Query 028881
Match_columns 202
No_of_seqs 231 out of 802
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 5.8E-20 2E-24 127.9 3.7 55 58-113 5-59 (60)
2 2d8s_A Cellular modulator of i 99.7 8.5E-18 2.9E-22 122.8 5.3 64 56-119 12-76 (80)
3 2kiz_A E3 ubiquitin-protein li 98.1 2.3E-06 7.8E-11 58.4 4.3 53 55-114 10-64 (69)
4 2ep4_A Ring finger protein 24; 98.1 6E-06 2E-10 57.0 5.5 50 57-113 13-64 (74)
5 2ect_A Ring finger protein 126 98.0 4.1E-06 1.4E-10 58.4 3.1 52 56-114 12-65 (78)
6 2ecm_A Ring finger and CHY zin 97.9 4.5E-06 1.5E-10 54.2 2.5 48 58-112 4-54 (55)
7 1v87_A Deltex protein 2; ring- 97.9 8.1E-06 2.8E-10 60.7 3.8 51 59-114 25-95 (114)
8 1x4j_A Ring finger protein 38; 97.9 5.2E-06 1.8E-10 57.6 2.5 51 56-113 20-72 (75)
9 2ecl_A Ring-box protein 2; RNF 97.8 6.1E-06 2.1E-10 58.9 1.6 27 85-113 50-76 (81)
10 1chc_A Equine herpes virus-1 r 97.7 2E-05 6.9E-10 53.3 3.6 49 58-113 4-52 (68)
11 2ct2_A Tripartite motif protei 97.7 2.8E-05 9.6E-10 54.7 4.2 53 56-113 12-68 (88)
12 1iym_A EL5; ring-H2 finger, ub 97.7 8.4E-06 2.9E-10 53.0 1.3 48 58-112 4-54 (55)
13 2l0b_A E3 ubiquitin-protein li 97.7 1.9E-05 6.7E-10 57.2 3.3 51 56-113 37-89 (91)
14 2ea6_A Ring finger protein 4; 97.7 1E-05 3.5E-10 54.4 1.7 51 56-113 12-68 (69)
15 2yur_A Retinoblastoma-binding 97.7 2E-05 6.8E-10 54.8 3.2 51 56-112 12-63 (74)
16 2ecv_A Tripartite motif-contai 97.6 6.6E-05 2.3E-09 52.1 5.1 53 56-114 16-72 (85)
17 2d8t_A Dactylidin, ring finger 97.6 1.1E-05 3.8E-10 55.5 0.9 51 56-114 12-62 (71)
18 2ecn_A Ring finger protein 141 97.6 1.7E-05 5.7E-10 54.1 1.7 49 57-114 13-61 (70)
19 2ecw_A Tripartite motif-contai 97.6 4.9E-05 1.7E-09 52.8 4.1 51 57-113 17-71 (85)
20 2ecy_A TNF receptor-associated 97.6 3.1E-05 1.1E-09 52.4 2.8 52 55-113 11-62 (66)
21 2ysl_A Tripartite motif-contai 97.6 2.8E-05 9.5E-10 53.2 2.4 53 55-113 16-69 (73)
22 2csy_A Zinc finger protein 183 97.6 6.3E-05 2.2E-09 52.8 4.0 49 56-112 12-60 (81)
23 2djb_A Polycomb group ring fin 97.5 7E-05 2.4E-09 51.5 3.7 50 57-114 13-63 (72)
24 3ztg_A E3 ubiquitin-protein li 97.5 8.6E-05 3E-09 53.1 3.7 52 55-112 9-61 (92)
25 2ct0_A Non-SMC element 1 homol 97.4 7.4E-05 2.5E-09 53.7 3.2 54 56-114 12-65 (74)
26 3ng2_A RNF4, snurf, ring finge 97.4 3.2E-05 1.1E-09 52.4 1.0 52 56-114 7-64 (71)
27 2xeu_A Ring finger protein 4; 97.4 2.4E-05 8.2E-10 51.8 0.0 49 58-113 2-56 (64)
28 1t1h_A Gspef-atpub14, armadill 97.4 8.8E-05 3E-09 51.5 2.8 52 56-114 5-56 (78)
29 3dpl_R Ring-box protein 1; ubi 97.3 8.9E-05 3.1E-09 56.1 2.6 47 59-112 37-100 (106)
30 2ecj_A Tripartite motif-contai 97.3 0.00014 4.6E-09 47.4 3.1 46 56-107 12-58 (58)
31 2ysj_A Tripartite motif-contai 97.3 0.00018 6.1E-09 48.0 3.5 47 55-107 16-63 (63)
32 2egp_A Tripartite motif-contai 97.2 7.4E-05 2.5E-09 51.6 0.9 52 56-113 9-65 (79)
33 3lrq_A E3 ubiquitin-protein li 97.0 0.00023 7.7E-09 52.3 1.9 50 57-113 20-70 (100)
34 1g25_A CDK-activating kinase a 97.0 0.00039 1.3E-08 46.7 2.9 49 59-113 3-55 (65)
35 1jm7_A BRCA1, breast cancer ty 96.9 0.00051 1.8E-08 50.3 3.2 50 59-114 21-71 (112)
36 4a0k_B E3 ubiquitin-protein li 96.9 0.00018 6.2E-09 55.7 0.3 46 60-112 49-111 (117)
37 1e4u_A Transcriptional repress 96.8 0.00083 2.8E-08 48.0 3.6 54 57-114 9-63 (78)
38 3fl2_A E3 ubiquitin-protein li 96.8 0.00064 2.2E-08 51.3 3.1 48 59-113 52-99 (124)
39 2y43_A E3 ubiquitin-protein li 96.8 0.00041 1.4E-08 50.3 1.6 48 58-113 21-69 (99)
40 4ayc_A E3 ubiquitin-protein li 96.7 0.00035 1.2E-08 54.0 0.9 45 60-112 54-98 (138)
41 4ap4_A E3 ubiquitin ligase RNF 96.6 0.00028 9.6E-09 52.5 -0.2 51 57-114 5-61 (133)
42 2ckl_B Ubiquitin ligase protei 96.6 0.00068 2.3E-08 53.6 1.8 48 58-112 53-101 (165)
43 1rmd_A RAG1; V(D)J recombinati 96.5 0.0005 1.7E-08 51.2 0.6 50 58-114 22-71 (116)
44 1z6u_A NP95-like ring finger p 96.5 0.0011 3.9E-08 52.4 2.5 50 58-114 77-126 (150)
45 3hct_A TNF receptor-associated 96.5 0.0013 4.4E-08 49.4 2.6 53 55-114 14-66 (118)
46 2ckl_A Polycomb group ring fin 96.4 0.00068 2.3E-08 50.0 0.7 48 58-113 14-62 (108)
47 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.0023 7.7E-08 58.6 2.3 58 55-115 304-375 (381)
48 2y1n_A E3 ubiquitin-protein li 95.9 0.0034 1.2E-07 57.6 2.7 49 59-114 332-380 (389)
49 4ap4_A E3 ubiquitin ligase RNF 95.7 0.0015 5.2E-08 48.4 -0.3 51 57-114 70-126 (133)
50 2kr4_A Ubiquitin conjugation f 95.6 0.0098 3.3E-07 42.6 3.7 50 56-113 11-60 (85)
51 3l11_A E3 ubiquitin-protein li 95.6 0.0013 4.4E-08 48.9 -1.0 50 57-113 13-62 (115)
52 2c2l_A CHIP, carboxy terminus 95.3 0.01 3.4E-07 49.2 3.3 50 57-113 206-255 (281)
53 1jm7_B BARD1, BRCA1-associated 94.9 0.0047 1.6E-07 46.2 0.1 46 58-113 21-67 (117)
54 2vje_B MDM4 protein; proto-onc 94.8 0.0076 2.6E-07 40.8 0.9 49 57-112 5-55 (63)
55 2kre_A Ubiquitin conjugation f 94.6 0.019 6.4E-07 42.5 2.8 50 56-113 26-75 (100)
56 3hcs_A TNF receptor-associated 94.3 0.016 5.6E-07 45.6 2.0 53 55-114 14-66 (170)
57 4ic3_A E3 ubiquitin-protein li 94.3 0.0072 2.5E-07 41.9 -0.1 44 58-113 23-67 (74)
58 1bor_A Transcription factor PM 94.3 0.011 3.6E-07 38.9 0.6 46 57-113 4-49 (56)
59 2yu4_A E3 SUMO-protein ligase 94.2 0.032 1.1E-06 40.4 3.2 50 55-110 3-59 (94)
60 2vje_A E3 ubiquitin-protein li 94.1 0.016 5.4E-07 39.3 1.3 47 58-112 7-56 (64)
61 1wgm_A Ubiquitin conjugation f 93.9 0.033 1.1E-06 41.0 2.8 50 57-113 20-69 (98)
62 3nw0_A Non-structural maintena 93.4 0.04 1.4E-06 46.9 2.8 50 58-113 179-229 (238)
63 3knv_A TNF receptor-associated 93.2 0.0097 3.3E-07 46.5 -1.2 50 55-111 27-76 (141)
64 1wim_A KIAA0161 protein; ring 93.1 0.039 1.3E-06 39.5 2.0 49 58-111 4-62 (94)
65 2ea5_A Cell growth regulator w 93.0 0.099 3.4E-06 35.9 3.8 45 57-113 13-58 (68)
66 2f42_A STIP1 homology and U-bo 92.9 0.043 1.5E-06 45.2 2.2 51 57-114 104-154 (179)
67 2ecg_A Baculoviral IAP repeat- 92.6 0.063 2.1E-06 37.0 2.3 44 58-113 24-68 (75)
68 3t6p_A Baculoviral IAP repeat- 86.0 0.1 3.6E-06 46.7 -1.0 45 58-114 294-339 (345)
69 2lri_C Autoimmune regulator; Z 82.7 0.43 1.5E-05 33.0 1.3 53 54-112 7-61 (66)
70 2bay_A PRE-mRNA splicing facto 82.5 0.52 1.8E-05 31.7 1.6 46 60-113 4-50 (61)
71 3htk_C E3 SUMO-protein ligase 82.0 0.56 1.9E-05 41.0 2.0 53 56-114 178-233 (267)
72 2yho_A E3 ubiquitin-protein li 80.9 0.28 9.5E-06 34.4 -0.3 44 59-114 18-62 (79)
73 1weu_A Inhibitor of growth fam 75.4 1.5 5.2E-05 32.3 2.3 55 52-112 29-87 (91)
74 1wen_A Inhibitor of growth fam 60.2 2 7E-05 29.9 0.2 53 53-111 10-66 (71)
75 2ysm_A Myeloid/lymphoid or mix 59.4 1.5 5E-05 32.4 -0.7 50 55-107 3-54 (111)
76 1weo_A Cellulose synthase, cat 58.1 17 0.00059 27.0 5.0 54 57-113 14-70 (93)
77 2k16_A Transcription initiatio 56.2 0.98 3.4E-05 31.2 -2.0 53 57-112 16-70 (75)
78 2l43_A N-teminal domain from h 55.5 1.5 5.1E-05 31.8 -1.2 54 56-111 22-76 (88)
79 2ku3_A Bromodomain-containing 54.2 2 6.8E-05 30.0 -0.7 53 55-110 12-66 (71)
80 2ko5_A Ring finger protein Z; 47.9 6.4 0.00022 29.7 1.2 50 57-115 26-75 (99)
81 1f62_A Transcription factor WS 46.4 3.4 0.00012 26.3 -0.4 46 61-109 2-49 (51)
82 2vpb_A Hpygo1, pygopus homolog 40.8 8.6 0.0003 26.2 0.9 34 56-92 5-40 (65)
83 1e8j_A Rubredoxin; iron-sulfur 39.0 23 0.00078 23.3 2.8 35 101-135 3-40 (52)
84 2l5u_A Chromodomain-helicase-D 39.0 7.1 0.00024 26.0 0.2 49 56-110 8-58 (61)
85 1p1p_A AA-conotoxin PIVA; neur 37.0 12 0.0004 21.5 0.9 17 72-88 8-24 (26)
86 4rxn_A Rubredoxin; electron tr 34.9 16 0.00054 24.4 1.4 36 101-136 3-41 (54)
87 2vnf_A ING 4, P29ING4, inhibit 34.6 1.6 5.6E-05 29.3 -3.6 49 55-109 6-58 (60)
88 1wep_A PHF8; structural genomi 32.5 36 0.0012 23.5 3.1 53 57-113 10-66 (79)
89 2ri7_A Nucleosome-remodeling f 31.8 6.7 0.00023 30.7 -1.0 51 57-111 6-60 (174)
90 2lbm_A Transcriptional regulat 31.6 23 0.00078 27.9 2.1 46 57-108 61-115 (142)
91 2e6r_A Jumonji/ARID domain-con 30.5 2.7 9.4E-05 30.5 -3.2 51 57-110 14-66 (92)
92 2jny_A Uncharacterized BCR; st 29.1 14 0.00046 25.7 0.3 32 73-114 10-41 (67)
93 1znf_A 31ST zinc finger from X 28.8 19 0.00066 17.7 0.9 12 102-113 2-13 (27)
94 2g6q_A Inhibitor of growth pro 28.7 2.5 8.5E-05 28.7 -3.5 49 55-109 7-59 (62)
95 3ql9_A Transcriptional regulat 28.3 22 0.00075 27.6 1.5 47 56-108 54-109 (129)
96 1dx8_A Rubredoxin; electron tr 28.0 57 0.0019 22.6 3.4 36 101-136 7-45 (70)
97 2yql_A PHD finger protein 21A; 28.0 3.7 0.00013 26.9 -2.6 47 56-108 6-54 (56)
98 3u5n_A E3 ubiquitin-protein li 27.9 5.2 0.00018 32.5 -2.3 49 58-112 6-56 (207)
99 1ard_A Yeast transcription fac 27.2 21 0.0007 17.8 0.8 12 102-113 3-14 (29)
100 2kn9_A Rubredoxin; metalloprot 26.5 30 0.001 25.0 1.8 36 101-136 27-65 (81)
101 2v3b_B Rubredoxin 2, rubredoxi 26.5 31 0.0011 22.9 1.8 34 102-135 4-40 (55)
102 3v43_A Histone acetyltransfera 26.1 25 0.00085 25.9 1.4 34 58-94 4-43 (112)
103 2jmi_A Protein YNG1, ING1 homo 25.7 5.4 0.00018 29.2 -2.4 52 55-110 22-76 (90)
104 2m0f_A Zinc finger and BTB dom 25.6 20 0.0007 17.8 0.6 11 102-112 3-13 (29)
105 1wev_A Riken cDNA 1110020M19; 25.5 2.7 9.3E-05 30.2 -4.0 53 58-113 15-75 (88)
106 1wem_A Death associated transc 25.4 20 0.0007 24.5 0.7 51 59-113 16-73 (76)
107 2lvu_A Zinc finger and BTB dom 31.3 15 0.00051 18.2 0.0 12 102-113 3-14 (26)
108 1wew_A DNA-binding family prot 24.7 55 0.0019 22.5 2.9 52 55-111 12-73 (78)
109 2kvh_A Zinc finger and BTB dom 24.6 20 0.00068 17.9 0.4 13 101-113 3-15 (27)
110 1yk4_A Rubredoxin, RD; electro 23.7 28 0.00095 22.8 1.1 14 102-115 3-16 (52)
111 4gne_A Histone-lysine N-methyl 22.5 15 0.00051 27.6 -0.5 46 56-107 12-59 (107)
112 1s24_A Rubredoxin 2; electron 22.4 40 0.0014 24.6 1.9 35 101-135 35-72 (87)
113 2lv9_A Histone-lysine N-methyl 22.4 28 0.00097 25.2 1.0 50 55-108 24-74 (98)
114 2rsd_A E3 SUMO-protein ligase 22.3 18 0.00062 24.4 -0.1 33 55-92 6-41 (68)
115 2m0e_A Zinc finger and BTB dom 21.9 30 0.001 17.0 0.8 12 102-113 3-14 (29)
116 1klr_A Zinc finger Y-chromosom 21.9 30 0.001 17.1 0.8 12 102-113 3-14 (30)
117 2lat_A Dolichyl-diphosphooligo 21.9 89 0.0031 19.4 3.1 22 172-193 9-30 (37)
118 2kvf_A Zinc finger and BTB dom 21.8 24 0.00083 17.6 0.4 12 102-113 4-15 (28)
119 3kv5_D JMJC domain-containing 21.7 10 0.00035 35.3 -1.9 54 57-114 35-92 (488)
120 2kvg_A Zinc finger and BTB dom 21.2 23 0.00078 17.9 0.2 12 102-113 4-15 (27)
121 1rik_A E6APC1 peptide; E6-bind 20.8 26 0.0009 17.4 0.4 12 102-113 3-14 (29)
122 1paa_A Yeast transcription fac 20.7 33 0.0011 17.2 0.8 12 102-113 3-14 (30)
123 1p7a_A BF3, BKLF, kruppel-like 20.3 33 0.0011 18.4 0.8 13 101-113 11-23 (37)
124 2elr_A Zinc finger protein 406 20.3 33 0.0011 18.2 0.8 13 101-113 9-21 (36)
125 2lvt_A Zinc finger and BTB dom 25.0 23 0.00077 17.9 0.0 12 102-113 3-14 (29)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.78 E-value=5.8e-20 Score=127.88 Aligned_cols=55 Identities=35% Similarity=0.790 Sum_probs=50.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...||||+++.+ ++++.||.|+|+++|||+.||++|++.+++.+||+|+++|+.
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4679999998754 468999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-18 Score=122.81 Aligned_cols=64 Identities=34% Similarity=0.833 Sum_probs=55.3
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccCccCCC
Q 028881 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPP 119 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~yt~p~ 119 (202)
+.+...||||+++.+ +++++.||.|+|+++++|+.||++|+..++..+|++|+++|....+.+|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 345678999998753 5689999999999999999999999999998999999999987765544
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.12 E-value=2.3e-06 Score=58.35 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=40.9
Q ss_pred CCCCCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 55 SPSKLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~--~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.......|.||++.-. +.....||. +.+|..|+.+|+..++ .|++|+..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 3455678999988753 234567875 6799999999998764 699999988754
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=6e-06 Score=56.96 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCCCCCC--cccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~--Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.....|.||++...+.. ...||. +..|..|+.+|++.+. .|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 44668999999864322 234764 6899999999998764 89999998864
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.96 E-value=4.1e-06 Score=58.38 Aligned_cols=52 Identities=23% Similarity=0.701 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~--~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
......|.||++...+. ....||. +.+|..||.+|++.+ ..|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCc
Confidence 34567899999886432 2446765 689999999999654 5899999998754
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.92 E-value=4.5e-06 Score=54.22 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 58 KLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~---~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
....|.||++.-.+ .....||. +.+|..|+.+|+..+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45689999987532 35678875 689999999999887 68999998764
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.89 E-value=8.1e-06 Score=60.70 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=38.7
Q ss_pred CCeeeEeccCCCCC--------------Cc---ccccccCCCCccccHHHHHHHHHh---cCCccccccccccccC
Q 028881 59 LVECRICHEEDEDS--------------NM---EIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~~--------------~L---i~PC~C~GslkyvH~~CL~rW~~~---kg~~~CEICk~~y~~~ 114 (202)
...|-||++.-.+. .. ..||. +..|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 35899999874321 11 56776 68999999999975 4567999999999754
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=5.2e-06 Score=57.64 Aligned_cols=51 Identities=33% Similarity=0.748 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~--~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
..+...|.||++...+. ....||. +..|..|+.+|++.+ ..|++|++++.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 34567899999885432 3567875 689999999999875 489999998864
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=6.1e-06 Score=58.86 Aligned_cols=27 Identities=19% Similarity=0.719 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 028881 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 85 kyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+..|..||.+|++.++ +|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 7899999999998764 89999999864
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.75 E-value=2e-05 Score=53.28 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=39.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
....|.||++...+.....||+ +..|..|+.+|+..+ ..|++|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 3568999998875444778876 679999999999765 589999998863
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.8e-05 Score=54.72 Aligned_cols=53 Identities=19% Similarity=0.491 Sum_probs=41.9
Q ss_pred CCCCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHhc-CCcccccccccccc
Q 028881 56 PSKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~---~~Li~PC~C~GslkyvH~~CL~rW~~~k-g~~~CEICk~~y~~ 113 (202)
..+...|.||++...+ .+...||. +.+|..|+.+|++.+ +...|++|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456789999988643 25667875 789999999999876 56899999998864
No 12
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.72 E-value=8.4e-06 Score=53.02 Aligned_cols=48 Identities=35% Similarity=0.749 Sum_probs=36.3
Q ss_pred CCCeeeEeccCCCC--CCcccc-cccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 58 KLVECRICHEEDED--SNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~--~~Li~P-C~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
+...|-||++...+ .....| |+ +..|..|+.+|++. ...|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 35679999988543 345555 64 68999999999966 458999998764
No 13
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.71 E-value=1.9e-05 Score=57.17 Aligned_cols=51 Identities=33% Similarity=0.815 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCC--CCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 56 PSKLVECRICHEEDED--SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~--~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
......|-||++...+ .....||. +..|..|+.+|+..+ ..|++|++++.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 4567799999987543 24567865 689999999999754 489999998864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=1e-05 Score=54.44 Aligned_cols=51 Identities=25% Similarity=0.576 Sum_probs=38.9
Q ss_pred CCCCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 56 PSKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~------~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
..+...|-||++...+ .....||. +.+|..|+.+|+.. ...|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 3456789999987421 12567875 68999999999987 4589999998863
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.71 E-value=2e-05 Score=54.84 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=41.5
Q ss_pred CCCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~P-C~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..+...|.||++.-. ++...| |. +..|+.||.+|+..++...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT-TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh-CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345678999988765 467778 65 6899999999999888789999999754
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=6.6e-05 Score=52.06 Aligned_cols=53 Identities=26% Similarity=0.645 Sum_probs=42.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh----cCCccccccccccccC
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE----KGDTTCEICREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~----kg~~~CEICk~~y~~~ 114 (202)
..+...|.||++...+ +...||. +.+|..|+.+|+.. .+...|++|+..+...
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3456789999988653 5667875 67899999999987 3578999999998753
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=1.1e-05 Score=55.52 Aligned_cols=51 Identities=22% Similarity=0.484 Sum_probs=40.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
..+...|.||++... ++...||. +..|..|+.+|+..+ ..|++|++.+...
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCV-HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCS-SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccC-CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 345678999998764 35677875 679999999999754 6899999998744
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.7e-05 Score=54.12 Aligned_cols=49 Identities=31% Similarity=0.805 Sum_probs=40.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.+...|.||++...+ ...||. +.+|..|+.+|+. +...|++|++++...
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 456789999998755 778885 6799999999997 567999999988743
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.62 E-value=4.9e-05 Score=52.75 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=41.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc----CCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK----GDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k----g~~~CEICk~~y~~ 113 (202)
.+...|.||++... .+...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLK-EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCS-SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhC-cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45678999988764 36677865 679999999999884 47899999998874
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=3.1e-05 Score=52.40 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
...+...|.||++... ++...||. +..|+.|+.+|++ ++...|++|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLC-SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEES-SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhc-CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 3455788999987754 35557776 6789999999997 456789999998864
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.8e-05 Score=53.15 Aligned_cols=53 Identities=21% Similarity=0.432 Sum_probs=41.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh-cCCcccccccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEICREQYNP 113 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~-kg~~~CEICk~~y~~ 113 (202)
...+...|.||++... ++...||. +.+|..|+.+|++. ++...|++|++++..
T Consensus 16 ~~~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCS-SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccC-CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3455779999998765 35566775 67999999999974 457799999998864
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=6.3e-05 Score=52.79 Aligned_cols=49 Identities=18% Similarity=0.458 Sum_probs=39.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
......|.||++... ++.+.||. +..|..|+.+|+.. ...|++|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ-NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCC-SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhc-CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 345678999988764 36678876 67899999999975 458999999986
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=7e-05 Score=51.54 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li-~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.+...|.||++...+ +.. .||. +..|..|+.+|++. ...|++|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID-ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS-CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC-cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 446789999887654 444 4876 67899999999976 46899999998743
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.46 E-value=8.6e-05 Score=53.05 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=42.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~P-C~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
...+...|-||++.-. ++...| |. +..++.||.+|+..++...|++|+..+.
T Consensus 9 ~~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456789999998765 477778 65 6789999999999888899999999973
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=7.4e-05 Score=53.69 Aligned_cols=54 Identities=20% Similarity=0.542 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+.....|-||++.-..+. .-+ .|. .-.|..||.+|++.++..+|++|++++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~-~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-SCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-ECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCC-ccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 345778999988764321 111 442 578999999999988778999999988643
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.43 E-value=3.2e-05 Score=52.43 Aligned_cols=52 Identities=25% Similarity=0.558 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 56 PSKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~------~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+.+...|-||++.-.+ .....||. +..|..|+.+|++.+ ..|++|++++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 4557789999987421 12567876 689999999999876 4899999998743
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.39 E-value=2.4e-05 Score=51.83 Aligned_cols=49 Identities=22% Similarity=0.566 Sum_probs=37.7
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~------~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|.||++...+ .....||. +..|..|+.+|++. ...|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 35689999887421 12567776 67999999999987 4599999998874
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.37 E-value=8.8e-05 Score=51.46 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=41.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
..+...|.||++.-. .+...||+ +..++.|+.+|+.. +..+|++|++++...
T Consensus 5 ~~~~~~C~IC~~~~~-~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMK-DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCS-SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSSC
T ss_pred CcccCCCCCcccccc-CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCChh
Confidence 345778999988764 36777876 67899999999964 467899999988643
No 29
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.33 E-value=8.9e-05 Score=56.14 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=34.6
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 59 LVECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~~~~-----------------~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
...|-||++.-++. ....||. +..|..||.+|+.. ..+|++|+++|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 34688887764321 1335665 78999999999976 468999999975
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.00014 Score=47.40 Aligned_cols=46 Identities=24% Similarity=0.683 Sum_probs=35.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh-cCCcccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEIC 107 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~-kg~~~CEIC 107 (202)
..+...|.||++...+ +...||. +..|..|+++|++. ++...|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999988653 5667875 67899999999875 567789887
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00018 Score=48.04 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=36.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc-CCcccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEIC 107 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k-g~~~CEIC 107 (202)
...+...|.||++... ++...||. +..|+.||++|++.+ +...|++|
T Consensus 16 ~~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS-SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC-CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3455778999998765 36667875 679999999999864 56789988
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.21 E-value=7.4e-05 Score=51.62 Aligned_cols=52 Identities=25% Similarity=0.554 Sum_probs=41.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc-----CCcccccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k-----g~~~CEICk~~y~~ 113 (202)
..+...|.||++... ++...||. +..++.|+.+|+..+ +...|++|+..+..
T Consensus 9 ~~~~~~C~IC~~~~~-~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLT-EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECS-SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccC-CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345778999998764 36667875 678999999999873 47899999999874
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.02 E-value=0.00023 Score=52.31 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li-~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+...|-||++.-.+ +.. .||+ +..|..||.+|+..++ ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 345689999988753 555 8886 6799999999998875 689999999864
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.01 E-value=0.00039 Score=46.69 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=36.6
Q ss_pred CCeeeEecc-CC--CCCC-cccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 59 LVECRICHE-ED--EDSN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 59 ~~~CRIC~e-~~--~~~~-Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
...|-||++ .. .... +..||+ +.++..|+.+|+.. +...|++|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 467999998 32 2111 457887 67899999999864 46789999998864
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.93 E-value=0.00051 Score=50.30 Aligned_cols=50 Identities=24% Similarity=0.629 Sum_probs=39.7
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc-CCccccccccccccC
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k-g~~~CEICk~~y~~~ 114 (202)
...|.||++.-. .+...||+ +.+|..|+.+|+..+ +...|++|+..+...
T Consensus 21 ~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 457999988764 46667875 678999999999864 457899999988753
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.87 E-value=0.00018 Score=55.68 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=0.0
Q ss_pred CeeeEeccCCCCC-----------------CcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 60 VECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 60 ~~CRIC~e~~~~~-----------------~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..|-||++.-++. .+..||. +..|..||.+|+..+ ..|++|+++|.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 4799998774321 1223554 789999999999874 58999999986
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.84 E-value=0.00083 Score=47.99 Aligned_cols=54 Identities=31% Similarity=0.627 Sum_probs=42.2
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.+...|-||++.-. ......||.|. +.+++.|+.+|... +...|++|+..|...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 45678999999764 34567888883 56899999998754 567999999999743
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.83 E-value=0.00064 Score=51.31 Aligned_cols=48 Identities=19% Similarity=0.426 Sum_probs=38.8
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
...|.||++.-. .+...||+ +..|+.|+.+|+. .+...|++|+..+..
T Consensus 52 ~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF-RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc-CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 468999998765 46667875 6789999999998 445689999999975
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.77 E-value=0.00041 Score=50.29 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=37.8
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~-PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|.||++.-.+ +... ||+ +..|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 35689999988654 4444 776 689999999999754 689999999874
No 40
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.73 E-value=0.00035 Score=54.02 Aligned_cols=45 Identities=27% Similarity=0.714 Sum_probs=36.8
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 60 VECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 60 ~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..|.||++... .+...||+ +..|..|+.+|+..+ ..|++|++++.
T Consensus 54 ~~C~iC~~~~~-~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFI-EAVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCS-SEEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred CCCcccCcccC-CceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 47999998764 36777875 689999999999654 58999999885
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.64 E-value=0.00028 Score=52.52 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=39.0
Q ss_pred CCCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 57 SKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~------~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.+...|-||++...+ .....||+ +..|..|+.+|+..+. .|++|++.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCccc
Confidence 346789999987421 12677876 6899999999997654 999999998743
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.61 E-value=0.00068 Score=53.57 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~-PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
....|-||++.-.+ +... ||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 45589999887654 4444 776 68999999999984 4578999999985
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.53 E-value=0.0005 Score=51.22 Aligned_cols=50 Identities=26% Similarity=0.538 Sum_probs=39.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+...|.||++.-. .+...||. +..+..|+.+|+..+ ...|++|+.++...
T Consensus 22 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhc-CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 4568999988765 36667875 678999999999874 45799999998754
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0011 Score=52.36 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=40.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+...|.||++.-. .+...||. +.+++.||.+|+.. +...|++|++.+...
T Consensus 77 ~~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc-CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 4568999988764 46678886 67899999999985 456899999998754
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.49 E-value=0.0013 Score=49.40 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=41.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
...+...|.||++.-. .+...||. +..++.|+.+|+..++. .|++|+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALR-EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhc-CeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 3445678999997764 35667765 67999999999987654 899999998753
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.43 E-value=0.00068 Score=49.99 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=38.3
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~-PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|.||++.-.+ +... ||+ +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 35689999887653 5554 886 678999999999764 799999999874
No 47
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.06 E-value=0.0023 Score=58.60 Aligned_cols=58 Identities=21% Similarity=0.666 Sum_probs=41.8
Q ss_pred CCCCCCeeeEeccCCCC-CCc-ccccc---cCCCCccccHHHHHHHHHhcCC---------ccccccccccccCc
Q 028881 55 SPSKLVECRICHEEDED-SNM-EIPCS---CCGSLKYAHRKCVQRWCNEKGD---------TTCEICREQYNPGY 115 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~-~~L-i~PC~---C~GslkyvH~~CL~rW~~~kg~---------~~CEICk~~y~~~y 115 (202)
......+|-||++.-.+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....|
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 33567899999988643 222 34463 53 78999999999987532 57999999877554
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.90 E-value=0.0034 Score=57.59 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=39.4
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
...|.||++... .+...||+ +..|..|+.+|+.. +...|++|+.++...
T Consensus 332 ~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 478999988764 47788987 45699999999974 456899999988743
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.72 E-value=0.0015 Score=48.43 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=38.2
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 57 SKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~----~--~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.+...|-||++...+ . ....||+ +..|..|+.+|+..+. .|++|+..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHCS--BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcCC--CCCCCCCcCChh
Confidence 456789999876421 1 2455664 7899999999998754 999999998743
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.62 E-value=0.0098 Score=42.56 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
..+...|-||++--. .+.+.||+ +-.-+.|+++|+.. ..+|++|++++..
T Consensus 11 ~p~~~~CpI~~~~m~-dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT-DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhc-CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 345789999988765 38888864 46789999999985 4689999998864
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.61 E-value=0.0013 Score=48.87 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+...|.||++.-. .+...||. +..+..|+.+|+.. +...|++|++.+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34568999997764 46667876 67999999999964 45789999999863
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.32 E-value=0.01 Score=49.15 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=39.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.....|-||++--. .|.+.||+ +-.-+.||.+|+..++.. |++|+.++..
T Consensus 206 ~~~~~c~i~~~~~~-dPv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS-SEEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CcccCCcCcCCHhc-CCeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 35678999988765 48889974 467799999999876544 9999999864
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.91 E-value=0.0047 Score=46.17 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=37.0
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~-PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|.||++.-. .+... ||+ +..++.|+.+|+. ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~-~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR-EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS-SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhh-CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 4678999988765 35555 876 6789999999987 689999999853
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.78 E-value=0.0076 Score=40.81 Aligned_cols=49 Identities=20% Similarity=0.543 Sum_probs=35.9
Q ss_pred CCCCeeeEeccCCCCCC-cccccccCCCCcc-ccHHHHHHHHHhcCCccccccccccc
Q 028881 57 SKLVECRICHEEDEDSN-MEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~-Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
+....|.||++...+.. +..||+ +. +=..|+.+|.+.+ ..|++|++++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 44668999998764322 234987 44 5789999998654 68999999875
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.63 E-value=0.019 Score=42.54 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=39.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
..+...|-||++--. .|.+.||+ +-.-+.|+.+|+.. ..+|++|++++..
T Consensus 26 ~p~~~~CpI~~~~m~-dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMT-DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCS-SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCccc-CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 345789999988765 48888964 46789999999974 5689999999874
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.31 E-value=0.016 Score=45.62 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=40.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
...+...|-||++.-. .+...||. +.+.+.|+.+|++.++. .|++|+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALR-EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhc-CcEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcchh
Confidence 3455678999998765 36666764 67899999999987653 899999988753
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.31 E-value=0.0072 Score=41.95 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=35.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|.||++... ++...||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 3468999998764 36677986 56 899999999 689999998864
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.25 E-value=0.011 Score=38.95 Aligned_cols=46 Identities=20% Similarity=0.582 Sum_probs=35.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+...|.||++... ++...||. +..+..|+.+| ...|++|++.+..
T Consensus 4 ~~~~~C~IC~~~~~-~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK-CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB-CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC-CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 34667999988765 36778875 56788998773 5689999998864
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.032 Score=40.38 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=38.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHhc----CCccccc--cccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEK----GDTTCEI--CREQ 110 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~P-C~C~GslkyvH~~CL~rW~~~k----g~~~CEI--Ck~~ 110 (202)
+......|-||++.-. .|...| |. +-.-+.||.+|+... +..+|++ |...
T Consensus 3 ~~~~~~~CPI~~~~~~-dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMK-KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCS-SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhc-CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3455678999987765 377776 75 567899999999874 4679999 8766
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.11 E-value=0.016 Score=39.31 Aligned_cols=47 Identities=17% Similarity=0.526 Sum_probs=34.7
Q ss_pred CCCeeeEeccCCCCCCccc--ccccCCCCcc-ccHHHHHHHHHhcCCccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEI--PCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~--PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
+...|.||++...+ .... ||+ +. +=..|+.+|.+. ...|++|++++.
T Consensus 7 ~~~~C~IC~~~~~~-~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN-GCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC-EEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC-EEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 45689999987654 3333 987 34 347999999964 358999999875
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=93.93 E-value=0.033 Score=41.04 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+...|-||++--. .|.+.||. | +-.-+.||++|+.. ..+|++|++++..
T Consensus 20 p~~~~CpI~~~~m~-dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC-DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS-SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc-CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 45778999988765 37888866 1 35679999999986 4589999999874
No 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.43 E-value=0.04 Score=46.93 Aligned_cols=50 Identities=22% Similarity=0.599 Sum_probs=38.5
Q ss_pred CCCeeeEeccCCCCCCcccccc-cCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~-C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
....|-||.+---.+ .-|. |. ...|..|+.+|++.++...|+.|+..++.
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 588999997764322 2232 43 57999999999998888899999998764
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.24 E-value=0.0097 Score=46.54 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=38.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y 111 (202)
...+...|-||++.-. .+...||. +..++.||.+|++. +...|++|+++.
T Consensus 27 ~l~~~~~C~IC~~~~~-~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR-RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhc-CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 3456778999988764 35667776 67899999999964 456899999865
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.11 E-value=0.039 Score=39.55 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=37.1
Q ss_pred CCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHhc---C---Cccccc--ccccc
Q 028881 58 KLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEK---G---DTTCEI--CREQY 111 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li--~PC~C~GslkyvH~~CL~rW~~~k---g---~~~CEI--Ck~~y 111 (202)
+...|-||++......+. .||. +..-+.|+++++..+ | ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 466899999886543443 4787 588999999999764 2 479999 99884
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.98 E-value=0.099 Score=35.87 Aligned_cols=45 Identities=20% Similarity=0.549 Sum_probs=34.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+...|.||++... +....||. +. +-..|+++ ...|++|++.+..
T Consensus 13 ~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 45678999988764 47788997 33 66788873 3689999998864
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=92.90 E-value=0.043 Score=45.17 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=40.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
-....|-||++--. .|.+.||+ +-.=+.|+.+|+...+. +|++|+.++...
T Consensus 104 p~~f~CPI~~elm~-DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGG
T ss_pred cHhhcccCccccCC-CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChh
Confidence 45778999988765 38888874 46789999999987665 799999988753
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.55 E-value=0.063 Score=37.00 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=33.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|.||++... ++...||. +. +...|+++. ..|++|+.++..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 3557999998764 46778986 45 788998643 689999998864
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=85.96 E-value=0.1 Score=46.66 Aligned_cols=45 Identities=24% Similarity=0.653 Sum_probs=36.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHhcCCccccccccccccC
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+...|.||++... ++...||+ +. +...|+.+| ..|++|+..+...
T Consensus 294 ~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 4578999998764 46677987 45 889999998 5899999998743
No 69
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.70 E-value=0.43 Score=33.02 Aligned_cols=53 Identities=13% Similarity=0.317 Sum_probs=36.7
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 028881 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (202)
Q Consensus 54 ~~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~~y~ 112 (202)
+.+.....|.||.+.+ .|+ -| .+=-+..|..||.-.+.. ++.+.|..|...-.
T Consensus 7 ~~~~~~~~C~vC~~~~---~ll-~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 7 QNLAPGARCGVCGDGT---DVL-RC--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TCCCTTCCCTTTSCCT---TCE-EC--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred cCCCCCCCcCCCCCCC---eEE-EC--CCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3455667899997543 333 23 333479999999877765 57899999976543
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=82.53 E-value=0.52 Score=31.70 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=33.3
Q ss_pred CeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 60 VECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 60 ~~CRIC~e~~~~~~Li~-PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
..|.|+++.-. ++.+. ||. .-.=+.|+++|+...+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC-CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 45777766654 35666 443 4678999999998765 49999988763
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=82.00 E-value=0.56 Score=41.05 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCCCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHhcCCccccc--cccccccC
Q 028881 56 PSKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEI--CREQYNPG 114 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~-PC~C~GslkyvH~~CL~rW~~~kg~~~CEI--Ck~~y~~~ 114 (202)
......|-||++.-. .|... .|+ +-.=+.|+.+|+..++...|++ |++.+...
T Consensus 178 ~~~el~CPIcl~~f~-DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYE-APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCS-SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCccc-CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 356778999987654 25543 554 5678999999998878889999 99988643
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=80.93 E-value=0.28 Score=34.45 Aligned_cols=44 Identities=23% Similarity=0.630 Sum_probs=33.0
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHhcCCccccccccccccC
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~Gslky-vH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
...|.||++... +....||+ +. +=..|+.+| ..|++|+..+...
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 458999988754 46778987 33 457898877 3999999998743
No 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.36 E-value=1.5 Score=32.29 Aligned_cols=55 Identities=22% Similarity=0.533 Sum_probs=35.7
Q ss_pred CCCCCCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 028881 52 IGSSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (202)
Q Consensus 52 ~~~~~~~~~~CRIC~e~~~~~~Li~--PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~~y~ 112 (202)
....+.+...| ||..... +.|+. -|.|. ..+.|..||. +.. ++...|+.|...-+
T Consensus 29 ~~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 29 MPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34455677888 9987654 34542 22353 2689999987 333 47899999976543
No 74
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.17 E-value=2 Score=29.92 Aligned_cols=53 Identities=23% Similarity=0.535 Sum_probs=34.1
Q ss_pred CCCCCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHh--cCCcccccccccc
Q 028881 53 GSSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (202)
Q Consensus 53 ~~~~~~~~~CRIC~e~~~~~~Li~--PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~~y 111 (202)
+..+.+...| ||..... +.|+. -|.|. ..+.|..||. +.. ++...|+.|...-
T Consensus 10 ~~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3345667888 8987654 45553 12243 2689999997 433 4788999996543
No 75
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.44 E-value=1.5 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCcccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEIC 107 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEIC 107 (202)
...+...|.||.+.++.++|+ -| .+=-+..|..||.-.... ++.+.|.-|
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcC
Confidence 345677899998877544444 33 333478999999766542 344444433
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.11 E-value=17 Score=27.03 Aligned_cols=54 Identities=24% Similarity=0.569 Sum_probs=36.7
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.....|.||-+.- .++.+..-|.=.+ --|=+.|++-=. ..++..|..||.+|+-
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYEr-keG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYER-REGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHH-HTSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHH-hccCccccccCCcccc
Confidence 3567999998773 3455555555322 247788876544 3478899999999973
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=56.20 E-value=0.98 Score=31.20 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=34.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~~y~ 112 (202)
.+...|.||...+++..|+. |.+=-.+.|..||.--... .+...|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987765444543 3333479999998643332 26788999976654
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=55.49 E-value=1.5 Score=31.77 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=34.0
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccc
Q 028881 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y 111 (202)
..+...|.||...+. +.+.+.-|. +=-..+|..|+.-=..-+|.+.|..|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 456678999987752 222233333 333578999986433345788898886554
No 79
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=54.21 E-value=2 Score=30.03 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=33.8
Q ss_pred CCCCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccc
Q 028881 55 SPSKLVECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~--~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~ 110 (202)
...+...|.||...+ +++.|+ -|. +=-..+|..|+.-=..-+|.+.|+.|...
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 345567899998775 333443 333 33358899998633334678888888653
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=47.89 E-value=6.4 Score=29.67 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=35.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccCc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~y 115 (202)
-....|+.|+.+.. .|+. |+ =+|.=..||..-+..+ ..|+||+++.....
T Consensus 26 ~G~~nCKsCWf~~k--~LV~-C~----dHYLCl~CLtlmL~~S--drCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVE-CN----NHYLCLNCLTLLLSVS--NRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEE-CS----SCEEEHHHHHHTCSSS--SEETTTTEECCCCS
T ss_pred cCcccChhhccccC--Ceee-ec----chhhHHHHHHHHHhhc--cCCcccCCcCCcce
Confidence 34567888887764 4542 32 3788899988777554 48999999987554
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.43 E-value=3.4 Score=26.30 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=28.6
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 028881 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (202)
Q Consensus 61 ~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~ 109 (202)
.|.||...++++.|+. |.+=-+..|..||.-=+.+ ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888887765444442 3344478999998532222 46788888853
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=40.79 E-value=8.6 Score=26.23 Aligned_cols=34 Identities=38% Similarity=0.796 Sum_probs=21.0
Q ss_pred CCCCCeeeEeccCCCCCCccccc--ccCCCCccccHHHH
Q 028881 56 PSKLVECRICHEEDEDSNMEIPC--SCCGSLKYAHRKCV 92 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC--~C~GslkyvH~~CL 92 (202)
+.....|-+|..+..++..-.-| .|+ ++.|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCcc---ccCchhcc
Confidence 34456899998876444444445 354 79999997
No 83
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=39.01 E-value=23 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.578 Sum_probs=20.4
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceee
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
...|.+|++.|.+..--|..-..-|. ++.++|.-+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP 40 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACP 40 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCS
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCC
Confidence 45799999999865433322222232 355666554
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=38.97 E-value=7.1 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.474 Sum_probs=32.2
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH--hcCCccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~--~kg~~~CEICk~~ 110 (202)
......|.+|...+ .|+. |.+=-+..|..||.-=+. .++.+.|..|..+
T Consensus 8 ~~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34567899997643 3332 334457899999876443 2578899999653
No 85
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=37.03 E-value=12 Score=21.55 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.6
Q ss_pred CCcccccccCCCCcccc
Q 028881 72 SNMEIPCSCCGSLKYAH 88 (202)
Q Consensus 72 ~~Li~PC~C~GslkyvH 88 (202)
+.--.||+|+|...|..
T Consensus 8 naachpc~c~~rp~yc~ 24 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYCG 24 (26)
T ss_dssp CSSCCTTTSTTCCGGGC
T ss_pred CccccccccCCCCCccC
Confidence 34568999999877643
No 86
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=34.90 E-value=16 Score=24.42 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=20.8
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceeec
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (202)
...|.+|++.|.+..--|..-..-|. ++.++|.-+.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~ 41 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPL 41 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTT
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcC
Confidence 35799999999875433322222222 4566776553
No 87
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.55 E-value=1.6 Score=29.29 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=29.4
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~--PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~ 109 (202)
.+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++...|+.|..
T Consensus 6 d~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 34566788 8977654 44542 22242 2689999987 433 36788888753
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.46 E-value=36 Score=23.45 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=34.5
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHh---cCCcccccccccccc
Q 028881 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNP 113 (202)
Q Consensus 57 ~~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~---kg~~~CEICk~~y~~ 113 (202)
.+...| ||....+ +..|+.==.| -.+.|..|+.-=-.. -....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLC---QDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTT---CCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCC---CCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 456677 8887754 4456542234 379999998643322 257899999876643
No 89
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=31.75 E-value=6.7 Score=30.72 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHh---cCCcccccccccc
Q 028881 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQY 111 (202)
Q Consensus 57 ~~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~---kg~~~CEICk~~y 111 (202)
.+...| ||....+ ++.|+.=-.| -.+.|..|+.---.. .+...|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 456789 9987653 4456542234 489999998532222 4688999998654
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=31.60 E-value=23 Score=27.92 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=32.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH---------hcCCccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN---------EKGDTTCEICR 108 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~---------~kg~~~CEICk 108 (202)
.....|++|.++++ |+ - |.+=.+-.|..||..=+. ..+.+.|..|.
T Consensus 61 g~~d~C~vC~~GG~---Ll-c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN---LI-C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCBCSCSSSCCCSS---EE-E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCeecccCCCCc---EE-e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 45679999987763 22 1 223357899999997652 46899999995
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.47 E-value=2.7 Score=30.52 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=31.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH--hcCCccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~--~kg~~~CEICk~~ 110 (202)
.+...|.||...++++.|+ -| .+=-+..|..||.-=+. -++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~C--D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-FC--DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-EC--TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-Ec--CCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4566799998776433333 23 23346899999852222 2467889988654
No 92
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.11 E-value=14 Score=25.71 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=24.0
Q ss_pred CcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 73 NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 73 ~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
.|.-| .|+|.+.|.- .++...|+-|+..|++.
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 45667 7888887642 35778999999999754
No 93
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.76 E-value=19 Score=17.74 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998863
No 94
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=28.71 E-value=2.5 Score=28.72 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=28.9
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~--PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~ 109 (202)
.+.+...| ||...+. +.|+. -|.|+ ..+.|..|+. +.. ++...|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 44566788 8877643 34542 23353 3799999987 322 36777877754
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=28.25 E-value=22 Score=27.62 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHH------H---hcCCccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWC------N---EKGDTTCEICR 108 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~------~---~kg~~~CEICk 108 (202)
......|+||.++++ |+ .|.+--+-.|.+||.+=+ + .++.+.|-.|.
T Consensus 54 Dg~~~~C~vC~dGG~---Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCSE---EE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCCe---eE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 445668999987642 32 234446889999999752 2 46889999993
No 96
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.00 E-value=57 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=22.5
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceeec
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (202)
...|.+|++.|.+..--|..-..-|. ++.++|.-+.
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~ 45 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPA 45 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTT
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCC
Confidence 56899999999865433332222233 4667787664
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.98 E-value=3.7 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=26.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH--hcCCccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICR 108 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~--~kg~~~CEICk 108 (202)
..+...|.+|...+ .|+ - |.+=-+..|..||.-=+. -++.+.|..|.
T Consensus 6 ~~~~~~C~vC~~~g---~ll-~--Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLL-M--CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSS---CCE-E--CSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCC---eEE-E--cCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34566799997653 232 2 233346788888653222 13556666664
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=27.91 E-value=5.2 Score=32.54 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=33.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~~y~ 112 (202)
+...|.+|..+++ |+ - |.|--+..|..|+.--+.. +|.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE---EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc---eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3456999976542 32 2 4455588999998655543 57899999987654
No 99
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.23 E-value=21 Score=17.81 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998863
No 100
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=26.55 E-value=30 Score=24.96 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=21.5
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceeec
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (202)
...|.+|++.|.+..-.|..-..-|. ++.++|.-+.
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPv 65 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPD 65 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTT
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCC
Confidence 46899999999865433332222233 4566776653
No 101
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.53 E-value=31 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=19.8
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCceee
Q 028881 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 102 ~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
..|.+|++.|.+..--|..-..-|. ++.++|.-+
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP 40 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCP 40 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCT
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCC
Confidence 5799999999865433322222232 355667654
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=26.15 E-value=25 Score=25.87 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHH
Q 028881 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQR 94 (202)
Q Consensus 58 ~~~~CRIC~e~~~~------~~Li~PC~C~GslkyvH~~CL~r 94 (202)
....|.+|+..++. ++|+ .|.+=-+..|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 35679999876421 2444 2333346889999963
No 103
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.71 E-value=5.4 Score=29.23 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCCCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHhcCCccccc-cccc
Q 028881 55 SPSKLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEI-CREQ 110 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li--~PC~C~GslkyvH~~CL~rW~~~kg~~~CEI-Ck~~ 110 (202)
.+.+...| ||...+. +.|+ --|.|. ..+.|..||.-=-..++.+.|+. |...
T Consensus 22 ~~~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVgl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVGLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp --CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSSCSSCTTSCCCSSHHHHHH
T ss_pred CCCCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCCCCcCCCCCccCChhhcch
Confidence 34557788 9987654 3454 233454 36899999862111246889999 8743
No 104
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.62 E-value=20 Score=17.76 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=9.1
Q ss_pred ccccccccccc
Q 028881 102 TTCEICREQYN 112 (202)
Q Consensus 102 ~~CEICk~~y~ 112 (202)
..|++|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 47999998886
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.48 E-value=2.7 Score=30.24 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=36.0
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHH------hcCCcccccccccccc
Q 028881 58 KLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN------EKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~--~~~Li~PC~C~GslkyvH~~CL~rW~~------~kg~~~CEICk~~y~~ 113 (202)
....|.+|...+. ++.|+. |.+=-+..|..|+.-=+. -++.+.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4568999988754 244443 333346789999875543 3578999999877653
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.45 E-value=20 Score=24.47 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=33.3
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH-------hcCCcccccccccccc
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-------EKGDTTCEICREQYNP 113 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~-------~kg~~~CEICk~~y~~ 113 (202)
...| ||....++..|+.==.| -.+.|..|+.-=.. ......|+.|.....+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C---~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRC---EEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSS---CCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCC---CCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 5778 88777654456542234 37999999843221 2467899999876543
No 107
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.29 E-value=15 Score=18.25 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 469999998864
No 108
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.68 E-value=55 Score=22.52 Aligned_cols=52 Identities=31% Similarity=0.586 Sum_probs=32.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccccc---cCCCCccccHHHHHHHHHh-------cCCcccccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCS---CCGSLKYAHRKCVQRWCNE-------KGDTTCEICREQY 111 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~---C~GslkyvH~~CL~rW~~~-------kg~~~CEICk~~y 111 (202)
.+.....| ||...++++.|+ -|. |. .+.|..|+.-=-.. .....|+.|+..-
T Consensus 12 ~~~~~~~C-iC~~~~~~g~MI-~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 12 QPEIKVRC-VCGNSLETDSMI-QCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SCCCCCCC-SSCCCCCCSCEE-ECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCCCEEe-ECCCcCCCCCEE-EECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44577889 898875555554 333 54 49999997432111 1367888886543
No 109
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.62 E-value=20 Score=17.90 Aligned_cols=13 Identities=15% Similarity=0.631 Sum_probs=10.0
Q ss_pred Ccccccccccccc
Q 028881 101 DTTCEICREQYNP 113 (202)
Q Consensus 101 ~~~CEICk~~y~~ 113 (202)
...|++|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3579999998863
No 110
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.71 E-value=28 Score=22.84 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=11.3
Q ss_pred ccccccccccccCc
Q 028881 102 TTCEICREQYNPGY 115 (202)
Q Consensus 102 ~~CEICk~~y~~~y 115 (202)
..|.+|++.|.+..
T Consensus 3 ~~C~~CGyvYd~~~ 16 (52)
T 1yk4_A 3 LSCKICGYIYDEDE 16 (52)
T ss_dssp EEESSSSCEEETTT
T ss_pred EEeCCCCeEECCCc
Confidence 57999999997653
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.45 E-value=15 Score=27.57 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCcccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEIC 107 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEIC 107 (202)
..+...|.+|.+.+ . ..-|..++--+..|..||. +.. +|.+.|+-|
T Consensus 12 ~~~~~~C~~C~~~G---~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 12 QMHEDYCFQCGDGG---E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp CSSCSSCTTTCCCS---E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCCCCCCCcCCCCC---c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 34567799997432 2 4456522334799999997 443 456666544
No 112
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.43 E-value=40 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=20.9
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceee
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
...|.+|++.|.+..--|..-..-|. ++.++|.-+
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CP 72 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCP 72 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCS
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCC
Confidence 46899999999865433332222232 456677655
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.40 E-value=28 Score=25.18 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH-hcCCccccccc
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICR 108 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~-~kg~~~CEICk 108 (202)
...+...| ||....+++.|+. |.+=-.+.|..|+.-=.. ......|+.|+
T Consensus 24 ~~~d~vrC-iC~~~~~~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 24 YGTDVTRC-ICGFTHDDGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCCCBCCC-TTSCCSCSSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCCCEEe-ECCCccCCCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 33456678 8877666566664 233357999999753111 12468999996
No 114
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.25 E-value=18 Score=24.41 Aligned_cols=33 Identities=33% Similarity=0.796 Sum_probs=21.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccc---cCCCCccccHHHH
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCS---CCGSLKYAHRKCV 92 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~---C~GslkyvH~~CL 92 (202)
.+.+...| ||....+++.|+ -|. |+ .+.|..|+
T Consensus 6 ~~e~~v~C-~C~~~~~~g~mI-~CD~~~C~---~W~H~~Cv 41 (68)
T 2rsd_A 6 QPEAKVRC-ICSSTMVNDSMI-QCEDQRCQ---VWQHLNCV 41 (68)
T ss_dssp CSSCEECC-TTCCCSCCSCEE-ECSCTTTC---EEEETTTS
T ss_pred CCCCCEEe-ECCCCcCCCCEE-EECCCCCC---CeEchhhC
Confidence 34556678 887665555554 353 64 69999996
No 115
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.94 E-value=30 Score=16.98 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 479999998863
No 116
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.92 E-value=30 Score=17.12 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 479999998863
No 117
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=21.90 E-value=89 Score=19.40 Aligned_cols=22 Identities=14% Similarity=0.399 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhh
Q 028881 172 ICCRIVAITVHLSLTLFGVRSL 193 (202)
Q Consensus 172 ~~crs~ai~~~~llllr~~i~v 193 (202)
.++-++-+..|+|.++.|.+++
T Consensus 9 ~lan~lG~~~~~LIVlYH~v~~ 30 (37)
T 2lat_A 9 IFANMLGVSLFLLVVLYHYVAV 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778889999999999876
No 118
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.83 E-value=24 Score=17.56 Aligned_cols=12 Identities=17% Similarity=0.869 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 479999998863
No 119
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=21.72 E-value=10 Score=35.32 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHhc---CCccccccccccccC
Q 028881 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK---GDTTCEICREQYNPG 114 (202)
Q Consensus 57 ~~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~rW~~~k---g~~~CEICk~~y~~~ 114 (202)
.+...| ||....+ ++.|+.=-.|. .+.|..|+.-=-... +...|+.|.....+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 445667 8877643 45666533454 799999985322221 468999998765443
No 120
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.22 E-value=23 Score=17.88 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 479999998863
No 121
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.79 E-value=26 Score=17.43 Aligned_cols=12 Identities=17% Similarity=0.612 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 469999998863
No 122
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.67 E-value=33 Score=17.20 Aligned_cols=12 Identities=17% Similarity=0.803 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 479999998863
No 123
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.34 E-value=33 Score=18.41 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=10.5
Q ss_pred Ccccccccccccc
Q 028881 101 DTTCEICREQYNP 113 (202)
Q Consensus 101 ~~~CEICk~~y~~ 113 (202)
...|++|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4689999998863
No 124
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=33 Score=18.17 Aligned_cols=13 Identities=15% Similarity=0.887 Sum_probs=10.5
Q ss_pred Ccccccccccccc
Q 028881 101 DTTCEICREQYNP 113 (202)
Q Consensus 101 ~~~CEICk~~y~~ 113 (202)
...|++|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4689999998863
No 125
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.04 E-value=23 Score=17.87 Aligned_cols=12 Identities=17% Similarity=0.791 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 028881 102 TTCEICREQYNP 113 (202)
Q Consensus 102 ~~CEICk~~y~~ 113 (202)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 469999998863
Done!