Query 028882
Match_columns 202
No_of_seqs 117 out of 931
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 3.3E-61 1.1E-65 373.0 5.3 188 1-189 2-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 8.1E-52 2.8E-56 322.6 11.9 184 3-187 3-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 1.4E-39 4.6E-44 253.0 7.7 175 1-181 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 4.7E-34 1.6E-38 216.8 15.0 119 1-120 54-172 (173)
5 2vx8_A Nucleoporin-like protei 100.0 5.7E-30 1.9E-34 193.8 12.7 120 1-121 44-163 (169)
6 3hd7_A Vesicle-associated memb 100.0 7.4E-30 2.5E-34 174.0 8.9 79 123-201 3-81 (91)
7 2kog_A Vesicle-associated memb 99.9 4.5E-29 1.6E-33 177.7 1.5 81 121-201 29-109 (119)
8 2nps_A VAMP-4, vesicle-associa 99.9 1.5E-26 5E-31 151.9 5.2 70 122-191 5-74 (74)
9 1sfc_A VAMP 2, protein (synapt 99.9 7.9E-26 2.7E-30 155.2 8.6 72 120-191 25-96 (96)
10 1l4a_A Synaptobrevin; snare, s 99.9 3E-26 1E-30 152.6 4.0 71 120-190 10-80 (80)
11 3bw6_A Synaptobrevin homolog Y 99.9 7.6E-24 2.6E-28 156.7 13.3 121 1-126 5-144 (144)
12 1n7s_A Vesicle-associated memb 99.9 8.6E-23 2.9E-27 129.9 7.5 63 122-184 1-63 (63)
13 3b5n_A Synaptobrevin homolog 1 99.9 1.9E-22 6.5E-27 127.4 7.3 60 125-184 2-61 (61)
14 1gl2_A Endobrevin; membrane pr 99.8 1.7E-20 5.7E-25 119.9 5.9 60 122-181 6-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 4.9E-18 1.7E-22 107.0 6.5 59 125-183 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.3 3.4E-10 1.2E-14 63.7 -9.3 32 122-153 6-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.3 4.4E-07 1.5E-11 74.6 3.9 51 105-155 245-310 (310)
18 2fh5_A Signal recognition part 97.9 4.4E-05 1.5E-09 57.7 7.4 88 4-94 13-106 (185)
19 3hd7_B Syntaxin-1A; membrane p 96.6 0.024 8.4E-07 39.0 9.8 53 108-166 10-62 (109)
20 2fz0_A R-snare NYV1P, V-snare 95.0 0.024 8.3E-07 40.1 3.8 61 25-85 46-114 (149)
21 2j3w_A Sedlin, trafficking pro 94.5 0.73 2.5E-05 32.9 11.0 117 1-119 3-140 (142)
22 2j3t_C Trafficking protein par 94.0 1.1 3.8E-05 32.1 11.1 115 1-118 1-137 (145)
23 1w63_Q Adapter-related protein 91.1 3.3 0.00011 30.0 11.2 50 43-92 47-96 (158)
24 2vgl_S AP-2 complex subunit si 89.7 2.9 9.9E-05 29.6 9.0 50 43-92 47-96 (142)
25 3tjz_C Coatomer subunit zeta-1 87.0 6.8 0.00023 28.2 11.6 87 3-91 13-105 (153)
26 2j3t_D Trafficking protein par 84.7 11 0.00037 29.0 9.9 88 31-120 120-211 (219)
27 1w63_M Adaptor-related protein 83.4 2.9 9.8E-05 35.3 6.9 91 1-92 1-96 (423)
28 3hd7_A Vesicle-associated memb 82.3 8.1 0.00028 25.2 7.8 52 125-176 12-63 (91)
29 1jth_B Syntaxin 1A; coiled-coi 82.1 7.3 0.00025 24.5 7.0 42 125-166 10-51 (77)
30 3cue_A Transport protein parti 81.8 9.9 0.00034 29.2 8.6 77 42-118 118-218 (219)
31 3cue_C Transport protein parti 81.6 5.1 0.00018 29.1 6.8 86 30-118 52-156 (159)
32 2vgl_M AP-2 complex subunit MU 80.2 25 0.00087 29.5 11.7 50 43-92 45-94 (435)
33 2nps_B Syntaxin 13, vesicle-as 78.7 7.1 0.00024 24.1 5.9 43 125-167 6-48 (71)
34 1n7s_A Vesicle-associated memb 77.7 9.2 0.00031 23.0 7.8 59 132-190 4-62 (63)
35 1sfc_A VAMP 2, protein (synapt 75.5 15 0.0005 24.2 8.3 61 131-191 29-89 (96)
36 3b5n_A Synaptobrevin homolog 1 75.0 11 0.00037 22.5 7.6 58 133-190 3-60 (61)
37 1txp_A HnRNP C, heterogeneous 73.4 2.8 9.6E-05 20.9 2.2 25 128-156 2-26 (28)
38 1utg_A Uteroglobin; steroid bi 70.6 8.1 0.00028 23.9 4.5 43 109-151 19-62 (70)
39 1t3j_A Mitofusin 1; coiled coi 69.0 22 0.00075 23.5 7.6 47 126-172 37-83 (96)
40 1ccd_A Clara cell 17 KD protei 61.6 9.3 0.00032 24.2 3.6 44 108-151 20-64 (77)
41 1j3w_A Giding PROTEIN-MGLB; gl 56.3 54 0.0018 23.6 10.9 83 5-88 31-130 (163)
42 3b5n_B Protein SSO1; snare com 55.1 33 0.0011 20.8 7.8 44 125-168 10-53 (69)
43 3h3g_B Parathyroid hormone-rel 53.4 9.4 0.00032 18.4 1.9 12 177-188 5-16 (24)
44 1zkr_A Major allergen I polype 52.2 36 0.0012 24.4 5.7 43 109-151 20-64 (153)
45 4a4y_A Protein MXIG; protein b 49.3 40 0.0014 22.4 5.2 42 3-57 86-127 (146)
46 3hd7_B Syntaxin-1A; membrane p 49.3 56 0.0019 21.8 9.5 10 169-178 75-84 (109)
47 1l4a_C S-SNAP25 fusion protein 47.7 40 0.0014 21.5 4.9 58 110-168 13-70 (83)
48 3lcn_C MRNA transport factor G 46.4 27 0.00093 17.3 3.2 22 123-144 4-25 (29)
49 2nps_A VAMP-4, vesicle-associa 45.5 51 0.0018 20.3 5.5 17 157-173 47-63 (74)
50 1nhl_A Synaptosomal-associated 45.0 43 0.0015 19.3 5.6 41 129-169 4-44 (54)
51 2ygg_A Sodium/hydrogen exchang 44.6 26 0.00088 21.7 3.4 22 131-152 6-27 (70)
52 1gl2_B Syntaxin 7; membrane pr 44.5 49 0.0017 19.8 7.1 44 125-168 9-52 (65)
53 1n7s_B Syntaxin 1A; neuronal s 44.2 51 0.0017 19.9 7.1 43 125-167 12-54 (68)
54 1urq_A M-tomosyn isoform; tran 42.7 53 0.0018 19.7 5.8 46 128-173 14-59 (63)
55 1dn1_B Syntaxin 1A, syntaxin b 42.5 23 0.00079 27.7 3.8 42 125-166 200-241 (267)
56 1gl2_A Endobrevin; membrane pr 41.9 55 0.0019 19.6 6.0 53 131-183 8-60 (65)
57 2oxj_A Hybrid alpha/beta pepti 40.8 39 0.0013 17.6 3.7 27 154-180 2-28 (34)
58 1utr_A Uteroglobin; clara cell 40.6 14 0.00048 24.3 1.9 43 109-151 40-83 (96)
59 3c3f_A Alpha/beta peptide with 37.9 44 0.0015 17.4 3.7 26 154-179 2-27 (34)
60 1kd8_B GABH BLL, GCN4 acid bas 37.2 48 0.0016 17.5 3.7 27 154-180 2-28 (36)
61 2cly_A ATP synthase B chain, m 36.1 1.4E+02 0.0048 22.6 7.5 39 127-165 86-124 (214)
62 1n7s_C SNAP-25A; neuronal snar 35.8 81 0.0028 19.8 6.9 47 123-169 21-67 (79)
63 1l4a_A Synaptobrevin; snare, s 34.4 20 0.00069 22.6 1.9 46 126-174 23-71 (80)
64 2pjw_V Vacuolar protein sortin 33.5 98 0.0034 20.1 6.1 40 125-164 33-72 (91)
65 2kog_A Vesicle-associated memb 33.3 7 0.00024 27.0 -0.6 52 125-176 40-91 (119)
66 1sfc_B Protein (syntaxin 1A), 32.6 93 0.0032 19.5 7.6 42 125-166 21-62 (83)
67 3b5n_C Protein transport prote 32.1 89 0.003 19.1 7.6 57 125-181 12-68 (70)
68 2bni_A General control protein 31.5 60 0.002 16.9 3.5 20 155-174 3-22 (34)
69 3t97_C Nuclear pore glycoprote 30.0 46 0.0016 20.1 2.9 25 148-172 7-31 (64)
70 1ter_A Tertiapin; toxin; NMR { 27.7 27 0.00091 16.5 1.1 8 182-189 12-19 (26)
71 1rh5_B Preprotein translocase 25.9 14 0.00047 23.2 -0.1 43 154-196 4-46 (74)
72 3leq_A Uncharacterized protein 22.8 1.8E+02 0.0062 19.6 7.5 75 3-77 19-106 (126)
73 1f5n_A Interferon-induced guan 22.4 2.3E+02 0.008 24.8 7.1 18 105-122 434-451 (592)
74 2wwb_B SEC61gamma, protein tra 22.1 9.2 0.00032 23.6 -1.4 39 155-193 4-42 (68)
75 1mg4_A Doublecortin, doublecor 21.2 1.5E+02 0.0052 19.9 4.5 51 18-68 36-93 (113)
76 2ww9_B Protein transport prote 21.0 22 0.00075 22.7 0.1 32 163-194 26-57 (80)
77 4ehp_B Catenin alpha-1; adhere 21.0 2E+02 0.0068 19.4 5.3 53 126-182 58-110 (111)
78 1gl2_C VTI1B, vesicle transpor 20.6 1.5E+02 0.005 17.7 5.9 45 124-168 8-52 (65)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=3.3e-61 Score=373.01 Aligned_cols=188 Identities=37% Similarity=0.677 Sum_probs=150.9
Q ss_pred CceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHH
Q 028882 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (202)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL 80 (202)
|||+|||||||++|||||+..+|||..+++.+|+++| ++++|.++++|+|.|||+.++|++|+|+||.+||+++||.||
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip-~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCC-SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCC-CCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHh
Q 028882 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVD 160 (202)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ 160 (202)
++|.++|...|+....++.++++..+|.+.|+++|++|++.+..|++.+++.+|+||++||.+||+++|+|||+||.|++
T Consensus 81 ~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ 160 (189)
T 4b93_A 81 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLID 160 (189)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEE
T ss_pred HHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999987777788888889999999999999766667999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 028882 161 KTANMQGNTFRFRKQARRFRSTVWWRNVK 189 (202)
Q Consensus 161 ks~~L~~~s~~f~~~s~~l~r~~~w~~~k 189 (202)
||++|+.+|..|+++|++|+|+|||+|+|
T Consensus 161 ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 161 KTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp TTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=8.1e-52 Score=322.63 Aligned_cols=184 Identities=23% Similarity=0.454 Sum_probs=115.9
Q ss_pred eEEEEEEeC--CeEEEeecCCC---CC----HHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCc
Q 028882 3 ILFSLVARG--SVVLAECSATA---TN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR 73 (202)
Q Consensus 3 I~Ya~Iar~--~~iLae~~~~~---~~----~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~ 73 (202)
|+|+||||+ ++|||++++.+ |+ |.++++.++++++++.++|.+++.|+|.|||+.++|++|+|+||.+||+
T Consensus 3 i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~ 82 (196)
T 2nut_C 3 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPK 82 (196)
T ss_dssp CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcch
Confidence 899999999 89999999843 33 8899999999999657899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhhchhhhc-ccccCCCchhhhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 028882 74 RIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERG 152 (202)
Q Consensus 74 ~~a~~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rg 152 (202)
++||.||++|.++|...|+..+.+ ..++++. +|++.|+++|++|++.+..|+|.+++.+|+||++||.+||+++|+||
T Consensus 83 r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rg 161 (196)
T 2nut_C 83 KLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRG 161 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999865543 3678885 99999999999996544669999999999999999999999999999
Q ss_pred cchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 028882 153 DRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRN 187 (202)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~ 187 (202)
|+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 162 e~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 162 EALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp -----------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-39 Score=252.95 Aligned_cols=175 Identities=22% Similarity=0.395 Sum_probs=148.7
Q ss_pred CceEEEEEEeC----CeEEEeecCCC----------CCH-HHHHHHHhccCCCCCCCceEEeeCCEEEE-EEEeCCEEEE
Q 028882 1 MAILFSLVARG----SVVLAECSATA----------TNA-SAIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL 64 (202)
Q Consensus 1 M~I~Ya~Iar~----~~iLae~~~~~----------~~~-~~~a~~vL~ki~~~~~~k~~~~~~~~~fh-~l~~~~~~~~ 64 (202)
|.|++.+|.+. .++|+...+.+ ++| ..+++.+++++++ ++|.++++|+|.|| |+.++|++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 88999999983 26777666532 223 2466899999885 78999999999999 8999999999
Q ss_pred EEEcCCCCcccHHHHHHHHHHHHhhhhchhhh-cccccCCCchhhhHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHH
Q 028882 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRAVL-SAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMI 142 (202)
Q Consensus 65 ~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~ 142 (202)
|+||.+||+++||.||++|.++|...|+...+ ...+ ....| +.++++|.+|+ +|.+ |++.+++.+|+||++||.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~--~~~~f-~~l~~~m~~Y~-dp~~~d~l~~~q~el~evk~iM~ 155 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSP--ATIHY-TALDGHLSRYQ-NPREADPMSKVQAELDETKIILH 155 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCT--TTCCC-CTHHHHHHHTT-SGGGCCCCHHHHHHHHTCCCEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccc--ccccc-HHHHHHHHHhC-CchhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985433 2111 11246 78899999995 5655 999999999999999999
Q ss_pred HhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHH
Q 028882 143 ENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (202)
Q Consensus 143 ~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r 181 (202)
+||+++|+|||+||+|++||++|+.+|..|+++|+++++
T Consensus 156 ~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 156 NTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp SSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999996
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=216.81 Aligned_cols=119 Identities=40% Similarity=0.699 Sum_probs=114.4
Q ss_pred CceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHH
Q 028882 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (202)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL 80 (202)
|+|+|||||||++|||||+..+|||..+++.+|++++ +.++|.+++.|+|.|||+.++|++|+|+||.+||+++||.||
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip-~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSC-SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCC-CCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 9999999999999999999999999999999999999 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcC
Q 028882 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120 (202)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~ 120 (202)
++|+++|...|+..+.++.+|+++.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999998777789999999999999999999974
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=5.7e-30 Score=193.77 Aligned_cols=120 Identities=40% Similarity=0.699 Sum_probs=107.1
Q ss_pred CceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHH
Q 028882 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (202)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL 80 (202)
|+|+|+||+||++|||||++..++|..+++.++++++ +.++|.+++.|+|.|||+.+||++|+|+||.+||++.||.||
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~-~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSC-SSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCC-CCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 9999999999999999999999999999999999999 477899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchhhhcccccCCCchhhhHHHHHhhhhcCC
Q 028882 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDD 121 (202)
Q Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~ 121 (202)
++|+++|...|+..+.++.+++++.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 99999999999876666678888789999999999999654
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.96 E-value=7.4e-30 Score=174.01 Aligned_cols=79 Identities=27% Similarity=0.556 Sum_probs=74.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhheee
Q 028882 123 NADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCLY 201 (202)
Q Consensus 123 ~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~~ 201 (202)
.+|++.+++.+|+||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++|+++++++.
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~i 81 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 81 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999987776643
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.95 E-value=4.5e-29 Score=177.71 Aligned_cols=81 Identities=26% Similarity=0.526 Sum_probs=76.5
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhee
Q 028882 121 DPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLADTCL 200 (202)
Q Consensus 121 ~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~~~~~ 200 (202)
++..|++.+++.+|+||++||.+||+++|+|||+||+|++||++|+.+|..|+++|++++|+|||+|+|+++|+++++++
T Consensus 29 ~~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~i 108 (119)
T 2kog_A 29 LTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAI 108 (119)
T ss_dssp SSSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999998777765
Q ss_pred e
Q 028882 201 Y 201 (202)
Q Consensus 201 ~ 201 (202)
+
T Consensus 109 i 109 (119)
T 2kog_A 109 I 109 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=151.92 Aligned_cols=70 Identities=37% Similarity=0.793 Sum_probs=62.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 028882 122 PNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLT 191 (202)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~ 191 (202)
+..|+|.+++.+|+||++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 5 ~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 5 PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp -CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999974
No 9
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.93 E-value=7.9e-26 Score=155.20 Aligned_cols=72 Identities=28% Similarity=0.600 Sum_probs=66.7
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 028882 120 DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLT 191 (202)
Q Consensus 120 ~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~ 191 (202)
+++..|+|.+++.+|+||++||.+||++||+|||+|+.|++||++|+.+|..|+++|++|+|+|||+|+|++
T Consensus 25 ~~~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 25 NLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346679999999999999999999999999999999999999999999999999999999999999999985
No 10
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.92 E-value=3e-26 Score=152.57 Aligned_cols=71 Identities=27% Similarity=0.595 Sum_probs=62.7
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 028882 120 DDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 190 (202)
Q Consensus 120 ~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~ 190 (202)
+.+..|+|.+++.+|+||++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++|+|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566999999999999999999999999999999999999999999999999999999999999999985
No 11
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=7.6e-24 Score=156.69 Aligned_cols=121 Identities=19% Similarity=0.306 Sum_probs=99.8
Q ss_pred CceEEEEEEeC----CeEEEeecCCC----------CCH-HHHHHHHhccCCCCCCCceEEeeCCEEEEEE-EeCCEEEE
Q 028882 1 MAILFSLVARG----SVVLAECSATA----------TNA-SAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTVL 64 (202)
Q Consensus 1 M~I~Ya~Iar~----~~iLae~~~~~----------~~~-~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l-~~~~~~~~ 64 (202)
|.|+|++|+|+ .++|+++++.+ ++| ..+++.+++|+++ ++|+++++|+|.|||+ .++|++|+
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence 78999999997 68999999865 444 6789999999985 6899999999999999 78999999
Q ss_pred EEEcCCCCcccHHHHHHHHHHHHhhhhchh-hhcc-cccCCCchhhhHHHHHhhhhcCCccc-hh
Q 028882 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSA-QAYGMNDEFSRVLSQQMEYYSDDPNA-DR 126 (202)
Q Consensus 65 ~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~-~~~~-~~~~~~~~f~~~l~~~~~~y~~~~~~-dk 126 (202)
|+||.+||+++||.||++|.++|...|+.. +.+. .+++ ...| +.|.+.|.+| +||.+ |+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 999999999999999999999999999866 5443 3111 3456 8999999999 56644 53
No 12
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.88 E-value=8.6e-23 Score=129.94 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=61.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 028882 122 PNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (202)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~ 184 (202)
|..|++.+++.+|++|++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++++|+||
T Consensus 1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 1 GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 566999999999999999999999999999999999999999999999999999999999998
No 13
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.87 E-value=1.9e-22 Score=127.38 Aligned_cols=60 Identities=33% Similarity=0.627 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVW 184 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~ 184 (202)
|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++|+|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.82 E-value=1.7e-20 Score=119.86 Aligned_cols=60 Identities=25% Similarity=0.610 Sum_probs=52.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHH
Q 028882 122 PNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (202)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r 181 (202)
+..|+|.+++.+|+||++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++|+|
T Consensus 6 ~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 6 AGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.73 E-value=4.9e-18 Score=106.95 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~ 183 (202)
.++..++.++++|+++|.+||+++++|||+|+.|++||++|..+|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999875
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.34 E-value=3.4e-10 Score=63.74 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=29.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 028882 122 PNADRINRIKGEMSQVRNVMIENIDKVLERGD 153 (202)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge 153 (202)
+..|++.+++.+|+||++||.+||+++|+||+
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 45589999999999999999999999999997
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.28 E-value=4.4e-07 Score=74.60 Aligned_cols=51 Identities=25% Similarity=0.592 Sum_probs=33.0
Q ss_pred chhhhHHHHHhhhhcC---------------CccchhHHHHHHHHHHHHHHHHHhHHHHHHhccch
Q 028882 105 DEFSRVLSQQMEYYSD---------------DPNADRINRIKGEMSQVRNVMIENIDKVLERGDRL 155 (202)
Q Consensus 105 ~~f~~~l~~~~~~y~~---------------~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l 155 (202)
.+|.....++.+.|.. .+..|.+.+++++|+||++||.+||+++|+|||+|
T Consensus 245 krf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 245 KKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 4566666666666632 12348999999999999999999999999999986
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.86 E-value=4.4e-05 Score=57.72 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=63.5
Q ss_pred EEEEEEeCCeEEEeecCCCCC----HHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeC--CEEEEEEEcCCCCcccHH
Q 028882 4 LFSLVARGSVVLAECSATATN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIPF 77 (202)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~~----~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~--~~~~~~vt~~~~~~~~a~ 77 (202)
.++.+.+|++||.+++..+.. ...+++.+|-.=. ....++.+|+|...+..+| +++|+++-..-.+-.-+=
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 578899999999998543322 4667777763322 2334688999998887765 799999988877777778
Q ss_pred HHHHHHHHHHhhhhchh
Q 028882 78 AFLEDIHQRFVKTYGRA 94 (202)
Q Consensus 78 ~fL~~i~~~f~~~~~~~ 94 (202)
.||+.|+..|...|+..
T Consensus 90 ~LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYRTE 106 (185)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999654
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.64 E-value=0.024 Score=39.01 Aligned_cols=53 Identities=9% Similarity=0.197 Sum_probs=41.3
Q ss_pred hhHHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhh
Q 028882 108 SRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (202)
Q Consensus 108 ~~~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~ 166 (202)
...+..+-+++ +.+.++++.+.|+.+++.+==..+-+-|+.++.++...++-.
T Consensus 10 ~~~l~~i~eR~------~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 10 KQALSEIETRH------SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp CHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555555 578899999999999998877888899999999887766544
No 20
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.024 Score=40.07 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=46.2
Q ss_pred HHH-HHHHHhccCCCCC---CCceEEe-eCCEEEEEEE---eCCEEEEEEEcCCCCcccHHHHHHHHHH
Q 028882 25 ASA-IARQILDKIPGNN---DSHVSYS-QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (202)
Q Consensus 25 ~~~-~a~~vL~ki~~~~---~~k~~~~-~~~~~fh~l~---~~~~~~~~vt~~~~~~~~a~~fL~~i~~ 85 (202)
|.. +...+++++.+-. -+|+++. .+||-++|.+ +.+.+++|.|..+.|+-++...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 544 3455577776433 3455554 5899999877 3578999999999999999999999975
No 21
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=94.50 E-value=0.73 Score=32.94 Aligned_cols=117 Identities=9% Similarity=0.089 Sum_probs=67.3
Q ss_pred Cc-eEEEEE-EeCCeEEEeecCCCC-------C----HH---HHHHHHhccCCCCCCC---ceEEeeCCEEEE-EEEeCC
Q 028882 1 MA-ILFSLV-ARGSVVLAECSATAT-------N----AS---AIARQILDKIPGNNDS---HVSYSQDRYIFH-VKRTDG 60 (202)
Q Consensus 1 M~-I~Ya~I-ar~~~iLae~~~~~~-------~----~~---~~a~~vL~ki~~~~~~---k~~~~~~~~~fh-~l~~~~ 60 (202)
|+ |.+.+| .|.+.+|-+...... + ++ -.+..+++++.+..+. ..+...++|..| |.+..|
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 77 666554 456788876644221 1 11 1223334433322222 345556787755 666789
Q ss_pred EEEEEEEcCCCCcccHHHHHHHHHHHHhhhhchhhh-cccccCCCchhhhHHHHHhhhhc
Q 028882 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVL-SAQAYGMNDEFSRVLSQQMEYYS 119 (202)
Q Consensus 61 ~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~y~ 119 (202)
+=|+.++|+. ...-.-.|+.+|.+.|.. +....- ....+=....|+..+++++++|-
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~-~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIK-FAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHH-HHHSTTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHH-HhcCCCCCCCCceecHHHHHHHHHHHHHhc
Confidence 9999999973 234567899999977764 322211 01111123579999999998873
No 22
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=94.00 E-value=1.1 Score=32.12 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=69.3
Q ss_pred CceEEEEEEe-CCeEEEeecCCC----C-CHHH----------HHHHHhccCCC--CCCCceEEeeCCEEEE-EEEeCCE
Q 028882 1 MAILFSLVAR-GSVVLAECSATA----T-NASA----------IARQILDKIPG--NNDSHVSYSQDRYIFH-VKRTDGL 61 (202)
Q Consensus 1 M~I~Ya~Iar-~~~iLae~~~~~----~-~~~~----------~a~~vL~ki~~--~~~~k~~~~~~~~~fh-~l~~~~~ 61 (202)
|+|++..|.. .+.+|-+..... + +.++ -...+.+++.| +.....+++.++|..| |.+..|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 7777776665 467777654321 1 1111 22444556553 2245677788898766 5567899
Q ss_pred EEEEEEcCCCCcccHHHHHHHHH-HHHhhhhch-hhh-cccccCCCchhhhHHHHHhhhh
Q 028882 62 TVLCMADDTAGRRIPFAFLEDIH-QRFVKTYGR-AVL-SAQAYGMNDEFSRVLSQQMEYY 118 (202)
Q Consensus 62 ~~~~vt~~~~~~~~a~~fL~~i~-~~f~~~~~~-~~~-~~~~~~~~~~f~~~l~~~~~~y 118 (202)
=|+.+||+..+ -.-.||.+|. +.|. .|.- ..- ....+=....|+..++.+++++
T Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv-~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 81 KVVMNTDLGVG--PIRDVLHHIYSALYV-EFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHHTTHH-HHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred EEEEEecCCcc--hHHHHHHHHHHHHHH-HHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence 99999998754 3668999999 5665 3321 110 0011112357999999988876
No 23
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.06 E-value=3.3 Score=29.96 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=42.0
Q ss_pred ceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhc
Q 028882 43 HVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 43 k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~ 92 (202)
--.++.+++.|.|..-+++.|+|+++.+.+.-..+.||..+.+.+..-++
T Consensus 47 ~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 47 CSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34667899998888889999999999999988899999888877775554
No 24
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=89.74 E-value=2.9 Score=29.60 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=41.6
Q ss_pred ceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhc
Q 028882 43 HVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 43 k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~ 92 (202)
--.++.+++.|.|..-+++.|+|+++.+.+.-..+.||..+.+.+..-++
T Consensus 47 ~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 47 TNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34667899998888889999999999999988889999888877765554
No 25
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=86.97 E-value=6.8 Score=28.18 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=59.5
Q ss_pred eEEEEEEe--CCeEEEeecCCC-CCH---HHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccH
Q 028882 3 ILFSLVAR--GSVVLAECSATA-TNA---SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIP 76 (202)
Q Consensus 3 I~Ya~Iar--~~~iLae~~~~~-~~~---~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a 76 (202)
|.+.+|-. |..+|+-+=... .+. ....+.+..++.+ .+ .-.+.++++.+.|..-+++.|+++++.+.+.-..
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 44555554 457777755432 222 1233345544442 22 3567789999999999999999999999998889
Q ss_pred HHHHHHHHHHHhhhh
Q 028882 77 FAFLEDIHQRFVKTY 91 (202)
Q Consensus 77 ~~fL~~i~~~f~~~~ 91 (202)
+.||..+.+.+..-|
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988888777655
No 26
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=84.68 E-value=11 Score=28.97 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHhccCCCC--CCCceEEeeCCEEEE-EEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhchhhh-cccccCCCch
Q 028882 31 QILDKIPGN--NDSHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVL-SAQAYGMNDE 106 (202)
Q Consensus 31 ~vL~ki~~~--~~~k~~~~~~~~~fh-~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~~~~~-~~~~~~~~~~ 106 (202)
.+-+++.|. ...-..++.+.|..| |.+..|+-|+++||+. ..-.-.||.+|.+.|....-...- ....+=....
T Consensus 120 ~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~ 197 (219)
T 2j3t_D 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCEL 197 (219)
T ss_dssp HHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHH
T ss_pred HHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccchHH
Confidence 334566531 234567788898866 5667899999999986 445678999999766632111110 0111112367
Q ss_pred hhhHHHHHhhhhcC
Q 028882 107 FSRVLSQQMEYYSD 120 (202)
Q Consensus 107 f~~~l~~~~~~y~~ 120 (202)
|+..++++++.+.+
T Consensus 198 Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 198 FDQNLKLALEVAEK 211 (219)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999854
No 27
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.44 E-value=2.9 Score=35.31 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=57.6
Q ss_pred CceEEEEEEe-CCeEEEe--ecC-CCCC-HHHHHHHHhccCCCCCCCceEEeeCCEEEEEEEeCCEEEEEEEcCCCCccc
Q 028882 1 MAILFSLVAR-GSVVLAE--CSA-TATN-ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRI 75 (202)
Q Consensus 1 M~I~Ya~Iar-~~~iLae--~~~-~~~~-~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~ 75 (202)
|-|...+|.. .+.++.+ |.. .+.+ .+..-+.++.+-. ....--.++.+++.|.|...+++.|+|+++.+.+.-.
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~-~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEE-EGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHH-TSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccc-cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5566666665 3555544 222 1222 2333344443311 0122346678999998988899999999999998888
Q ss_pred HHHHHHHHHHHHhhhhc
Q 028882 76 PFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 76 a~~fL~~i~~~f~~~~~ 92 (202)
.+.||..+.+.+..-++
T Consensus 80 ~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999888877765444
No 28
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=82.35 E-value=8.1 Score=25.21 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQA 176 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s 176 (202)
+.+..++.-+.+.-+-+.++=+++=+=.++-++|...|......|...++..
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655555555554444444444555677889999999999886654
No 29
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=82.13 E-value=7.3 Score=24.48 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~ 166 (202)
+.+.++++.+.|+.+++.+==..+.+-|+-|+.++...+.-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 568899999999999998888888899999998877655544
No 30
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=81.84 E-value=9.9 Score=29.15 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=48.2
Q ss_pred CceEEeeCCEEEE-EEEeCCEEEEEEEcCCCCc----------------------ccHHHHHHHHHHHHhhhhchhhh-c
Q 028882 42 SHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGR----------------------RIPFAFLEDIHQRFVKTYGRAVL-S 97 (202)
Q Consensus 42 ~k~~~~~~~~~fh-~l~~~~~~~~~vt~~~~~~----------------------~~a~~fL~~i~~~f~~~~~~~~~-~ 97 (202)
.-..+..+.|..| |.+..|+=|++++|+..+. ..+-.||.+|...|....-...- .
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4567777887755 6667899999999987633 44678899988766642111110 0
Q ss_pred ccccCCCchhhhHHHHHhhhh
Q 028882 98 AQAYGMNDEFSRVLSQQMEYY 118 (202)
Q Consensus 98 ~~~~~~~~~f~~~l~~~~~~y 118 (202)
...+=....|+..++.+++.+
T Consensus 198 ~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHhc
Confidence 001112257888888887765
No 31
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=81.62 E-value=5.1 Score=29.08 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHhccCCCCC--CCceEEeeCCEEEEE-EEeCCEEEEEEEcCCCCcccHHHHHHHHHH-HHhhhhc-hhh--------h
Q 028882 30 RQILDKIPGNN--DSHVSYSQDRYIFHV-KRTDGLTVLCMADDTAGRRIPFAFLEDIHQ-RFVKTYG-RAV--------L 96 (202)
Q Consensus 30 ~~vL~ki~~~~--~~k~~~~~~~~~fh~-l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~-~f~~~~~-~~~--------~ 96 (202)
+.+.+++.+.. +.-..++.+.|..|+ .+..|+=|+++||+..+ -.-.+|.+|.. .|. .|. ... .
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv-~yv~kNPl~~~~Fy~~ 128 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYV-KYVSNNLLSPYDFAEN 128 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHH-HHHHSCTTSCCSCCCS
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHH-HHHHhCCCcccccccc
Confidence 55566776422 455677778888764 45689999999998744 45678999997 665 332 111 0
Q ss_pred c-----c-cccCCCchhhhHHHHHhhhh
Q 028882 97 S-----A-QAYGMNDEFSRVLSQQMEYY 118 (202)
Q Consensus 97 ~-----~-~~~~~~~~f~~~l~~~~~~y 118 (202)
+ . ..+=....|+..++++++.+
T Consensus 129 ~~~~~~~~~~pI~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 129 ENEMRGQGTRKITNRNFISVLESFLAPM 156 (159)
T ss_dssp CTTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred ccccccccCcCcccHHHHHHHHHHHHhc
Confidence 0 0 01112356888888887765
No 32
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=80.25 E-value=25 Score=29.53 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=42.0
Q ss_pred ceEEeeCCEEEEEEEeCCEEEEEEEcCCCCcccHHHHHHHHHHHHhhhhc
Q 028882 43 HVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (202)
Q Consensus 43 k~~~~~~~~~fh~l~~~~~~~~~vt~~~~~~~~a~~fL~~i~~~f~~~~~ 92 (202)
--.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 45 ~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 45 SPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34668899999888889999999999999988899999888877765554
No 33
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=78.65 E-value=7.1 Score=24.12 Aligned_cols=43 Identities=9% Similarity=0.256 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~ 167 (202)
+.+.++++.+.++.+++.+==..|-+-|+-|+.++...+.-..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5688999999999999988888888999999998887665543
No 34
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=77.68 E-value=9.2 Score=22.99 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 028882 132 GEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 190 (202)
Q Consensus 132 ~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~ 190 (202)
..+..+++-+.+..+-+.++-+++-.=.++-+.|.+-|......|...++..---+.++
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777888887777777777777777777788888999999999988888775444444
No 35
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=75.46 E-value=15 Score=24.24 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 028882 131 KGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLT 191 (202)
Q Consensus 131 ~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~ 191 (202)
...+..+++-+.+..+-+.++=+++-.=.++-+.|.+-|......|...++..---+-++|
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmw 89 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777677766666666677777777777777777777766654444433
No 36
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=75.02 E-value=11 Score=22.53 Aligned_cols=58 Identities=3% Similarity=0.090 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 028882 133 EMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 190 (202)
Q Consensus 133 ~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~ 190 (202)
.+..+++-+.+..+-+.++=+++-.=.++-+.|.+.|......|...++..--=+-++
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777777776666677777788888888888888887765444443
No 37
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=73.36 E-value=2.8 Score=20.94 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchh
Q 028882 128 NRIKGEMSQVRNVMIENIDKVLERGDRLE 156 (202)
Q Consensus 128 ~~~~~~v~~v~~im~~Ni~~~l~Rge~l~ 156 (202)
..++.++.++| .+||.+|+|=|+++
T Consensus 2 Q~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 34666676665 47888888766654
No 38
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=70.56 E-value=8.1 Score=23.93 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=32.5
Q ss_pred hHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 109 RVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 109 ~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
+..+..+++|+.+|.. +...++++-++....-=..||.++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566778889766654 777888888888777778888888764
No 39
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=69.00 E-value=22 Score=23.49 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHH
Q 028882 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRF 172 (202)
Q Consensus 126 kl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f 172 (202)
-...+..+|+++++-|.+-|+.+=..=..||.+..++.-|..-|..+
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45679999999999999999988877777776666555554444433
No 40
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=61.65 E-value=9.3 Score=24.15 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=34.4
Q ss_pred hhHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 108 SRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 108 ~~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
.+..+..+++|+.+|.. +...++++-++....-=..||.++|++
T Consensus 20 ~~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 20 ESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35567788889766654 788889999998888888898888864
No 41
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=56.26 E-value=54 Score=23.64 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=50.0
Q ss_pred EEEEE-eCCeEEEe-----ecCCCCCHH----------HHHHHHhccCCCCCCCceEEeeC-CEEEEEEEeCCEEEEEEE
Q 028882 5 FSLVA-RGSVVLAE-----CSATATNAS----------AIARQILDKIPGNNDSHVSYSQD-RYIFHVKRTDGLTVLCMA 67 (202)
Q Consensus 5 Ya~Ia-r~~~iLae-----~~~~~~~~~----------~~a~~vL~ki~~~~~~k~~~~~~-~~~fh~l~~~~~~~~~vt 67 (202)
+++|+ +++.+++. ....+ +-+ ..++.+-+.+....-....++.+ ++.|.....++.+.++++
T Consensus 31 ~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla 109 (163)
T 1j3w_A 31 YALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVF 109 (163)
T ss_dssp EEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEE
T ss_pred EEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEe
Confidence 44444 57899998 44433 432 23344445555323344455544 677766667889999999
Q ss_pred cCCCCcccHHHHHHHHHHHHh
Q 028882 68 DDTAGRRIPFAFLEDIHQRFV 88 (202)
Q Consensus 68 ~~~~~~~~a~~fL~~i~~~f~ 88 (202)
+++.+--.+.-.+....++..
T Consensus 110 ~~~a~lG~v~~~m~~~v~~l~ 130 (163)
T 1j3w_A 110 DETAPLGKVKLHGKRASEALA 130 (163)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH
Confidence 999986665555554444443
No 42
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=55.14 E-value=33 Score=20.85 Aligned_cols=44 Identities=9% Similarity=0.290 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (202)
+.+.++++.+.++.+++.+==..+.+-|+.|+.++...+.-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 57889999999999999988888889999999998866654433
No 43
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=53.35 E-value=9.4 Score=18.41 Aligned_cols=12 Identities=8% Similarity=0.393 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHh
Q 028882 177 RRFRSTVWWRNV 188 (202)
Q Consensus 177 ~~l~r~~~w~~~ 188 (202)
..++|.||.++.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999874
No 44
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=52.17 E-value=36 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=31.0
Q ss_pred hHHHHHhhhhcCCccc-hhHHHHHHHHH-HHHHHHHHhHHHHHHh
Q 028882 109 RVLSQQMEYYSDDPNA-DRINRIKGEMS-QVRNVMIENIDKVLER 151 (202)
Q Consensus 109 ~~l~~~~~~y~~~~~~-dkl~~~~~~v~-~v~~im~~Ni~~~l~R 151 (202)
+..+..+++|+.+|.. +...++++-+| ...+-=..||.++|++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 4566778889776654 77888888888 6666666777777754
No 45
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=49.33 E-value=40 Score=22.44 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=30.2
Q ss_pred eEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCEEEEEEE
Q 028882 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKR 57 (202)
Q Consensus 3 I~Ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~~k~~~~~~~~~fh~l~ 57 (202)
|.|..|+++. +|++++..| ++|. -..+--+++++|..||...
T Consensus 86 iiyltiskdn--icqfsdekg----------eqid-insqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 86 IIYLTISKDN--ICQFSDEKG----------EQID-INSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEECTTC--CEEEECTTS----------CEEC-CCSSSSEEEETTEEEEEEE
T ss_pred EEEEEEecCc--ceecccccC----------cEee-ccccccceeecceEeehhc
Confidence 6777777776 467777665 3444 3456679999999999864
No 46
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=49.32 E-value=56 Score=21.80 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 028882 169 TFRFRKQARR 178 (202)
Q Consensus 169 s~~f~~~s~~ 178 (202)
|..+++++++
T Consensus 75 A~~yqk~~rk 84 (109)
T 3hd7_B 75 AVKYQSKARR 84 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccC
Confidence 4445555544
No 47
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=47.68 E-value=40 Score=21.52 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHhhhhcCCccchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhh
Q 028882 110 VLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (202)
Q Consensus 110 ~l~~~~~~y~~~~~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (202)
.++..+... .+...+.....-.-+.+.+++....+..+..-||+|+..+...+.+...
T Consensus 13 ~l~~~~~~~-~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 13 EIQQQCNQV-TDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 2333466667777788899999999999999999999988877776544
No 48
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=46.37 E-value=27 Score=17.33 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=18.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 028882 123 NADRINRIKGEMSQVRNVMIEN 144 (202)
Q Consensus 123 ~~dkl~~~~~~v~~v~~im~~N 144 (202)
..+|+.-++..++|-++|..++
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3488999999999999998776
No 49
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=45.53 E-value=51 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=8.1
Q ss_pred HHHhhhhhhhhhHHHHH
Q 028882 157 LLVDKTANMQGNTFRFR 173 (202)
Q Consensus 157 ~L~~ks~~L~~~s~~f~ 173 (202)
.|...|......|...+
T Consensus 47 ~L~~~s~~F~~~a~~l~ 63 (74)
T 2nps_A 47 SLSDNATAFSNRSKQLR 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 50
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=45.01 E-value=43 Score=19.30 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhH
Q 028882 129 RIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNT 169 (202)
Q Consensus 129 ~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s 169 (202)
....-+.++.++-.+.+..+-+.||+|+...+.-++....-
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 34566888999999999999999999998887766655443
No 51
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=44.56 E-value=26 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhc
Q 028882 131 KGEMSQVRNVMIENIDKVLERG 152 (202)
Q Consensus 131 ~~~v~~v~~im~~Ni~~~l~Rg 152 (202)
..+++++++|+..|+.++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999998874
No 52
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=44.54 E-value=49 Score=19.78 Aligned_cols=44 Identities=9% Similarity=0.253 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (202)
..+.++++.+.++.+++.+==..+-+-|+.|+.++...+.-...
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999888888889999999998866654433
No 53
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=44.15 E-value=51 Score=19.85 Aligned_cols=43 Identities=7% Similarity=0.231 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQG 167 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~ 167 (202)
+.+.++++.+.++.+++.+==..+.+-|+.|+.++...+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5789999999999999988888888999999999886665443
No 54
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.73 E-value=53 Score=19.70 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHH
Q 028882 128 NRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFR 173 (202)
Q Consensus 128 ~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~ 173 (202)
..+...+-+..+-+.+.-+++=.=.++=+.|.+.+++.+..|..++
T Consensus 14 ~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~ 59 (63)
T 1urq_A 14 SGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMM 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433334444444555555555554443
No 55
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=42.50 E-value=23 Score=27.74 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~ 166 (202)
..+.+++..+.++.+++.+==..|.+-|+-|+.++...+.-.
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 457888888888888888777778899999999988766544
No 56
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.88 E-value=55 Score=19.59 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028882 131 KGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTV 183 (202)
Q Consensus 131 ~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~ 183 (202)
...+..++.-+.+..+-+.++=+++-.=.++-+.|.+.|......|...++..
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A 60 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 60 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777767666666666777777788888888888877664
No 57
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.83 E-value=39 Score=17.61 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=13.3
Q ss_pred chhHHHhhhhhhhhhHHHHHHHHHHHH
Q 028882 154 RLELLVDKTANMQGNTFRFRKQARRFR 180 (202)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~s~~l~ 180 (202)
+++.|++|-+.|-..-......-.+|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444555555555555444444444443
No 58
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=40.65 E-value=14 Score=24.34 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=31.7
Q ss_pred hHHHHHhhhhcCCccc-hhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 028882 109 RVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLER 151 (202)
Q Consensus 109 ~~l~~~~~~y~~~~~~-dkl~~~~~~v~~v~~im~~Ni~~~l~R 151 (202)
+..+..+++|+.+|.. +...++++-+|+....=..||.++|++
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455667789766544 778888888888877778888888753
No 59
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.88 E-value=44 Score=17.37 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=12.1
Q ss_pred chhHHHhhhhhhhhhHHHHHHHHHHH
Q 028882 154 RLELLVDKTANMQGNTFRFRKQARRF 179 (202)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~s~~l 179 (202)
+++.|++|-++|-..-........+|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445555555554444444443333
No 60
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.16 E-value=48 Score=17.52 Aligned_cols=27 Identities=11% Similarity=0.427 Sum_probs=12.5
Q ss_pred chhHHHhhhhhhhhhHHHHHHHHHHHH
Q 028882 154 RLELLVDKTANMQGNTFRFRKQARRFR 180 (202)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~s~~l~ 180 (202)
+++.|++|-++|-..-......-.+|+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555544444444444443
No 61
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=36.13 E-value=1.4e+02 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhh
Q 028882 127 INRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANM 165 (202)
Q Consensus 127 l~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L 165 (202)
+.++...++++++.=.+.++..|+..+.+...++.++.|
T Consensus 86 ~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~L 124 (214)
T 2cly_A 86 NEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYL 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655566666666666666666666666
No 62
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=35.85 E-value=81 Score=19.75 Aligned_cols=47 Identities=11% Similarity=0.246 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhH
Q 028882 123 NADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNT 169 (202)
Q Consensus 123 ~~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s 169 (202)
..+.+.....-+.++.++-...+..+-..||+|+...+..++....-
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l 67 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHH
Confidence 34777888888999999999999999999999998888766655443
No 63
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=34.36 E-value=20 Score=22.61 Aligned_cols=46 Identities=11% Similarity=0.284 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHH---hHHHHHHhccchhHHHhhhhhhhhhHHHHHH
Q 028882 126 RINRIKGEMSQVRNVMIE---NIDKVLERGDRLELLVDKTANMQGNTFRFRK 174 (202)
Q Consensus 126 kl~~~~~~v~~v~~im~~---Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~ 174 (202)
.+..++..+.+.-+-+.+ .|+.+.++- +.|...|......|...++
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt---~~L~~~s~~F~k~A~~l~r 71 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRA---DALQAGASQFEASAGKLKR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTTSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 444444444 4555667777777766644
No 64
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=33.50 E-value=98 Score=20.06 Aligned_cols=40 Identities=5% Similarity=0.107 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTAN 164 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~ 164 (202)
.++..+-.++..++--|..++++-.++.+.|-++.+|-..
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~ 72 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE 72 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988877777776543
No 65
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=33.29 E-value=7 Score=26.96 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQA 176 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s 176 (202)
+.+..++..+.+.-+-+.+.=+++=+=.++=++|.+.|......|...+++.
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776544444445555667788999999998886665
No 66
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=32.63 E-value=93 Score=19.50 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhh
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQ 166 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~ 166 (202)
..+.++++.+.++.+++.+==..|.+-|+-|+.++...+.-.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 62 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578999999999999998888888899999999887665544
No 67
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=32.14 E-value=89 Score=19.14 Aligned_cols=57 Identities=4% Similarity=0.015 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHH
Q 028882 125 DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRS 181 (202)
Q Consensus 125 dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r 181 (202)
+.....-.-.++..++-..++..+-+-||+|+..+..-+......+.=.+..+.|+.
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445556777888888899999999999999999888888887777777766663
No 68
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.52 E-value=60 Score=16.94 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=8.5
Q ss_pred hhHHHhhhhhhhhhHHHHHH
Q 028882 155 LELLVDKTANMQGNTFRFRK 174 (202)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~ 174 (202)
++.|++|-+.|-..-.....
T Consensus 3 MnQLEdKvEeLl~~~~~L~~ 22 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICN 22 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHH
Confidence 34444444444444333333
No 69
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=29.95 E-value=46 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=15.0
Q ss_pred HHHhccchhHHHhhhhhhhhhHHHH
Q 028882 148 VLERGDRLELLVDKTANMQGNTFRF 172 (202)
Q Consensus 148 ~l~Rge~l~~L~~ks~~L~~~s~~f 172 (202)
++++|++|..|...+.........+
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q~~l 31 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQKRL 31 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677766666666655544444
No 70
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=27.68 E-value=27 Score=16.54 Aligned_cols=8 Identities=13% Similarity=0.704 Sum_probs=6.1
Q ss_pred HHHHHHhh
Q 028882 182 TVWWRNVK 189 (202)
Q Consensus 182 ~~~w~~~k 189 (202)
+|||++..
T Consensus 12 hmcwkkcg 19 (26)
T 1ter_A 12 HMCWKKCG 19 (26)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHhC
Confidence 68998863
No 71
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=25.92 E-value=14 Score=23.24 Aligned_cols=43 Identities=7% Similarity=0.055 Sum_probs=24.1
Q ss_pred chhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 028882 154 RLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYVLLA 196 (202)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii~~ 196 (202)
+++.+.+...+.-.++..|-+.++|=.|+.+++-.|...+.++
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~ 46 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGIS 46 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3444555566666677777777777777777777766655443
No 72
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=22.81 E-value=1.8e+02 Score=19.62 Aligned_cols=75 Identities=11% Similarity=0.165 Sum_probs=40.6
Q ss_pred eEEEEE-EeCCeEEEeecCCCC-CH---HHHHHHHh-------ccCCCCCCCceEEee-CCEEEEEEEeCCEEEEEEEcC
Q 028882 3 ILFSLV-ARGSVVLAECSATAT-NA---SAIARQIL-------DKIPGNNDSHVSYSQ-DRYIFHVKRTDGLTVLCMADD 69 (202)
Q Consensus 3 I~Ya~I-ar~~~iLae~~~~~~-~~---~~~a~~vL-------~ki~~~~~~k~~~~~-~~~~fh~l~~~~~~~~~vt~~ 69 (202)
+..+++ .+++.+++.....+. +- ..++..++ ..+....-....++. ++|.|.+-..++.+.++++++
T Consensus 19 v~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~ 98 (126)
T 3leq_A 19 VDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQ 98 (126)
T ss_dssp EEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECT
T ss_pred ceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCC
Confidence 344444 457899998654321 22 22223332 222211223344554 478777777788888899999
Q ss_pred CCCcccHH
Q 028882 70 TAGRRIPF 77 (202)
Q Consensus 70 ~~~~~~a~ 77 (202)
+.+.-...
T Consensus 99 ~a~lG~v~ 106 (126)
T 3leq_A 99 GADVGVVA 106 (126)
T ss_dssp TCCHHHHH
T ss_pred CCCHHHHH
Confidence 98865543
No 73
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.44 E-value=2.3e+02 Score=24.83 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.5
Q ss_pred chhhhHHHHHhhhhcCCc
Q 028882 105 DEFSRVLSQQMEYYSDDP 122 (202)
Q Consensus 105 ~~f~~~l~~~~~~y~~~~ 122 (202)
..|...+.++.+.|...|
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356777788999997655
No 74
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=22.11 E-value=9.2 Score=23.63 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=23.5
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028882 155 LELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTYV 193 (202)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~s~~l~r~~~w~~~k~~ii 193 (202)
++.+.+...+.-.++.+|-+.++|=.|+.+++-.|...+
T Consensus 4 ~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~i 42 (68)
T 2wwb_B 4 VMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAI 42 (68)
T ss_dssp SSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344445555555666666666666666777766665443
No 75
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=21.16 E-value=1.5e+02 Score=19.89 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=32.4
Q ss_pred ecCCCCCHHHHHHHH----hccCCCCCCCceEEeeCC-EEEEEEE--eCCEEEEEEEc
Q 028882 18 CSATATNASAIARQI----LDKIPGNNDSHVSYSQDR-YIFHVKR--TDGLTVLCMAD 68 (202)
Q Consensus 18 ~~~~~~~~~~~a~~v----L~ki~~~~~~k~~~~~~~-~~fh~l~--~~~~~~~~vt~ 68 (202)
.+..-.+|+.+...+ -++++.+..-+..++.+| ..++-+. ++|-.|+|...
T Consensus 36 ~~~~~~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YVc~~~ 93 (113)
T 1mg4_A 36 SPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGSI 93 (113)
T ss_dssp CTTTCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEEEESS
T ss_pred CccccCCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEEEeCC
Confidence 333346677666655 334444456888888776 7676544 47889999543
No 76
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=21.01 E-value=22 Score=22.67 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 028882 163 ANMQGNTFRFRKQARRFRSTVWWRNVKLTYVL 194 (202)
Q Consensus 163 ~~L~~~s~~f~~~s~~l~r~~~w~~~k~~iii 194 (202)
.++-.++..|-+.++|=.|+.+++-.|...+.
T Consensus 26 ~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG 57 (80)
T 2ww9_B 26 VEFVREGTQFLAKCKKPDLKEYTKIVKAVGIG 57 (80)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33444455555555555666666666655443
No 77
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=20.98 E-value=2e+02 Score=19.37 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 028882 126 RINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRST 182 (202)
Q Consensus 126 kl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~s~~l~r~ 182 (202)
.=..|=.+-+.|++-+.+=+..-+.+..+ .+.|++|...-....+..+.|+|+
T Consensus 58 ~RerIv~eCnavRqaLQdLlseym~~~g~----ke~se~L~~aI~km~~kt~dLrRq 110 (111)
T 4ehp_B 58 RRERIVAECNAVRQALQDLLSEYMGNAGR----KERSDALNSAIDKMTKKTRDLRRQ 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCC----CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccchhHHHHHHHHHHHHHHHHhc
Confidence 33445555666666666666666665554 566777777777777778888874
No 78
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=20.64 E-value=1.5e+02 Score=17.67 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhccchhHHHhhhhhhhhh
Q 028882 124 ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGN 168 (202)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~Ni~~~l~Rge~l~~L~~ks~~L~~~ 168 (202)
.+.+...+.-+.|+.++=.+-+..+-..+|.|+.-.++..+....
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~ 52 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNEN 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhH
Confidence 377888888899999999999999999999888877766655443
Done!