BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028881
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 24 SGNGSQQATPSAKDDRTAEFSTH----------RMDKSIGSSPSKLVECRICHEEDEDSN 73
+GN + T D+R A++ T + K++G+ + + CRICHE + N
Sbjct: 17 TGNAALSKTVEEADNRRAQYVTQVTAKDGRLLSTVIKALGTQSDRPI-CRICHEGQDVCN 75
Query: 74 ME---IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
E PC C G+L H+ C+++W + + CE+C ++
Sbjct: 76 SEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEFT 117
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 16 STIEAAIESGNGSQQATPSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICHEEDEDSNME 75
S + A G A +++D R +D +PS CRICHE N+
Sbjct: 23 SKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALD-----TPSDCPFCRICHEGANGENLL 77
Query: 76 IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
PC C G+L H+ C+++W + + CE+C ++
Sbjct: 78 SPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 20 AAIESGNGSQQATPSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICH-EEDEDSNMEIPC 78
+A S N S+ ++P+ TA S R+ PS CRICH E DE+S + PC
Sbjct: 45 SASRSSNISKASSPTTG---TAPRSQSRL----SVCPSTQDICRICHCEGDEESPLITPC 97
Query: 79 SCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
C G+L++ H+ C+ +W CE+C+ +
Sbjct: 98 RCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 55 SPSKLVECRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
+PS CRICH E D++S + PC C GSL + H+ C+Q+W CE+C+ ++
Sbjct: 69 TPSNQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 126
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 20 AAIESGNGSQQATPSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICH-EEDEDSNMEIPC 78
+A S N S+ ++P+ TA S R+ PS CRICH E DE+S + PC
Sbjct: 45 SASRSSNISKASSPTTG---TAPRSQSRL----SVCPSTQDICRICHCEGDEESPLITPC 97
Query: 79 SCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
C G+L++ H+ C+ +W CE+C+ +
Sbjct: 98 RCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
+CRIC + E + PC C GS++ H+ C+ RW +E+G +CE+C +Y
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
+CRIC + E + PC C GS++ H+ C+ RW +E+G +CE+C +Y
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
C+IC + E + PC C GS++Y H+ C+ +W +E+G TCE+C +Y+
Sbjct: 168 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYH 218
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
C+IC + E + PC C GS++Y H+ C+ +W +E+G TCE+C +Y+
Sbjct: 166 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYH 216
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 55 SPSKLVECRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
+PS CRICH E D++S + PC C GSL + H+ C+Q+W CE+C+ ++
Sbjct: 73 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 55 SPSKLVECRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
+PS CRICH E D++S + PC C GSL + H+ C+Q+W CE+C+ ++
Sbjct: 71 TPSNQDICRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEF 128
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
C+IC + E + PC C GS++Y H+ C+ +W +E+G TCE+C +Y+
Sbjct: 170 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYH 220
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 55 SPSKLVECRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
+PS CRICH E D++S + PC C GSL + H+ C+Q+W CE+C+ ++
Sbjct: 46 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEF 103
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 55 SPSKLVECRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
+PS CRICH E D++S + PC C GSL + H+ C+Q+W CE+C+ ++
Sbjct: 46 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEF 103
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
+PS CRICHE ++ PC C G+L H+ C++RW + + CE+C ++
Sbjct: 57 TPSDGPFCRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEF 113
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 62 CRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
CR+C E DS + PC C GS++Y H++C+ W T CE+C+ ++
Sbjct: 8 CRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKF 58
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
CRIC + E + PC C GS++ H C+ +W +E+G +CE+C +Y
Sbjct: 143 CRICFQGPEQGELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQ 193
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 16 STIEAAIESGNGSQQATPSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICHEEDEDSNME 75
S + A G A +++D R +D S S CRICHE N+
Sbjct: 23 SKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALD-----SQSDCPFCRICHEGANGENLL 77
Query: 76 IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
PC C G+L H+ C+++W + + CE+C ++
Sbjct: 78 SPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 17 TIEAAIESGNGSQQAT--PSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICHEEDEDSNM 74
T+E NG Q SAKD + ST + SS + CRICHE ++
Sbjct: 25 TVEDCSSLVNGQPQYVMQVSAKDGQL--LSTVVRTLTTQSSFNDHPMCRICHEGSTQEDL 82
Query: 75 EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGGN 127
PC C G+L HR C++ W + + CE+C +++ P PL + N
Sbjct: 83 LSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVE-RKPRPLVEWLRN 134
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
CRIC + E + PC C GS+K H+ C+ +W +E+G +CE+C +Y+
Sbjct: 163 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH 213
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPL 121
CRICHE ++ PC C G+L HR C++ W + + CE+C +++ P PL
Sbjct: 69 CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVE-RKPRPL 127
Query: 122 FRYGGN 127
+ N
Sbjct: 128 VEWLRN 133
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
CRIC + E + PC C GS+K H+ C+ +W +E+G +CE+C +Y+
Sbjct: 162 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH 212
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
CRICHE ++ PC C G+L HR C++ W + + CE+C ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPL 121
CRICHE ++ PC C G+L HR C++ W + + CE+C ++ P PL
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVE-RKPRPL 129
Query: 122 FRYGGN 127
+ N
Sbjct: 130 VEWLRN 135
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
CRICHE ++ PC C G+L HR C++ W + + CE+C ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 16 STIEAAIESGNGSQQATPSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICHEEDEDSNME 75
S + A G A +++D R +D +PS CRICHE +
Sbjct: 23 SKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALD-----TPSDGPFCRICHEGANGECLL 77
Query: 76 IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
PC C G+L H+ C+++W + + CE+C ++
Sbjct: 78 SPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
CRICHE ++ PC C G+L HR C++ W + + CE+C ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 50 KSIGSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109
K++G+ + CRICHE + PC C G+L H+ C+++W + + CE+C
Sbjct: 53 KALGTQSDGPI-CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHT 111
Query: 110 QY 111
++
Sbjct: 112 EF 113
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 62 CRICH-EEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGD--------TTCEICREQ 110
CRIC SN+ I PC C GSL+Y H++C+++W K + TTCE+C+E+
Sbjct: 553 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 50 KSIGSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109
K++G+ + CRICHE + PC C G+L H+ C+++W + + CE+C
Sbjct: 53 KALGTQSDGPI-CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHT 111
Query: 110 QY 111
++
Sbjct: 112 EF 113
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 62 CRICH-EEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGD--------TTCEICREQ 110
CRIC SN+ I PC C GSL+Y H++C+++W K + TTCE+C+E+
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 612
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 62 CRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ--YNPGYTAP 118
CR+C E + + PC C GS+K+ H++C+ +W CE+C+ + + P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 119 PP 120
P
Sbjct: 69 MP 70
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 62 CRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ--YNPGYTAP 118
CR+C E + + PC C GS+K+ H++C+ +W CE+C+ + + P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 119 PP 120
P
Sbjct: 69 MP 70
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 62 CRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ--YNPGYTAP 118
CR+C E + + PC C GS+K+ H++C+ +W CE+C+ + + P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 119 PP 120
P
Sbjct: 69 MP 70
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 62 CRICH-EEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGD--------TTCEICREQ 110
CRIC SN+ I PC C GSL+Y H+ C+++W K + TTCE+C+E+
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEK 610
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 62 CRICH-EEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGD--------TTCEICREQ 110
CRIC SN+ I PC C GSL+Y H+ C+++W K + TTCE+C+E+
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEK 610
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5 PE=2
SV=1
Length = 283
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 62 CRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNPGY 115
C +C DED + PC C GS K+ H+ C+QRW +EK G++T + Q N Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 62 CRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNPGY 115
C +C DED + PC C GS K+ H+ C+QRW +EK G++T + Q N Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 62 CRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNPGY 115
C +C DED + PC C GS K+ H+ C+QRW +EK G++T + Q N Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 62 CRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNPGY 115
C +C DED + PC C GS K+ H+ C+QRW +EK G++T + Q N Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 62 CRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNPGY 115
C +C DED + PC C GS K+ H+ C+QRW +EK G++T + Q N Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 62 CRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK--------GDTTCEIC 107
CRIC E ED+ + PC C GS+KY H C+ W K D C+IC
Sbjct: 39 CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDIC 93
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5 PE=2
SV=1
Length = 281
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 62 CRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNPGY 115
C +C DED + PC C GS K+ H+ C+QRW +EK G++T + Q N Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
C IC EE + + PC+C G L H +C+ W +T C++CR Y
Sbjct: 15 CWICREEVGNEGIH-PCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIY 63
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 62 CRIC---HEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK------GDTTCEICREQYN 112
C +C +ED + PC C G K+ H+ C+QRW +EK G +C C +Y
Sbjct: 12 CWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSCPQCGTEYR 71
Query: 113 PGYTAPPPLFRY 124
+ P+ +
Sbjct: 72 IVFPKMGPVVYF 83
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
C IC+EE + C C G L+ HR C+ W +T C+IC YN
Sbjct: 9 CWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58
>sp|Q6TV02|LAP_YMTV5 E3 ubiquitin-protein ligase LAP OS=Yaba monkey tumor virus (strain
VR587) GN=LAP PE=3 SV=1
Length = 156
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 62 CRICHEE-DEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
C IC++ DE +N C C K H KC+Q W N C++C+ +YN
Sbjct: 5 CWICNDTCDERNNF---CICSEEYKIVHLKCMQSWINYSKKVECDLCKNKYN 53
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 62 CRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNEK--------GDTTCEICRE 109
CRIC + + PC C GSL++ H++C+++W K TCE+C++
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 62 CRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNEKGDT--------TCEICRE 109
CRIC + PC C GSL++ H++C+++W K + TCE+C++
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 37.7 bits (86), Expect = 0.048, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYA-HRKCVQRWCNEKGDTTCEICREQ 110
S EC IC+ + ++P C + K H C+ +W G+ TC +CR +
Sbjct: 1503 SGFEECAICYSILHAVDRKLPSKTCPTCKNKFHGACLYKWFRSSGNNTCPLCRSE 1557
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,528,127
Number of Sequences: 539616
Number of extensions: 3313917
Number of successful extensions: 7647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 7568
Number of HSP's gapped (non-prelim): 113
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)