Query 028882
Match_columns 202
No_of_seqs 117 out of 931
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 1E-63 2.2E-68 374.9 17.3 202 1-202 1-202 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 3.1E-37 6.8E-42 236.5 18.3 198 3-201 2-210 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 2.5E-32 5.3E-37 201.7 16.5 176 1-182 1-194 (198)
4 KOG0860 Synaptobrevin/VAMP-lik 100.0 4.6E-29 1E-33 173.8 8.8 82 120-201 24-105 (116)
5 COG5143 SNC1 Synaptobrevin/VAM 99.9 7.8E-26 1.7E-30 171.3 15.3 181 1-186 1-190 (190)
6 PF00957 Synaptobrevin: Synapt 99.9 2.4E-26 5.3E-31 157.8 8.6 78 124-201 2-79 (89)
7 PF13774 Longin: Regulated-SNA 99.8 5.2E-19 1.1E-23 119.8 9.7 81 28-109 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.6 7.9E-05 1.7E-09 57.2 4.6 72 126-197 95-166 (190)
9 PF04086 SRP-alpha_N: Signal r 95.1 0.13 2.8E-06 42.3 8.0 91 26-119 5-100 (279)
10 PF09426 Nyv1_N: Vacuolar R-SN 94.7 0.046 1E-06 39.5 3.7 61 25-85 42-110 (141)
11 KOG0811 SNARE protein PEP12/VA 92.9 0.44 9.6E-06 39.0 6.8 45 125-169 180-224 (269)
12 PF03908 Sec20: Sec20; InterP 92.4 2.4 5.2E-05 28.8 9.0 63 130-195 6-78 (92)
13 PF00957 Synaptobrevin: Synapt 92.2 2.4 5.2E-05 28.4 9.4 52 125-176 10-61 (89)
14 KOG0810 SNARE protein Syntaxin 90.5 1.9 4.1E-05 36.0 8.1 40 125-164 206-245 (297)
15 PF04099 Sybindin: Sybindin-li 90.4 4.3 9.4E-05 29.9 9.3 47 41-88 65-112 (142)
16 PF03908 Sec20: Sec20; InterP 89.9 3.2 7E-05 28.1 7.7 74 125-198 8-85 (92)
17 KOG0781 Signal recognition par 89.4 3.6 7.9E-05 36.6 9.2 89 1-92 1-95 (587)
18 KOG0938 Adaptor complexes medi 89.1 3.8 8.3E-05 34.7 8.7 124 4-134 5-132 (446)
19 KOG1983 Tomosyn and related SN 89.1 0.44 9.5E-06 46.1 3.8 47 141-187 943-989 (993)
20 PF01217 Clat_adaptor_s: Clath 88.8 7.4 0.00016 28.4 12.6 51 42-92 46-96 (141)
21 COG5325 t-SNARE complex subuni 87.4 2.9 6.2E-05 34.2 6.9 77 125-201 195-275 (283)
22 COG5074 t-SNARE complex subuni 87.3 3.6 7.8E-05 32.9 7.2 42 125-166 185-226 (280)
23 PF04628 Sedlin_N: Sedlin, N-t 83.8 6.5 0.00014 28.5 6.9 84 7-90 1-105 (132)
24 PF04799 Fzo_mitofusin: fzo-li 82.0 11 0.00025 28.7 7.6 53 126-178 110-162 (171)
25 PF09753 Use1: Membrane fusion 81.4 8.2 0.00018 31.2 7.2 44 158-202 197-242 (251)
26 PF06008 Laminin_I: Laminin Do 80.7 25 0.00054 28.6 9.9 61 106-171 178-238 (264)
27 KOG2635 Medium subunit of clat 80.4 40 0.00088 29.7 11.7 77 3-80 4-83 (512)
28 PF03164 Mon1: Trafficking pro 74.5 59 0.0013 28.5 11.9 86 7-92 16-104 (415)
29 smart00096 UTG Uteroglobin. 70.2 20 0.00043 23.1 5.3 42 110-151 20-62 (69)
30 PHA02557 22 prohead core prote 69.3 36 0.00077 27.9 7.7 94 76-169 89-191 (271)
31 PF12352 V-SNARE_C: Snare regi 65.1 31 0.00066 21.4 7.7 58 124-181 7-64 (66)
32 COG5074 t-SNARE complex subuni 64.3 23 0.0005 28.5 5.6 10 76-85 106-115 (280)
33 PF10779 XhlA: Haemolysin XhlA 61.1 41 0.00088 21.5 6.7 34 152-185 19-52 (71)
34 KOG0810 SNARE protein Syntaxin 59.1 1.1E+02 0.0023 25.7 9.3 44 134-180 228-271 (297)
35 PF03904 DUF334: Domain of unk 56.3 1E+02 0.0022 24.7 8.4 30 108-137 77-109 (230)
36 KOG3369 Transport protein part 53.6 1E+02 0.0022 23.7 8.5 73 41-116 121-196 (199)
37 PF01099 Uteroglobin: Uteroglo 52.5 17 0.00037 23.0 2.7 43 108-150 16-59 (67)
38 PTZ00478 Sec superfamily; Prov 52.5 36 0.00077 22.6 4.2 47 148-194 9-55 (81)
39 cd00633 Secretoglobin Secretog 51.9 29 0.00062 21.9 3.7 43 108-150 16-59 (67)
40 PF04510 DUF577: Family of unk 50.8 79 0.0017 24.2 6.4 45 134-188 128-172 (174)
41 PF05739 SNARE: SNARE domain; 50.6 55 0.0012 19.8 7.9 42 125-166 4-45 (63)
42 KOG0812 SNARE protein SED5/Syn 50.2 91 0.002 26.0 7.0 37 125-161 227-263 (311)
43 PF02009 Rifin_STEVOR: Rifin/s 48.3 17 0.00036 30.4 2.6 49 106-156 32-84 (299)
44 PF03607 DCX: Doublecortin; I 47.9 26 0.00056 21.6 2.9 47 23-69 9-57 (60)
45 cd07912 Tweety_N N-terminal do 45.8 1.3E+02 0.0027 26.6 7.7 41 104-146 104-144 (418)
46 PF06695 Sm_multidrug_ex: Puta 45.4 66 0.0014 22.9 5.1 27 170-198 56-82 (121)
47 smart00397 t_SNARE Helical reg 44.4 69 0.0015 19.2 6.1 44 125-168 12-55 (66)
48 PF03238 ESAG1: ESAG protein; 44.3 77 0.0017 25.1 5.5 54 142-195 6-59 (231)
49 PHA03011 hypothetical protein; 43.9 76 0.0017 22.0 4.8 58 106-165 61-118 (120)
50 PRK09400 secE preprotein trans 43.3 49 0.0011 20.7 3.6 41 156-196 4-44 (61)
51 KOG1666 V-SNARE [Intracellular 42.1 1.8E+02 0.0038 23.2 7.8 43 157-199 164-209 (220)
52 PHA01811 hypothetical protein 40.6 33 0.00071 21.6 2.4 19 41-59 4-22 (78)
53 PF09753 Use1: Membrane fusion 39.7 1.2E+02 0.0026 24.4 6.4 39 158-198 204-242 (251)
54 cd01617 DCX Ubiquitin-like dom 39.3 1.1E+02 0.0023 20.0 5.6 53 18-70 21-77 (80)
55 KOG2740 Clathrin-associated pr 38.5 1.1E+02 0.0025 26.3 6.0 45 48-92 52-96 (418)
56 cd00193 t_SNARE Soluble NSF (N 38.1 85 0.0018 18.4 6.2 43 125-167 6-48 (60)
57 COG3524 KpsE Capsule polysacch 37.3 49 0.0011 27.8 3.7 18 124-141 229-246 (372)
58 PF06825 HSBP1: Heat shock fac 37.1 58 0.0013 19.8 3.1 39 128-169 13-51 (54)
59 PRK11546 zraP zinc resistance 36.2 1.8E+02 0.0039 21.6 6.2 57 78-142 50-106 (143)
60 COG3074 Uncharacterized protei 36.0 1.2E+02 0.0026 19.5 6.9 53 125-177 18-70 (79)
61 PF07897 DUF1675: Protein of u 35.3 40 0.00086 28.0 2.9 25 48-72 238-262 (284)
62 PRK01026 tetrahydromethanopter 34.4 56 0.0012 21.4 2.9 29 153-183 22-50 (77)
63 KOG4827 Uncharacterized conser 34.1 20 0.00043 28.0 0.9 20 182-201 239-258 (279)
64 PF11675 DUF3271: Protein of u 34.1 1.6E+02 0.0034 23.8 5.9 52 2-55 30-81 (249)
65 COG5122 TRS23 Transport protei 33.9 1.7E+02 0.0038 20.8 8.7 82 32-116 46-132 (134)
66 PF06008 Laminin_I: Laminin Do 33.3 1.8E+02 0.0039 23.5 6.5 54 127-180 54-107 (264)
67 cd07634 BAR_GAP10-like The Bin 33.3 2.3E+02 0.0051 22.3 6.8 72 75-149 13-94 (207)
68 PF03310 Cauli_DNA-bind: Cauli 32.7 1.9E+02 0.0041 20.8 5.9 43 129-171 3-45 (121)
69 TIGR01149 mtrG N5-methyltetrah 32.1 68 0.0015 20.6 2.9 29 153-183 19-47 (70)
70 PF05478 Prominin: Prominin; 31.8 4E+02 0.0088 25.6 9.4 16 127-142 359-374 (806)
71 KOG3385 V-SNARE [Intracellular 31.7 1.2E+02 0.0026 21.6 4.4 19 125-143 36-54 (118)
72 KOG3230 Vacuolar assembly/sort 31.4 2.2E+02 0.0048 22.4 6.1 23 131-153 132-154 (224)
73 PF05527 DUF758: Domain of unk 30.5 1.1E+02 0.0024 23.7 4.5 77 68-153 108-185 (186)
74 PRK12430 putative bifunctional 30.4 54 0.0012 28.2 3.0 45 156-200 104-148 (379)
75 PF10168 Nup88: Nuclear pore c 30.0 3.9E+02 0.0084 25.4 8.7 79 72-157 533-614 (717)
76 PTZ00046 rifin; Provisional 29.9 1.3E+02 0.0027 25.9 5.1 45 106-151 52-100 (358)
77 PF08923 MAPKK1_Int: Mitogen-a 29.4 2.1E+02 0.0046 20.4 11.4 84 4-87 18-112 (119)
78 PF08858 IDEAL: IDEAL domain; 28.8 1.1E+02 0.0024 16.9 3.3 19 136-154 9-27 (37)
79 KOG3065 SNAP-25 (synaptosome-a 28.3 2.4E+02 0.0053 23.3 6.4 47 125-171 218-264 (273)
80 PF13040 DUF3901: Protein of u 28.3 87 0.0019 17.8 2.7 27 138-164 9-35 (40)
81 TIGR03545 conserved hypothetic 28.2 2.5E+02 0.0054 25.8 7.0 70 106-175 168-241 (555)
82 PF00306 ATP-synt_ab_C: ATP sy 28.1 1.2E+02 0.0025 21.1 4.0 41 141-181 3-45 (113)
83 PF07798 DUF1640: Protein of u 27.3 2.8E+02 0.006 21.0 8.1 26 125-150 80-105 (177)
84 PF02520 DUF148: Domain of unk 27.3 2.1E+02 0.0046 19.7 6.4 61 82-151 2-62 (113)
85 PF04155 Ground-like: Ground-l 26.5 1E+02 0.0022 19.8 3.2 12 136-147 10-21 (76)
86 PHA02845 hypothetical protein; 26.4 60 0.0013 22.0 2.1 18 180-197 59-76 (91)
87 TIGR01478 STEVOR variant surfa 26.3 38 0.00082 28.1 1.3 39 109-147 83-125 (295)
88 PF05803 Chordopox_L2: Chordop 26.2 41 0.00089 22.7 1.3 20 181-200 59-78 (87)
89 KOG3003 Molecular chaperone of 25.2 3.5E+02 0.0076 21.8 6.5 47 125-172 71-117 (236)
90 PF00482 T2SF: Type II secreti 24.9 2.2E+02 0.0047 19.0 5.3 24 178-201 94-117 (124)
91 TIGR03517 GldM_gliding gliding 24.8 4.3E+02 0.0094 24.1 7.8 60 125-184 41-101 (523)
92 PLN03223 Polycystin cation cha 24.6 1.4E+02 0.003 30.6 4.9 43 125-167 1581-1623(1634)
93 PF13228 DUF4037: Domain of un 24.5 2.4E+02 0.0052 19.3 6.0 57 105-165 23-79 (100)
94 PHA03386 P10 fibrous body prot 24.4 1.4E+02 0.003 20.4 3.5 14 125-138 19-32 (94)
95 TIGR02338 gimC_beta prefoldin, 24.4 2.2E+02 0.0047 19.7 4.8 38 130-170 61-98 (110)
96 KOG0809 SNARE protein TLG2/Syn 24.3 1.6E+02 0.0035 24.6 4.6 38 125-162 218-255 (305)
97 KOG3894 SNARE protein Syntaxin 24.2 4.4E+02 0.0095 22.3 7.6 60 107-171 216-282 (316)
98 COG2018 Uncharacterized distan 24.2 2.8E+02 0.006 19.9 8.1 69 7-75 24-103 (119)
99 KOG3368 Transport protein part 23.6 3E+02 0.0065 20.2 7.7 61 29-91 45-108 (140)
100 TIGR03017 EpsF chain length de 23.6 4.9E+02 0.011 22.6 9.3 40 110-151 269-308 (444)
101 PF03670 UPF0184: Uncharacteri 23.2 1.8E+02 0.0038 19.5 3.8 28 156-183 43-70 (83)
102 PF11657 Activator-TraM: Trans 21.7 3.4E+02 0.0074 20.1 11.4 15 105-119 49-63 (144)
103 PF10436 BCDHK_Adom3: Mitochon 21.1 3.6E+02 0.0079 20.2 6.3 33 104-141 81-113 (164)
104 PF04210 MtrG: Tetrahydrometha 20.6 1.9E+02 0.004 18.7 3.4 29 153-183 19-47 (70)
105 PF10831 DUF2556: Protein of u 20.0 31 0.00068 20.3 -0.2 16 186-201 3-18 (53)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-63 Score=374.87 Aligned_cols=202 Identities=49% Similarity=0.860 Sum_probs=195.8
Q ss_pred CceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHH
Q 028882 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (202)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL 80 (202)
|+|+|++||||++|||||++.+|||..++.++|+++|+.+++|.+|+.|+|.|||+.+||++|+|++|.+.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 89999999999999999999999999999999999996667899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHh
Q 028882 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVD 160 (202)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ 160 (202)
++|++.|.+.|+....++.+|+++..|++.|++.|+.|.++|.-|++.+++.+++|+|++|.||||++++|||+||.|++
T Consensus 81 e~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhheeeC
Q 028882 161 KTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCLYL 202 (202)
Q Consensus 161 ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~~~ 202 (202)
||++|+.+|..|++++++++|+|||+|.|+++++++++++++
T Consensus 161 KTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~i 202 (217)
T KOG0859|consen 161 KTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLI 202 (217)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHH
Confidence 999999999999999999999999999999999988877653
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-37 Score=236.47 Aligned_cols=198 Identities=23% Similarity=0.492 Sum_probs=179.6
Q ss_pred eEEEEEEe--CCeEEEeecC----CCCC---HHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCc
Q 028882 3 ILFSLVAR--GSVVLAECSA----TATN---ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR 73 (202)
Q Consensus 3 I~Ya~Iar--~~~iLae~~~----~~~~---~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~ 73 (202)
|++++|+| +++|||...+ .+++ +++.++.+++++.+.++++++.+.|.|.|||+.++++||+++||..||+
T Consensus 2 i~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP~ 81 (216)
T KOG0862|consen 2 ILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYPR 81 (216)
T ss_pred ceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCcH
Confidence 78999999 5899998777 2233 3679999999999656999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhhchhhhc--ccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 74 RIPFAFLEDIHQRFVKTYGRAVLS--AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 74 ~~a~~fL~~i~~~f~~~~~~~~~~--~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
.+||+||+++.++|...|+....+ ++||++. .|+++|++.-++||+...++.+.++++++.+|+.+|.+||+.+++|
T Consensus 82 kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~Fi-eFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~r 160 (216)
T KOG0862|consen 82 KLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFI-EFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQR 160 (216)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccCCCeeEE-ehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 999999999999999999976654 4899885 9999999999999765567999999999999999999999999999
Q ss_pred ccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhheee
Q 028882 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCLY 201 (202)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~~ 201 (202)
||.|+.|..++.+|+..|+.++++|+.++++..|.+|.-++.++.++++|
T Consensus 161 g~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~ 210 (216)
T KOG0862|consen 161 GEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFY 210 (216)
T ss_pred chHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999777777666665
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=201.70 Aligned_cols=176 Identities=23% Similarity=0.371 Sum_probs=148.1
Q ss_pred CceEEEEEEeC----CeEEEeecCCC-------CCH----HHHHHHHhccCCCCCCCceEEeeCCEEEEEEEe-CCEEEE
Q 028882 1 MAILFSLVARG----SVVLAECSATA-------TNA----SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRT-DGLTVL 64 (202)
Q Consensus 1 M~I~Ya~Iar~----~~iLae~~~~~-------~~~----~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~-~~~~~~ 64 (202)
|.|++..|-+- ..+|+.-.+-+ ++. ..+++.+.+|.++ .++++++++.|.+|.... +|++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~--g~rqsvk~~~Y~~h~yvrndgL~~V 78 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP--GQRQSVKHEEYLVHVYVRNDGLCGV 78 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc--ccccccccceeEEEEEEecCCeeEE
Confidence 88888888884 26666555421 332 3588999999986 899999999999997666 599999
Q ss_pred EEEcCCCCcccHHHHHHHHHHHHhhhhc-hhhhcccccCCCchhhhHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHH
Q 028882 65 CMADDTAGRRIPFAFLEDIHQRFVKTYG-RAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMI 142 (202)
Q Consensus 65 ~vt~~~~~~~~a~~fL~~i~~~f~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~ 142 (202)
+++|.+||.++||.+|.+|.++|....+ .+|. ....+. .+| +.|..++.+| +||.+ |+|.++|+++||+|.||.
T Consensus 79 ~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~-~~~~~~-~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLh 154 (198)
T KOG0861|consen 79 LIADDEYPVRVAFTLLNKVLDEFTTKVPATQWP-VGETAD-LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILH 154 (198)
T ss_pred EEecCcCchhHHHHHHHHHHHHHhhcCcccccC-cCCCcC-CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999965544 4554 322222 255 8999999999 78876 999999999999999999
Q ss_pred HhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 028882 143 ENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRST 182 (202)
Q Consensus 143 ~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~ 182 (202)
+.|+.+|+|||+||+|++|||+|+.+|++|.|+|||-++.
T Consensus 155 kTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~NsC 194 (198)
T KOG0861|consen 155 KTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNSC 194 (198)
T ss_pred HHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999997753
No 4
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=173.77 Aligned_cols=82 Identities=28% Similarity=0.629 Sum_probs=77.2
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhe
Q 028882 120 DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTC 199 (202)
Q Consensus 120 ~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~ 199 (202)
+++.++++.+++.+||||.+||.+||+|+|||||||++|++||++|+..|..|++.|.+|+|+|||+|.|+.++++++++
T Consensus 24 ~~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~ 103 (116)
T KOG0860|consen 24 NNTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVII 103 (116)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ee
Q 028882 200 LY 201 (202)
Q Consensus 200 ~~ 201 (202)
++
T Consensus 104 i~ 105 (116)
T KOG0860|consen 104 IL 105 (116)
T ss_pred HH
Confidence 65
No 5
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.94 E-value=7.8e-26 Score=171.35 Aligned_cols=181 Identities=20% Similarity=0.382 Sum_probs=144.2
Q ss_pred CceEEEEEEeCC--eEEEeec-CCCCCH--HHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeC-CEEEEEEEcCCCCcc
Q 028882 1 MAILFSLVARGS--VVLAECS-ATATNA--SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD-GLTVLCMADDTAGRR 74 (202)
Q Consensus 1 M~I~Ya~Iar~~--~iLae~~-~~~~~~--~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~-~~~~~~vt~~~~~~~ 74 (202)
|+++|..+..+. .++++-- ..+..| ...+..+|.++.|...++..++.++|.|||...+ |++|+|+|+++||.+
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~ 80 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK 80 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence 566666666663 4444433 233333 4678888888876667788899999999998765 999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhchhhhc-c-cccCCCchhhhHHHHHhhhhcCCcc-chhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 75 IPFAFLEDIHQRFVKTYGRAVLS-A-QAYGMNDEFSRVLSQQMEYYSDDPN-ADRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 75 ~a~~fL~~i~~~f~~~~~~~~~~-~-~~~~~~~~f~~~l~~~~~~y~~~~~-~dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
+|+..++++..+|........+. . .++. ...|++.+.+ .| ++|. +|++.+++.+++|++++|.+||++++.|
T Consensus 81 la~~~~~~~~~~~~~s~~~~~~~d~~~~~~-~~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R 155 (190)
T COG5143 81 LAYGYLNSIATEFLKSSALEQLIDDTVGIM-RVNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYR 155 (190)
T ss_pred hhhHHHHhhccHhhhhhhHhhcccCccchh-hhhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999988766544322 2 2222 2355666555 38 4564 5999999999999999999999999999
Q ss_pred ccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 028882 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWR 186 (202)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~ 186 (202)
||+|+.|+++|+.|..+|+.|++.|++.++.+||+
T Consensus 156 ~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 156 DEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 99999999999999999999999999999999994
No 6
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.93 E-value=2.4e-26 Score=157.85 Aligned_cols=78 Identities=38% Similarity=0.767 Sum_probs=75.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhheee
Q 028882 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCLY 201 (202)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~~ 201 (202)
+|++.++++++++|+++|.+||+++++|||+|++|+++|++|+.+|..|+++|++++|+|||+|+|++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~ 79 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIII 79 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhh
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999888765
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.80 E-value=5.2e-19 Score=119.80 Aligned_cols=81 Identities=43% Similarity=0.838 Sum_probs=71.0
Q ss_pred HHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhc-hhhhcccccCCCch
Q 028882 28 IARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG-RAVLSAQAYGMNDE 106 (202)
Q Consensus 28 ~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~-~~~~~~~~~~~~~~ 106 (202)
+|+.+|++++++.++|.+++.|+|.||++.++|++|+|+||++||+++||.||++|+++|...|+ ..+.++.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 58999999995445899999999999999999999999999999999999999999999999999 56666678888 68
Q ss_pred hhh
Q 028882 107 FSR 109 (202)
Q Consensus 107 f~~ 109 (202)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 865
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.64 E-value=7.9e-05 Score=57.22 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 028882 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLAD 197 (202)
Q Consensus 126 kl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~ 197 (202)
+...++...++++.+|..|+|++++||++...+.|+.++|+.+.+.|++-+-+...++|||.-|+=..++..
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~s 166 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLS 166 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999999999999999998876665543
No 9
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=95.10 E-value=0.13 Score=42.27 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=51.1
Q ss_pred HHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeC--CEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhchhhhc--c-cc
Q 028882 26 SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS--A-QA 100 (202)
Q Consensus 26 ~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~--~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~~~~--~-~~ 100 (202)
..+++.+|=.= .....++++++|..++...| +++||+|-..-..-.-+=.||+.|+..|...|+..... . ..
T Consensus 5 n~LI~~vllee---R~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~~ 81 (279)
T PF04086_consen 5 NALIRDVLLEE---RSGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNTS 81 (279)
T ss_dssp HHHHHHTGGG----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHHH
T ss_pred HHHHHHhheee---ccCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhccccccc
Confidence 45666666331 13556789999998887765 79999999988888788899999999999999865321 1 10
Q ss_pred cCCCchhhhHHHHHhhhhc
Q 028882 101 YGMNDEFSRVLSQQMEYYS 119 (202)
Q Consensus 101 ~~~~~~f~~~l~~~~~~y~ 119 (202)
......|+..+.+++....
T Consensus 82 ~~~~~~Fd~~F~~~l~~~e 100 (279)
T PF04086_consen 82 INEYFDFDEEFDQLLKELE 100 (279)
T ss_dssp HT-----HHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHH
Confidence 0011256666666666663
No 10
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=94.71 E-value=0.046 Score=39.53 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=39.2
Q ss_pred HHHHH-HHHhccCCCC---CCCceEEe-eCCEEEEEEE---eCCEEEEEEEcCCCCcccHHHHHHHHHH
Q 028882 25 ASAIA-RQILDKIPGN---NDSHVSYS-QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (202)
Q Consensus 25 ~~~~a-~~vL~ki~~~---~~~k~~~~-~~~~~fh~l~---~~~~~~~~vt~~~~~~~~a~~fL~~i~~ 85 (202)
|..++ .-+++++.|- .-+|+++. .+||-++|.+ +++-+++|++..+.|+-++...|.|++.
T Consensus 42 FH~Li~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 42 FHKLIHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHHHHHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred HHHHHhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 44444 3446776642 34555655 6899988877 4789999999999999999999999874
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=0.44 Score=39.05 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNT 169 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s 169 (202)
..+.+++.++.||.+|+.+==..|=+-|+.+|++++.-++...+.
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 678899999999999998877778899999999998877766444
No 12
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=92.39 E-value=2.4 Score=28.75 Aligned_cols=63 Identities=11% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHH----------HHHHHHHHHHHHHHhhHHHHhh
Q 028882 130 IKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFR----------KQARRFRSTVWWRNVKLTYVLL 195 (202)
Q Consensus 130 ~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~----------~~s~~l~r~~~w~~~k~~iii~ 195 (202)
+-+.+..+++.|.+.+++- ...++.|.+.|+.|......|. +--+++.|+.|.-++-+++.++
T Consensus 6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~ 78 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455566666666554433 3445556666666655444433 3344567777766665554443
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.24 E-value=2.4 Score=28.41 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQA 176 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s 176 (202)
+++..++..+.+.-+-+.++=+++=+=.++-+.|.+.|+....+|...++..
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566666666666666666555555555567788899999999999986665
No 14
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=1.9 Score=35.98 Aligned_cols=40 Identities=13% Similarity=0.365 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTAN 164 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~ 164 (202)
+.+.+++..+.|++++-.+==-.|...||.++.++...++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~ 245 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVEN 245 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6678888888888888877667778889988888765443
No 15
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=90.38 E-value=4.3 Score=29.92 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=31.8
Q ss_pred CCceEEeeCCEEEEEEE-eCCEEEEEEEcCCCCcccHHHHHHHHHHHHh
Q 028882 41 DSHVSYSQDRYIFHVKR-TDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88 (202)
Q Consensus 41 ~~k~~~~~~~~~fh~l~-~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~ 88 (202)
..-.+++.+.|..|+.- ..|+-|+++||++.+. ..-.++..+.+.|.
T Consensus 65 ~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~ 112 (142)
T PF04099_consen 65 SGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYV 112 (142)
T ss_dssp -SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHH
Confidence 45678899999999764 6999999999999863 34445555555554
No 16
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=89.93 E-value=3.2 Score=28.11 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhh----hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTAN----MQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADT 198 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~----L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~ 198 (202)
+.|..+.+.+.+.-+-...|.+.+-+.-+.|..+.+.=.. |..+.+...+--++-+.-.|+=-.-+.+.+++++
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556666666666666666777666666666655544333 3333333333333333333333344555554443
No 17
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=3.6 Score=36.57 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=64.5
Q ss_pred CceEEEEEEeCCeEEEeecCCCCCHHH----HHHHHhccCCCCCCCceEEeeCCEEEEEEEe--CCEEEEEEEcCCCCcc
Q 028882 1 MAILFSLVARGSVVLAECSATATNASA----IARQILDKIPGNNDSHVSYSQDRYIFHVKRT--DGLTVLCMADDTAGRR 74 (202)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~----~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~--~~~~~~~vt~~~~~~~ 74 (202)
|-=.++.+.+|++||..|.....+|.. .++.+|-.=. .+--+++.+.|..-|-.+ -+++|+|+-..-..-.
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er---~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~ 77 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER---GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLT 77 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh---cCcccCchhheeEeeeecCCccEEEEEEEeccchhh
Confidence 333678899999999999987766643 4444442211 222237788888766554 5789999998887777
Q ss_pred cHHHHHHHHHHHHhhhhc
Q 028882 75 IPFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 75 ~a~~fL~~i~~~f~~~~~ 92 (202)
.+-.+|+++.+.|...|.
T Consensus 78 yv~~ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 78 YVDKLLNDVLNLFREKYD 95 (587)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 788999999999998875
No 18
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=3.8 Score=34.65 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=74.8
Q ss_pred EEEEEEeCCeEEEee-cC-CCCCHHHHHHH-HhccCCCCCCCc-eEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHH
Q 028882 4 LFSLVARGSVVLAEC-SA-TATNASAIARQ-ILDKIPGNNDSH-VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAF 79 (202)
Q Consensus 4 ~Ya~Iar~~~iLae~-~~-~~~~~~~~a~~-vL~ki~~~~~~k-~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~f 79 (202)
+|..=.||.++++.. .+ -.++..++.+- ++.. .+.+ -..+.|+-.||+...+++-.+++|..+......|.|
T Consensus 5 lfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n----~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eF 80 (446)
T KOG0938|consen 5 LFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN----LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEF 80 (446)
T ss_pred EEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc----cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHH
Confidence 344445677777752 22 23444333332 2222 2233 355789999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHH
Q 028882 80 LEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEM 134 (202)
Q Consensus 80 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v 134 (202)
|.++-+-+..-|+...+.+.+..+. |--.|-+.|-.| .-|.+-....+...+
T Consensus 81 l~kl~avm~aYfgk~~Eeaiknnf~--lI~ElLDemld~-G~pqnte~~al~~~i 132 (446)
T KOG0938|consen 81 LYKLDAVMNAYFGKDREEAIKNNFV--LIYELLDEMLDF-GIPQNTEPNALKAQI 132 (446)
T ss_pred HHHHHHHHHHHhcccchhhhhhceE--eHHHHHHHHHhc-CCCccCChhHHHhhh
Confidence 9999888876566333333333332 233444444446 456654444444433
No 19
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=0.44 Score=46.13 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=38.1
Q ss_pred HHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 028882 141 MIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRN 187 (202)
Q Consensus 141 m~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~ 187 (202)
...--+.+.+|||+|+.++++|+++++++.+|...|.++--++-.++
T Consensus 943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk 989 (993)
T KOG1983|consen 943 ASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKK 989 (993)
T ss_pred hhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhh
Confidence 33445678999999999999999999999999999888765544443
No 20
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=88.80 E-value=7.4 Score=28.35 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=42.1
Q ss_pred CceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhc
Q 028882 42 SHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 42 ~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~ 92 (202)
.--.+.++++.+-|..-+++.|+++++.+.+.-....||..+.+.+..-++
T Consensus 46 ~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 46 QSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp STSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred cceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 345678899999888889999999999999988888888888877765444
No 21
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.44 E-value=2.9 Score=34.23 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhh----hhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhee
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDK----TANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCL 200 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~k----s~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~ 200 (202)
..+..+..-|.|+.+|..+==.-|.+-|+.++.+.-. +.+|+..++...+.-..-||.-.|+-|-+++++++.+++
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv 274 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFV 274 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHH
Confidence 4567778888888888888777888999988876544 445555556665555555666666666555555444444
Q ss_pred e
Q 028882 201 Y 201 (202)
Q Consensus 201 ~ 201 (202)
|
T Consensus 275 ~ 275 (283)
T COG5325 275 S 275 (283)
T ss_pred H
Confidence 3
No 22
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.29 E-value=3.6 Score=32.93 Aligned_cols=42 Identities=14% Similarity=0.368 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~ 166 (202)
..|.+++.-+.|+.+...+==+.++++.|..|.+.+..++-.
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~ 226 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 226 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHH
Confidence 446667777777777776666788999999999888777655
No 23
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=83.85 E-value=6.5 Score=28.51 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=46.7
Q ss_pred EEEeCCeEEEeecCC--CCC--------HHH---HHHHHhccCCCC-C---CCceEEeeCCEE-EEEEEeCCEEEEEEEc
Q 028882 7 LVARGSVVLAECSAT--ATN--------ASA---IARQILDKIPGN-N---DSHVSYSQDRYI-FHVKRTDGLTVLCMAD 68 (202)
Q Consensus 7 ~Iar~~~iLae~~~~--~~~--------~~~---~a~~vL~ki~~~-~---~~k~~~~~~~~~-fh~l~~~~~~~~~vt~ 68 (202)
.|.++..||-+++.. ++. ++. .+..+++..... . .-+.....+++. |-|++..++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 367777787766542 222 222 344555432211 1 123455667876 5588888999998887
Q ss_pred ---CCCCcccHHHHHHHHHHHHhhh
Q 028882 69 ---DTAGRRIPFAFLEDIHQRFVKT 90 (202)
Q Consensus 69 ---~~~~~~~a~~fL~~i~~~f~~~ 90 (202)
..........|+.++++.|...
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~ 105 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKA 105 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHH
Confidence 4555566788999999888754
No 24
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=82.04 E-value=11 Score=28.70 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHH
Q 028882 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARR 178 (202)
Q Consensus 126 kl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~ 178 (202)
-...+..+|++++.-|.+.|+.+=..=++||.+..++..|.+.+..+...=..
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998888988888888877777666544433
No 25
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=81.39 E-value=8.2 Score=31.24 Aligned_cols=44 Identities=9% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHH--HHHhhHHHHhhhhheeeC
Q 028882 158 LVDKTANMQGNTFRFRKQARRFRSTVW--WRNVKLTYVLLADTCLYL 202 (202)
Q Consensus 158 L~~ks~~L~~~s~~f~~~s~~l~r~~~--w~~~k~~iii~~~~~~~~ 202 (202)
|..-.+.+..+.......+.+|+.+.. |+ |..|++|++++++||
T Consensus 197 L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 197 LDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence 444444555555666666666555432 33 555556666666664
No 26
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.70 E-value=25 Score=28.60 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=37.1
Q ss_pred hhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHH
Q 028882 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFR 171 (202)
Q Consensus 106 ~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~ 171 (202)
...+.+.+.+..|+ +|+..++.-+++..+...+--+..-.+..+++++..|-+.++..-..
T Consensus 178 ~l~~~i~~~L~~~~-----~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~ 238 (264)
T PF06008_consen 178 SLAEAIRDDLNDYN-----AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNE 238 (264)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777774 56777777777766666665555555556666666666665544433
No 27
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=40 Score=29.69 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=43.9
Q ss_pred eEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCC--C-CCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHH
Q 028882 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPG--N-NDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAF 79 (202)
Q Consensus 3 I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~--~-~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~f 79 (202)
+..+++.+++..+..-... .....-+..+|.-.|. . ..+...++.+++-|.|-.-+.+-++.||..++..-....-
T Consensus 4 laa~i~t~~Gk~ivsRqf~-~Msr~RIEgLl~aFpkLv~~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl~T 82 (512)
T KOG2635|consen 4 LAASINTKTGKAIVSRQFR-EMSRSRIEGLLAAFPKLVSAGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDLET 82 (512)
T ss_pred EEEEEeecCCceeeehHhH-hhhHHHHHHHHHHhHHhhccCCCccEEecccEEEEEEecccEEEEEEeccccchhhHHHH
Confidence 3445555666444433221 1122333444433221 1 2344566788888888888999999999999876554433
Q ss_pred H
Q 028882 80 L 80 (202)
Q Consensus 80 L 80 (202)
|
T Consensus 83 L 83 (512)
T KOG2635|consen 83 L 83 (512)
T ss_pred H
Confidence 3
No 28
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=74.46 E-value=59 Score=28.45 Aligned_cols=86 Identities=7% Similarity=0.050 Sum_probs=59.1
Q ss_pred EEEeCCeEEEeec-CCC--CCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHH
Q 028882 7 LVARGSVVLAECS-ATA--TNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDI 83 (202)
Q Consensus 7 ~Iar~~~iLae~~-~~~--~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i 83 (202)
.....|+|+...- ++. ..+-.+.+.++.-.....++-..+..|+..|.|+.++.+.++|++..+.+......-|+-+
T Consensus 16 IlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~l 95 (415)
T PF03164_consen 16 ILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYL 95 (415)
T ss_pred EECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHH
Confidence 3344466665422 211 1234455666655443346667888899999999999999999999999977777888888
Q ss_pred HHHHhhhhc
Q 028882 84 HQRFVKTYG 92 (202)
Q Consensus 84 ~~~f~~~~~ 92 (202)
.....+..+
T Consensus 96 y~qils~lt 104 (415)
T PF03164_consen 96 YSQILSILT 104 (415)
T ss_pred HHHHHHhcc
Confidence 877766554
No 29
>smart00096 UTG Uteroglobin.
Probab=70.21 E-value=20 Score=23.09 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 110 VLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 110 ~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
....-++.|+.+|.. +...++++-+|....-=.+||-++|++
T Consensus 20 ~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 20 SYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345567789766654 778888998988877777788877753
No 30
>PHA02557 22 prohead core protein; Provisional
Probab=69.31 E-value=36 Score=27.89 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhc-CCccc--hhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 028882 76 PFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS-DDPNA--DRINRIKGEMSQVRNVMIENIDKVLERG 152 (202)
Q Consensus 76 a~~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~-~~~~~--dkl~~~~~~v~~v~~im~~Ni~~~l~Rg 152 (202)
+-+||+.+-++|...-+-.........+..+|-.-|+.+....| .-|.+ |.+..+..+|++-.+-..+-++...+..
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888886544333333334455567777777665554 23443 8899999999999998888888888777
Q ss_pred cchhH------HHhhhhhhhhhH
Q 028882 153 DRLEL------LVDKTANMQGNT 169 (202)
Q Consensus 153 e~l~~------L~~ks~~L~~~s 169 (202)
+.++. +.+.|++|..+.
T Consensus 169 e~i~~~~r~~i~~e~t~gLtdsQ 191 (271)
T PHA02557 169 EYINEVKREVILSEVTKDLTESQ 191 (271)
T ss_pred HHHHHHHHHHHHHHHHcchhHHH
Confidence 77765 556677776554
No 31
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=65.15 E-value=31 Score=21.44 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHH
Q 028882 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (202)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r 181 (202)
.+.|.....-++++.++-.+....+-.-++.|....++..++...-..=.+--+++.|
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 3678889999999999999999999999999998888888777665554333344433
No 32
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=64.26 E-value=23 Score=28.49 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=6.2
Q ss_pred HHHHHHHHHH
Q 028882 76 PFAFLEDIHQ 85 (202)
Q Consensus 76 a~~fL~~i~~ 85 (202)
-..||+.|.+
T Consensus 106 r~Kf~~~I~~ 115 (280)
T COG5074 106 RQKFLKLIQD 115 (280)
T ss_pred HHHHHHHHHH
Confidence 3477777763
No 33
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.08 E-value=41 Score=21.50 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=19.2
Q ss_pred ccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 028882 152 GDRLELLVDKTANMQGNTFRFRKQARRFRSTVWW 185 (202)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w 185 (202)
.++++.|+..++.+......-..+-.+++-...|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665555555555555555544
No 34
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.08 E-value=1.1e+02 Score=25.68 Aligned_cols=44 Identities=16% Similarity=0.417 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHH
Q 028882 134 MSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180 (202)
Q Consensus 134 v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~ 180 (202)
+=+-++-|.++|+.=.+++ .+-+++..+=-..|..++++|++.+
T Consensus 228 LVe~QgEmvd~IE~nV~~A---~~~V~~g~~~~~kAv~~qkkaRK~k 271 (297)
T KOG0810|consen 228 LVESQGEMVDRIENNVENA---VDYVEQGVDHLKKAVKYQKKARKWK 271 (297)
T ss_pred HHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhce
Confidence 4456777777777655544 2333332222234455555554433
No 35
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=56.27 E-value=1e+02 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=14.4
Q ss_pred hhHHHHHhhhhcCCc---cchhHHHHHHHHHHH
Q 028882 108 SRVLSQQMEYYSDDP---NADRINRIKGEMSQV 137 (202)
Q Consensus 108 ~~~l~~~~~~y~~~~---~~dkl~~~~~~v~~v 137 (202)
...|.+..+.|.+.. .+|=+..++.++++|
T Consensus 77 ~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 77 KSSLEETTKDFIDKTEKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555564321 124455555555544
No 36
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.59 E-value=1e+02 Score=23.74 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=48.0
Q ss_pred CCceEEeeCCEEEEEE-EeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhchhhhc-c-cccCCCchhhhHHHHHhh
Q 028882 41 DSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-A-QAYGMNDEFSRVLSQQME 116 (202)
Q Consensus 41 ~~k~~~~~~~~~fh~l-~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~~~~-~-~~~~~~~~f~~~l~~~~~ 116 (202)
.....++.+.+..|.. +-.|+-|++++++.. ..|-.+|..|...|. +|.-+... + .=+--+..|+..|+.+++
T Consensus 121 SGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYs-DyvlKNPfYSlEMPIRc~lFDe~lk~~le 196 (199)
T KOG3369|consen 121 SGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYS-DYVLKNPFYSLEMPIRCELFDEKLKFLLE 196 (199)
T ss_pred CceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHH-HHhhcCCccCcccceeHHHhhHHHHHHHh
Confidence 4667888899987754 468999999999877 467788988887765 55432211 0 001112467777776655
No 37
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=52.48 E-value=17 Score=22.97 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=29.6
Q ss_pred hhHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHHHHHH
Q 028882 108 SRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLE 150 (202)
Q Consensus 108 ~~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~~~l~ 150 (202)
....+..+++|+.+|.. +...++++-+++...-=..||.++|+
T Consensus 16 ~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 59 (67)
T PF01099_consen 16 PEEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLE 59 (67)
T ss_dssp HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667778888665544 77788888888888777888888775
No 38
>PTZ00478 Sec superfamily; Provisional
Probab=52.48 E-value=36 Score=22.63 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 028882 148 VLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVL 194 (202)
Q Consensus 148 ~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii 194 (202)
+.+..+.++.+.+...+.-.+|.+|-+..+|=.|+.+.+-.+...+-
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iG 55 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVG 55 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34445556777777777778888888888888888887776655443
No 39
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=51.91 E-value=29 Score=21.86 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=31.8
Q ss_pred hhHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHHHHHH
Q 028882 108 SRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLE 150 (202)
Q Consensus 108 ~~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~~~l~ 150 (202)
...+...++.||.+|.. +...++++-+++...-=..|+-++|+
T Consensus 16 ~~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 16 EEEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 46667788889776654 77888888888876666677777664
No 40
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=50.76 E-value=79 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 028882 134 MSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNV 188 (202)
Q Consensus 134 v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~ 188 (202)
+.++-.+|.+.+.++++||...+-+.. .|+.=.+-++|.++|=++
T Consensus 128 vk~L~~~mv~Sv~elV~~g~E~~~l~r----------gl~~~e~~v~~~~~~y~~ 172 (174)
T PF04510_consen 128 VKELLPKMVKSVKELVERGMEVGFLRR----------GLRDFESFVSRQMNWYKT 172 (174)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHHHHHHHHHhhc
Confidence 556666799999999999988776664 455556678888887544
No 41
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=50.63 E-value=55 Score=19.85 Aligned_cols=42 Identities=10% Similarity=0.318 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~ 166 (202)
+.|..+...+.++++++.+==+.|-+-|+-|+.|.+..+.-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 568889999999999886655566677788888887665533
No 42
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.18 E-value=91 Score=25.95 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDK 161 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~k 161 (202)
..+..++..+.|+=+|+.+=-..+=+-||-+..+.+-
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~n 263 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDN 263 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677788888888888887666666777654444433
No 43
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=48.34 E-value=17 Score=30.44 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=27.2
Q ss_pred hhhhHHHHHhhhhcCCccchhHHHHHHHHHHH----HHHHHHhHHHHHHhccchh
Q 028882 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQV----RNVMIENIDKVLERGDRLE 156 (202)
Q Consensus 106 ~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v----~~im~~Ni~~~l~Rge~l~ 156 (202)
+=+|.+++.|+.|+ +.+.....+=++.+.+. |+..-++|++++- .++||
T Consensus 32 DNDPeMK~Vme~F~-rqTsQRF~EYdErm~~kRqkcKEqcDKeIQKIIl-KDKiE 84 (299)
T PF02009_consen 32 DNDPEMKSVMENFD-RQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIIL-KDKIE 84 (299)
T ss_pred CCcHHHHHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHhccccceeec-ccchh
Confidence 33789999999994 33333444444444333 3444446666665 33444
No 44
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=47.89 E-value=26 Score=21.61 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEE--eCCEEEEEEEcC
Q 028882 23 TNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKR--TDGLTVLCMADD 69 (202)
Q Consensus 23 ~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~--~~~~~~~~vt~~ 69 (202)
.+|+.+...+-+++..+.+-+..++.+|.-.+-+. .+|-.|+|+...
T Consensus 9 ~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e 57 (60)
T PF03607_consen 9 RSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGRE 57 (60)
T ss_dssp SSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSS
T ss_pred cCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCC
Confidence 56888888888888866668899998886665443 478889888543
No 45
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=45.78 E-value=1.3e+02 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=23.9
Q ss_pred CchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHH
Q 028882 104 NDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENID 146 (202)
Q Consensus 104 ~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~ 146 (202)
+.+|...+.+..+.. ++ .++-++.+..+++.+.+.+..+++
T Consensus 104 N~~~h~gV~~t~~si-~~-an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 104 NDETHDGVVQLTYSL-RN-ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred cHHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456666666666655 21 345566666666666666655554
No 46
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=45.39 E-value=66 Score=22.92 Aligned_cols=27 Identities=11% Similarity=-0.056 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 028882 170 FRFRKQARRFRSTVWWRNVKLTYVLLADT 198 (202)
Q Consensus 170 ~~f~~~s~~l~r~~~w~~~k~~iii~~~~ 198 (202)
....+++++ ++-+|++|.++.+...|.
T Consensus 56 ~~~~~k~~~--~~~~i~kyg~~GL~lFVa 82 (121)
T PF06695_consen 56 EWLEKKAEK--KSKKIEKYGFWGLALFVA 82 (121)
T ss_pred HHHHHHHHH--HHHHHHHHhHHHHHHHHh
Confidence 334444444 677888888766655443
No 47
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=44.38 E-value=69 Score=19.18 Aligned_cols=44 Identities=11% Similarity=0.413 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (202)
+.+..+...+.+++++..+=-..+-+-++.|+.+.+..+.....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67888889999999987755555556778888888766654433
No 48
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=44.35 E-value=77 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=39.5
Q ss_pred HHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 028882 142 IENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLL 195 (202)
Q Consensus 142 ~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~ 195 (202)
.+.++|+|.-|..+.+|+.|...|=.+-+.-.+.-|+.=--...+-.|.|-.|+
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiA 59 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIA 59 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 356889999999999999999999877766555555544445566666666654
No 49
>PHA03011 hypothetical protein; Provisional
Probab=43.93 E-value=76 Score=21.97 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=40.0
Q ss_pred hhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhh
Q 028882 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANM 165 (202)
Q Consensus 106 ~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L 165 (202)
.....+.++.-+|| .-.|....+..++.+...+.++|.|.+.-=...+|.|.+.-.++
T Consensus 61 ai~e~ldeL~~qYN--~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 61 AIIEILDELIAQYN--ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 33556666777774 23366677888888888999999888876666666666554443
No 50
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=43.35 E-value=49 Score=20.68 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=28.4
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 028882 156 ELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLA 196 (202)
Q Consensus 156 ~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~ 196 (202)
+.+.+...++-.++..+-+.++|=.|+..++-.|...+.++
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~ 44 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGIL 44 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44555666666777778888888888888877776655443
No 51
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.10 E-value=1.8e+02 Score=23.18 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHHH---HHHHHHHHHhhHHHHhhhhhe
Q 028882 157 LLVDKTANMQGNTFRFRKQARR---FRSTVWWRNVKLTYVLLADTC 199 (202)
Q Consensus 157 ~L~~ks~~L~~~s~~f~~~s~~---l~r~~~w~~~k~~iii~~~~~ 199 (202)
.|..-=+.|-......-+..+- +.|+++-.++-+++||++.++
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~ 209 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVL 209 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444343333 344445555555555554444
No 52
>PHA01811 hypothetical protein
Probab=40.57 E-value=33 Score=21.60 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.2
Q ss_pred CCceEEeeCCEEEEEEEeC
Q 028882 41 DSHVSYSQDRYIFHVKRTD 59 (202)
Q Consensus 41 ~~k~~~~~~~~~fh~l~~~ 59 (202)
+.-.++...||.+||+.++
T Consensus 4 ddivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDD 22 (78)
T ss_pred ccEEEEEEeeEEEEEEcCc
Confidence 4556788899999998764
No 53
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=39.67 E-value=1.2e+02 Score=24.41 Aligned_cols=39 Identities=10% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 028882 158 LVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADT 198 (202)
Q Consensus 158 L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~ 198 (202)
++..+..|...+.....-+++ ... ||--.-+.+++++++
T Consensus 204 ~d~n~~~l~~~~~rl~~~~~~-~~~-~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 204 LDRNLSSLKRESKRLKEHSSK-SWG-CWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccc-HHHHHHHHHHHHHHH
Confidence 333344455555444444332 222 777775555554443
No 54
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=39.33 E-value=1.1e+02 Score=19.96 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=36.9
Q ss_pred ecCCCCCHHHHHHHHhccCCC-CCCCceEEeeCC-EEEEEEE--eCCEEEEEEEcCC
Q 028882 18 CSATATNASAIARQILDKIPG-NNDSHVSYSQDR-YIFHVKR--TDGLTVLCMADDT 70 (202)
Q Consensus 18 ~~~~~~~~~~~a~~vL~ki~~-~~~~k~~~~~~~-~~fh~l~--~~~~~~~~vt~~~ 70 (202)
.+....+|+.+...+-+++.. +..-+..++.+| ....-+. +++-.|+|.....
T Consensus 21 ~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~ 77 (80)
T cd01617 21 NRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREP 77 (80)
T ss_pred ChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCC
Confidence 444457799888888887774 456788888877 5554332 5888899886544
No 55
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.46 E-value=1.1e+02 Score=26.33 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=35.1
Q ss_pred eCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhc
Q 028882 48 QDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 48 ~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~ 92 (202)
...|.++-..++++.+++++..+.|.-.++.||..|.+-|..-|+
T Consensus 52 ~p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 52 TPHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred CCceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 334554445678888888888888888899999999998886665
No 56
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=38.10 E-value=85 Score=18.40 Aligned_cols=43 Identities=14% Similarity=0.395 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~ 167 (202)
+.+..+...+.+++++..+==..+-+-|+.|+.+.+..+....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~ 48 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999988764444444556777777776555443
No 57
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=37.35 E-value=49 Score=27.82 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 028882 124 ADRINRIKGEMSQVRNVM 141 (202)
Q Consensus 124 ~dkl~~~~~~v~~v~~im 141 (202)
++.|..++.+++.++.+|
T Consensus 229 e~eL~~iqaqL~tvks~m 246 (372)
T COG3524 229 EDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 378899999999999999
No 58
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=37.10 E-value=58 Score=19.84 Aligned_cols=39 Identities=13% Similarity=0.373 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhH
Q 028882 128 NRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNT 169 (202)
Q Consensus 128 ~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s 169 (202)
.+++.+.+..-+-+..=||.+ |.||++|+..-.+|..+|
T Consensus 13 ~qmq~kFq~mS~~I~~riDeM---~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 13 QQMQDKFQTMSDQILGRIDEM---SSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhc
Confidence 344444444444433333333 556666666666665554
No 59
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.24 E-value=1.8e+02 Score=21.58 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHH
Q 028882 78 AFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMI 142 (202)
Q Consensus 78 ~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~ 142 (202)
.-++.|.++|......-... +. .-...|+.++.. +.|...++.++.+|+.+++.-|.
T Consensus 50 a~~q~I~~~f~~~t~~LRqq-----L~-aKr~ELnALl~~--~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQ-----LV-SKRYEYNALLTA--NPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34677777777554321110 11 113455555432 23455788899999888887654
No 60
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.03 E-value=1.2e+02 Score=19.53 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR 177 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~ 177 (202)
|.|.-++-++++.|+--..=-+.+-+-.+..+.|+...+.|+..-...+..-+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888877653322223333344455666666666665555444433
No 61
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=35.31 E-value=40 Score=28.01 Aligned_cols=25 Identities=4% Similarity=0.402 Sum_probs=20.5
Q ss_pred eCCEEEEEEEeCCEEEEEEEcCCCC
Q 028882 48 QDRYIFHVKRTDGLTVLCMADDTAG 72 (202)
Q Consensus 48 ~~~~~fh~l~~~~~~~~~vt~~~~~ 72 (202)
.+|++|-|-..+++.++|+|+-.+-
T Consensus 238 i~g~ly~y~~~~~v~i~c~chg~~~ 262 (284)
T PF07897_consen 238 IEGFLYKYGKGEEVRIVCVCHGSFL 262 (284)
T ss_pred eeEEEEEecCCCeEEEEEEecCCCC
Confidence 4578888866789999999998775
No 62
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=34.37 E-value=56 Score=21.44 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=19.9
Q ss_pred cchhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028882 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (202)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~ 183 (202)
+|||.+++|-|. .+|.-||+.-+++=|-.
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 356666666666 66777888888777654
No 63
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.12 E-value=20 Score=28.02 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=16.8
Q ss_pred HHHHHHhhHHHHhhhhheee
Q 028882 182 TVWWRNVKLTYVLLADTCLY 201 (202)
Q Consensus 182 ~~~w~~~k~~iii~~~~~~~ 201 (202)
+-+|.+|.||||-.++|++|
T Consensus 239 RSF~AKYWMYiiPlglVVl~ 258 (279)
T KOG4827|consen 239 RSFLAKYWMYIIPLGLVVLF 258 (279)
T ss_pred hhHHHHHHHhhccchhhhhh
Confidence 45789999999998888876
No 64
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=34.07 E-value=1.6e+02 Score=23.82 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=35.1
Q ss_pred ceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCEEEEE
Q 028882 2 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHV 55 (202)
Q Consensus 2 ~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~ 55 (202)
+|-|+.|+.-...+......-..+-+++..+|..-. .+.+..++-|+|.|.+
T Consensus 30 ~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eS--eN~Kyayeg~nYHwvI 81 (249)
T PF11675_consen 30 PIAYISVAQPTATFEHDEKKHTKYLDIINDILRDES--ENIKYAYEGGNYHWVI 81 (249)
T ss_pred ceeEEeccCceEEEeecCccchhHHHHHHHHHhccc--cccceeeeCCceEEEE
Confidence 477777776665555444433557889999998754 3577777777776643
No 65
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=33.89 E-value=1.7e+02 Score=20.77 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=44.6
Q ss_pred HhccCCC--CCCCceEEeeCCEEEEEE-EeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhchhhhc--ccccCCCch
Q 028882 32 ILDKIPG--NNDSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS--AQAYGMNDE 106 (202)
Q Consensus 32 vL~ki~~--~~~~k~~~~~~~~~fh~l-~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~~~~--~~~~~~~~~ 106 (202)
++.++.| .+..+..+..+++..|+. .-.|.-|+.++.+. +...+++ |..+...|. +|...... ..-+-.+..
T Consensus 46 I~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~-t~na~~q-l~kiY~lYs-dYV~knPfys~EMPI~c~l 122 (134)
T COG5122 46 ILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKR-TVNALFQ-LQKIYSLYS-DYVTKNPFYSPEMPIQCSL 122 (134)
T ss_pred hhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEEecCC-chhHHHH-HHHHHHHHH-HHhhcCCCCCcccceehhh
Confidence 3444432 467888888999887755 45899999998332 2233444 444554443 44322211 000111346
Q ss_pred hhhHHHHHhh
Q 028882 107 FSRVLSQQME 116 (202)
Q Consensus 107 f~~~l~~~~~ 116 (202)
|++.+++..+
T Consensus 123 Fde~lkrm~e 132 (134)
T COG5122 123 FDEHLKRMFE 132 (134)
T ss_pred hhHHHHHHhc
Confidence 7777766544
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.31 E-value=1.8e+02 Score=23.53 Aligned_cols=54 Identities=4% Similarity=0.148 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHH
Q 028882 127 INRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180 (202)
Q Consensus 127 l~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~ 180 (202)
+..+..+++..+.-...+..+.-......+....++++|.............+-
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~ 107 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444434443333344444455555555555555544444443
No 67
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=33.27 E-value=2.3e+02 Score=22.35 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCcc----------chhHHHHHHHHHHHHHHHHHh
Q 028882 75 IPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN----------ADRINRIKGEMSQVRNVMIEN 144 (202)
Q Consensus 75 ~a~~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~----------~dkl~~~~~~v~~v~~im~~N 144 (202)
.+..||++|.+....-......-. .-+..|...|.++--.+..++. -.+.+..-++|++-+..|.+|
T Consensus 13 ~t~~~ik~liK~c~~li~A~k~~~---~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~ 89 (207)
T cd07634 13 RTNKFIKELIKDGSLLIGALRNLS---MAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888877664333211100 1124677777777666654441 146677778888888888888
Q ss_pred HHHHH
Q 028882 145 IDKVL 149 (202)
Q Consensus 145 i~~~l 149 (202)
++..+
T Consensus 90 ~~~~l 94 (207)
T cd07634 90 ANDVL 94 (207)
T ss_pred HHHHH
Confidence 87666
No 68
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=32.73 E-value=1.9e+02 Score=20.80 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHH
Q 028882 129 RIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFR 171 (202)
Q Consensus 129 ~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~ 171 (202)
++.++|.++.+-+.+-..++-+=-+++++.+.+++.|..-|..
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAK 45 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAK 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 4455555555544333322222224445555555555544433
No 69
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=32.14 E-value=68 Score=20.61 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=19.9
Q ss_pred cchhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028882 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (202)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~ 183 (202)
+|||.+++|-|. .+|.-|++.-+++=|-.
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 356666666666 56777888888877654
No 70
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.77 E-value=4e+02 Score=25.56 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028882 127 INRIKGEMSQVRNVMI 142 (202)
Q Consensus 127 l~~~~~~v~~v~~im~ 142 (202)
+..+++.++++.....
T Consensus 359 v~~ik~~l~~~~~~i~ 374 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIR 374 (806)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 71
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.69 E-value=1.2e+02 Score=21.65 Aligned_cols=19 Identities=0% Similarity=0.340 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIE 143 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ 143 (202)
..+..++++|.-.|.+-.+
T Consensus 36 e~~e~L~~kV~aLKsLs~d 54 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLD 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788888887777554
No 72
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=2.2e+02 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhcc
Q 028882 131 KGEMSQVRNVMIENIDKVLERGD 153 (202)
Q Consensus 131 ~~~v~~v~~im~~Ni~~~l~Rge 153 (202)
...++-..+.|.++||..|+..|
T Consensus 132 se~Mdm~~Emm~daIDdal~~~e 154 (224)
T KOG3230|consen 132 SEIMDMKEEMMDDAIDDALGDDE 154 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 34567788899999999996443
No 73
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=30.50 E-value=1.1e+02 Score=23.75 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=39.2
Q ss_pred cCCCCcccHHHHHHHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHH
Q 028882 68 DDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENID 146 (202)
Q Consensus 68 ~~~~~~~~a~~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~ 146 (202)
+-+|.+..--..|.|.++....... +.+..+-..-++.....| .+|.= +.+-.-+.+..+.-.-+.+.++
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~--------~HLT~KS~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~Ln 178 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVE--------PHLTPKSHGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGLN 178 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHT--------TTS-HHHHHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH--------HhCChhhHHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3444554445555555555543322 223333345556666666 34432 4444444556677777788999
Q ss_pred HHHHhcc
Q 028882 147 KVLERGD 153 (202)
Q Consensus 147 ~~l~Rge 153 (202)
++|++|.
T Consensus 179 klld~g~ 185 (186)
T PF05527_consen 179 KLLDEGS 185 (186)
T ss_dssp HHHHTT-
T ss_pred HHHhCCC
Confidence 9999885
No 74
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=30.35 E-value=54 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=23.3
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhee
Q 028882 156 ELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCL 200 (202)
Q Consensus 156 ~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~ 200 (202)
|+..+|+.+---.++.|-.+-+.-.|-+|-|.++.-++-.++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (379)
T PRK12430 104 DEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRIIPLVFLLL 148 (379)
T ss_pred hHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444556665555555566665555555553444433
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.96 E-value=3.9e+02 Score=25.40 Aligned_cols=79 Identities=10% Similarity=0.154 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHH---HHHHHHhHHHH
Q 028882 72 GRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQV---RNVMIENIDKV 148 (202)
Q Consensus 72 ~~~~a~~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v---~~im~~Ni~~~ 148 (202)
+...++.||.+-.+.|.+.|-.....+. ..+..-++.+...+. ..-+++.+++++.+++ .+-+.+.++.+
T Consensus 533 ~~~E~l~lL~~a~~vlreeYi~~~~~ar-----~ei~~rv~~Lk~~~e--~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEYIEKQDLAR-----EEIQRRVKLLKQQKE--QQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778888877777766632211110 122222222333331 1113344444444333 34446666666
Q ss_pred HHhccchhH
Q 028882 149 LERGDRLEL 157 (202)
Q Consensus 149 l~Rge~l~~ 157 (202)
.+|.+.|..
T Consensus 606 ~d~Qe~L~~ 614 (717)
T PF10168_consen 606 KDKQEKLMK 614 (717)
T ss_pred HHHHHHHHH
Confidence 666655543
No 76
>PTZ00046 rifin; Provisional
Probab=29.88 E-value=1.3e+02 Score=25.95 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=28.9
Q ss_pred hhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHH----hHHHHHHh
Q 028882 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIE----NIDKVLER 151 (202)
Q Consensus 106 ~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~----Ni~~~l~R 151 (202)
+=+|.+++.|+.|+ +.+.....+=.+.+.+-++...| +|++++-.
T Consensus 52 DNDPeMK~Vme~F~-rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILK 100 (358)
T PTZ00046 52 DNDPEMKSVMENFD-RQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILK 100 (358)
T ss_pred CCcHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 44899999999994 44444555555555555555444 77777753
No 77
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=29.44 E-value=2.1e+02 Score=20.35 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=51.9
Q ss_pred EEEEEEe-CCeEEEeecCCC-CC------HH---HHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCC
Q 028882 4 LFSLVAR-GSVVLAECSATA-TN------AS---AIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAG 72 (202)
Q Consensus 4 ~Ya~Iar-~~~iLae~~~~~-~~------~~---~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~ 72 (202)
.-..|+. ++.+++.....+ ++ |- ..|.+-..|+.-......+..+++|.........+++..+++++..
T Consensus 18 ~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~aN 97 (119)
T PF08923_consen 18 QAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNAN 97 (119)
T ss_dssp EEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS-
T ss_pred EEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCCC
Confidence 4455665 578888755422 21 11 3555567787643344455568898865567889999999999998
Q ss_pred cccHHHHHHHHHHHH
Q 028882 73 RRIPFAFLEDIHQRF 87 (202)
Q Consensus 73 ~~~a~~fL~~i~~~f 87 (202)
.-....+-+++..-+
T Consensus 98 ~G~il~l~~~L~~~l 112 (119)
T PF08923_consen 98 TGLILSLEEELAPIL 112 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHH
Confidence 777666666666443
No 78
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=28.82 E-value=1.1e+02 Score=16.88 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHhccc
Q 028882 136 QVRNVMIENIDKVLERGDR 154 (202)
Q Consensus 136 ~v~~im~~Ni~~~l~Rge~ 154 (202)
--++-+.+.||..|++|++
T Consensus 9 ~~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 9 FRKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 3455667889999998875
No 79
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.33 E-value=2.4e+02 Score=23.28 Aligned_cols=47 Identities=11% Similarity=0.324 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFR 171 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~ 171 (202)
+.|.++.+-+..+|+...+-=..+=.-.++|+.|.++++++...=..
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~ 264 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDK 264 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHH
Confidence 45555555555566555444334444556788899999987754433
No 80
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=28.27 E-value=87 Score=17.83 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHhccchhHHHhhhhh
Q 028882 138 RNVMIENIDKVLERGDRLELLVDKTAN 164 (202)
Q Consensus 138 ~~im~~Ni~~~l~Rge~l~~L~~ks~~ 164 (202)
.+.+.+|-..+|...+-++.|+++-+.
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIEE 35 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 456778888888888888888876553
No 81
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.25 E-value=2.5e+02 Score=25.77 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=45.8
Q ss_pred hhhhHHHHHhhhhc----CCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHH
Q 028882 106 EFSRVLSQQMEYYS----DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQ 175 (202)
Q Consensus 106 ~f~~~l~~~~~~y~----~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~ 175 (202)
++...+++.-.+|+ +=|+.+++...++++++++.-=.+|...+.++-+.++.|....+........|++.
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 33556889999999999888544566677788888887777766655555554433
No 82
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=28.07 E-value=1.2e+02 Score=21.12 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHhHHHHHHhccchhHHHhh--hhhhhhhHHHHHHHHHHHHH
Q 028882 141 MIENIDKVLERGDRLELLVDK--TANMQGNTFRFRKQARRFRS 181 (202)
Q Consensus 141 m~~Ni~~~l~Rge~l~~L~~k--s~~L~~~s~~f~~~s~~l~r 181 (202)
+.+.+..+|.++..|+.+..- +++|.......-..++.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 345677788888888888886 77788888888888887776
No 83
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.34 E-value=2.8e+02 Score=21.02 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLE 150 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~ 150 (202)
....+++.+++.+++-+.+-|+++-.
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877543
No 84
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=27.29 E-value=2.1e+02 Score=19.72 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=38.0
Q ss_pred HHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 82 DIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 82 ~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
+.+++|..-+.+... ........+.+...+|+ -.+.+..-..++..-++-+.+|+..++.+
T Consensus 2 ea~~ef~~I~~n~~l------t~~e~~~~l~~Wa~~~~---v~~~~~~f~~~~~~~~~~~~~~~~~vi~~ 62 (113)
T PF02520_consen 2 EARKEFFQIFQNPNL------TKAEIEEQLDEWAEKYG---VQDQYNEFKAQVQAQKEEVRKNVTAVISN 62 (113)
T ss_pred hHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655443111 11345666777777773 44777777777877777777887777754
No 85
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=26.50 E-value=1e+02 Score=19.80 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHH
Q 028882 136 QVRNVMIENIDK 147 (202)
Q Consensus 136 ~v~~im~~Ni~~ 147 (202)
+.+.||.+||+.
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 455566666654
No 86
>PHA02845 hypothetical protein; Provisional
Probab=26.45 E-value=60 Score=21.96 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=13.4
Q ss_pred HHHHHHHHhhHHHHhhhh
Q 028882 180 RSTVWWRNVKLTYVLLAD 197 (202)
Q Consensus 180 ~r~~~w~~~k~~iii~~~ 197 (202)
=-+++||||++.++++.+
T Consensus 59 ~iRlv~RNy~~llil~~~ 76 (91)
T PHA02845 59 MIRILKRNYFALFIIFLF 76 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346889999997776543
No 87
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.27 E-value=38 Score=28.07 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=19.7
Q ss_pred hHHHHHhhhhcCCc----cchhHHHHHHHHHHHHHHHHHhHHH
Q 028882 109 RVLSQQMEYYSDDP----NADRINRIKGEMSQVRNVMIENIDK 147 (202)
Q Consensus 109 ~~l~~~~~~y~~~~----~~dkl~~~~~~v~~v~~im~~Ni~~ 147 (202)
..+.+.|++.-... ..+..+++++++-|.-+-|..+=..
T Consensus 83 ~e~~e~~~k~~~K~k~~~d~e~~~klEKel~e~~~~~fg~e~~ 125 (295)
T TIGR01478 83 EQLQELVEKNRTKSTGGNGAEPMSTIEKELLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhcCCcccccCCcchhhHHHHHHHHHHHHHhCCccc
Confidence 45555555442211 1245566666666666666555444
No 88
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=26.22 E-value=41 Score=22.69 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHHHhhhhhee
Q 028882 181 STVWWRNVKLTYVLLADTCL 200 (202)
Q Consensus 181 r~~~w~~~k~~iii~~~~~~ 200 (202)
-++.||||+..++++++..+
T Consensus 59 ~Rlv~RN~~ill~l~l~~~i 78 (87)
T PF05803_consen 59 IRLVKRNYKILLILALSYAI 78 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 35789999998888776543
No 89
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=25.17 E-value=3.5e+02 Score=21.83 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRF 172 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f 172 (202)
.++..+.+.+.--+++ .+=-|++...--..++|.+++......|+.|
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~F 117 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKF 117 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 3333444322223444444444444444444
No 90
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=24.88 E-value=2.2e+02 Score=18.96 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=3.3
Q ss_pred HHHHHHHHHHhhHHHHhhhhheee
Q 028882 178 RFRSTVWWRNVKLTYVLLADTCLY 201 (202)
Q Consensus 178 ~l~r~~~w~~~k~~iii~~~~~~~ 201 (202)
+.++..-|-+.+..+++++++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~ 117 (124)
T PF00482_consen 94 RIKRAAELIEPLILIIVGALVLFF 117 (124)
T ss_dssp HHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666665555443
No 91
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=24.78 E-value=4.3e+02 Score=24.06 Aligned_cols=60 Identities=7% Similarity=0.183 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHH-HHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENID-KVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~-~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~ 184 (202)
++|.......++-.+...++++ ++=+++++-..+.++++.++..|..|..-..+||..+-
T Consensus 41 ~sl~~s~~~~~~~N~~~~~~l~~k~~~~p~k~~~~~~~A~~vk~~S~~l~~yl~~LK~~i~ 101 (523)
T TIGR03517 41 ESLEAAVGNSEKYNNALLAELDKAVAKAPAKDKQWQESAQKVRTKSDSLYDYMNDLKEEII 101 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555 45566778888888888888888888888888877664
No 92
>PLN03223 Polycystin cation channel protein; Provisional
Probab=24.60 E-value=1.4e+02 Score=30.56 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~ 167 (202)
|.|.+.++.+-+++.-+.|+=-++++|+++|.++++|-.+|..
T Consensus 1581 ~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1581 DQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5677777788888888889999999999999999988776653
No 93
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=24.51 E-value=2.4e+02 Score=19.30 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=38.8
Q ss_pred chhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhh
Q 028882 105 DEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANM 165 (202)
Q Consensus 105 ~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L 165 (202)
..|++.=+++ ..| |.+=....+..+...+.+...-|+.+.+.|||-+..-.-.++=+
T Consensus 23 G~~~~~R~~l-~~Y---P~dl~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~fv 79 (100)
T PF13228_consen 23 GEFTALRERL-AYY---PEDLRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEFV 79 (100)
T ss_pred chHHHHHHHH-HHC---hHHHHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3554443334 666 65555566777777777777789999999999888655554433
No 94
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.41 E-value=1.4e+02 Score=20.40 Aligned_cols=14 Identities=0% Similarity=0.411 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVR 138 (202)
Q Consensus 125 dkl~~~~~~v~~v~ 138 (202)
+|...+|.+|++++
T Consensus 19 ~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 19 TKVDALQTQLNGLE 32 (94)
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555555554
No 95
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.38 E-value=2.2e+02 Score=19.71 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHH
Q 028882 130 IKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTF 170 (202)
Q Consensus 130 ~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~ 170 (202)
++..++++...+.++++.+ .+.++.|..+-+.|...-.
T Consensus 61 v~~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQLK 98 (110)
T ss_pred heecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444566666665555555 4445555555555444333
No 96
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.27 E-value=1.6e+02 Score=24.57 Aligned_cols=38 Identities=5% Similarity=0.205 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKT 162 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks 162 (202)
..+.++-+-|.|+.+|+.+==..|++-|--+|.+.-.-
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNv 255 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNV 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecch
Confidence 55788888999999999998888999998777755433
No 97
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.20 E-value=4.4e+02 Score=22.26 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=33.7
Q ss_pred hhhHHHHHhhhhcCCccchhHHHHHHHHHH---HHHHHHHhHHHHHHhccchhHHHh----hhhhhhhhHHH
Q 028882 107 FSRVLSQQMEYYSDDPNADRINRIKGEMSQ---VRNVMIENIDKVLERGDRLELLVD----KTANMQGNTFR 171 (202)
Q Consensus 107 f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~---v~~im~~Ni~~~l~Rge~l~~L~~----ks~~L~~~s~~ 171 (202)
|....+.+...+|+ .-|.+.++++.|-| .+++|.+ +|++-.++||.|.+ -|++++..-..
T Consensus 216 ~E~En~~l~~~~n~--~~devrqie~~lvEI~~Lq~ifse---hvl~Q~~~Id~I~d~~~~~teNIk~gNe~ 282 (316)
T KOG3894|consen 216 LETENQRLLNELNE--LLDEVRQIEKRLVEISALQDIFSE---HVLQQDQNIDLIHDLQSGATENIKDGNEE 282 (316)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence 44555556666642 22555555555444 4555544 57888888888877 34444444333
No 98
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=24.17 E-value=2.8e+02 Score=19.91 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=42.5
Q ss_pred EEEeCCeEEEeecCCCCCHH----------HHHHHHhccCCCCCCCceEEe-eCCEEEEEEEeCCEEEEEEEcCCCCccc
Q 028882 7 LVARGSVVLAECSATATNAS----------AIARQILDKIPGNNDSHVSYS-QDRYIFHVKRTDGLTVLCMADDTAGRRI 75 (202)
Q Consensus 7 ~Iar~~~iLae~~~~~~~~~----------~~a~~vL~ki~~~~~~k~~~~-~~~~~fh~l~~~~~~~~~vt~~~~~~~~ 75 (202)
.|..++.|.+.....+.+-+ ..+..+.+++....-....++ ..|+.+-+-..++.+++++++++..--.
T Consensus 24 Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~~l~~g~leqi~I~g~~g~i~l~~~g~~~il~~~a~~~~nLGl 103 (119)
T COG2018 24 VVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAADELGGGELEQIMIEGKKGKILLYDAGDDAILVVLADEGTNLGL 103 (119)
T ss_pred EEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHHHhCCCCceEEEEeccccEEEEEEcCCceEEEEEcCCCCcchh
Confidence 45557899988877665532 233555566663222323333 2367776666789999999998877443
No 99
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=3e+02 Score=20.16 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=42.9
Q ss_pred HHHHhccCCCC--CCCceEEeeCCEEEEEE-EeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhh
Q 028882 29 ARQILDKIPGN--NDSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY 91 (202)
Q Consensus 29 a~~vL~ki~~~--~~~k~~~~~~~~~fh~l-~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~ 91 (202)
.+.+..|+.+. .++-.++..+.|..||. +..|+=++..||+.... .-..|..|.+...-.|
T Consensus 45 lkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~~--ir~vLq~IYs~lyVE~ 108 (140)
T KOG3368|consen 45 LKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAGS--IRDVLQYIYSHLYVEY 108 (140)
T ss_pred HHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCccc--HHHHHHHHHHHHHHHH
Confidence 46667788753 35567778889999975 46999999999988763 3456777776433344
No 100
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.61 E-value=4.9e+02 Score=22.57 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 110 VLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 110 ~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
.+.++...| ++...++..++.++++++.-+.+.+.++...
T Consensus 269 ~l~~l~~~y--~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 269 KLAELSQRL--GPNHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556 3556788889999999998888877776654
No 101
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.25 E-value=1.8e+02 Score=19.47 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=18.4
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028882 156 ELLVDKTANMQGNTFRFRKQARRFRSTV 183 (202)
Q Consensus 156 ~~L~~ks~~L~~~s~~f~~~s~~l~r~~ 183 (202)
+.|++|++.|...-..+-...+..++.+
T Consensus 43 D~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 43 DHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766666666665544
No 102
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=21.75 E-value=3.4e+02 Score=20.11 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=10.7
Q ss_pred chhhhHHHHHhhhhc
Q 028882 105 DEFSRVLSQQMEYYS 119 (202)
Q Consensus 105 ~~f~~~l~~~~~~y~ 119 (202)
..|...+.....++.
T Consensus 49 ~~fk~elE~~~~~w~ 63 (144)
T PF11657_consen 49 DQFKEELEEIASRWG 63 (144)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777777774
No 103
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=21.15 E-value=3.6e+02 Score=20.18 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=20.8
Q ss_pred CchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHH
Q 028882 104 NDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVM 141 (202)
Q Consensus 104 ~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im 141 (202)
..+|...++++.+..+ +.+..+-.-+.|.+..+
T Consensus 81 ~~~F~~~l~~i~~~H~-----~vv~~lA~G~~E~~~~~ 113 (164)
T PF10436_consen 81 NEKFTELLERILDRHS-----DVVPTLAQGVLELKKYL 113 (164)
T ss_dssp HHHHHHHHHHHHHHTT-----THHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHh
Confidence 4578888888887774 34555555555555554
No 104
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.64 E-value=1.9e+02 Score=18.65 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=20.1
Q ss_pred cchhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028882 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (202)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~ 183 (202)
+|||.+++|-|. .+|.-+++.-+++=|-.
T Consensus 19 ~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 19 KRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 456666666666 56777888888877654
No 105
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.01 E-value=31 Score=20.33 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=9.9
Q ss_pred HHhhHHHHhhhhheee
Q 028882 186 RNVKLTYVLLADTCLY 201 (202)
Q Consensus 186 ~~~k~~iii~~~~~~~ 201 (202)
|+|.|.+..++.+.+|
T Consensus 3 rky~wlvvfav~~flf 18 (53)
T PF10831_consen 3 RKYWWLVVFAVFVFLF 18 (53)
T ss_pred ceehhHHHHHHHHHHH
Confidence 4555666666666655
Done!