.00062 Score=56.05 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=22.8
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+++|++++|+|+++...+...++.+ ++..
T Consensus 33 ~~~g~~v~iaTGR~~~~~~~~~~~l-~~~~ 61 (264)
T COG0561 33 REKGVKVVLATGRPLPDVLSILEEL-GLDG 61 (264)
T ss_pred HHCCCEEEEECCCChHHHHHHHHHc-CCCc
Confidence 3677888888888888888888885 7765
No 109
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.21 E-value=0.00073 Score=53.94 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=19.2
Q ss_pred cCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 150 FASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 150 ~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
++|++++++|+++...+...++.+ ++..
T Consensus 32 ~~g~~~~~~TGR~~~~~~~~~~~l-~~~~ 59 (215)
T TIGR01487 32 KKGIPVSLVTGNTVPFARALAVLI-GTSG 59 (215)
T ss_pred HCCCEEEEEcCCcchhHHHHHHHh-CCCC
Confidence 566777777777777777777764 6543
No 110
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.21 E-value=0.00062 Score=53.59 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=30.5
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHH-------HHHHHHHhhcCCCCCCCEEEeCC
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSR-------FADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~-------~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
....+|+||+.++| .+.|..+.++|+++.. ....-|++++|-..+-+.+++.+
T Consensus 69 f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~ 131 (191)
T PF06941_consen 69 FSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD 131 (191)
T ss_dssp TTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS
T ss_pred hcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC
Confidence 35679999999999 5778677777776543 44556666434323334555544
No 111
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.20 E-value=0.00063 Score=52.13 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=44.9
Q ss_pred cCCCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCCC-CCC-CEEEeCCCC
Q 028880 136 GANRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGVT-IPP-DRIYGLGTG 189 (202)
Q Consensus 136 ~~~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl~-~~F-~~iv~~d~~ 189 (202)
..+.++||+.++| -.++++++|+||+.+..+..+++.+ +.. .+| +.+++.++.
T Consensus 55 ~~v~~rPgv~efL~~l~~~yel~I~T~~~~~yA~~vl~~l-dp~~~~F~~ri~~rd~~ 111 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLI-DPDGKYFGDRIISRDES 111 (156)
T ss_pred EEEEECCCHHHHHHHHHhhcEEEEEeCCcHHHHHHHHHHh-CcCCCeeccEEEEeccC
Confidence 4578999999999 2466999999999999999999996 988 489 678887653
No 112
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.17 E-value=0.00031 Score=59.93 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=13.3
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+++||+||||+++.
T Consensus 2 ~~ifD~DGvL~~g~ 15 (321)
T TIGR01456 2 GFAFDIDGVLFRGK 15 (321)
T ss_pred EEEEeCcCceECCc
Confidence 68999999999999
No 113
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.13 E-value=0.001 Score=55.96 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=26.0
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~ 179 (202)
+++|++++++|++....+....+.+ ++..+
T Consensus 31 k~~GI~vVlaTGRt~~ev~~l~~~L-gl~~p 60 (302)
T PRK12702 31 ERRSIPLVLYSLRTRAQLEHLCRQL-RLEHP 60 (302)
T ss_pred HHCCCEEEEEcCCCHHHHHHHHHHh-CCCCe
Confidence 4788999999999999999999996 98754
No 114
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.07 E-value=0.0017 Score=52.81 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=40.0
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHH---HHHHHHhhcCCCCCCCEEEeC
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~---~~~~L~~~~gl~~~F~~iv~~ 186 (202)
....++.||+.+++ +++|+++.++||++... +...|.+. |+..+ +.++-.
T Consensus 116 ~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~-G~~~~-~~LiLR 171 (229)
T TIGR01675 116 KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINA-GFTGW-KHLILR 171 (229)
T ss_pred cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHc-CCCCc-Ceeeec
Confidence 35679999999999 58999999999999766 77788884 98765 665544
No 115
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.06 E-value=0.0013 Score=53.20 Aligned_cols=30 Identities=30% Similarity=0.268 Sum_probs=25.1
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~ 179 (202)
+++|++++++|+++...+...++.+ |+..+
T Consensus 28 ~~~G~~~vi~TgR~~~~~~~~~~~l-g~~~~ 57 (225)
T TIGR02461 28 KDLGFPIVFVSSKTRAEQEYYREEL-GVEPP 57 (225)
T ss_pred HHCCCEEEEEeCCCHHHHHHHHHHc-CCCCc
Confidence 3678999999999999888899995 88653
No 116
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.96 E-value=0.0013 Score=50.46 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=35.1
Q ss_pred CCCHHHHH---HcCCCcEEEEcCC---cH-----------HHHHHHHHhhcCCCCCCCEEEeCCC-C---CChHHHHHHH
Q 028880 141 YPGIPDAL---KFASSRIYIVTTK---QS-----------RFADALLRELAGVTIPPDRIYGLGT-G---LVLSMLLVQR 199 (202)
Q Consensus 141 ~pgv~e~L---~~~g~~~~IvTn~---~~-----------~~~~~~L~~~~gl~~~F~~iv~~d~-~---PkPe~l~~~~ 199 (202)
.|+|.+.| ++.|+.++|+||- .+ ..+..+++.+ ++. +...++... . |.|-++..+-
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l-~ip--~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL-GIP--IQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC-TS---EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc-CCc--eEEEecCCCCCCCCCchhHHHHHH
Confidence 45677777 5889999999995 11 2345566663 554 333333332 2 8888888765
Q ss_pred hh
Q 028880 200 WK 201 (202)
Q Consensus 200 ~~ 201 (202)
.+
T Consensus 108 ~~ 109 (159)
T PF08645_consen 108 KD 109 (159)
T ss_dssp CC
T ss_pred Hh
Confidence 44
No 117
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.94 E-value=0.0037 Score=47.85 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCHHHHH---HcCCCcEEEEcCCcHHHHH---HHHHh
Q 028880 141 YPGIPDAL---KFASSRIYIVTTKQSRFAD---ALLRE 172 (202)
Q Consensus 141 ~pgv~e~L---~~~g~~~~IvTn~~~~~~~---~~L~~ 172 (202)
.||+.+++ +++|+++.++|+++..... ..|..
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 35555555 5789999999999987764 56655
No 118
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.91 E-value=0.0021 Score=51.45 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=25.0
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+++|++++++||++...+...++.+ |+.
T Consensus 29 ~~~gi~~~i~TgR~~~~~~~~~~~l-~~~ 56 (221)
T TIGR02463 29 QEAGIPVILCTSKTAAEVEYLQKAL-GLT 56 (221)
T ss_pred HHCCCeEEEEcCCCHHHHHHHHHHc-CCC
Confidence 4688999999999999999999995 886
No 119
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.89 E-value=0.0023 Score=52.19 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=10.7
Q ss_pred eEeecCccccCCc
Q 028880 5 YALDFDGVLCDSC 17 (202)
Q Consensus 5 viFD~DGTLvDs~ 17 (202)
++||+||||+|+.
T Consensus 1 ~lfD~DGvL~~~~ 13 (236)
T TIGR01460 1 FLFDIDGVLWLGH 13 (236)
T ss_pred CEEeCcCccCcCC
Confidence 5788888888887
No 120
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.83 E-value=0.0038 Score=51.75 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=24.8
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+++|++++++|+++...+...++.+ |+.
T Consensus 37 ~~~Gi~~viaTGR~~~~i~~~~~~l-~~~ 64 (271)
T PRK03669 37 REAQVPVILCSSKTAAEMLPLQQTL-GLQ 64 (271)
T ss_pred HHcCCeEEEEcCCCHHHHHHHHHHh-CCC
Confidence 4789999999999999999999996 885
No 121
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=96.82 E-value=0.017 Score=52.26 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 109 g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
|++.+++.+..+++..++.. . .+.|.+.+.+++.|. .+|+|.+++..++..++.+.|++
T Consensus 89 G~~~~el~~~~r~~l~~f~~-------~--~l~~~a~~~~~~~g~-~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 89 GLKIRDIELVSRSVLPKFYA-------E--DVHPETWRVFNSFGK-RYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CCCHHHHHHHHHHHHHHHHH-------H--hcCHHHHHHHHhCCC-EEEEECCcHHHHHHHHHHcCCCC
Confidence 55555554444444344331 1 256667777766664 49999999999999997622654
No 122
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.79 E-value=0.0024 Score=48.61 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=41.7
Q ss_pred HHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHHh
Q 028880 144 IPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQRW 200 (202)
Q Consensus 144 v~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~~ 200 (202)
+.+.|+++|++++|+||++...+...++.+ |+..+|+. . .|||+++..+..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-gi~~~~~~---~--~~k~~~~~~~~~ 86 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-GITHLYQG---Q--SNKLIAFSDILE 86 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-CCCEEEec---c--cchHHHHHHHHH
Confidence 344557899999999999999999999995 99887752 1 289999988764
No 123
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=96.77 E-value=0.0024 Score=53.06 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=36.7
Q ss_pred ccCCCCCCCHHHHH---HcCCCcEEEEcCCcHH---HHHHHHHhhcCCCCCCCEEEe
Q 028880 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIPPDRIYG 185 (202)
Q Consensus 135 ~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~---~~~~~L~~~~gl~~~F~~iv~ 185 (202)
....++.||+.++. ++.|+++.++||++.. .+...|.+ .|+..+ +.++-
T Consensus 141 ~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~k-aGy~~~-~~LiL 195 (275)
T TIGR01680 141 KGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKK-AGYHTW-EKLIL 195 (275)
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHH-cCCCCc-ceeee
Confidence 35678999999998 5899999999999864 35566777 488654 44443
No 124
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.66 E-value=0.0041 Score=50.92 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.7
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+++||+||||+|+.
T Consensus 1 li~~DlDGTLl~~~ 14 (256)
T TIGR00099 1 LIFIDLDGTLLNDD 14 (256)
T ss_pred CEEEeCCCCCCCCC
Confidence 47999999999987
No 125
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.66 E-value=0.0015 Score=49.75 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=23.9
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPP 180 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F 180 (202)
.+.|++++|+|+..+..++...+.+ |+...|
T Consensus 48 ~~~Gi~vAIITGr~s~ive~Ra~~L-GI~~~~ 78 (170)
T COG1778 48 LKSGIKVAIITGRDSPIVEKRAKDL-GIKHLY 78 (170)
T ss_pred HHcCCeEEEEeCCCCHHHHHHHHHc-CCceee
Confidence 4678888888888888888888885 876544
No 126
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=96.51 E-value=0.0064 Score=48.59 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.8
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+++|++++++|+++...+...+..+ ++.
T Consensus 28 ~~~g~~~~i~TGR~~~~~~~~~~~~-~~~ 55 (254)
T PF08282_consen 28 QEKGIKLVIATGRSYSSIKRLLKEL-GID 55 (254)
T ss_dssp HHTTCEEEEECSSTHHHHHHHHHHT-THC
T ss_pred cccceEEEEEccCcccccccccccc-cch
Confidence 3689999999999999999999985 876
No 127
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.49 E-value=0.0062 Score=49.97 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=23.8
Q ss_pred cCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 150 FASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 150 ~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
++|++++++|+++...+...++.+ |+..
T Consensus 30 ~~g~~~~~~TgR~~~~~~~~~~~~-~~~~ 57 (256)
T TIGR01486 30 ELGIPVIPCTSKTAAEVEYLRKEL-GLED 57 (256)
T ss_pred HCCCeEEEEcCCCHHHHHHHHHHc-CCCC
Confidence 568899999999999999999995 8753
No 128
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.18 E-value=0.024 Score=47.28 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=35.2
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT 188 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~ 188 (202)
++.|.-+.+=|.|.++.+...|+++ +|..+||.|++...
T Consensus 155 k~~g~vLvLWSyG~~eHV~~sl~~~-~L~~~Fd~ii~~G~ 193 (297)
T PF05152_consen 155 KEQGCVLVLWSYGNREHVRHSLKEL-KLEGYFDIIICGGN 193 (297)
T ss_pred HHcCCEEEEecCCCHHHHHHHHHHh-CCccccEEEEeCCc
Confidence 5788899999999999999999995 99999999998754
No 129
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.18 E-value=0.0075 Score=42.69 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHH---HHHHHHHhhcCCCCCCCEEEeCC
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~---~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
...++||+.++| +++|+++.++||++.. .....|+.+ |+.--.+.|+++.
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi~~~~~~i~ts~ 67 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GIPVDEDEIITSG 67 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TTT--GGGEEEHH
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-CcCCCcCEEEChH
Confidence 357899999999 6889999999998743 455667885 9886666777653
No 130
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=96.11 E-value=0.0017 Score=52.81 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHH---HHHHHHHhhcCCCCC
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIP 179 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~---~~~~~L~~~~gl~~~ 179 (202)
..++.||+.+++ +++|+++.++||++.. .+...|.+. |...+
T Consensus 113 ~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~-G~~~~ 160 (229)
T PF03767_consen 113 KAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKA-GFPGW 160 (229)
T ss_dssp GGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHH-TTSTB
T ss_pred cCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHc-CCCcc
Confidence 348999999999 6899999999997755 566778885 97543
No 131
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.06 E-value=0.0063 Score=55.72 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHH---HcCC-CcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHHh
Q 028880 137 ANRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQRW 200 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g-~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~~ 200 (202)
..+++||+.++| +++| ++++|+||+....++..++++ |+.++|..+.. + +|++.+..++.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l-gi~~~f~~~~p-~--~K~~~v~~l~~ 445 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL-GIDEVHAELLP-E--DKLAIVKELQE 445 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh-CCCeeeccCCH-H--HHHHHHHHHHH
Confidence 468999999999 6889 999999999999999999996 99888765411 1 68888877663
No 132
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.84 E-value=0.021 Score=43.89 Aligned_cols=52 Identities=17% Similarity=0.011 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC-CCCEEEeCCCC
Q 028880 137 ANRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGVTI-PPDRIYGLGTG 189 (202)
Q Consensus 137 ~~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~-~F~~iv~~d~~ 189 (202)
.+..-||+.++| -.+.+.++|.|++++.+++.+++.+ +... +|+.+++.++.
T Consensus 40 ~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~l-dp~~~~f~~~l~r~~~ 94 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDIL-DRGGKVISRRLYRESC 94 (162)
T ss_pred EEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHH-CcCCCEEeEEEEcccc
Confidence 357899999999 2344999999999999999999996 9876 89999988775
No 133
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=95.84 E-value=0.011 Score=53.99 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=49.8
Q ss_pred cCCCCCCCHHHHH---HcCCC-cEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHHh
Q 028880 136 GANRFYPGIPDAL---KFASS-RIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQRW 200 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~-~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~~ 200 (202)
-..+++||+.++| +++|+ +++|+||++...++..++++ |+.++|..+.. + +|++.+..++.
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l-gi~~~f~~~~p-~--~K~~~i~~l~~ 423 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL-GIDEVHAELLP-E--DKLEIVKELRE 423 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc-CChhhhhccCc-H--HHHHHHHHHHh
Confidence 3468999999999 68999 99999999999999999995 99888864421 1 67777777654
No 134
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.72 E-value=0.11 Score=46.68 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 144 IPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 144 v~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
+.+..++.| +.+|+|..++-.++..++.+.|. |.|+|.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~----D~VvGT 138 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRA----DEVIGS 138 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCC----ceEEee
Confidence 444445677 99999999999999999984254 445444
No 135
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=95.70 E-value=0.082 Score=41.53 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHH
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADA 168 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~ 168 (202)
..++||++.+.| ++.|.++.|-|+++-..+.-
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL 135 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKL 135 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHH
Confidence 468999999999 68999999999999775543
No 136
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.68 E-value=0.025 Score=44.25 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHHhh
Q 028880 148 LKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQRWK 201 (202)
Q Consensus 148 L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~~~ 201 (202)
|+++|++++|+||++...+...++.+ |+..+|+ +.+ +||+.++.+..+
T Consensus 60 L~~~Gi~v~I~T~~~~~~v~~~l~~l-gl~~~f~---g~~--~k~~~l~~~~~~ 107 (183)
T PRK09484 60 LLTSGIEVAIITGRKSKLVEDRMTTL-GITHLYQ---GQS--NKLIAFSDLLEK 107 (183)
T ss_pred HHHCCCEEEEEeCCCcHHHHHHHHHc-CCceeec---CCC--cHHHHHHHHHHH
Confidence 35789999999999999999999995 9988775 222 799998887654
No 137
>PTZ00174 phosphomannomutase; Provisional
Probab=95.58 E-value=0.011 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.6
Q ss_pred CceeEeecCccccCCcchhhHHH
Q 028880 2 ADLYALDFDGVLCDSCGESSLSA 24 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~~~~~ 24 (202)
.++|+|||||||+|+.+.....+
T Consensus 5 ~klia~DlDGTLL~~~~~is~~~ 27 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNPITQEM 27 (247)
T ss_pred CeEEEEECcCCCcCCCCCCCHHH
Confidence 47999999999999986555444
No 138
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.48 E-value=0.027 Score=52.47 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=23.5
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+++|++++++|+++...+...++.+ |+..
T Consensus 446 ~ekGI~~VIATGRs~~~i~~l~~~L-gl~~ 474 (694)
T PRK14502 446 KDKELPLVFCSAKTMGEQDLYRNEL-GIKD 474 (694)
T ss_pred HHcCCeEEEEeCCCHHHHHHHHHHc-CCCC
Confidence 4678899999999988888888885 7754
No 139
>PLN02423 phosphomannomutase
Probab=95.32 E-value=0.016 Score=47.57 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=17.5
Q ss_pred eeEeecCccccCCcchhhHHHHHH
Q 028880 4 LYALDFDGVLCDSCGESSLSAVKA 27 (202)
Q Consensus 4 ~viFD~DGTLvDs~~~~~~~~~~~ 27 (202)
+++|||||||+|+.+.+....+++
T Consensus 9 i~~~D~DGTLl~~~~~i~~~~~~a 32 (245)
T PLN02423 9 IALFDVDGTLTAPRKEATPEMLEF 32 (245)
T ss_pred EEEEeccCCCcCCCCcCCHHHHHH
Confidence 455999999999996665444433
No 140
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=95.07 E-value=0.0076 Score=48.08 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=13.8
Q ss_pred eEeecCccccCCcchhh
Q 028880 5 YALDFDGVLCDSCGESS 21 (202)
Q Consensus 5 viFD~DGTLvDs~~~~~ 21 (202)
|+|||||||+|+.+...
T Consensus 1 i~~DlDGTLl~~~~~i~ 17 (225)
T TIGR01482 1 IASDIDGTLTDPNRAIN 17 (225)
T ss_pred CeEeccCccCCCCcccC
Confidence 68999999999984433
No 141
>PLN02887 hydrolase family protein
Probab=94.91 E-value=0.024 Score=52.28 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCceeEeecCccccCCcchhhHHHHHH
Q 028880 1 MADLYALDFDGVLCDSCGESSLSAVKA 27 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~~~~~~~~~~~ 27 (202)
|+|+|+||+||||+|+.+.....+.++
T Consensus 307 ~iKLIa~DLDGTLLn~d~~Is~~t~eA 333 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKSQISETNAKA 333 (580)
T ss_pred CccEEEEeCCCCCCCCCCccCHHHHHH
Confidence 578999999999999986555554433
No 142
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=94.78 E-value=0.016 Score=42.75 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.5
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
|+|+||+||||.++.
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 799999999999865
No 143
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=94.70 E-value=0.11 Score=42.60 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=34.6
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHH----HHHHHHhhcCCCCCC
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRF----ADALLRELAGVTIPP 180 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~----~~~~L~~~~gl~~~F 180 (202)
....+.||+.++| -..|..+.-+||+..+. +...|.++ |+..--
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~-g~~~~~ 169 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSE-GLPQVL 169 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHc-Cccccc
Confidence 4568999999999 58899999999999886 45556663 776543
No 144
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.52 E-value=0.0039 Score=50.82 Aligned_cols=59 Identities=7% Similarity=-0.059 Sum_probs=45.9
Q ss_pred CCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEE--EeCCCC----CChHHHHHHHhh
Q 028880 141 YPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRI--YGLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 141 ~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~i--v~~d~~----PkPe~l~~~~~~ 201 (202)
||++.++| .++|+++ |+||++.......+..+ |...+|..+ +|.+.. |+|+++..+..+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~-~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~ 207 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY-GAGYYAELIKQLGGKVIYSGKPYPAIFHKALKE 207 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe-cccHHHHHHHHhCCcEecCCCCCHHHHHHHHHH
Confidence 78888888 4679997 89999998887777774 887777765 566543 999999887654
No 145
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=94.42 E-value=0.077 Score=48.79 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHh
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
..+++||+.++| +++|++++|+||+....++..++.+ |+. +++.-.. +|++.+..++.
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-gi~-----~~~~~~p~~K~~~v~~l~~ 464 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-GIN-----VRAEVLPDDKAALIKELQE 464 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-CCc-----EEccCChHHHHHHHHHHHH
Confidence 357899999999 6889999999999999999999995 995 3332222 77887777654
No 146
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=94.26 E-value=0.02 Score=43.53 Aligned_cols=16 Identities=50% Similarity=0.655 Sum_probs=13.9
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
+++|+||+||||+|..
T Consensus 1 ~~~~~~D~Dgtl~~~~ 16 (154)
T TIGR01670 1 IRLLILDVDGVLTDGK 16 (154)
T ss_pred CeEEEEeCceeEEcCe
Confidence 4789999999999954
No 147
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=94.11 E-value=0.024 Score=44.38 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=14.0
Q ss_pred CceeEeecCccccCC
Q 028880 2 ADLYALDFDGVLCDS 16 (202)
Q Consensus 2 ~~~viFD~DGTLvDs 16 (202)
+++|+||+||||+|+
T Consensus 21 ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 21 IRLLICDVDGVFSDG 35 (183)
T ss_pred ceEEEEcCCeeeecC
Confidence 589999999999997
No 148
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=92.56 E-value=0.11 Score=40.75 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.4
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+++||+||||+++.
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 48999999999876
No 149
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=92.45 E-value=0.049 Score=41.22 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=37.7
Q ss_pred CCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCC-CCCCCEEEeCCC
Q 028880 138 NRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGV-TIPPDRIYGLGT 188 (202)
Q Consensus 138 ~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl-~~~F~~iv~~d~ 188 (202)
+.+.||+.++| -...+.++|.|++++..++.+++.+ .- ..+|+.++..++
T Consensus 35 v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~l-dp~~~~~~~~~~r~~ 87 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDAL-DPNGKLFSRRLYRDD 87 (159)
T ss_dssp EEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHH-TTTTSSEEEEEEGGG
T ss_pred EeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhh-hhhcccccccccccc
Confidence 45689999988 2455999999999999999999996 65 467888887654
No 150
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=92.07 E-value=0.013 Score=48.30 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=45.7
Q ss_pred CCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCC------C-CChHHHHHHHhh
Q 028880 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT------G-LVLSMLLVQRWK 201 (202)
Q Consensus 140 ~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~------~-PkPe~l~~~~~~ 201 (202)
.|+++.+++ +..+++++|+||++.......+..+ |+..+|+.+.++.. + |+|+++..+..+
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~-g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~ 191 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLAL-DVGPFVTALEYATDTKATVVGKPSKTFFLEALRA 191 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCC-CchHHHHHHHHHhCCCceeecCCCHHHHHHHHHH
Confidence 366777766 5678999999999988777777774 88888987765432 2 888888877653
No 151
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.72 E-value=0.082 Score=37.30 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=12.1
Q ss_pred eEeecCccccCCc
Q 028880 5 YALDFDGVLCDSC 17 (202)
Q Consensus 5 viFD~DGTLvDs~ 17 (202)
++||+||||++..
T Consensus 1 ~l~D~dGvl~~g~ 13 (101)
T PF13344_consen 1 FLFDLDGVLYNGN 13 (101)
T ss_dssp EEEESTTTSEETT
T ss_pred CEEeCccEeEeCC
Confidence 6899999999988
No 152
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=91.64 E-value=0.47 Score=42.46 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhc--------CCCCCCCEEEeCCCCCChHHH
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELA--------GVTIPPDRIYGLGTGLVLSML 195 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~--------gl~~~F~~iv~~d~~PkPe~l 195 (202)
.+..-|.+..+| ++.|.++.++||+.-.++...++.+. .+.++||.||+... ||.=+
T Consensus 181 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~--KP~FF 248 (448)
T PF05761_consen 181 YIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDAR--KPGFF 248 (448)
T ss_dssp CEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES----CCHHH
T ss_pred HccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCC--CCccc
Confidence 345567777777 78999999999999999999998874 35679999988653 55544
No 153
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=91.52 E-value=0.092 Score=40.70 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=14.5
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
+++++||+||||.|..
T Consensus 7 i~~~v~d~dGv~tdg~ 22 (169)
T TIGR02726 7 IKLVILDVDGVMTDGR 22 (169)
T ss_pred CeEEEEeCceeeECCe
Confidence 4799999999999985
No 154
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=91.40 E-value=0.98 Score=35.47 Aligned_cols=59 Identities=27% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCC---------------cHHHHHHHHHhhcCCCCCCCEEEeCCCC---------CC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTK---------------QSRFADALLRELAGVTIPPDRIYGLGTG---------LV 191 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~---------------~~~~~~~~L~~~~gl~~~F~~iv~~d~~---------Pk 191 (202)
.+.||+.+.| .+.|++++|+||. .+......|+. .|. -|+.|+-.-+. |+
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~-~gv--~id~i~~Cph~p~~~c~cRKP~ 107 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILAS-QGV--KIDGILYCPHHPEDNCDCRKPK 107 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHH-cCC--ccceEEECCCCCCCCCcccCCC
Confidence 5789999988 6899999999992 23345566666 365 57776544221 88
Q ss_pred hHHHHHHHh
Q 028880 192 LSMLLVQRW 200 (202)
Q Consensus 192 Pe~l~~~~~ 200 (202)
|-+++.+..
T Consensus 108 ~gm~~~~~~ 116 (181)
T COG0241 108 PGMLLSALK 116 (181)
T ss_pred hHHHHHHHH
Confidence 888887654
No 155
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=90.18 E-value=0.59 Score=45.40 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=42.3
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
+|.||+.+++ +++|+++.++|+.....+....+.+ |+...++.+++++
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-Gi~~~~~~~v~g~ 578 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-GMPSKTSQSVSGE 578 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCCceeEhH
Confidence 7899999999 7899999999999999999999995 9988877665543
No 156
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=89.42 E-value=0.18 Score=41.77 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.3
Q ss_pred ceeEeecCccccCC
Q 028880 3 DLYALDFDGVLCDS 16 (202)
Q Consensus 3 ~~viFD~DGTLvDs 16 (202)
.+++||+||||++.
T Consensus 15 ~li~~D~DGTLl~~ 28 (266)
T PRK10187 15 YAWFFDLDGTLAEI 28 (266)
T ss_pred EEEEEecCCCCCCC
Confidence 37999999999984
No 157
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=89.31 E-value=0.061 Score=41.30 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=14.1
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
.++++||.||||+++.
T Consensus 1 ~~~~~~d~dg~l~~~~ 16 (161)
T TIGR01261 1 QKILFIDRDGTLIEEP 16 (161)
T ss_pred CCEEEEeCCCCccccC
Confidence 3689999999999976
No 158
>PRK10671 copA copper exporting ATPase; Provisional
Probab=88.77 E-value=0.35 Score=46.58 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHH
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQR 199 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~ 199 (202)
.+++||+.++| ++.|++++++|+.....++..++.+ |+.++|..+ .. +|++.+..++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-gi~~~~~~~----~p~~K~~~i~~l~ 709 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-GIDEVIAGV----LPDGKAEAIKRLQ 709 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCCEEEeCC----CHHHHHHHHHHHh
Confidence 47899999998 6889999999999999999999995 997644322 12 5777666654
No 159
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=88.50 E-value=0.22 Score=40.63 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.7
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
.+++||+||||+...
T Consensus 4 ~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 4 RAFFFDYDGTLSEIV 18 (244)
T ss_pred EEEEEecCccccCCc
Confidence 478999999999853
No 160
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.18 E-value=0.04 Score=45.94 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=39.9
Q ss_pred CCCCHHHHH---HcCCCcEEEEcCCcHHHH-HHHHHhhcCCCCCCCEEE---eCCCC----CChHHHHHHHhh
Q 028880 140 FYPGIPDAL---KFASSRIYIVTTKQSRFA-DALLRELAGVTIPPDRIY---GLGTG----LVLSMLLVQRWK 201 (202)
Q Consensus 140 ~~pgv~e~L---~~~g~~~~IvTn~~~~~~-~~~L~~~~gl~~~F~~iv---~~d~~----PkPe~l~~~~~~ 201 (202)
.|+|+.++| +++|+ ++|+||++.... ...+.. .|+..+|+.+. +.+.. |+|+++..+..+
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~-~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~ 214 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRT-PGTGSLVAAIETASGRQPLVVGKPSPYMFECITEN 214 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcc-cChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHH
Confidence 488888888 45676 899999987543 222344 36666776654 33332 889998887764
No 161
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=88.10 E-value=0.24 Score=39.99 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=12.8
Q ss_pred eeEeecCccccCCcc
Q 028880 4 LYALDFDGVLCDSCG 18 (202)
Q Consensus 4 ~viFD~DGTLvDs~~ 18 (202)
+|++||||||+|+..
T Consensus 1 li~~DlDgTLl~~~~ 15 (236)
T TIGR02471 1 LIITDLDNTLLGDDE 15 (236)
T ss_pred CeEEeccccccCCHH
Confidence 478999999999763
No 162
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=87.97 E-value=3.1 Score=34.28 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=49.5
Q ss_pred HHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHH
Q 028880 93 ILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADAL 169 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~ 169 (202)
....|-.....++.+.+++.+++.+... .....+.+|+.+++ ++.++|+.|.|.+-...++..
T Consensus 58 ~M~EWw~kah~llv~~~l~k~~i~~~V~--------------~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~v 123 (246)
T PF05822_consen 58 HMEEWWTKAHELLVEQGLTKSEIEEAVK--------------ESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEV 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHT-BGGGHHHHHH--------------CS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHH--------------hcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHH
Confidence 3456777788888899998877655543 24578899999998 689999999999999999999
Q ss_pred HHhhcCCC
Q 028880 170 LRELAGVT 177 (202)
Q Consensus 170 L~~~~gl~ 177 (202)
|++. |..
T Consensus 124 L~q~-~~~ 130 (246)
T PF05822_consen 124 LRQA-GVF 130 (246)
T ss_dssp HHHT-T--
T ss_pred HHHc-CCC
Confidence 9994 653
No 163
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=85.74 E-value=1 Score=33.95 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.1
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
++++||+||||+++.
T Consensus 1 k~LVlDLD~TLv~~~ 15 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSS 15 (159)
T ss_dssp EEEEEE-CTTTEEEE
T ss_pred CEEEEeCCCcEEEEe
Confidence 579999999999999
No 164
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=85.66 E-value=0.83 Score=37.18 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=10.7
Q ss_pred eeEeecCccccC
Q 028880 4 LYALDFDGVLCD 15 (202)
Q Consensus 4 ~viFD~DGTLvD 15 (202)
+|+.||||||+|
T Consensus 3 li~tDlDGTLl~ 14 (249)
T TIGR01485 3 LLVSDLDNTLVD 14 (249)
T ss_pred EEEEcCCCcCcC
Confidence 577899999997
No 165
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=84.57 E-value=1.8 Score=41.20 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=45.0
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
+++||+.+++ ++.|++++++|+.....++.+.+.+ |+..++. ... .|++.+..++.
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l-gi~~~~~-----~~p~~K~~~v~~l~~ 627 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL-GIDFRAG-----LLPEDKVKAVTELNQ 627 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCeecC-----CCHHHHHHHHHHHhc
Confidence 8899999999 6899999999999999999999995 9963322 111 48888877664
No 166
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=84.24 E-value=1.6 Score=34.38 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=36.3
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHH----HHHHhhcCCCCCCCEEEeCCCCCChHHH
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFAD----ALLRELAGVTIPPDRIYGLGTGLVLSML 195 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~----~~L~~~~gl~~~F~~iv~~d~~PkPe~l 195 (202)
...-|-+=+++++ .++|-.+..+|++++..++ .+-+. +.+......++.+|. |||.-+
T Consensus 111 ~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~-F~i~~m~pv~f~Gdk-~k~~qy 175 (237)
T COG3700 111 EFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKN-FHITNMNPVIFAGDK-PKPGQY 175 (237)
T ss_pred cccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhh-cccCCCcceeeccCC-CCcccc
Confidence 3334444456666 4788999999998765432 33344 477776677777764 455443
No 167
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=83.65 E-value=0.65 Score=34.82 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.7
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
..+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999996
No 168
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=83.60 E-value=0.61 Score=37.07 Aligned_cols=15 Identities=40% Similarity=0.456 Sum_probs=13.8
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
++++.|+||||+|+.
T Consensus 22 klLVLDLDeTLvh~~ 36 (195)
T TIGR02245 22 KLLVLDIDYTLFDHR 36 (195)
T ss_pred cEEEEeCCCceEccc
Confidence 689999999999985
No 169
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=82.38 E-value=0.69 Score=38.54 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=13.8
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
++++||+||||++-.
T Consensus 19 ~~~~lDyDGTl~~i~ 33 (266)
T COG1877 19 RLLFLDYDGTLTEIV 33 (266)
T ss_pred eEEEEeccccccccc
Confidence 689999999999887
No 170
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=82.15 E-value=4.3 Score=33.67 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=12.5
Q ss_pred eEeecCccccCCc
Q 028880 5 YALDFDGVLCDSC 17 (202)
Q Consensus 5 viFD~DGTLvDs~ 17 (202)
|+||.||||.+.+
T Consensus 124 IAFDgDaVLfsDe 136 (264)
T PF06189_consen 124 IAFDGDAVLFSDE 136 (264)
T ss_pred EEEcCCeEeecCc
Confidence 7999999999999
No 171
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=80.23 E-value=0.97 Score=43.75 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCceeEeecCccccCCc
Q 028880 1 MADLYALDFDGVLCDSC 17 (202)
Q Consensus 1 m~~~viFD~DGTLvDs~ 17 (202)
|.+++++|+||||++..
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 45799999999999765
No 172
>PLN02580 trehalose-phosphatase
Probab=79.46 E-value=0.97 Score=39.66 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=11.2
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+++||+||||+.=.
T Consensus 121 ~LfLDyDGTLaPIv 134 (384)
T PLN02580 121 ALFLDYDGTLSPIV 134 (384)
T ss_pred EEEEecCCccCCCC
Confidence 68889999997433
No 173
>PLN03017 trehalose-phosphatase
Probab=78.69 E-value=1 Score=39.19 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=10.2
Q ss_pred eeEeecCcccc
Q 028880 4 LYALDFDGVLC 14 (202)
Q Consensus 4 ~viFD~DGTLv 14 (202)
++++|+||||+
T Consensus 113 llflD~DGTL~ 123 (366)
T PLN03017 113 VMFLDYDGTLS 123 (366)
T ss_pred EEEEecCCcCc
Confidence 68889999999
No 174
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=78.56 E-value=1 Score=42.69 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=12.7
Q ss_pred ceeEeecCccccCC
Q 028880 3 DLYALDFDGVLCDS 16 (202)
Q Consensus 3 ~~viFD~DGTLvDs 16 (202)
++++||+||||++.
T Consensus 493 rLi~~D~DGTL~~~ 506 (726)
T PRK14501 493 RLLLLDYDGTLVPF 506 (726)
T ss_pred eEEEEecCccccCC
Confidence 68999999999984
No 175
>PLN02151 trehalose-phosphatase
Probab=78.21 E-value=1.7 Score=37.69 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=10.3
Q ss_pred eeEeecCcccc
Q 028880 4 LYALDFDGVLC 14 (202)
Q Consensus 4 ~viFD~DGTLv 14 (202)
++++|+||||+
T Consensus 100 ll~lDyDGTL~ 110 (354)
T PLN02151 100 VMFLDYDGTLS 110 (354)
T ss_pred EEEEecCccCC
Confidence 68899999999
No 176
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=77.90 E-value=1.1 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=14.0
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
+.+.||+||||||+.
T Consensus 76 K~i~FD~dgtlI~t~ 90 (422)
T KOG2134|consen 76 KIIMFDYDGTLIDTK 90 (422)
T ss_pred ceEEEecCCceeecC
Confidence 678999999999998
No 177
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=77.90 E-value=1.3 Score=33.81 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.9
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
+.+++|+|+|||-|.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999998
No 178
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=77.25 E-value=17 Score=31.11 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=35.1
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHH
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQR 199 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~ 199 (202)
.-++|.+.+++ ++.|+.+.|.||+.... .++.+ ....+.+.-+=+.++|+.+..++
T Consensus 141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e---~l~~L---~~~~d~i~VSLda~~~e~~~~i~ 199 (322)
T PRK13762 141 PTLYPYLPELIEEFHKRGFTTFLVTNGTRPD---VLEKL---EEEPTQLYVSLDAPDEETYKKIN 199 (322)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEECCCCCHH---HHHHH---HhcCCEEEEEccCCCHHHHHHHh
Confidence 34678888888 67899999999997643 34442 22235443322236777766654
No 179
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=77.17 E-value=9.1 Score=32.43 Aligned_cols=44 Identities=27% Similarity=0.512 Sum_probs=32.8
Q ss_pred cCCCCCCCHHHHH---HcCC-CcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 136 GANRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g-~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
....+||...+++ ++.| ++.+|+||++. ..+++.+ . .+|.++-+
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L-~---~~dql~~s 136 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL-K---LPDQLYVS 136 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh-c---cCCEEEEE
Confidence 4457899999998 7888 79999999997 4556664 3 56665543
No 180
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=75.00 E-value=1.6 Score=33.86 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.2
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
+++++||+|.||+--.
T Consensus 41 ik~li~DkDNTL~~~~ 56 (168)
T PF09419_consen 41 IKALIFDKDNTLTPPY 56 (168)
T ss_pred ceEEEEcCCCCCCCCC
Confidence 5799999999997443
No 181
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.95 E-value=4.3 Score=36.73 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=33.1
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC--------CChHHHHHHHhh
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG--------LVLSMLLVQRWK 201 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~--------PkPe~l~~~~~~ 201 (202)
+++|+-++|+|-.....++....++ -+.|+--++- ||.+.++.+..|
T Consensus 268 ~kqGVlLav~SKN~~~da~evF~kh------p~MiLkeedfa~~~iNW~~K~eNirkIAkk 322 (574)
T COG3882 268 KKQGVLLAVCSKNTEKDAKEVFRKH------PDMILKEEDFAVFQINWDPKAENIRKIAKK 322 (574)
T ss_pred HhccEEEEEecCCchhhHHHHHhhC------CCeEeeHhhhhhheecCCcchhhHHHHHHH
Confidence 6889999999988888888877764 2333333321 888888877654
No 182
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=74.47 E-value=4.2 Score=38.64 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=47.0
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCCCChHHHHHHHh
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGLVLSMLLVQRW 200 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~PkPe~l~~~~~ 200 (202)
-++-|++.+.+ +++|+++.++|+-.+..++.+-+.+ |+++++..+.-. .|-+.+..+|.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-GId~v~AellPe---dK~~~V~~l~~ 597 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL-GIDEVRAELLPE---DKAEIVRELQA 597 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-ChHhheccCCcH---HHHHHHHHHHh
Confidence 37889999998 7999999999999999999999996 997665544222 36677766664
No 183
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=73.48 E-value=1.6 Score=35.22 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=7.8
Q ss_pred EeecCccccCCcc
Q 028880 6 ALDFDGVLCDSCG 18 (202)
Q Consensus 6 iFD~DGTLvDs~~ 18 (202)
+||+||||++-..
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 6999999998774
No 184
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=72.89 E-value=1.9 Score=33.02 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=12.5
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.|++|+||||.-|.
T Consensus 1 VVvsDIDGTiT~SD 14 (157)
T PF08235_consen 1 VVVSDIDGTITKSD 14 (157)
T ss_pred CEEEeccCCcCccc
Confidence 48999999999996
No 185
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=72.47 E-value=5.8 Score=30.77 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
...-|.+.+.+ +..|+++.|+||+.+.-+.....++ |+.
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-~v~ 86 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-GVP 86 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-CCc
Confidence 34556666666 7899999999999999998888885 763
No 186
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=71.66 E-value=4.4 Score=31.55 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.7
Q ss_pred eEeecCccccCCc
Q 028880 5 YALDFDGVLCDSC 17 (202)
Q Consensus 5 viFD~DGTLvDs~ 17 (202)
.+.|+||||.|..
T Consensus 9 ~ciDIDGtit~~~ 21 (194)
T COG5663 9 CCIDIDGTITDDP 21 (194)
T ss_pred eeeccCCceecCc
Confidence 6789999999987
No 187
>PLN02382 probable sucrose-phosphatase
Probab=70.90 E-value=2.2 Score=37.76 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.7
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+|+-||||||+|+.
T Consensus 11 lI~sDLDGTLL~~~ 24 (413)
T PLN02382 11 MIVSDLDHTMVDHH 24 (413)
T ss_pred EEEEcCCCcCcCCC
Confidence 56669999999974
No 188
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=70.79 E-value=7.2 Score=30.72 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 140 ~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+-|...+.| +++|++++++|+++...+...++.+ |+..
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l-~~~~ 56 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI-GTPD 56 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CCCC
Confidence 445566666 5799999999999999999999885 8543
No 189
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=70.39 E-value=2.5 Score=34.43 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=13.4
Q ss_pred CCceeEeecCccccC
Q 028880 1 MADLYALDFDGVLCD 15 (202)
Q Consensus 1 m~~~viFD~DGTLvD 15 (202)
|..+|+-|+||||++
T Consensus 6 ~~~lIFtDlD~TLl~ 20 (274)
T COG3769 6 MPLLIFTDLDGTLLP 20 (274)
T ss_pred cceEEEEcccCcccC
Confidence 567888999999999
No 190
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=69.74 E-value=2.3 Score=35.91 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.5
Q ss_pred CceeEeecCccccCCcc
Q 028880 2 ADLYALDFDGVLCDSCG 18 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~ 18 (202)
.+.++||.|||||-..+
T Consensus 22 ~DtfifDcDGVlW~g~~ 38 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEK 38 (306)
T ss_pred cCEEEEcCCcceeecCC
Confidence 37899999999999663
No 191
>PRK06769 hypothetical protein; Validated
Probab=69.32 E-value=2.7 Score=32.33 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.7
Q ss_pred CceeEeecCcccc
Q 028880 2 ADLYALDFDGVLC 14 (202)
Q Consensus 2 ~~~viFD~DGTLv 14 (202)
+++++||.||||.
T Consensus 4 ~~~~~~d~d~~~~ 16 (173)
T PRK06769 4 IQAIFIDRDGTIG 16 (173)
T ss_pred CcEEEEeCCCccc
Confidence 4899999999995
No 192
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=69.17 E-value=2.8 Score=31.88 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=14.2
Q ss_pred ceeEeecCccccCCcc
Q 028880 3 DLYALDFDGVLCDSCG 18 (202)
Q Consensus 3 ~~viFD~DGTLvDs~~ 18 (202)
..+++|+|.||+.|..
T Consensus 7 l~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 7 LHLVLDLDQTLIHTTK 22 (156)
T ss_pred eEEEEeCCCCcccccc
Confidence 4689999999999993
No 193
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=68.32 E-value=5.3 Score=37.73 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=43.4
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHH
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQR 199 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~ 199 (202)
++-||+++.+ ++.|+++.++|+-....+..+-+.+ |+.++|..+ .. .|-+.+..+|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI~~v~A~~----~PedK~~iV~~lQ 500 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA-GVDRFVAEC----KPEDKINVIREEQ 500 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCceEEcCC----CHHHHHHHHHHHH
Confidence 7899999999 7899999999999999999999995 997644322 11 4555555554
No 194
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=67.46 E-value=11 Score=30.24 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
+++|++++++|+++...+...+..+ ++. ..+.+++.
T Consensus 27 ~~~gi~~viaTGR~~~~v~~~~~~l-~l~-~~~~~I~~ 62 (236)
T TIGR02471 27 SGDAVGFGIATGRSVESAKSRYAKL-NLP-SPDVLIAR 62 (236)
T ss_pred cCCCceEEEEeCCCHHHHHHHHHhC-CCC-CCCEEEEC
Confidence 5789999999999999999999995 886 35566654
No 195
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=67.17 E-value=13 Score=35.30 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
++.||+++.+ ++.|+++.++|+-....+..+-+.+ |++++ ++.-.. .|-+.+..+|.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GId~v----~A~~~PedK~~iV~~lQ~ 505 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GVDDF----LAEATPEDKLALIRQEQA 505 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCcEE----EccCCHHHHHHHHHHHHH
Confidence 6789999998 7899999999999999999999995 99653 332222 46666666554
No 196
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=66.90 E-value=12 Score=35.45 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=43.4
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
++-||+.+.+ ++.|+++.++|+.....+...-+.+ |++++| +.-.. .|-+.+..++.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l-GI~~v~----a~~~PedK~~~v~~lq~ 506 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA-GVDDFI----AEATPEDKIALIRQEQA 506 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCEEE----cCCCHHHHHHHHHHHHH
Confidence 7889999998 6899999999999999999999995 986543 22221 45555555543
No 197
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=66.71 E-value=9.5 Score=32.35 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhh--cCCC
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLREL--AGVT 177 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~--~gl~ 177 (202)
.-.+.||+.++| ++.|..+.++||++...-+..++++ .|+.
T Consensus 36 g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 458999999998 7899999999998877665555432 2655
No 198
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=66.40 E-value=3.4 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=12.9
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.++++-|||.||++
T Consensus 42 ~lvL~eDGTeVddE 55 (78)
T cd01615 42 TLVLEEDGTEVDDE 55 (78)
T ss_pred EEEEeCCCcEEccH
Confidence 48899999999999
No 199
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=65.67 E-value=3.7 Score=31.50 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=13.8
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
.++|++|+||||.+..
T Consensus 25 v~~vv~D~Dgtl~~~~ 40 (170)
T TIGR01668 25 IKGVVLDKDNTLVYPD 40 (170)
T ss_pred CCEEEEecCCccccCC
Confidence 3789999999999765
No 200
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=65.55 E-value=3.7 Score=27.78 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=12.7
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.|+++=|||.||++
T Consensus 44 ~lvL~eDGT~VddE 57 (80)
T cd06536 44 TLVLAEDGTIVEDE 57 (80)
T ss_pred EEEEecCCcEEccH
Confidence 47799999999999
No 201
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=64.42 E-value=12 Score=30.20 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=31.9
Q ss_pred CCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEe
Q 028880 142 PGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYG 185 (202)
Q Consensus 142 pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~ 185 (202)
|.+.+++ +++|++++++|+++...++..++.+ ++.. .+.+++
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~-~~~~-p~~~I~ 68 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK-PLLT-PDIWVT 68 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC-CCCC-CCEEEE
Confidence 4445555 5788999999999999999999885 8754 555555
No 202
>PTZ00445 p36-lilke protein; Provisional
Probab=63.91 E-value=19 Score=29.11 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=41.3
Q ss_pred CCCCHHHHH---HcCCCcEEEEcCCcHH---------------HHHHHHHhhcCCCCCCCEEEeCCC------------C
Q 028880 140 FYPGIPDAL---KFASSRIYIVTTKQSR---------------FADALLRELAGVTIPPDRIYGLGT------------G 189 (202)
Q Consensus 140 ~~pgv~e~L---~~~g~~~~IvTn~~~~---------------~~~~~L~~~~gl~~~F~~iv~~d~------------~ 189 (202)
+-|....++ ++.|++++|||=++.. .+...|++ .+-..-+..+++.-. +
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~-s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK-SKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh-cCccceeeeeeeeCCcccCChhhhhhhc
Confidence 455566665 5889999999988874 47788887 466655666665321 1
Q ss_pred ---CChHH--H--HHHHhh
Q 028880 190 ---LVLSM--L--LVQRWK 201 (202)
Q Consensus 190 ---PkPe~--l--~~~~~~ 201 (202)
|.|++ + ..+.++
T Consensus 155 l~KPdp~iK~yHle~ll~~ 173 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSD 173 (219)
T ss_pred ccCCCccchHHHHHHHHHH
Confidence 78888 6 665554
No 203
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=63.33 E-value=4.1 Score=31.62 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.3
Q ss_pred CceeEeecCccccC
Q 028880 2 ADLYALDFDGVLCD 15 (202)
Q Consensus 2 ~~~viFD~DGTLvD 15 (202)
.++|++|+|.|||-
T Consensus 28 ikgvi~DlDNTLv~ 41 (175)
T COG2179 28 IKGVILDLDNTLVP 41 (175)
T ss_pred CcEEEEeccCceec
Confidence 47899999999983
No 204
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=62.88 E-value=7.1 Score=33.99 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.8
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhh--cCCCCCCCEEEeCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLREL--AGVTIPPDRIYGLG 187 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~--~gl~~~F~~iv~~d 187 (202)
++.|.++.++||++..++..-+.-+ ..+.+.||.|+.-.
T Consensus 253 ~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA 293 (510)
T KOG2470|consen 253 KDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQA 293 (510)
T ss_pred HHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEec
Confidence 5899999999999999887655543 24567899877643
No 205
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=62.76 E-value=4 Score=36.42 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=14.4
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
.+.|++|+||||.-|-
T Consensus 375 ~kiVVsDiDGTITkSD 390 (580)
T COG5083 375 KKIVVSDIDGTITKSD 390 (580)
T ss_pred CcEEEEecCCcEEehh
Confidence 3789999999999887
No 206
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=62.76 E-value=8.7 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.094 Sum_probs=14.4
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
...++||-|+.-+||+
T Consensus 24 es~iiFDNded~tdSa 39 (65)
T PF06117_consen 24 ESDIIFDNDEDKTDSA 39 (65)
T ss_pred CCCeeecCCCcccchH
Confidence 4579999999999999
No 207
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=62.00 E-value=4.2 Score=27.53 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=12.9
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.++++-|||.|||+
T Consensus 41 ~lvLeeDGT~Vd~E 54 (81)
T cd06537 41 TLVLEEDGTAVDSE 54 (81)
T ss_pred EEEEecCCCEEccH
Confidence 58899999999999
No 208
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=61.84 E-value=4.8 Score=27.17 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.8
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.|+.+-|||.||++
T Consensus 41 ~lvL~eDGT~Vd~E 54 (79)
T cd06538 41 SLVLDEDGTGVDTE 54 (79)
T ss_pred EEEEecCCcEEccH
Confidence 47899999999999
No 209
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=61.47 E-value=4.4 Score=27.02 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.8
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.|+++=|||.||++
T Consensus 40 ~l~L~eDGT~VddE 53 (74)
T smart00266 40 TLVLEEDGTIVDDE 53 (74)
T ss_pred EEEEecCCcEEccH
Confidence 57899999999999
No 210
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=61.25 E-value=4.5 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.8
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.++.+-|||.|||+
T Consensus 42 ~lvL~eDGT~Vd~E 55 (78)
T cd06539 42 TLVLEEDGTVVDTE 55 (78)
T ss_pred EEEEeCCCCEEccH
Confidence 57889999999999
No 211
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=61.13 E-value=13 Score=36.45 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=35.5
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+|.||+.+++ +++|+++.++|+.....+....+.+ |+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-GIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-CCCC
Confidence 6899999999 7999999999999999999999995 9964
No 212
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=61.11 E-value=33 Score=25.18 Aligned_cols=46 Identities=24% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHH---------------HHHHHHHhhcCCCCCCCEEEeC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSR---------------FADALLRELAGVTIPPDRIYGL 186 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~---------------~~~~~L~~~~gl~~~F~~iv~~ 186 (202)
..+.+++.+.| +++|+.+.++|+++.. .+...|+++ ++ .+|.++-+
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~-~i--pYd~l~~~ 86 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH-NV--PYDEIYVG 86 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc-CC--CCceEEeC
Confidence 35778888888 4889999999999765 345677775 76 35665443
No 213
>PTZ00445 p36-lilke protein; Provisional
Probab=60.12 E-value=3.6 Score=33.22 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=13.1
Q ss_pred CceeEeecCccccC
Q 028880 2 ADLYALDFDGVLCD 15 (202)
Q Consensus 2 ~~~viFD~DGTLvD 15 (202)
+++|++|||-||++
T Consensus 43 Ik~Va~D~DnTlI~ 56 (219)
T PTZ00445 43 IKVIASDFDLTMIT 56 (219)
T ss_pred CeEEEecchhhhhh
Confidence 58999999999999
No 214
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=59.00 E-value=4.8 Score=39.42 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.6
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
.+++||+||||+.-.
T Consensus 592 RLlfLDyDGTLap~~ 606 (934)
T PLN03064 592 RLLILGFNATLTEPV 606 (934)
T ss_pred eEEEEecCceeccCC
Confidence 478999999999743
No 215
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=58.86 E-value=5.5 Score=32.58 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=12.7
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
.+++.||||||++..
T Consensus 3 ~ll~sDlD~Tl~~~~ 17 (247)
T PF05116_consen 3 RLLASDLDGTLIDGD 17 (247)
T ss_dssp EEEEEETBTTTBHCH
T ss_pred EEEEEECCCCCcCCC
Confidence 579999999999555
No 216
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=58.15 E-value=5 Score=38.68 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.6
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
.+++||+||||+.-.
T Consensus 508 rll~LDyDGTL~~~~ 522 (797)
T PLN03063 508 RLLILGFYGTLTEPR 522 (797)
T ss_pred eEEEEecCccccCCC
Confidence 478999999999654
No 217
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=57.38 E-value=32 Score=28.33 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhh--cCCC
Q 028880 142 PGIPDAL---KFASSRIYIVTTKQSRFADALLREL--AGVT 177 (202)
Q Consensus 142 pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~--~gl~ 177 (202)
+.+.+++ ..+|+++..+|..+.......++.+ .|++
T Consensus 84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 3455555 6899999999999877665544443 2553
No 218
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=56.62 E-value=14 Score=27.63 Aligned_cols=60 Identities=10% Similarity=0.243 Sum_probs=43.9
Q ss_pred cCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHH
Q 028880 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQR 199 (202)
Q Consensus 136 ~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~ 199 (202)
..-.+|+.+.+.+ ++. +.+.|+|+-...++...++- .|+. .+.++...+. -|.+++..++
T Consensus 27 tgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~-~gi~--~~rv~a~a~~e~K~~ii~eLk 90 (152)
T COG4087 27 TGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEF-VGIP--VERVFAGADPEMKAKIIRELK 90 (152)
T ss_pred cCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHH-cCCc--eeeeecccCHHHHHHHHHHhc
Confidence 3457899999998 566 99999999998999888888 4853 4455544443 6666666665
No 219
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=55.36 E-value=9.3 Score=32.49 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCCCCCHHHHH---HcC----CCcEEEEcCCc---HHH-HHHHHHhhcCCCCCCCEE
Q 028880 138 NRFYPGIPDAL---KFA----SSRIYIVTTKQ---SRF-ADALLRELAGVTIPPDRI 183 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~----g~~~~IvTn~~---~~~-~~~~L~~~~gl~~~F~~i 183 (202)
..++||+.++| +.+ |+++.++||.. ... ++.+.+.+ |+.--.+.|
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l-G~~~~~~~i 70 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL-GVDVSPLQV 70 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc-CCCCCHHHH
Confidence 46699999888 456 99999999987 444 34444775 875333333
No 220
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=51.69 E-value=20 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRE 172 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~ 172 (202)
++-|.+.+.| +++|++++|+|+++...+...++.
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 3556677777 578899999999999999888876
No 221
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=51.00 E-value=7.8 Score=33.55 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.6
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
+++|-||||.||+-=.
T Consensus 12 i~~~GFDmDyTLa~Y~ 27 (343)
T TIGR02244 12 IQVFGFDMDYTLAQYK 27 (343)
T ss_pred CCEEEECccccccccC
Confidence 4789999999998655
No 222
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=50.63 E-value=24 Score=33.82 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+|.|++.+++ ++.|+++.++|+-....+..+-+.+ |+.+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL-GLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCC
Confidence 7889999998 7899999999999999999999995 9964
No 223
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=49.90 E-value=33 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=33.8
Q ss_pred CCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 138 NRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 138 ~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
...-|++.++| -.+.+.++|=|+++...+..+++.+ |+.
T Consensus 44 ~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l-~~~ 84 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL-GVL 84 (195)
T ss_pred EEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh-ccc
Confidence 35689999999 3668999999999999999999995 764
No 224
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=49.43 E-value=10 Score=25.57 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=12.3
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
.++++=|||+||++
T Consensus 42 ~lvL~eDGT~VddE 55 (78)
T PF02017_consen 42 RLVLEEDGTEVDDE 55 (78)
T ss_dssp EEEETTTTCBESSC
T ss_pred EEEEeCCCcEEccH
Confidence 36788999999999
No 225
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=49.31 E-value=54 Score=32.11 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=44.8
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCCCC-CChHHHHHHHh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-LVLSMLLVQRW 200 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d~~-PkPe~l~~~~~ 200 (202)
++.|++..++ ++.|+++.++|+-....++..-+.+ | ++.|++.-.. .|-+.+..++.
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-G----i~~V~aev~P~~K~~~Ik~lq~ 783 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-G----IDNVYAEVLPEQKAEKIKEIQK 783 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-C----cceEEeccCchhhHHHHHHHHh
Confidence 6778887777 8999999999999999999999995 8 6666664433 57777776654
No 226
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=48.51 E-value=6.6 Score=26.08 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=8.8
Q ss_pred eEeecCcccc
Q 028880 5 YALDFDGVLC 14 (202)
Q Consensus 5 viFD~DGTLv 14 (202)
+=|||+|.|+
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 3499999999
No 227
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=48.04 E-value=8.6 Score=33.03 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.9
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+++||+||||+-.-
T Consensus 37 gfafDIDGVL~RG~ 50 (389)
T KOG1618|consen 37 GFAFDIDGVLFRGH 50 (389)
T ss_pred eEEEecccEEEecC
Confidence 68999999999988
No 228
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=47.32 E-value=54 Score=31.95 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=37.3
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD 181 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~ 181 (202)
+|.|++.+.+ ++.|+++.++|+-..+.+.++-++. |+-..=+
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~i-Gi~~~~e 628 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREI-GIFSEDE 628 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHh-CCCcCCc
Confidence 7899999988 7999999999999999999999995 9865554
No 229
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=47.13 E-value=8.5 Score=30.90 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=12.7
Q ss_pred eeEeecCccccCCc
Q 028880 4 LYALDFDGVLCDSC 17 (202)
Q Consensus 4 ~viFD~DGTLvDs~ 17 (202)
+++||.||||.-..
T Consensus 13 l~lfdvdgtLt~~r 26 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPR 26 (252)
T ss_pred EEEEecCCcccccc
Confidence 78999999998877
No 230
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=46.91 E-value=10 Score=29.76 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=14.3
Q ss_pred ceeEeecCccccCCcc
Q 028880 3 DLYALDFDGVLCDSCG 18 (202)
Q Consensus 3 ~~viFD~DGTLvDs~~ 18 (202)
++|++|-||||...-+
T Consensus 6 k~lflDRDGtin~d~~ 21 (181)
T COG0241 6 KALFLDRDGTINIDKG 21 (181)
T ss_pred cEEEEcCCCceecCCC
Confidence 6999999999998883
No 231
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=45.59 E-value=43 Score=32.87 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+|.|++.+++ +++|+++.++|+-....+..+-+.+ |+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-GI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-GLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC
Confidence 7889999998 7899999999999999999999995 995
No 232
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=45.40 E-value=13 Score=30.92 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.6
Q ss_pred ceeEeecCccccCCc
Q 028880 3 DLYALDFDGVLCDSC 17 (202)
Q Consensus 3 ~~viFD~DGTLvDs~ 17 (202)
++++||+||||.+..
T Consensus 159 ~~~~~D~dgtl~~~~ 173 (300)
T PHA02530 159 KAVIFDIDGTLAKMG 173 (300)
T ss_pred CEEEEECCCcCcCCC
Confidence 579999999999987
No 233
>PTZ00174 phosphomannomutase; Provisional
Probab=45.02 E-value=49 Score=26.75 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=25.8
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHh
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRE 172 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~ 172 (202)
.+-|...++| +++|++++|+|+++...+...++.
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 3445566676 689999999999998877666654
No 234
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=44.83 E-value=42 Score=32.96 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=34.6
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+|-|++.+++ ++.|+++.++|+-....+..+-+.+ |+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~ 590 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-GLD 590 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCC
Confidence 6788999998 6899999999999999999999995 995
No 235
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=44.23 E-value=42 Score=33.04 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.3
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+|.|++.+++ +++|+++.++|+-....+..+-+.+ |+..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-GI~~ 620 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-GILT 620 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCC
Confidence 7889999999 6899999999999999999999995 9964
No 236
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=43.91 E-value=51 Score=24.51 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHH-HHHHHHHhhcCCCC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSR-FADALLRELAGVTI 178 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~-~~~~~L~~~~gl~~ 178 (202)
...|+.+...| +.+|+.++++|++... .+...|+.+ ....
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~f-kvk~ 86 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETF-KVKQ 86 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh-ccCc
Confidence 45677777777 8999999999998765 567778875 6543
No 237
>PLN02645 phosphoglycolate phosphatase
Probab=43.16 E-value=3.2 Score=35.13 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=32.9
Q ss_pred CCcEEEEcCCcHHH-HHHHHHhhcCCCCCCCEEEeCCCC-------CChHHHHHHHhh
Q 028880 152 SSRIYIVTTKQSRF-ADALLRELAGVTIPPDRIYGLGTG-------LVLSMLLVQRWK 201 (202)
Q Consensus 152 g~~~~IvTn~~~~~-~~~~L~~~~gl~~~F~~iv~~d~~-------PkPe~l~~~~~~ 201 (202)
+-.++|+||++... ....+.. .|...+|+.+.++... |+|+++..+..+
T Consensus 186 ~g~~~i~tn~d~~~~~~~~~~~-~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~ 242 (311)
T PLN02645 186 PGCLFIATNRDAVTHLTDAQEW-AGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANK 242 (311)
T ss_pred CCCEEEEeCCCCCCCCCCCCCc-cchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHH
Confidence 34789999999754 2344455 3777888887765432 777888776543
No 238
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=43.00 E-value=60 Score=31.96 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=41.2
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCC--EEEeCCC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD--RIYGLGT 188 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~--~iv~~d~ 188 (202)
-+|-|++++++ +++|+++.++|+-....+..+-+.+ |+..--+ .++.++.
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~-Gi~~~~~~~~vi~G~e 600 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKEC-GIEAEAESALVIDGAE 600 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHc-CCCCCCCceeEeehHH
Confidence 38899999999 7999999999999999999999995 9876553 3555543
No 239
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=41.91 E-value=34 Score=33.97 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=34.7
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+|-|++.+++ +++|+++.++|+.....+....+.+ |+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~-gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV-GII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC
Confidence 7789999999 6899999999999999999999995 995
No 240
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=40.07 E-value=41 Score=33.66 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=35.5
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
+|.|++.+++ +++|+++.++|+-....+..+-+.+ |+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~-Gi~~ 687 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV-GIIP 687 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCC
Confidence 7889999999 7999999999999999999999995 9953
No 241
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=39.76 E-value=18 Score=30.17 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.5
Q ss_pred CceeEeecCccccCCc
Q 028880 2 ADLYALDFDGVLCDSC 17 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~ 17 (202)
.+.++.|+|+||+-|.
T Consensus 89 kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 89 RKTLVLDLDETLVHSS 104 (262)
T ss_pred CceEEEeCCCcccccc
Confidence 4789999999999888
No 242
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=39.48 E-value=42 Score=32.74 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+|.|++.+++ ++.|+++.++|+-....+..+-+.+ |+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-GI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-GID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCC
Confidence 7789999999 7899999999999999999999995 996
No 243
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.82 E-value=1.2e+02 Score=25.18 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCCC---HHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 139 RFYPG---IPDALKFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 139 ~~~pg---v~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
...|| ++++|+..|+|..|+|..+..-....|+. .|+.
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~-~g~G 111 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEE-QGLG 111 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHh-cCCc
Confidence 44455 88889999999999999998888888998 5873
No 244
>PLN02887 hydrolase family protein
Probab=34.84 E-value=74 Score=29.67 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=30.5
Q ss_pred CCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 140 ~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+-+...+.| +++|++++|+|+++...+...++.+ ++.
T Consensus 326 Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L-~l~ 365 (580)
T PLN02887 326 ISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV-DLA 365 (580)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-Ccc
Confidence 445556666 5899999999999999999999995 875
No 245
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=34.04 E-value=19 Score=31.78 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=31.2
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhc--CCCCCCCEEEeCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELA--GVTIPPDRIYGLG 187 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~--gl~~~F~~iv~~d 187 (202)
+..|.+..++||+.-.++...+..++ ++..||+.++...
T Consensus 211 r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a 251 (424)
T KOG2469|consen 211 RDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRA 251 (424)
T ss_pred HhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEec
Confidence 78999999999999888877776653 4678999876653
No 246
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=33.13 E-value=49 Score=27.29 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=27.7
Q ss_pred CCCCCCHHHHH---Hc-CCCcEEEEcCCcHHHHHHHHHh
Q 028880 138 NRFYPGIPDAL---KF-ASSRIYIVTTKQSRFADALLRE 172 (202)
Q Consensus 138 ~~~~pgv~e~L---~~-~g~~~~IvTn~~~~~~~~~L~~ 172 (202)
..+-|.+.+.| .+ .|+.++|+|+++...+...++.
T Consensus 35 ~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~ 73 (266)
T PRK10187 35 VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKP 73 (266)
T ss_pred ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCc
Confidence 35567777777 34 7899999999999988887766
No 247
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=31.48 E-value=78 Score=25.78 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHH---HHHHHHhhcCCCCCCCEEEe
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYG 185 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~---~~~~L~~~~gl~~~F~~iv~ 185 (202)
.+.||+.+.| +.++.++-.+||...++ +...|.++ |+.---+.|++
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rl-gf~v~eeei~t 74 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRL-GFDVSEEEIFT 74 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHh-CCCccHHHhcC
Confidence 4789999998 57889999999977664 45566664 76533333443
No 248
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=30.73 E-value=25 Score=28.04 Aligned_cols=21 Identities=14% Similarity=-0.017 Sum_probs=15.3
Q ss_pred ceeEeecCccccCCcchhhHH
Q 028880 3 DLYALDFDGVLCDSCGESSLS 23 (202)
Q Consensus 3 ~~viFD~DGTLvDs~~~~~~~ 23 (202)
..|-||||||+.---..|+..
T Consensus 59 ~~v~~D~~GT~m~iPYGYLA~ 79 (271)
T PF06901_consen 59 HTVTFDFQGTKMVIPYGYLAR 79 (271)
T ss_pred eeEEEeccceEEEeechhhhc
Confidence 578999999998655445443
No 249
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=30.24 E-value=1.6e+02 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=25.8
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~ 178 (202)
++.|++++.+||+++..+...-+.+ |+..
T Consensus 36 ~d~G~~Vi~~SSKT~aE~~~l~~~l-~v~~ 64 (274)
T COG3769 36 KDAGVPVILCSSKTRAEMLYLQKSL-GVQG 64 (274)
T ss_pred HHcCCeEEEeccchHHHHHHHHHhc-CCCC
Confidence 7999999999999999998888885 8873
No 250
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=30.04 E-value=99 Score=29.18 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=40.9
Q ss_pred cCCCCCCCHHHHH--HcCCCcEEEEcCCcHHHHHHHHHhhcCCC-CCC-CEEEeCCCC
Q 028880 136 GANRFYPGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGVT-IPP-DRIYGLGTG 189 (202)
Q Consensus 136 ~~~~~~pgv~e~L--~~~g~~~~IvTn~~~~~~~~~L~~~~gl~-~~F-~~iv~~d~~ 189 (202)
..+++-|++.++| ...=+.|.|.|-+.+.++..+++-+ .=. .|| +.|++.+..
T Consensus 198 ~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~li-DP~~~lF~dRIisrde~ 254 (635)
T KOG0323|consen 198 YLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLI-DPEGKYFGDRIISRDES 254 (635)
T ss_pred EEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHh-CCCCccccceEEEecCC
Confidence 3468999999999 2445899999999999998887764 332 477 578887753
No 251
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=29.25 E-value=71 Score=31.95 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=35.4
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~ 179 (202)
+|-||+.+++ +++|+++.++|+-..+.+..+-.. +|+-..
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~-~~ii~~ 673 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYS-CRLLSR 673 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHH-hCCCCC
Confidence 7899999999 799999999999999999999888 488643
No 252
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=29.09 E-value=1.3e+02 Score=30.05 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=35.9
Q ss_pred CCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCC
Q 028880 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~ 179 (202)
++-|++.+++ +++|+++.++|+-....+..+-+.. |+...
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~-gii~~ 698 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVAREC-GIVNP 698 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCC
Confidence 7899999999 7899999999999999999999994 99643
No 253
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=28.80 E-value=2.1e+02 Score=25.39 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.9
Q ss_pred CCCCCHHHHH---HcCCCcEEEE-cCCc
Q 028880 139 RFYPGIPDAL---KFASSRIYIV-TTKQ 162 (202)
Q Consensus 139 ~~~pgv~e~L---~~~g~~~~Iv-Tn~~ 162 (202)
-.+|.+.++| ++.|++++|. ||+.
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 4577788888 6779999996 9964
No 254
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=27.88 E-value=31 Score=31.05 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=11.3
Q ss_pred CceeEeecCccccCCcc
Q 028880 2 ADLYALDFDGVLCDSCG 18 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~ 18 (202)
+++|-||||-||+-=..
T Consensus 12 i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 12 IDVIGFDMDYTLARYKS 28 (448)
T ss_dssp --EEEE-TBTTTBEE-C
T ss_pred CCEEEECcccchhhcCH
Confidence 47899999999986553
No 255
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=89 Score=26.15 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=48.0
Q ss_pred HHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCHHH---HHHcCCCcEEEEcCCcHHHHHHH
Q 028880 93 ILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPD---ALKFASSRIYIVTTKQSRFADAL 169 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~y~~~~~~~~~~~pgv~e---~L~~~g~~~~IvTn~~~~~~~~~ 169 (202)
+.+.|-..+..++-..|.+..++.+...+.... +..|..+ +|.+.++|+.|.|.+-...++..
T Consensus 106 ~MeeWW~kSH~Lliq~~f~k~~I~~~Va~s~i~--------------lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev 171 (298)
T KOG3128|consen 106 HMEEWWTKSHELLIQGGFSKNAIDDIVAESNIA--------------LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEV 171 (298)
T ss_pred HHHHHHhcccceeecCCcCHHHHHHHHHHhhHH--------------HHHHHHHHHHHHHhCCCceEEEecchHHHHHHH
Confidence 345555556666666677666654444433333 3344444 44788999999999999988888
Q ss_pred HHhhcCCCCCCCEEEe
Q 028880 170 LRELAGVTIPPDRIYG 185 (202)
Q Consensus 170 L~~~~gl~~~F~~iv~ 185 (202)
+..- .-...+..+++
T Consensus 172 ~~q~-~~~~pn~k~vS 186 (298)
T KOG3128|consen 172 TRQK-LVLHPNVKFVS 186 (298)
T ss_pred HHHH-hccCccHHhhh
Confidence 7773 44444444433
No 256
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=25.80 E-value=1.2e+02 Score=23.42 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=23.8
Q ss_pred CCCCCCHHHHH---HcCCC--cEEEEcCCc-------HHHHHHHHHhhcCC
Q 028880 138 NRFYPGIPDAL---KFASS--RIYIVTTKQ-------SRFADALLRELAGV 176 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~--~~~IvTn~~-------~~~~~~~L~~~~gl 176 (202)
..+.|.+.+.+ ++.+. ++.|+||+. ...++..-+.+ |+
T Consensus 58 ~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-gI 107 (168)
T PF09419_consen 58 DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-GI 107 (168)
T ss_pred CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-CC
Confidence 35556666666 34443 599999983 55566666664 64
No 257
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=24.71 E-value=1.2e+02 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=33.4
Q ss_pred CCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcCC
Q 028880 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGV 176 (202)
Q Consensus 138 ~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~gl 176 (202)
-++.|++.+++ +..|+++.++|+.....+...-+.+ |+
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l-gi 386 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL-GI 386 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-Cc
Confidence 37899999998 6799999999999999999888884 86
No 258
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=23.19 E-value=3e+02 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=14.3
Q ss_pred CceeEeecCccccCCcchh
Q 028880 2 ADLYALDFDGVLCDSCGES 20 (202)
Q Consensus 2 ~~~viFD~DGTLvDs~~~~ 20 (202)
+.+|-||||+||.--.-+.
T Consensus 27 i~~~GfdmDyTL~~Y~~~~ 45 (424)
T KOG2469|consen 27 IGIVGFDMDYTLARYNLPE 45 (424)
T ss_pred CcEEeeccccchhhhcccc
Confidence 3689999999998655333
No 259
>PHA03321 tegument protein VP11/12; Provisional
Probab=23.18 E-value=6.5e+02 Score=23.87 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=59.3
Q ss_pred cCccccCCcchhhHHHHHHHHHhCCCCcCCCccchhHHHHHHhchhccceechhhHHHHHHHHHhhhCcccccccCCCCC
Q 028880 9 FDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGL 88 (202)
Q Consensus 9 ~DGTLvDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 88 (202)
++|.|+=|..+.+.++..+-.+....+.- ..| ++.+....+...-.....+.+++..+. |.
T Consensus 36 ~~GCLLPtP~~~l~aAV~AL~~~~e~l~p---~~L--~~~~R~~~L~~~~~N~VPESlIv~~~~--------------gD 96 (694)
T PHA03321 36 FGGCLLPTPEGLLGAAVGALRQRSDDLQP---AFL--TGADRAAQLAARRHNSVPESLVVDGIT--------------GD 96 (694)
T ss_pred hcccccCChHHHHHHHHHHHHHHHhhcCc---cch--hhHHHHHHHHhcccCCCCchhhhhhhc--------------cC
Confidence 57888888888887777665544222111 011 121111122222222333333334443 44
Q ss_pred CHHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 028880 89 TVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDK 129 (202)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~~~~el~~~~~~~~~~~~~~ 129 (202)
+.+++...|.......+++.+++.+.+.+.+...|-.|.+.
T Consensus 97 ~~~EY~r~Y~~aakr~L~~~~LS~~~v~R~ila~YWkYLq~ 137 (694)
T PHA03321 97 PHCEYIKHYAAAALESLAEAGASSGQLSRAILAQYWKYLQA 137 (694)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677788888888999999999999888777666555544
No 260
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=22.95 E-value=2.7e+02 Score=22.67 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.0
Q ss_pred cCCCCCCC---HHHHHHcCCCcEEEEcCCcHHHHHHHHHhhcCCC
Q 028880 136 GANRFYPG---IPDALKFASSRIYIVTTKQSRFADALLRELAGVT 177 (202)
Q Consensus 136 ~~~~~~pg---v~e~L~~~g~~~~IvTn~~~~~~~~~L~~~~gl~ 177 (202)
+..+.-|| ++++|++.++|..|++..+...++..|+. .|+.
T Consensus 68 sPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdelee-qGlG 111 (277)
T COG1927 68 SPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEE-QGLG 111 (277)
T ss_pred CCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHh-cCCe
Confidence 33445555 66777889999999999999899999999 5884
No 261
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.14 E-value=4.4e+02 Score=21.87 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHH--cCCCcEEEEcCCcHHHHHHHHHhhcCC
Q 028880 138 NRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGV 176 (202)
Q Consensus 138 ~~~~pgv~e~L~--~~g~~~~IvTn~~~~~~~~~L~~~~gl 176 (202)
.++.||+.++++ +.-++=.|+|.+.+++++.+.... |+
T Consensus 82 a~lvPgA~etm~~l~~~~tp~v~STSY~qy~~r~a~~i-g~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQERWTPVVISTSYTQYLRRTASMI-GV 121 (315)
T ss_pred cccCCChHHHHHHHhccCCceEEeccHHHHHHHHHHhc-CC
Confidence 689999999994 444677888888889998888774 76
No 262
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=21.07 E-value=3.8e+02 Score=22.15 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHhhhhhhccCCCCCCCHHHHH---HcCCCcEEEEcCCcHHHHHHHHHhhcC-------CCCCCCEEEeC
Q 028880 127 MDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAG-------VTIPPDRIYGL 186 (202)
Q Consensus 127 ~~~y~~~~~~~~~~~pgv~e~L---~~~g~~~~IvTn~~~~~~~~~L~~~~g-------l~~~F~~iv~~ 186 (202)
.+.|...-+. .+.|+++...+ +..|+++.|-|+++...+.-+... .+ +..|||.-+|.
T Consensus 112 ~~gy~sg~lk-~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~-s~~gdl~~y~~gyfDt~iG~ 179 (254)
T KOG2630|consen 112 AAGYESGELK-AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGY-SDAGDLRKYISGYFDTTIGL 179 (254)
T ss_pred Hhhccccccc-ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcc-cCcchHHHHhhhhhhccccc
Confidence 3444433333 38899999999 588999999999997755443322 11 24577765554
No 263
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=20.93 E-value=21 Score=27.09 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHH--cCCCcEEEEcCC--cHHH----HHHHHHhhcCCCCCCCEEEeCCCC
Q 028880 137 ANRFYPGIPDALK--FASSRIYIVTTK--QSRF----ADALLRELAGVTIPPDRIYGLGTG 189 (202)
Q Consensus 137 ~~~~~pgv~e~L~--~~g~~~~IvTn~--~~~~----~~~~L~~~~gl~~~F~~iv~~d~~ 189 (202)
.....|++..+++ -..+.+.|||.. -..+ .+-+++. +.+..+=..|+|+...
T Consensus 66 nL~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~-FPFi~~qn~vfCgnKn 125 (180)
T COG4502 66 NLGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEK-FPFISYQNIVFCGNKN 125 (180)
T ss_pred hcCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHH-CCCCChhhEEEecCCC
Confidence 3567888888883 455889999887 2223 3444555 3666666678887643
No 264
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=20.38 E-value=1e+02 Score=25.10 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=27.3
Q ss_pred HcCCCcEEEEcCCcHHHHHHHHHhhcCCCCCCCEEEeCC
Q 028880 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (202)
Q Consensus 149 ~~~g~~~~IvTn~~~~~~~~~L~~~~gl~~~F~~iv~~d 187 (202)
.+.++.++++|+++.+.+..++... ++. .+|.++|+-
T Consensus 32 ~~~~~~~v~~TGRs~~~~~~~~~~~-~l~-~Pd~~I~sv 68 (247)
T PF05116_consen 32 ARPEILFVYVTGRSLESVLRLLREY-NLP-QPDYIITSV 68 (247)
T ss_dssp HCCGEEEEEE-SS-HHHHHHHHHHC-T-E-E-SEEEETT
T ss_pred hCCCceEEEECCCCHHHHHHHHHhC-CCC-CCCEEEecC
Confidence 3677899999999999999999994 874 468888864
No 265
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.37 E-value=2.4e+02 Score=24.00 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=20.5
Q ss_pred CCCCCCCHHHHH---HcCCCcEEEEcCCc
Q 028880 137 ANRFYPGIPDAL---KFASSRIYIVTTKQ 162 (202)
Q Consensus 137 ~~~~~pgv~e~L---~~~g~~~~IvTn~~ 162 (202)
..-+.|++.+++ ++.|+.+.|.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 344578888888 57789999999986
Done!