Query 028881
Match_columns 202
No_of_seqs 231 out of 802
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 05:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vyxa_ g.44.1.3 (A:) IE1B pro 99.5 1.6E-15 1.1E-19 102.7 3.7 55 58-113 5-59 (60)
2 d1chca_ g.44.1.1 (A:) Immediat 98.1 1.3E-06 9.7E-11 59.2 3.7 48 58-112 4-51 (68)
3 d1ur6b_ g.44.1.1 (B:) Not-4 N- 98.0 5.3E-07 3.8E-11 58.6 1.4 50 60-113 1-51 (52)
4 d1iyma_ g.44.1.1 (A:) EL5 RING 97.9 1.3E-06 9.7E-11 57.5 1.6 48 59-112 5-54 (55)
5 d1v87a_ g.44.1.1 (A:) Deltex p 97.9 2.7E-06 2E-10 62.2 3.4 51 59-114 25-95 (114)
6 d1fbva4 g.44.1.1 (A:356-434) C 97.7 1.3E-05 9.7E-10 55.8 3.8 48 59-113 23-70 (79)
7 d1g25a_ g.44.1.1 (A:) TFIIH Ma 97.7 9E-06 6.6E-10 54.6 2.8 48 59-112 3-54 (65)
8 d3dplr1 g.44.1.1 (R:19-106) RI 97.6 1.5E-05 1.1E-09 56.3 2.6 32 75-113 54-85 (88)
9 d1rmda2 g.44.1.1 (A:1-86) V(D) 97.3 2.6E-05 1.9E-09 55.7 0.7 50 58-114 22-71 (86)
10 d1jm7a_ g.44.1.1 (A:) brca1 RI 97.2 0.0001 7.3E-09 53.0 3.2 50 59-114 21-71 (103)
11 d1bora_ g.44.1.1 (A:) Acute pr 96.8 0.00013 9.3E-09 47.9 0.6 46 58-114 5-50 (56)
12 d2baya1 g.44.1.2 (A:1-56) Pre- 96.8 0.00023 1.7E-08 46.2 1.8 45 61-113 2-47 (56)
13 d1jm7b_ g.44.1.1 (B:) bard1 RI 96.1 0.00041 3E-08 49.1 -0.2 45 59-113 22-67 (97)
14 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 94.6 0.0092 6.7E-07 40.2 2.8 50 58-114 7-56 (78)
15 d2c2la2 g.44.1.2 (A:225-304) S 93.8 0.013 9.5E-07 39.6 2.2 47 59-112 7-53 (80)
16 d1wima_ g.44.1.1 (A:) UbcM4-in 93.5 0.016 1.2E-06 39.8 2.3 50 57-111 3-60 (94)
17 d1wgma_ g.44.1.2 (A:) Ubiquiti 90.5 0.071 5.2E-06 37.5 2.7 49 58-113 21-69 (98)
18 d1f62a_ g.50.1.2 (A:) Williams 78.0 0.17 1.2E-05 31.2 -0.5 46 61-109 2-49 (51)
19 d1wema_ g.50.1.2 (A:) Death as 75.6 0.89 6.5E-05 29.6 2.8 50 58-111 15-71 (76)
20 d1wesa_ g.50.1.2 (A:) PHD Inhi 67.5 0.48 3.5E-05 31.5 -0.2 49 57-110 14-65 (71)
21 d1we9a_ g.50.1.2 (A:) PHD fing 65.5 0.56 4.1E-05 29.9 -0.2 51 57-110 4-58 (64)
22 d1weoa_ g.44.1.1 (A:) Cellulos 58.9 7.8 0.00057 27.0 5.0 55 56-113 13-70 (93)
23 d1akya2 g.41.2.1 (A:131-168) M 56.6 1.6 0.00011 26.0 0.8 19 101-119 2-20 (38)
24 d1s3ga2 g.41.2.1 (A:126-160) M 55.1 1.6 0.00012 25.4 0.7 19 101-119 2-20 (35)
25 d1wewa_ g.50.1.2 (A:) Sumoylat 53.9 4.6 0.00033 26.4 2.9 54 56-111 13-73 (78)
26 d1e4va2 g.41.2.1 (A:122-156) M 53.0 1.8 0.00013 25.2 0.6 19 101-119 2-20 (35)
27 d1zina2 g.41.2.1 (A:126-160) M 50.8 2.2 0.00016 24.8 0.7 19 101-119 2-20 (35)
28 d1wepa_ g.50.1.2 (A:) PHD fing 50.5 14 0.00099 24.0 5.0 52 58-113 11-66 (79)
29 d2pnxa1 g.50.1.2 (A:195-245) I 49.8 0.38 2.7E-05 30.0 -3.1 46 59-109 2-50 (51)
30 d1fp0a1 g.50.1.2 (A:19-88) Nuc 49.1 1.7 0.00012 28.2 -0.0 48 59-112 7-56 (70)
31 d2epqa1 g.37.1.1 (A:380-411) P 44.9 2.7 0.00019 23.9 0.4 13 101-113 3-15 (32)
32 d1dx8a_ g.41.5.1 (A:) Rubredox 44.6 6.1 0.00044 26.2 2.3 38 99-136 5-45 (70)
33 d1weva_ g.50.1.2 (A:) PHD fing 42.3 1.1 7.8E-05 30.1 -2.0 53 58-113 15-75 (88)
34 d1wila_ g.50.1.3 (A:) Hypothet 38.0 8.8 0.00064 26.6 2.4 37 55-95 11-47 (89)
35 d1iroa_ g.41.5.1 (A:) Rubredox 37.8 6.5 0.00048 24.7 1.5 35 101-135 3-40 (53)
36 d2epra1 g.37.1.1 (A:350-384) P 37.6 3.1 0.00022 24.2 -0.1 17 99-115 3-19 (35)
37 d2dsxa1 g.41.5.1 (A:1-52) Rubr 36.9 6.6 0.00048 24.6 1.4 35 101-135 3-40 (52)
38 d2ak3a2 g.41.2.1 (A:125-161) M 35.4 5.6 0.00041 23.3 0.8 18 102-119 3-20 (37)
39 d1s24a_ g.41.5.1 (A:) Two-iron 34.5 8 0.00058 24.6 1.6 36 101-136 4-42 (56)
40 d1brfa_ g.41.5.1 (A:) Rubredox 31.8 7.5 0.00054 24.4 1.0 34 102-135 3-39 (53)
41 d2dlqa4 g.37.1.1 (A:8-34) GLI- 25.2 8.5 0.00062 20.9 0.3 13 103-115 2-14 (27)
42 d1joca1 g.50.1.1 (A:1348-1411) 20.5 6.5 0.00047 24.9 -1.0 20 94-113 1-20 (64)
No 1
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=99.53 E-value=1.6e-15 Score=102.73 Aligned_cols=55 Identities=35% Similarity=0.790 Sum_probs=49.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+...|+||+++.+ ++++.||.|+|+.+++|+.||++|++.+++.+|++|+++|+.
T Consensus 5 d~~~C~IC~~~~~-~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCccCCccCC-CceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence 4568999998764 578899999999999999999999999999999999999975
No 2
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=98.05 E-value=1.3e-06 Score=59.21 Aligned_cols=48 Identities=27% Similarity=0.734 Sum_probs=38.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
...+|-||++.-.+.....||. +..|.+|+++|++.+ .+|++|++++.
T Consensus 4 ~~d~C~IC~~~~~~~~~~~~C~-----H~Fc~~Ci~~w~~~~--~~CP~CR~~i~ 51 (68)
T d1chca_ 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCC
T ss_pred CCCCCccCCcCccCCcEEeCCC-----CcCcHHHHHHHHHhC--CcCCCCCcchH
Confidence 3457999999876555678986 689999999999875 47999998765
No 3
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.04 E-value=5.3e-07 Score=58.62 Aligned_cols=50 Identities=32% Similarity=0.644 Sum_probs=37.0
Q ss_pred CeeeEeccCCCC-CCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 60 VECRICHEEDED-SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 60 ~~CRIC~e~~~~-~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.+|-||+++-+. .....++.|. +.+|+.|+.+|++.+ +.+|++|+++|..
T Consensus 1 leCpICl~~~~~~~~~~~~~~Cg---H~~c~~C~~~w~~~~-~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTDE-NGLCPACRKPYPE 51 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSS---CCCCHHHHHHHTTTS-CCBCTTTCCBCSC
T ss_pred CCCcCCChhhhCCCceEEecCCC---CccchHHHHHHHhhc-CCCCCccCCcCCC
Confidence 379999987532 2334455564 899999999999754 3479999999863
No 4
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=97.92 E-value=1.3e-06 Score=57.46 Aligned_cols=48 Identities=35% Similarity=0.716 Sum_probs=34.6
Q ss_pred CCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 59 LVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~~~~--~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
..+|-||+++-.++ ....|+ |. +..|..|+.+|++.+ .+|++|+++..
T Consensus 5 ~~~C~ICl~~~~~~~~~~~l~~-C~---H~Fh~~Ci~~Wl~~~--~~CP~CR~~i~ 54 (55)
T d1iyma_ 5 GVECAVCLAELEDGEEARFLPR-CG---HGFHAECVDMWLGSH--STCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSS-SC---CEECTTHHHHTTTTC--CSCSSSCCCSC
T ss_pred CCCCeEECccccCCCEEEEeCC-CC---CcccHHHHHHHHHhC--CcCCCCCCEeE
Confidence 34699999986433 333342 32 789999999999764 47999998753
No 5
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.91 E-value=2.7e-06 Score=62.23 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=37.3
Q ss_pred CCeeeEeccCCCC---------------C--CcccccccCCCCccccHHHHHHHHHhc---CCccccccccccccC
Q 028881 59 LVECRICHEEDED---------------S--NMEIPCSCCGSLKYAHRKCVQRWCNEK---GDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~---------------~--~Li~PC~C~GslkyvH~~CL~rW~~~k---g~~~CEICk~~y~~~ 114 (202)
...|-||+++-.+ . ..+.||. +.+|..||..|++.+ +..+|++|+..|..+
T Consensus 25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~Cg-----H~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T d1v87a_ 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred cccccchhheecccccccccccccccccccceEECCCC-----ChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence 3479999876311 1 1345665 899999999999875 356899999998544
No 6
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.69 E-value=1.3e-05 Score=55.81 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=38.4
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
...|.||++... ++.+.||+ +..|+.|+.+|+..+ ...|++|++.+..
T Consensus 23 ~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~wl~~~-~~~CP~Cr~~i~~ 70 (79)
T d1fbva4 23 FQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQESE-GQGCPFCRCEIKG 70 (79)
T ss_dssp TTBCTTTSSSBC-CEECSSSC-----CEECHHHHHHHHHTT-CCSCTTTCCCCCC
T ss_pred CCCCccCCCcCC-CeEEeCCC-----CeeeHHHHHHHHHHC-cCcCCCCCcCccC
Confidence 357999998764 47788975 688999999999754 3479999999874
No 7
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.69 E-value=9e-06 Score=54.65 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCeeeEeccCC---CC-CCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 59 LVECRICHEED---ED-SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~---~~-~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
...|-||++.. .+ ..++.||+ +.+|..||++|++.+ ...|++|++.++
T Consensus 3 d~~CpIC~~~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-~~~CP~CR~~i~ 54 (65)
T d1g25a_ 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVRG-AGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHTT-SSSCTTTCCCCS
T ss_pred CCCCCcCCceeecCCceEEEeCccC-----hHhhHHHHHHHhCcC-cCCCCCCCcCcc
Confidence 46899998752 22 23567776 799999999999754 347999998875
No 8
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.56 E-value=1.5e-05 Score=56.31 Aligned_cols=32 Identities=19% Similarity=0.523 Sum_probs=26.5
Q ss_pred ccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 75 EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 75 i~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
..||+ +..|..||.+|+..++ +|++|+++|..
T Consensus 54 ~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 85 (88)
T d3dplr1 54 WGVCN-----HAFHFHCISRWLKTRQ--VCPLDNREWEF 85 (88)
T ss_dssp EETTS-----CEEEHHHHHHHHTTCS--BCSSSCSBCCE
T ss_pred Ecccc-----CcccHHHHHHHHHHCC--cCCCCCCcccc
Confidence 45665 7899999999997754 79999999974
No 9
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.27 E-value=2.6e-05 Score=55.72 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=40.7
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+...|-||++.-. .+.+.||+ +...+.||++|++.++ .+|++|+.++.+.
T Consensus 22 ~~l~C~IC~~~~~-~pv~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~p~~~~ 71 (86)
T d1rmda2 22 KSISCQICEHILA-DPVETSCK-----HLFCRICILRCLKVMG-SYCPSCRYPCFPT 71 (86)
T ss_dssp HHTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCGG
T ss_pred cCcCCccCCcchh-cceecCCC-----ChhhHHHHHHHHhhCC-CcCcccCCCCChh
Confidence 4568999998764 47888987 7899999999997644 5799999998754
No 10
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.19 E-value=0.0001 Score=52.99 Aligned_cols=50 Identities=24% Similarity=0.629 Sum_probs=39.7
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhc-CCccccccccccccC
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~k-g~~~CEICk~~y~~~ 114 (202)
.-.|-||++.-. ++...||+ +..++.||.+|++.+ +...|++|+.++...
T Consensus 21 ~l~CpIC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (103)
T d1jm7a_ 21 ILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (103)
T ss_dssp HTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CcCCCccCchhC-CeEEcCCC-----CchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence 346999987764 47778865 789999999999875 456899999988643
No 11
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.79 E-value=0.00013 Score=47.94 Aligned_cols=46 Identities=22% Similarity=0.649 Sum_probs=36.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+..+|-||++... ++...||+ +..|+.|+++| ...|++|++++.+.
T Consensus 5 ~~l~C~IC~~~~~-~p~~lpCg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~~ 50 (56)
T d1bora_ 5 QFLRCQQCQAEAK-CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCB-CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSCC
T ss_pred CCCCCcccCcccC-CCEEecCC-----CHHhHHHHHcC-----CCcCcCCCCcccCC
Confidence 4468999998764 46777876 68999999765 56899999998754
No 12
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.76 E-value=0.00023 Score=46.15 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=35.0
Q ss_pred eeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 61 ECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 61 ~CRIC~e~~~~~~Li~P-C~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
.|-||++.-. ++.+.| |+ +..++.|+.+|+++++ +|++|+++...
T Consensus 2 ~C~Ic~~~~~-~Pv~~~~cG-----h~fc~~cI~~~l~~~~--~CP~c~~~l~~ 47 (56)
T d2baya1 2 LCAISGKVPR-RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 47 (56)
T ss_dssp CCTTTCSCCS-SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred CCccCCchHH-hcCccCCCC-----CcccHHHHHHHHhhcc--CCCccCCcCCH
Confidence 5888877654 355554 44 6899999999999876 79999998764
No 13
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.09 E-value=0.00041 Score=49.11 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCeeeEeccCCCCCCc-ccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 59 LVECRICHEEDEDSNM-EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~L-i~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
...|-||++.-.+ +. ..||+ +.+++.|+.+|+.. .|++|+..+..
T Consensus 22 ~l~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~~----~CP~Cr~~~~~ 67 (97)
T d1jm7b_ 22 LLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIGT----GCPVCYTPAWI 67 (97)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTTT----BCSSSCCBCSC
T ss_pred cCCCccCCchhhc-CceeCCCC-----CchhHHHHHHHHhc----cccccCCcCch
Confidence 4589999988754 44 45765 78999999999853 49999988764
No 14
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=94.64 E-value=0.0092 Score=40.16 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=38.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~~ 114 (202)
+.-.|-||++--. ++...||+ +-.-+.||++|++.+ ...|.+|+.++...
T Consensus 7 ~~l~CpIc~~~m~-dPV~~~cg-----h~fc~~ci~~~~~~~-~~~cP~~~~~l~~~ 56 (78)
T d1t1ha_ 7 EYFRCPISLELMK-DPVIVSTG-----QTYERSSIQKWLDAG-HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCS-SEEEETTT-----EEEEHHHHHHHHTTT-CCBCTTTCCBCSSC
T ss_pred ccCCCcCcCchhh-CceEccCC-----CcchHHHHHHHHHHC-CCCCCcccccCCcc
Confidence 4678999987765 37777875 578999999999754 45799999887643
No 15
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.81 E-value=0.013 Score=39.61 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=37.3
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~ 112 (202)
.-.|-||++--.+ +...||+ +..-+.||++|++.. ...|++|+.+..
T Consensus 7 ~l~CpIc~~l~~d-Pv~~~cG-----htfc~~ci~~~l~~~-~~~cP~c~~~l~ 53 (80)
T d2c2la2 7 YLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRV-GHFNPVTRSPLT 53 (80)
T ss_dssp TTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHT-CSSCTTTCCCCC
T ss_pred cccCcCcCchhhh-hcccCCc-----CeecHHHHHHHHhcC-CccCCCcccccc
Confidence 5579999877653 7788877 478899999999764 457999998765
No 16
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.52 E-value=0.016 Score=39.85 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=35.4
Q ss_pred CCCCeeeEeccCCCCCCc--ccccccCCCCccccHHHHHHHHHhc---C---Ccccccccccc
Q 028881 57 SKLVECRICHEEDEDSNM--EIPCSCCGSLKYAHRKCVQRWCNEK---G---DTTCEICREQY 111 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~L--i~PC~C~GslkyvH~~CL~rW~~~k---g---~~~CEICk~~y 111 (202)
+....|-||+++...+.+ ..+|. +..+..|++.|++.+ + ..+|+.|+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~ 60 (94)
T d1wima_ 3 SGSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CCCCcCccCCCcccCCceEEECCCC-----CEeCCcCHHHHHHHHHhcCCccccCCcCCCCCC
Confidence 345689999988643332 34565 689999999999754 2 45799876544
No 17
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.53 E-value=0.071 Score=37.52 Aligned_cols=49 Identities=14% Similarity=0.002 Sum_probs=36.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
+.-.|-||++--. .+.+.||. | ...=+.||++|++.++ +|++|++++..
T Consensus 21 ~~f~CPI~~~lm~-dPV~~~~~--~--~ty~r~~I~~~l~~~~--~~P~~~~~l~~ 69 (98)
T d1wgma_ 21 DEFLDPIMSTLMC-DPVVLPSS--R--VTVDRSTIARHLLSDQ--TDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS-SEEECTTT--C--CEEEHHHHHHHTTTSC--BCTTTCSBCCT
T ss_pred HHhCCcCchhHHH-HHHhcccc--c--chhhHHHHHHHHHhcC--Ccccccccccc
Confidence 3689999988765 37888854 1 2466999999997644 79999988753
No 18
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.01 E-value=0.17 Score=31.17 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=31.7
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 028881 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (202)
Q Consensus 61 ~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~ 109 (202)
.|.||...++++.|+. | .+=-.+.|..|+.--+.. ++.+.|..|+.
T Consensus 2 ~C~vC~~~~~~~~~i~-C--d~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~ 49 (51)
T d1f62a_ 2 RCKVCRKKGEDDKLIL-C--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE-C--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCcCcCCCCCCCCEEE-c--CCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence 5788887776556653 3 444578899998765543 46788888864
No 19
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=75.55 E-value=0.89 Score=29.57 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=32.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHH----HH---HHhcCCcccccccccc
Q 028881 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQ----RW---CNEKGDTTCEICREQY 111 (202)
Q Consensus 58 ~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~----rW---~~~kg~~~CEICk~~y 111 (202)
+...| ||....+++.|+.=-.| -++.|..|+. .- -.......|+.|+...
T Consensus 15 ~~~~C-iC~~~~~~~~mi~Cd~C---~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~ 71 (76)
T d1wema_ 15 NALYC-ICRQPHNNRFMICCDRC---EEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSS---CCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CcCEE-ECCCccCCCeEEEECCC---CCcCCccccCCCcccccccCCCCCcEECCCCcCcC
Confidence 34568 88777665567654455 4799999982 11 2234578999996543
No 20
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.52 E-value=0.48 Score=31.52 Aligned_cols=49 Identities=24% Similarity=0.535 Sum_probs=29.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCC-CccccHHHHHHHHHh--cCCccccccccc
Q 028881 57 SKLVECRICHEEDEDSNMEIPCSCCGS-LKYAHRKCVQRWCNE--KGDTTCEICREQ 110 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~~Li~PC~C~Gs-lkyvH~~CL~rW~~~--kg~~~CEICk~~ 110 (202)
.+...| ||...+++. ++ -|.|.+- ..+.|..||. +.. .++..|+.|+..
T Consensus 14 ~e~~~C-iC~~~~~~~-~i-~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~ 65 (71)
T d1wesa_ 14 NEPTYC-LCNQVSYGE-MI-GCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 65 (71)
T ss_dssp SSCCCS-TTCCCCCSS-EE-CCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-EeCCCCCCC-EE-EEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence 334567 898765433 22 2332221 3589999985 222 368999999653
No 21
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=65.47 E-value=0.56 Score=29.89 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=32.3
Q ss_pred CCCCeeeEeccCCCCC-CcccccccCCCCccccHHHHHH---HHHhcCCccccccccc
Q 028881 57 SKLVECRICHEEDEDS-NMEIPCSCCGSLKYAHRKCVQR---WCNEKGDTTCEICREQ 110 (202)
Q Consensus 57 ~~~~~CRIC~e~~~~~-~Li~PC~C~GslkyvH~~CL~r---W~~~kg~~~CEICk~~ 110 (202)
.....|.+|....+++ .|+ -| .+=-+++|..|+.- .........|+.|...
T Consensus 4 ~~~~~C~~C~~~~~~~~~~I-~C--d~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~ 58 (64)
T d1we9a_ 4 GSSGQCGACGESYAADEFWI-CC--DLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEE-EC--SSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCcCcCcCCCCCCCCCEE-Ec--CCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence 3456899998776544 445 33 33348999999852 2222356788888654
No 22
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=58.92 E-value=7.8 Score=27.01 Aligned_cols=55 Identities=24% Similarity=0.553 Sum_probs=37.9
Q ss_pred CCCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 028881 56 PSKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 56 ~~~~~~CRIC~e~~---~~~~Li~PC~C~GslkyvH~~CL~rW~~~kg~~~CEICk~~y~~ 113 (202)
......|.||-+.- .++.+..-|.=.+ --|-+.|.+-=++ -|+..|..|+.+|+-
T Consensus 13 ~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErk-eG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 13 NLDGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred hcccchhhhcccccccCCCCCEEEEecccC--CccchHHHHHHHh-ccCccCcccCChhhh
Confidence 35678999998773 3455555565332 3488889765443 367899999999974
No 23
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.59 E-value=1.6 Score=25.96 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=15.8
Q ss_pred CccccccccccccCccCCC
Q 028881 101 DTTCEICREQYNPGYTAPP 119 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~ 119 (202)
..+|+-|+..|...|.+|.
T Consensus 2 Rr~C~~cG~~Yh~~~~ppk 20 (38)
T d1akya2 2 RLIHPASGRSYHKIFNPPK 20 (38)
T ss_dssp EEECTTTCCEEETTTBCCS
T ss_pred ccCCcCccchhhhhccCcC
Confidence 4689999999998887764
No 24
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=55.14 E-value=1.6 Score=25.40 Aligned_cols=19 Identities=21% Similarity=0.718 Sum_probs=15.5
Q ss_pred CccccccccccccCccCCC
Q 028881 101 DTTCEICREQYNPGYTAPP 119 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~ 119 (202)
..+|+-|+..|...|.+|.
T Consensus 2 R~~C~~CG~~Yh~~~~pPk 20 (35)
T d1s3ga2 2 RRICKVCGTSYHLLFNPPQ 20 (35)
T ss_dssp EEEETTTCCEEETTTBCCS
T ss_pred ccCCcCcCchhccccCCCC
Confidence 4689999999998877663
No 25
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=53.94 E-value=4.6 Score=26.40 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=30.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHH----HH---HhcCCcccccccccc
Q 028881 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQR----WC---NEKGDTTCEICREQY 111 (202)
Q Consensus 56 ~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~r----W~---~~kg~~~CEICk~~y 111 (202)
+.+...| ||....+++.++ =|.|..=-.++|..|+.- .- .......|+.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~~~~~i-~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T d1wewa_ 13 PEIKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCccEe-ECCCccCCCcEE-EEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence 3445788 998776555554 353211136999999731 00 011247888887544
No 26
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=53.02 E-value=1.8 Score=25.20 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.8
Q ss_pred CccccccccccccCccCCC
Q 028881 101 DTTCEICREQYNPGYTAPP 119 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~ 119 (202)
.++|+-|+..|...|.+|.
T Consensus 2 Rr~c~~cG~~Yh~~~~PPk 20 (35)
T d1e4va2 2 RRVHAPSGRVYHVKFNPPK 20 (35)
T ss_dssp EEEETTTTEEEETTTBCCS
T ss_pred ccCCcCcCChhhhccCccc
Confidence 4689999999998887764
No 27
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=50.83 E-value=2.2 Score=24.83 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=15.5
Q ss_pred CccccccccccccCccCCC
Q 028881 101 DTTCEICREQYNPGYTAPP 119 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~ 119 (202)
..+|+-|+..|...|.+|.
T Consensus 2 Rr~C~~CG~~Yh~~~~pPk 20 (35)
T d1zina2 2 RRICRNCGATYHLIFHPPA 20 (35)
T ss_dssp EEEETTTCCEEETTTBCCS
T ss_pred ccCCcCcCchhccccCCCC
Confidence 4689999999998877664
No 28
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.51 E-value=14 Score=24.00 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=32.1
Q ss_pred CCCeeeEeccCCC-CCCcccccccCCCCccccHHHHH--HHH-HhcCCcccccccccccc
Q 028881 58 KLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQ--RWC-NEKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~-~~~Li~PC~C~GslkyvH~~CL~--rW~-~~kg~~~CEICk~~y~~ 113 (202)
....| ||....+ +..|+ .|.+=-.+.|..|+. ..- ...+...|+.|+....+
T Consensus 11 ~pv~C-iC~~~~~~~~~mI---~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp 66 (79)
T d1wepa_ 11 VPVYC-LCRQPYNVNHFMI---ECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEE---EBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCeEe-ECCCccCCCCcEE---ECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCC
Confidence 34556 9987654 33455 233334799999984 222 22356999999876543
No 29
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}
Probab=49.76 E-value=0.38 Score=29.95 Aligned_cols=46 Identities=26% Similarity=0.576 Sum_probs=27.7
Q ss_pred CCeeeEeccCCCCCCcccccccC-CCCccccHHHHHHHHHh--cCCcccccccc
Q 028881 59 LVECRICHEEDEDSNMEIPCSCC-GSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~-GslkyvH~~CL~rW~~~--kg~~~CEICk~ 109 (202)
...| ||....++ .|+ -|.+. ....+.|..||. +.. .++..|+.|..
T Consensus 2 ~~yC-~C~~~~~~-~mi-~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~ 50 (51)
T d2pnxa1 2 PTYC-LCHQVSYG-EMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 50 (51)
T ss_dssp CEET-TTTEECCS-EEE-ECSCTTCSSCEEEGGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-EcCCCCCC-CEE-EEecCCCCCCCEeCCccC--CCcCCCCcEECcCCCC
Confidence 3467 78766543 344 56542 235699999985 222 35677777754
No 30
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.08 E-value=1.7 Score=28.22 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=32.2
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 028881 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (202)
Q Consensus 59 ~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW~~~--kg~~~CEICk~~y~ 112 (202)
-..|++|..++ .|+ . |.+=-+..|..|+.-.+.. ++.+.|+.|.....
T Consensus 7 c~~C~~C~~~~---~ll-~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 56 (70)
T d1fp0a1 7 ATICRVCQKPG---DLV-M--CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 56 (70)
T ss_dssp SSCCSSSCSSS---CCE-E--CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCCCCCcC---EEE-E--CCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence 45778886543 333 2 3344579999999876643 46899999965554
No 31
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.88 E-value=2.7 Score=23.95 Aligned_cols=13 Identities=15% Similarity=0.698 Sum_probs=10.6
Q ss_pred Ccccccccccccc
Q 028881 101 DTTCEICREQYNP 113 (202)
Q Consensus 101 ~~~CEICk~~y~~ 113 (202)
...|++|+++|+-
T Consensus 3 p~~cpic~qrfkr 15 (32)
T d2epqa1 3 PYSCPVCGLRFKR 15 (32)
T ss_dssp SSEETTTTEECSC
T ss_pred CcccchHHHHhhc
Confidence 3579999999973
No 32
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=44.58 E-value=6.1 Score=26.24 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=25.0
Q ss_pred cCCccccccccccccCccCCCCcccccc---ccCCCceeec
Q 028881 99 KGDTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (202)
Q Consensus 99 kg~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (202)
.+...|.+|++.|.+..--|..-..-|. ++.++|.-+.
T Consensus 5 ~~ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~ 45 (70)
T d1dx8a_ 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPA 45 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTT
T ss_pred CCeEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcC
Confidence 4577999999999877544433233333 5677887664
No 33
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.31 E-value=1.1 Score=30.11 Aligned_cols=53 Identities=15% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCCeeeEeccCCC-C-CCcccccccCCCCccccHHHHHHHHH------hcCCcccccccccccc
Q 028881 58 KLVECRICHEEDE-D-SNMEIPCSCCGSLKYAHRKCVQRWCN------EKGDTTCEICREQYNP 113 (202)
Q Consensus 58 ~~~~CRIC~e~~~-~-~~Li~PC~C~GslkyvH~~CL~rW~~------~kg~~~CEICk~~y~~ 113 (202)
....|.||..... + +.|+ -|. +=-..+|..|+.-.+. .++.+.|+.|....+.
T Consensus 15 ~~~~C~iC~~~~~~~~~~~v-~Cd--~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~ 75 (88)
T d1weva_ 15 MGLACVVCRQMTVASGNQLV-ECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEE-ECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CcCCccCCCCccCCCCCeEE-EcC--CCCCccccccCCCcccccccccCCCeEECcccCchHhh
Confidence 3457999986542 2 3444 343 2236889999764332 2357899999876553
No 34
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.04 E-value=8.8 Score=26.56 Aligned_cols=37 Identities=22% Similarity=0.550 Sum_probs=24.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHH
Q 028881 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRW 95 (202)
Q Consensus 55 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GslkyvH~~CL~rW 95 (202)
...+...|-||.--+ .+-+-||.=.| +..|..||+|=
T Consensus 11 ~v~~D~mC~vC~v~t--~~~l~pCRvCt--Rv~H~~CL~r~ 47 (89)
T d1wila_ 11 PVVNDEMCDVCEVWT--AESLFPCRVCT--RVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCC--SSCCSSCSSSS--SCCCHHHHHHH
T ss_pred CCCcCccccccCccc--ccceecceeec--chhhHHHHHHh
Confidence 345567899992222 22234988554 78999999875
No 35
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=37.77 E-value=6.5 Score=24.69 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=20.7
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceee
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
...|.+|++.|.+..--|..-..-|. ++.++|.-+
T Consensus 3 ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP~dw~CP 40 (53)
T d1iroa_ 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCP 40 (53)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCT
T ss_pred CeEcCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCc
Confidence 45799999999876433322222232 456677654
No 36
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.60 E-value=3.1 Score=24.17 Aligned_cols=17 Identities=29% Similarity=0.808 Sum_probs=13.3
Q ss_pred cCCccccccccccccCc
Q 028881 99 KGDTTCEICREQYNPGY 115 (202)
Q Consensus 99 kg~~~CEICk~~y~~~y 115 (202)
+....||+|+..|.-.|
T Consensus 3 rk~~~ce~cgk~frdvy 19 (35)
T d2epra1 3 RKQVACEICGKIFRDVY 19 (35)
T ss_dssp CCSEEETTTTEEESSHH
T ss_pred chhhhHHHHHHHHHHHH
Confidence 35678999999998654
No 37
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=36.95 E-value=6.6 Score=24.60 Aligned_cols=35 Identities=20% Similarity=0.578 Sum_probs=20.8
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceee
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
...|.+|++.|.+..--|..-..-|. ++.++|.-+
T Consensus 3 ~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~~w~CP 40 (52)
T d2dsxa1 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACP 40 (52)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCT
T ss_pred eEEeCCCCeEECcccCCcccCCCCCCCHHHCCCCCCCc
Confidence 35799999999876533322222233 456677654
No 38
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=35.36 E-value=5.6 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.1
Q ss_pred ccccccccccccCccCCC
Q 028881 102 TTCEICREQYNPGYTAPP 119 (202)
Q Consensus 102 ~~CEICk~~y~~~yt~p~ 119 (202)
++|+-|+..|...|.+|.
T Consensus 3 ~vc~~cG~~Yh~~~~pPk 20 (37)
T d2ak3a2 3 WIHPGSGRVYNIEFNPPK 20 (37)
T ss_dssp EEETTTTEEEETTTBCCS
T ss_pred eeeCCcCChhhhccCCcc
Confidence 579999999998887664
No 39
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=34.51 E-value=8 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=22.3
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCceeec
Q 028881 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (202)
Q Consensus 101 ~~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (202)
+..|.+|++.|.+..--|..-..-|. ++.++|.-+.
T Consensus 4 ky~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~dw~CP~ 42 (56)
T d1s24a_ 4 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPD 42 (56)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSS
T ss_pred cEECCCCCcEECcccCCcccCcCCCCChhhCCCCCCCcC
Confidence 35799999999876544433333333 4567776653
No 40
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.81 E-value=7.5 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=20.0
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCceee
Q 028881 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (202)
Q Consensus 102 ~~CEICk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (202)
..|.+|++.|.+..--|..-..-|. ++..+|.-+
T Consensus 3 y~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP~dw~CP 39 (53)
T d1brfa_ 3 WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCP 39 (53)
T ss_dssp EEETTTCCEEETTTCBGGGTBCTTCCGGGSCTTCBCT
T ss_pred eECCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCc
Confidence 4799999999865433322222232 456677655
No 41
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.21 E-value=8.5 Score=20.92 Aligned_cols=13 Identities=23% Similarity=0.879 Sum_probs=10.7
Q ss_pred cccccccccccCc
Q 028881 103 TCEICREQYNPGY 115 (202)
Q Consensus 103 ~CEICk~~y~~~y 115 (202)
.|++|+..|...|
T Consensus 2 qcp~c~k~f~sky 14 (27)
T d2dlqa4 2 ECPTCHKKFLSKY 14 (27)
T ss_dssp CCTTTCCCCSSHH
T ss_pred cCcchHHHHHHhH
Confidence 6999999997654
No 42
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.46 E-value=6.5 Score=24.92 Aligned_cols=20 Identities=15% Similarity=0.704 Sum_probs=15.9
Q ss_pred HHHHhcCCcccccccccccc
Q 028881 94 RWCNEKGDTTCEICREQYNP 113 (202)
Q Consensus 94 rW~~~kg~~~CEICk~~y~~ 113 (202)
||+..+....|.+|+.+|..
T Consensus 1 rW~~d~~~~~C~~C~~~F~~ 20 (64)
T d1joca1 1 KWAEDNEVQNCMACGKGFSV 20 (64)
T ss_dssp CCCCGGGCCBCTTTCCBCCS
T ss_pred CCCCcccCCcCcCcCCcccC
Confidence 47777777889999999863
Done!